2013-05-21 12:10:52,208 - [horizontal_transfer_event / Thread-1415] - -------------------------------------------------------------------------------- 2013-05-21 12:10:52,208 - [horizontal_transfer_event / Thread-1415] - Horizontal gene transfert event new study... 2013-05-21 12:10:52,208 - [horizontal_transfer_event / Thread-1415] - phylogeny got from Macsims alignment for gene: OG_104828 2013-05-21 12:10:52,208 - [horizontal_transfer_event / Thread-1415] - {'produced by Figenix, task: '/external/fgx/f_nimras_6fed3324_13ea74118c3__3290} 2013-05-21 12:10:52,209 - [horizontal_transfer_event / Thread-1415] - 2013-05-21 12:10:52,209 - [horizontal_transfer_event / Thread-1415] - 2013-05-21 12:10:52,209 - [horizontal_transfer_event / Thread-1415] - Parameter of the research : 2013-05-21 12:10:52,209 - [horizontal_transfer_event / Thread-1415] - -the number of donnor must be more than or egal to 1 2013-05-21 12:10:52,209 - [horizontal_transfer_event / Thread-1415] - -the proximity thresholds for the external species and the recipient-donnor species is :1 2013-05-21 12:10:52,209 - [horizontal_transfer_event / Thread-1415] - -the level used for the booststraps is the minimum level 2013-05-21 12:10:52,210 - [horizontal_transfer_event / Thread-1415] - -the booststrap parammeter is used for the overall parent or the donnor-recipient parent 2013-05-21 12:10:52,210 - [horizontal_transfer_event / Thread-1415] - number of horizontal gene transfert find: 1 2013-05-21 12:10:52,211 - [horizontal_transfer_event / Thread-1415] - {'-tree corresponding to the gene OG_104828:'/internal/nhx/'(((((((((gi|257074464|ref|YP_003162862.1|_high_affinity_nickel_transporte:0.04687[&&NHX:S=CANDIDATUS~ACCUMULIBACTER~PHOSPHATIS~CLADE~IIA~STR~~UW-1:T=522306:ID=9],gi|257093907|ref|YP_003167548.1|_high_affinity_nickel_transporte:0.09191[&&NHX:S=CANDIDATUS~ACCUMULIBACTER~PHOSPHATIS~CLADE~IIA~STR~~UW-1:T=522306:ID=10])91_66_98:0.02135[&&NHX:D=Y:ID=8:S=unknown:T=-1],gi|384914608|ref|ZP_10015392.1|_High_affinity_nickel_transporter:0.08956[&&NHX:S=METHYLACIDIPHILUM~FUMARIOLICUM~SOLV:T=1156937:ID=11])47_*_8:0.00275[&&NHX:D=N:ID=7:S=unknown:T=-1],gi|114776640|ref|ZP_01451683.1|_hypothetical_protein_SPV1_10511_:0.10455[&&NHX:S=MARIPROFUNDUS~FERROOXYDANS~PV-1:T=314345:ID=12])99_70_99:0.02966[&&NHX:D=Y:ID=6:S=unknown:T=-1],((((((gi|83746335|ref|ZP_00943388.1|_Histidine_rich_glycoprotein_precu:0.0040[&&NHX:S=RALSTONIA~SOLANACEARUM~UW551:T=342110:ID=19],gi|421898291|ref|ZP_16328657.1|_efflux_nickel_cobalt_protein__Ra:0.02