SicknessMiner

Neural network trained models for Named Entity Recognition (NER), based on BioBERT [1]; and Named Entity Normalization (NEN), based on NormCo [2].
 
[1] Lee, J., Yoon, W., Kim, S., Kim, D., Kim, S., So, C., & Kang, J. (2019). BioBERT: a pre-trained biomedical language representation model for biomedical text mining. Bioinformatics.
[2] Wright, D., Katsis, Y., Mehta, R., & Hsu, C.N. (2019). NormCo: Deep Disease Normalization for Biomedical Knowledge Base Construction. In Automated Knowledge Base Construction.
 
The BioBERT model was a courtesy of the U.S. National Library of Medicine and can be found at https://github.com/dmis-lab/biobert.