S2_diploid time series - all positions.zip (8.17 MB)
Supplementary Figure S2 - Diploid
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figure
modified on 2016-03-22, 22:58 Dfr1 minor allele frequencies called in the diploid and haploid dfr1
variomics pools. Variant allele frequency
estimates from the RVD2 model are provided as individual pdf figures for each
locus. The pool and position (sacCer3 reference) make up the pdf file title.
Each figure shows four time points (T0-T4) along the x-axis and error rate along
the y-axis. The filled circles and error bars show that point estimate and
posterior 95% Bayesian credible intervals for μj, the locus-specific error rate or variant
allele frequency (VAF) in the text, from the model where j indexes the
position. The plotted numbers (1, 2, 3) show the locus-specific error rate for
the sequencing replicate, θnj in the RVD2 model where n=1, 2, or 3. These figure illustrate the
uncertainty in the measurements due to both finite sequencing depth and
reproducibility between replicates captured in the model.