544[&&NHX:S=RALSTONIA~SOLANACEARUM~MOLK2:T=564065:ID=20])94_90_91:0.00766[&&NHX:D=N:ID=18:S=unknown:T=-1],gi|386335383|ref|YP_006031553.1|_efflux_nickel_cobalt_protein__R:0.01129[&&NHX:S=RALSTONIA~SOLANACEARUM~PO82:T=1031711:ID=21])76_*_*:0.00473[&&NHX:D=Y:ID=17:S=unknown:T=-1],gi|300697099|ref|YP_003747760.1|_conserved_membrane_protein_of_u:0.02574[&&NHX:S=RALSTONIA~SOLANACEARUM~CFBP2957:T=859656:ID=22])98_88_93:0.01785[&&NHX:D=Y:ID=16:S=unknown:T=-1],(gi|17548773|ref|NP_522113.1|_RSp0552_gene_product__Ralstonia_sol:0.0165[&&NHX:S=RALSTONIA~SOLANACEARUM~GMI1000:T=267608:ID=24],gi|410684445|ref|YP_006060452.1|_conserved_membrane_protein_of_u:0.03066[&&NHX:S=RALSTONIA~SOLANACEARUM~CMR15:T=859655:ID=25])94_97_87:0.01936[&&NHX:D=N:ID=23:S=unknown:T=-1])100_98_99:0.04332[&&NHX:D=Y:ID=15:S=unknown:T=-1],gi|347539825|ref|YP_004847250.1|_high_affinity_nickel_transporte:0.06443[&&NHX:S=PSEUDOGULBENKIANIA~SP~~NH8B:T=748280:ID=26])99_82_84:0.02623[&&NHX:D=N:ID=14:S=unknown:T=-1],gi|134288063|ref|YP_001110227.1|_high_affinity_nickel_transporte:0.10765[&&NHX:S=BURKHOLDERIA~VIETNAMIENSIS~G4:T=269482:ID=27])61_*_*:0.00494[&&NHX:D=Y:ID=13:S=unknown:T=-1])83_85_96:0.0158[&&NHX:D=Y:ID=5:S=unknown:T=-1],gi|226941727|ref|YP_002796801.1|_Histidine_rich_glycoprotein__La:0.19917[&&NHX:S=LARIBACTER~HONGKONGENSIS~HLHK9:T=557598:ID=28])83_63_86:0.01734[&&NHX:D=Y:ID=4:S=unknown:T=-1],gi|34498950|ref|NP_903165.1|_hypothetical_protein_CV_3495__Chrom:0.16673[&&NHX:S=CHROMOBACTERIUM~VIOLACEUM~ATCC~12472:T=243365:ID=29])98_83_91:0.03041[&&NHX:D=Y:ID=3:S=unknown:T=-1],gi|91788356|ref|YP_549308.1|_high_affinity_nickel_transporter__P:0.18012[&&NHX:S=POLAROMONAS~SP~~JS666:T=296591:ID=30])95_29_98:0.02191[&&NHX:D=Y:ID=2:S=unknown:T=-1],(((((((gi|299132028|ref|ZP_07025223.1|_high_affinity_nickel_transporter:0.03239[&&NHX:S=AFIPIA~SP~~1NLS2:T=666684:ID=38],gi|414165532|ref|ZP_11421779.1|_hypothetical_protein_HMPREF9697_:0.03594[&&NHX:S=AFIPIA~FELIS~ATCC~53690:T=883080:ID=39])100_100_100:0.10311[&&NHX:D=N:ID=37:S=unknown:T=-1],(((gi|146340751|ref|YP_001205799.1|_high_affinity_nickel_transporte:0.05935[&&NHX:S=BRADYRHIZOBIUM~SP~~ORS~278:T=114615:ID=43],gi|148254836|ref|YP_001239421.1|_hypothetical_protein_BBta_3421_:0.05534[&&NHX:S=BRADYRHIZOBIUM~SP~~BTAI1:T=288000:ID=44])100_98_99:0.04513[&&NHX:D=N:ID=42:S=unknown:T=-1],(((gi|414176524|ref|ZP_11430753.1|_hypothetical_protein_HMPREF9695_:0.12055[&&NHX:S=AFIPIA~BROOMEAE~ATCC~49717:T=883078:ID=48],gi|414176579|ref|ZP_11430808.1|_hypothetical_protein_HMPREF9695