Supplemental Material for Fan et al.,2019 (G3/2019/400001)

Figure S1. SNP statistics. (A) The proportion of SNP type. The two colors in the inner circle represents the proportion of transition and transversion. The different colors in the outer circle represent the proportion of each base variation. (B) Venn diagram of SNP in three populations. The sum of the numbers in each circle is the total number of SNPs within a population, and the overlap represents SNPs in common between populations.

Figure S2. The distribution of InDels. The pink column represents deletion and blue column represents insertion.

Table S1. Summary of InDels in the three forest musk deer populations

Table S2. Summary of filtered SNP statistics in the three forest musk deer populations

Table S3. Statistical information in four re-divided groups of forest musk deer