figshare
Browse
Annotation_combined.txt (184.87 MB)

Annotation of de novo assembly from Arctic charr in Lake Thingvallavatn, Iceland

Download (184.87 MB) This item is shared privately
dataset
modified on 2018-01-24, 16:34
Tab-delimited text file with detailed annotation of all the filtered transcripts in the Trinity assembly.
gene_id: Trinity gene identification code
transcript_id: Trinity transcript identification code
sprot_Top_BLASTX_hit: Top blastx hit from the SwissProt database
TrEMBL_Top_BLASTX_hit: Top blastx hit from the TrEMBL database
RNAMMER: ribosomal RNA prediction
prot_id: Id for protein prediction
prot_coords: Coordinates for predicted proteins
sprot_Top_BLASTP_hit: Top blastp hit for predicted proteins from the SwissProt database
TrEMBL_Top_BLASTP_hit: Top blastp hit for predicted proteins from the TrEMBL database
Pfam: Protein domain prediction from Pfam
SignalP: Prediction of signal peptides
TmHMM: Prediction for transmembrane domains
eggnog: Annotation to the eggNOG database
gene_ontology_blast: Gene ontology categories based on blast results from SwissProt and TrEMBL
gene_ontology_pfam: Gene ontology based on Pfam protein domains
SSncbi_Top_BLASTN_trans: Id for top blastn transcripts in NCBI Salmo salar Annotation
SSncbi_Top_BLASTX_trans: Id for top blastx transcripts in NCBI Salmo salar Annotation
SSncbi_Top_BLASTN_gene_name: Gene name based on top blastn hit in the NCBI Salmo salar Annotation
SSncbi_Top_BLASTX_gene_name: Gene name based on top blastx hit in the NCBI Salmo salar Annotation
OM_Top_BLASTN_trans: Id for top blastn transcripts in Oncorhynchus mykiss genome annotation
OM_Top_BLASTX_trans: Id for top blastx transcripts in Oncorhynchus mykiss genome annotation
SalmoBase_Top_BLASTN_trans: Id for top blastn transcripts in SalmoBase Salmo salar Annotation
SalmoBase_Top_BLASTX_trans: Id for top blastx transcripts in SalmoBase Salmo salar Annotation
SalmoBase_Top_BLASTN_gene_name: Gene name based on top blastn hit in the SalmoBase Salmo salar Anno
tation
SalmoBase_Top_BLASTX_gene_name: Gene name based on top blastx hit in the SalmoBase Salmo salar Anno
tation