_:0.0631[&&NHX:S=AFIPIA~BROOMEAE~ATCC~49717:T=883078:ID=49])60_*_68:0.00709[&&NHX:D=Y:ID=47:S=unknown:T=-1],gi|365886700|ref|ZP_09425607.1|_conserved_membrane_hypothetical_:0.08214[&&NHX:S=BRADYRHIZOBIUM~SP~~STM~3809:T=551936:ID=50])76_*_84:0.01225[&&NHX:D=N:ID=46:S=unknown:T=-1],gi|148255050|ref|YP_001239635.1|_hypothetical_protein_BBta_3645_:0.1046[&&NHX:S=BRADYRHIZOBIUM~SP~~BTAI1:T=288000:ID=51])97_44_95:0.0227[&&NHX:D=Y:ID=45:S=unknown:T=-1])85_56_87:0.01777[&&NHX:D=Y:ID=41:S=unknown:T=-1],gi|92118159|ref|YP_577888.1|_high_affinity_nickel_transporter__N:0.15013[&&NHX:S=NITROBACTER~HAMBURGENSIS~X14:T=323097:ID=52])100_93_99:0.04469[&&NHX:D=Y:ID=40:S=unknown:T=-1])89_68_96:0.03655[&&NHX:D=Y:ID=36:S=unknown:T=-1],((((gi|393768558|ref|ZP_10357095.1|_high_affinity_nickel_transporter:0.0757[&&NHX:S=METHYLOBACTERIUM~SP~~GXF4:T=1096546:ID=57],gi|170748943|ref|YP_001755203.1|_high_affinity_nickel_transporte:0.06987[&&NHX:S=METHYLOBACTERIUM~RADIOTOLERANS~JCM~2831:T=426355:ID=58])47_*_38:0.00401[&&NHX:D=N:ID=56:S=unknown:T=-1],gi|240139191|ref|YP_002963666.1|_hypothetical_protein_MexAM1_MET:0.10886[&&NHX:S=METHYLOBACTERIUM~EXTORQUENS~AM1:T=272630:ID=59])61_36_66:0.00744[&&NHX:D=Y:ID=55:S=unknown:T=-1],(gi|220926272|ref|YP_002501574.1|_high_affinity_nickel_transporte:0.08895[&&NHX:S=METHYLOBACTERIUM~NODULANS~ORS~2060:T=460265:ID=61],gi|170741668|ref|YP_001770323.1|_high_affinity_nickel_transporte:0.09401[&&NHX:S=METHYLOBACTERIUM~SP~~4-46:T=426117:ID=62])77_*_*:0.01337[&&NHX:D=N:ID=60:S=unknown:T=-1])99_86_97:0.04133[&&NHX:D=Y:ID=54:S=unknown:T=-1],gi|154247330|ref|YP_001418288.1|_high_affinity_nickel_transporte:0.18359[&&NHX:S=XANTHOBACTER~AUTOTROPHICUS~PY2:T=78245:ID=63])70_41_90:0.01079[&&NHX:D=N:ID=53:S=unknown:T=-1])89_24_29:0.02515[&&NHX:D=Y:ID=35:S=unknown:T=-1],gi|46203745|ref|ZP_00051039.2|_COG2215__ABC_type_uncharacterized:0.3493[&&NHX:S=MAGNETOSPIRILLUM~MAGNETOTACTICUM~MS-1:T=272627:ID=64])71_*_*:0.018[&&NHX:D=N:ID=34:S=unknown:T=-1],gi|402851337|ref|ZP_10899499.1|_Inner_membrane_protein__Rhodovul:0.2418[&&NHX:S=RHODOVULUM~SP~~PH10:T=1187851:ID=65])100_96_100:0.07666[&&NHX:D=Y:ID=33:S=unknown:T=-1],((gi|395494249|ref|ZP_10425828.1|_hypothetical_protein_SPAM26_2059:0.03724[&&NHX:S=SPHINGOMONAS~SP~~PAMC~26617:T=1112216:ID=68],gi|332188591|ref|ZP_08390309.1|_high_affinity_nickel_transport_f:0.04591[&&NHX:S=SPHINGOMONAS~SP~~S17:T=1007104:ID=69])100_100_100:0.19608[&&NHX:D=N:ID=67:S=unknown:T=-1],(((gi|196234203|ref|ZP_03133035.1|_high_affinity_nickel_transporter:0.22318[&&