.HDF5
evodevo_model.hdf5 (27.53 MB)
.RDATA
evodevo.RData (27.51 MB)
DATASET
evodevo.csv (235.7 MB)
.HDF5
ST_model.hdf5 (178.08 MB)
DATASET
microbiome_data.csv (89.22 MB)
DATASET
microbiome_features_metadata.csv (399.05 kB)
.HDF5
microbiome_model.hdf5 (10.25 MB)
.RDS
scnmt_mefisto_model.rds (181.32 MB)
.GZ
scnmt_data.txt.gz (11.74 MB)
TEXT
scnmt_sample_metadata.txt (156.98 kB)
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MEFISTO: Data for tutorials
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dataset
modified on 2022-01-14, 16:54 Data and pre-trained MEFISTO model to run the vignettes and tutorials provided at https://biofam.github.io/MOFA2/MEFISTO.html.
* Evodevo application: Input data is provided as evodevo.csv and evodevo.RData, the trained MEFISTO model is provided in evodevo_model.hdf5
* Longitudinal microbiome application: Input data is provided as microbiome_data.csv and microbiome_features_metadata.csv, the trained MEFISTO model is provided in microbiome_model.hdf5
* single cell multi-omics application: Input data is provided as scnmt_data.txt.gz
and scnmt_sample_metadata.txt the trained MEFISTO model is provided in scnmt_mefisto_model.rds
and scnmt_sample_metadata.txt the trained MEFISTO model is provided in scnmt_mefisto_model.rds
* spatial transcriptomics application: Input data is downloaded as described in the tutorial, the trained MEFISTO model is provided in ST_model.hdf5
