Spatio-temporal variation in the root-associated microbiota of orchard-grown apple trees

This respository contains three sequence files containing HiSeq 16S sequences from different root compartments of apple trees and their surrounding bulk soils at different root sizes and sampling timepoints. The corresponding information about the samples are in the metadata files. Reads have been filtered for containing either forward or reverse primer. Furthermore, all reads have been demultiplexed and the barcodes removed. The resulting ASV tables and all statistical analysis R code are available on GitHub: https://github.com/mfbeuq/becker_etal_spatiotemporal