NHX:S=CHTHONIOBACTER~FLAVUS~ELLIN428:T=497964:ID=73],gi|196234535|ref|ZP_03133358.1|_high_affinity_nickel_transporter:0.19452[&&NHX:S=CHTHONIOBACTER~FLAVUS~ELLIN428:T=497964:ID=74])94_*_95:0.05621[&&NHX:D=Y:ID=72:S=unknown:T=-1],gi|171915238|ref|ZP_02930708.1|_high_affinity_nickel_transporter:0.24322[&&NHX:S=VERRUCOMICROBIUM~SPINOSUM~DSM~4136:T=240016:ID=75])100_100_100:0.09952[&&NHX:D=N:ID=71:XB=event(horizontal_transfer,hgt_from_MICROVIRGA~SP~~WSM3557_to_VERRUCOMICROBIA):S=unknown:T=-1],gi|389695754|ref|ZP_10183396.1|_ABC_type_uncharacterized_transpo:0.33834[&&NHX:S=MICROVIRGA~SP~~WSM3557:T=754501:ID=76])78_47_91:0.02888[&&NHX:D=N:ID=70:S=unknown:T=-1])54_39_91:0.0094[&&NHX:D=Y:ID=66:S=unknown:T=-1])79_22_*:0.01774[&&NHX:D=Y:ID=32:S=unknown:T=-1],gi|167648182|ref|YP_001685845.1|_high_affinity_nickel_transporte:0.21428[&&NHX:S=CAULOBACTER~SP~~K31:T=366602:ID=77])87_*_53:0.01812[&&NHX:D=Y:ID=31:S=unknown:T=-1])90_20_98:0.008735[&&NHX:D=Y:ID=1:S=unknown:T=-1],(((gi|110632918|ref|YP_673126.1|_high_affinity_nickel_transporter__:0.07485[&&NHX:S=CHELATIVORANS~SP~~BNC1:T=266779:ID=81],gi|222083100|ref|YP_002542465.1|_nickel_ABC_transporter__Agrobac:0.06967[&&NHX:S=AGROBACTERIUM~RADIOBACTER~K84:T=311403:ID=82])100_*_100:0.20972[&&NHX:D=N:ID=80:S=unknown:T=-1],((gi|430006372|emb|CCF22175.1|_High_affinity_nickel_transporter__R:0.11432[&&NHX:S=RHIZOBIUM~SP~:T=391:ID=85],gi|404320916|ref|ZP_10968849.1|_high_affinity_nickel_transporter:0.09755[&&NHX:S=OCHROBACTRUM~ANTHROPI~CTS-325:T=1151114:ID=86])100_90_92:0.05159[&&NHX:D=N:ID=84:S=unknown:T=-1],gi|293605464|ref|ZP_06687846.1|_conserved_hypothetical_protein__:0.18786[&&NHX:S=ACHROMOBACTER~PIECHAUDII~ATCC~43553:T=742159:ID=87])93_88_27:0.03665[&&NHX:D=N:ID=83:S=unknown:T=-1])91_*_95:0.02339[&&NHX:D=Y:ID=79:S=unknown:T=-1],((((gi|330809056|ref|YP_004353518.1|_transporter_membrane_protein__P:0.05487[&&NHX:S=PSEUDOMONAS~BRASSICACEARUM~SUBSP~~BRASSICACEARUM~NFM421:T=994484:ID=92],gi|398997249|ref|ZP_10700078.1|_ABC_type_uncharacterized_transpo:0.09419[&&NHX:S=PSEUDOMONAS~SP~~GM21:T=1144325:ID=93])100_100_100:0.04161[&&NHX:D=N:ID=91:S=unknown:T=-1],((((gi|431926115|ref|YP_007239149.1|_ABC_type_uncharacterized_transp:0.01786[&&NHX:S=PSEUDOMONAS~STUTZERI~RCH2:T=644801:ID=98],gi|146307269|ref|YP_001187734.1|_high_affinity_nickel_transporte:0.00563[&&NHX:S=PSEUDOMONAS~MENDOCINA~YMP:T=399739:ID=99])87_*_*:0.00628[&&NHX:D=N:ID=97:S=unknown:T=-1],gi|386019516|ref|YP_005937540.1|_high_affinity_nickel_transporte:0.01611[&&NHX:S=PSEUDOMONAS~STUTZERI~DSM~4166:T=996285:ID=100])100_100_100:0.04035[&&NHX:D=Y:ID=96:S=unknown:T=-1],((gi|18150954|ref|NP_542891.1|_putative_transmembrane_protein__Pse:0.0[&&NHX:S=PSEUDOMONAS~PUTIDA:T=303:ID=103],gi|26989687|ref|NP_745112.1|_hypothetical_protein__Pseudomonas_p:0.0[&&NHX:S=PSEUDOMONAS~PUTIDA~KT2440:T=160488:ID=104])_:0.03176[&&NHX:D=N:ID=102:S=unknown:T=-1],gi|374706013|ref|ZP_09712883.1|_hypothetical_protein_PseS9_22084:0.06749[&&NHX:S=PSEUDOMONAS~SP~~S9:T=686578:ID=105])88_*_87:0.01412[&&NHX:D=N:ID=101:S=unknown:T=-1])98_46_92:0.01959[&&NHX:D=Y:ID=95:S=unknown:T=-1],((gi|416872190|ref|ZP_11916458.1|_putative_transmembrane_protein__:0.07172[&&NHX:S=PSEUDOMONAS~AERUGINOSA~152504:T=983919:ID=108],gi|386021042|ref|YP_005939066.1|_high_affinity_nickel_transporte:0.06444[&&NHX:S=PSEUDOMONAS~STUTZERI~DSM~4166:T=996285:ID=109])99_97_99:0.03992[&&NHX:D=N:ID=107:S=unknown:T=-1],gi|241661370|dbj|BAH79719.1|_putative_transmembrane_protein__Pse:0.05795[&&NHX:S=PSEUDOMONAS~RESINOVORANS:T=53412:ID=110])99_74_93:0.02845[&&NHX:D=Y:ID=106:S=unknown:T=-1])66_42_*:0.00545[&&NHX:D=Y:ID=94:S=unknown:T=-1])99_47_92:0.02483[&&NHX:D=Y:ID=90:S=unknown:T=-1],gi|423197914|ref|ZP_17184497.1|_hypothetical_protein_HMPREF1171_:0.15285[&&NHX:S=AEROMONAS~HYDROPHILA~SSU:T=1073377:ID=111])100_99_100:0.06617[&&NHX:D=N:ID=89:S=unknown:T=-1],(((((((gi|40218083|gb|AAR82965.1|_NirC__Klebsiella_oxytoca_:0.02722[&&NHX:S=KLEBSIELLA~OXYTOCA:T=571:ID=119],gi|295697949|ref|YP_003602606.1|_nickel_resistant_membrane_prote:0.0123[&&NHX:S=ENTEROBACTER~CLOACAE~SUBSP~~CLOACAE~ATCC~13047:T=716541:ID=120])73_*_*:0.0063[&&NHX:D=N:ID=118:S=unknown:T=-1],(gi|402843422|ref|ZP_10891819.1|_putative_nickel_cobalt_efflux_sy:0.02246[&&NHX:S=KLEBSIELLA~SP~~OBRC7:T=936565:ID=122],gi|423116272|ref|ZP_17103963.1|_nickel_cobalt_efflux_system_rcnA:0.08037[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5245:T=883120:ID=123])66_*_17:0.0070[&&NHX:D=N:ID=121:S=unknown:T=-1])99_63_99:0.02739[&&NHX:D=Y:ID=117:S=unknown:T=-1],gi|423123179|ref|ZP_17110862.1|_nickel_cobalt_efflux_system_rcnA:0.02965[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5246:T=883121:ID=124])92_87_95:0.02029[&&NHX:D=Y:ID=116:S=unknown:T=-1],gi|423117785|ref|ZP_17105475.1|_nickel_cobalt_efflux_system_rcnA:0.04667[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5245:T=883120:ID=125])100_99_98:0.06578[&&NHX:D=Y:ID=115:S=unknown:T=-1],gi|333927214|ref|YP_004500793.1|_high_affinity_nickel_transporte:0.1421[&&NHX:S=SERRATIA~SP~~AS12:T=768490:ID=126])57_40_*:0.01129