RNAseqDB

Published on (GMT) by Qingguo Wang
RNAseqDB is a unified RNA-seq dataset in human cancers and normal tissues. The mapping of GTEx tissues to TCGA tissues is provided in this table: https://www.nature.com/articles/sdata201861/tables/1. For each tissue type, TCGA tumor and matched normal samples are stored in two separate files: tumor in file xxxx-xxxx-xxxx-tcga-t.txt.gz while normal in xxxx-xxxx-xxxx-tcga.txt.gz. For example, TCGA bladder urothelial carcinoma are in file blca-rsem-fpkm-tcga-t.txt.gz and the corresponding bladder normal tissue in blca-rsem-fpkm-tcga.txt.gz.
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