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Supplementary data for "Genomic evidence for revising the Escherichia genus and description of Escherichia ruysiae sp. nov."
Published on by van der Putten
This repository contains supplementary data for the manuscript "Genomic evidence for revising the Escherichia genus and description of Escherichia ruysiae sp. nov." by B.C.L. van der Putten et al.
Provided are:
- Bioinformatic code used in the paper
- A list of accession numbers for the 10,824 Escherichia genomes downloaded from NCBI
- 79,911 Escherichia assemblies generated with SKESA
- Re-assemblies of the 357 selected cryptic clade strain
Raw Illumina and Nanopore sequencing data, as well as the Unicycler assembly are deposited in the ENA under project PRJEB34275.
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Funding
ZonMw: 50-51700-98-120
EU-H2020: COMPARE, 643476