[&&NHX:D=Y:ID=114:S=unknown:T=-1],gi|317049945|ref|YP_004117593.1|_high_affinity_nickel_transporte:0.20502[&&NHX:S=PANTOEA~SP~~AT-9B:T=592316:ID=127])68_*_*:0.01309[&&NHX:D=Y:ID=113:S=unknown:T=-1],((((((gi|153819475|ref|ZP_01972142.1|_nickel_cobalt_efflux_system_RcnA:0.00179[&&NHX:S=VIBRIO~CHOLERAE~NCTC~8457:T=417399:ID=134],gi|262191162|ref|ZP_06049364.1|_hypothetical_protein_VIH_001535_:-0.0[&&NHX:S=VIBRIO~CHOLERAE~CT~5369-93:T=675809:ID=135])63_65_77:0.00252[&&NHX:D=N:ID=133:S=unknown:T=-1],gi|229528217|ref|ZP_04417608.1|_hypothetical_protein_VCG_001297_:0.00364[&&NHX:S=VIBRIO~CHOLERAE~12129~1~:T=592313:ID=136])51_25_*:4.0E-4[&&NHX:D=N:ID=132:S=unknown:T=-1],gi|422908618|ref|ZP_16943298.1|_nickel_cobalt_efflux_system_rcnA:0.00859[&&NHX:S=VIBRIO~CHOLERAE~HE-09:T=991998:ID=137])100_100_100:0.07541[&&NHX:D=Y:ID=131:S=unknown:T=-1],((gi|269966103|ref|ZP_06180193.1|_hypothetical_protein_VMC_16230__:0.00132[&&NHX:S=VIBRIO~ALGINOLYTICUS~40B:T=674977:ID=140],gi|91226363|ref|ZP_01261162.1|_hypothetical_protein_V12G01_06141:0.01175[&&NHX:S=VIBRIO~ALGINOLYTICUS~12G01:T=314288:ID=141])100_100_100:0.05182[&&NHX:D=N:ID=139:S=unknown:T=-1],((gi|254229066|ref|ZP_04922486.1|_nickel_cobalt_efflux_system_RcnA:0.0[&&NHX:S=VIBRIO~SP~~EX25:T=150340:ID=144],gi|262396661|ref|YP_003288514.1|_ABC_transporter_permease__Vibri:0.00636[&&NHX:S=VIBRIO~SP~~EX25:T=150340:ID=145])100_100_100:0.07675[&&NHX:D=Y:ID=143:S=unknown:T=-1],gi|323495603|ref|ZP_08100676.1|_ABC_type_uncharacterized_transpo:0.04922[&&NHX:S=VIBRIO~SINALOENSIS~DSM~21326:T=945550:ID=146])60_47_*:0.00639[&&NHX:D=N:ID=142:S=unknown:T=-1])92_*_*:0.01508[&&NHX:D=Y:ID=138:S=unknown:T=-1])100_100_100:0.1804[&&NHX:D=N:ID=130:S=unknown:T=-1],(((gi|420368998|ref|ZP_14869729.1|_nickel_cobalt_efflux_system_rcnA:0.02197[&&NHX:S=SHIGELLA~FLEXNERI~1235-66:T=766154:ID=150],gi|283835371|ref|ZP_06355112.1|_putative_membrane_protein__Citro:0.02427[&&NHX:S=CITROBACTER~YOUNGAE~ATCC~29220:T=500640:ID=151])99_100_99:0.05311[&&NHX:D=N:ID=149:S=unknown:T=-1],gi|294636595|ref|ZP_06714954.1|_nickel_cobalt_efflux_system_RcnA:0.24843[&&NHX:S=EDWARDSIELLA~TARDA~ATCC~23685:T=500638:ID=152])92_38_92:0.03869[&&NHX:D=Y:ID=148:S=unknown:T=-1],((((((gi|416775238|ref|ZP_11874223.1|_nickel_cobalt_efflux_protein_Rcn:0.00233[&&NHX:S=ESCHERICHIA~COLI~O157~H7~STR~~G5101:T=926026:ID=159],gi|416830213|ref|ZP_11898581.1|_nickel_cobalt_efflux_protein_Rcn:0.0[&&NHX:S=ESCHERICHIA~COLI~O157~H7~STR~~LSU-61:T=926032:ID=160])86_26_0:2.5E-4[&&NHX:D=N:ID=158:S=unknown:T=-1],gi|416786790|ref|ZP_11879127.1|_nickel_cobalt_efflux_protein_Rcn:0.00435[&&NHX:S=ESCHERICHIA~COLI~O157~H-~STR~~493-89:T=926027:ID=161])57_*_79:0.00235[&&NHX:D=N:ID=157:S=unknown:T=-1],gi|416798221|ref|ZP_11884050.1|_nickel_cobalt_efflux_protein_Rcn:0.00287[&&NHX:S=ESCHERICHIA~COLI~O157~H-~STR~~H~2687:T=926028:ID=162])73_40_*:0.00265[&&NHX:D=Y:ID=156:S=unknown:T=-1],gi|420276009|ref|ZP_14778303.1|_nickel_cobalt_efflux_system_rcnA:0.02187[&&NHX:S=ESCHERICHIA~COLI~PA40:T=1005508:ID=163])87_*_*:0.0118[&&NHX:D=Y:ID=155:S=unknown:T=-1],gi|432526886|ref|ZP_19763980.1|_nickel_cobalt_efflux_system_rcnA:0.00521[&&NHX:S=ESCHERICHIA~COLI~KTE233:T=1181777:ID=164])98_100_100:0.0284[&&NHX:D=N:ID=154:S=unknown:T=-1],(((gi|419923304|ref|ZP_14441258.1|_NcrC_nickel_resistant_membrane_p:0.0[&&NHX:S=ESCHERICHIA~COLI~541-15:T=752785:ID=168],gi|190410300|ref|YP_001965803.1|_hypothetical_protein_pK29_p133_:0.0[&&NHX:S=KLEBSIELLA~PNEUMONIAE:T=573:ID=169])_:0.08453[&&NHX:D=N:ID=167:S=unknown:T=-1],gi|423119889|ref|ZP_17107573.1|_nickel_cobalt_efflux_system_rcnA:0.16768[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5246:T=883121:ID=170])98_61_89:0.03379[&&NHX:D=Y:ID=166:S=unknown:T=-1],LCL|336247004_|1028307|ENTEROBACTER~AEROGENES~KCTC~2190|NC_015663:0.11761[&&NHX:S=ENTEROBACTER~AEROGENES~KCTC~2190:T=1028307:ID=171])86_24_*:0.01684[&&NHX:D=Y:ID=165:S=unknown:T=-1])82_*_*:0.01375[&&NHX:D=Y:ID=153:S=unknown:T=-1])64_45_*:0.01357[&&NHX:D=Y:ID=147:S=unknown:T=-1])92_53_98:0.02815[&&NHX:D=N:ID=129:S=unknown:T=-1],gi|242237545|ref|YP_002985726.1|_high_affinity_nickel_transporte:0.22769[&&NHX:S=DICKEYA~DADANTII~ECH703:T=579405:ID=172])97_66_89:0.02741[&&NHX:D=Y:ID=128:S=unknown:T=-1])100_83_100:0.05568[&&NHX:D=Y:ID=112:S=unknown:T=-1])60_41_*:0.0074[&&NHX:D=Y:ID=88:S=unknown:T=-1])_:0.008735[&&NHX:D=N:ID=78:S=unknown:T=-1])npl_A:0.0[&&NHX:D=Y:ID=0:S=unknown:T=-1];'} 2013-05-21 12:10:52,215 - [horizontal_transfer_event / Thread-1415] - Description of the scope used for this research of horizontal gene transfert 2013-05-21 12:10:52,215 - [horizontal_transfer_event / Thread-1415] - the species that can be present in the recipient scope are :[CHLAMYDIAE~VERRUCOMICROBIA~GROUP] 2013-05-21 12:10:52,219 - [horizontal_transfer_event / Thread-1415] - -------------------------------------------------------------------------------- 2013-05-21 12:10:52,220 - [horizontal_transfer_event / Thread-1415] - Horizontal gene transfert found: 2013-05-21 12:10:52,220 - [horizontal_transfer_event / Thread-1415] - {'-subtree corresponding to this event: '/internal/nhx/'((gi|395494249|ref|ZP_10425828.1|_hypothetical_protein_SPAM26_2059:0.03724[&&NHX:S=SPHINGOMONAS~SP~~PAMC~26617:T=1112216:ID=68],gi|332188591|ref|ZP_08390309.1|_high_affinity_nickel_transport_f:0.04591[&&NHX:S=SPHINGOMONAS~SP~~S17:T=1007104:ID=69])100_100_100:0.19608[&&NHX:D=N:ID=67:S=unknown:T=-1],(((gi|196234203|ref|ZP_03133035.1|_high_affinity_nickel_transporter:0.22318[&&NHX:S=CHTHONIOBACTER~FLAVUS~ELLIN428:T=497964:ID=73],gi|196234535|ref|ZP_03133358.1|_high_affinity_nickel_transporter:0.19452[&&NHX:S=CHTHONIOBACTER~FLAVUS~ELLIN428:T=497964:ID=74])94_*_95:0.05621[&&NHX:D=Y:ID=72:S=unknown:T=-1],gi|171915238|ref|ZP_02930708.1|_high_affinity_nickel_transporter:0.24322[&&NHX:S=VERRUCOMICROBIUM~SPINOSUM~DSM~4136:T=240016:ID=75])100_100_100:0.09952[&&NHX:D=N:ID=71:XB=event(horizontal_transfer,hgt_from_MICROVIRGA~SP~~WSM3557_to_VERRUCOMICROBIA):S=unknown:T=-1],gi|389695754|ref|ZP_10183396.1|_ABC_type_uncharacterized_transpo:0.33834[&&NHX:S=MICROVIRGA~SP~~WSM3557:T=754501:ID=76])78_47_91:0.02888[&&NHX:D=N:ID=70:S=unknown:T=-1])54_39_91:0.0094[&&NHX:D=Y:ID=66:S=unknown:T=-1];'} 2013-05-21 12:10:52,220 - [horizontal_transfer_event / Thread-1415] - Description of the scope used for this research of horizontal gene transfert 2013-05-21 12:10:52,220 - [horizontal_transfer_event / Thread-1415] - the species that can be present in the recipient scope are :[CHLAMYDIAE~VERRUCOMICROBIA~GROUP] 2013-05-21 12:10:52,220 - [horizontal_transfer_event / Thread-1415] - The Horizontal gene transfert is find at the following node : 2013-05-21 12:10:52,220 - [horizontal_transfer_event / Thread-1415] - Parent node :70 2013-05-21 12:10:52,221 - [horizontal_transfer_event / Thread-1415] - Recipient node :71 2013-05-21 12:10:52,221 - [horizontal_transfer_event / Thread-1415] - Donnor node :76 2013-05-21 12:10:52,221 - [horizontal_transfer_event / Thread-1415] - 2013-05-21 12:10:52,221 - [horizontal_transfer_event / Thread-1415] - The recipient species of this horizontal gene transfert are : [VERRUCOMICROBIUM~SPINOSUM~DSM~4136,CHTHONIOBACTER~FLAVUS~ELLIN428] 2013-05-21 12:10:52,221 - [horizontal_transfer_event / Thread-1415] - The donnor species of this horizontal gene transfert are : [MICROVIRGA~SP~~WSM3557] 2013-05-21 12:10:52,222 - [horizontal_transfer_event / Thread-1415] - The number of donnor is : 1 2013-05-21 12:10:52,222 - [horizontal_transfer_event / Thread-1415] - The proximity score corresponding to this horizontal gene transfert is egal to : 1.0