2013-06-28 16:06:42,812 - [horizontal_transfer_event / Thread-1103] - -------------------------------------------------------------------------------- 2013-06-28 16:06:42,812 - [horizontal_transfer_event / Thread-1103] - Horizontal gene transfert event new study... 2013-06-28 16:06:42,812 - [horizontal_transfer_event / Thread-1103] - phylogeny got from Macsims alignment for gene: OG_101975 2013-06-28 16:06:42,813 - [horizontal_transfer_event / Thread-1103] - {'produced by Figenix, task: '/external/fgx/f_nimras__5b548a58_13f3d8489b0__5739} 2013-06-28 16:06:42,813 - [horizontal_transfer_event / Thread-1103] - 2013-06-28 16:06:42,813 - [horizontal_transfer_event / Thread-1103] - 2013-06-28 16:06:42,813 - [horizontal_transfer_event / Thread-1103] - Parameter of the research : 2013-06-28 16:06:42,813 - [horizontal_transfer_event / Thread-1103] - -the number of donnor must be more than or egal to 1 2013-06-28 16:06:42,813 - [horizontal_transfer_event / Thread-1103] - -the proximity thresholds for the external species and the recipient-donnor species is :1 2013-06-28 16:06:42,814 - [horizontal_transfer_event / Thread-1103] - -the level used for the booststraps is the minimum level 2013-06-28 16:06:42,814 - [horizontal_transfer_event / Thread-1103] - -the booststrap parammeter is used for the overall parent or the donnor-recipient parent 2013-06-28 16:06:42,814 - [horizontal_transfer_event / Thread-1103] - number of horizontal gene transfert find: 1 2013-06-28 16:06:42,815 - [horizontal_transfer_event / Thread-1103] - {'-tree corresponding to the gene OG_101975:'/internal/nhx/'((((((((((((((((((((((((gi|215489233|ref|YP_002331664.1|_L_rhamnose_mutarotase__Escheric:0.0123[&&NHX:S=ESCHERICHIA~COLI~O127~H6~STR~~E2348~69:T=574521:ID=24],gi|306813836|ref|ZP_07448012.1|_L_rhamnose_mutarotase__Escherich:0.0[&&NHX:S=ESCHERICHIA~COLI~NC101:T=753642:ID=25])88_31_0:0.00117[&&NHX:D=N:ID=23:S=unknown:T=-1],(gi|26250664|ref|NP_756704.1|_hypothetical_protein_c4850__Escheri:0.00963[&&NHX:S=ESCHERICHIA~COLI~CFT073:T=199310:ID=27],gi|222158609|ref|YP_002558748.1|_hypothetical_protein_LF82_1867_:0.02033[&&NHX:S=ESCHERICHIA~COLI~LF82:T=591946:ID=28])65_*_76:0.00323[&&NHX:D=N:ID=26:S=unknown:T=-1])64_*_17:0.00981[&&NHX:D=Y:ID=22:S=unknown:T=-1],gi|415838327|ref|ZP_11520305.1|_L_rhamnose_1_epimerase__Escheric:6.3E-4[&&NHX:S=ESCHERICHIA~COLI~RN587~1:T=670899:ID=29])63_*_83:0.00373[&&NHX:D=Y:ID=21:S=unknown:T=-1],gi|432795164|ref|ZP_20029234.1|_L_rhamnose_mutarotase__Escherich:0.01107[&&NHX:S=ESCHERICHIA~COLI~KTE78:T=1182685:ID=30])39_*_*:1.0E-5[&&NHX:D=Y:ID=20:S=unknown:T=-1],(gi|74314403|ref|YP_312822.1|_hypothetical_protein_SSON_4071__Shi:0.0[&&NHX:S=SHIGELLA~SONNEI~SS046:T=300269:ID=32],gi|218556464|ref|YP_002389378.1|_L_rhamnose_mutarotase__Escheric:0.01326[&&NHX:S=ESCHERICHIA~COLI~IAI1:T=585034:ID=33])58_*_*:2.0E-5[&&NHX:D=N:ID=31:S=unknown:T=-1])_:1.0E-5[&&NHX:D=Y:ID=19:S=unknown:T=-1],gi|301023918|ref|ZP_07187645.1|_L_rhamnose_1_epimerase__Escheric:0.00605[&&NHX:S=ESCHERICHIA~COLI~MS~69-1:T=749531:ID=34])55_*_*:3.0E-5[&&NHX:D=Y:ID=18:S=unknown:T=-1],gi|422830677|ref|ZP_16878832.1|_L_rhamnose_mutarotase__Escherich:0.0077[&&NHX:S=ESCHERICHIA~COLI~B093:T=550674:ID=35])60_*_*:8.0E-5[&&NHX:D=Y:ID=17:S=unknown:T=-1],gi|331685637|ref|ZP_08386220.1|_L_rhamnose_1_epimerase__Escheric:0.011[&&NHX:S=ESCHERICHIA~COLI~H299:T=656393:ID=36])51_0_*:9.9E-4[&&NHX:D=Y:ID=16:S=unknown:T=-1],((((gi|386616727|ref|YP_006136393.1|_L_rhamnose_1_epimerase_RhaU__Es:0.00442[&&NHX:S=ESCHERICHIA~COLI~UMNK88:T=696406:ID=41],gi|82778930|ref|YP_405279.1|_yiiL_gene_product__Shigella_dysente:0.0[&&NHX:S=SHIGELLA~DYSENTERIAE~SD197:T=300267:ID=42])96_20_0:0.00172[&&NHX:D=N:ID=40:S=unknown:T=-1],(gi|194438267|ref|ZP_03070358.1|_L_rhamnose_1_epimerase__Escheric:0.00379[&&NHX:S=ESCHERICHIA~COLI~101-1:T=358709:ID=44],gi|194433233|ref|ZP_03065514.1|_L_rhamnose_1_epimerase__Shigella:0.02001[&&NHX:S=SHIGELLA~DYSENTERIAE~1012:T=358708:ID=45])55_*_*:0.00769[&&NHX:D=N:ID=43:S=unknown:T=-1])90_*_*:0.00243[&&NHX:D=Y:ID=39:S=unknown:T=-1],gi|16131741|ref|NP_418337.1|_L_rhamnose_mutarotase__Escherichia_:0.00646[&&NHX:S=ESCHERICHIA~COLI~STR~~K-12~SUBSTR~~MG1655:T=511145:ID=46])53_*_*:0.00857[&&NHX:D=Y:ID=38:S=unknown:T=-1],((gi|422976143|ref|ZP_16976979.1|_L_rhamnose_mutarotase__Escherich:0.00805[&&NHX:S=ESCHERICHIA~COLI~TA124:T=656435:ID=49],gi|15804491|ref|NP_290531.1|_yiiL_gene_product__Escherichia_coli:0.0[&&NHX:S=ESCHERICHIA~COLI~O157~H7~STR~~EDL933:T=155864:ID=50])46_*_*:3.0E-5[&&NHX:D=N:ID=48:S=unknown:T=-1],gi|291285315|ref|YP_003502133.1|_L_rhamnose_1_epimerase__Escheri:0.01654[&&NHX:S=ESCHERICHIA~COLI~O55~H7~STR~~CB9615:T=701177:ID=51])89_30_82:0.0068[&&NHX:D=Y:ID=47:S=unknown:T=-1])72_*_82:0.00267[&&NHX:D=Y:ID=37:S=unknown:T=-1])52_57_0:0.01291[&&NHX:D=Y:ID=15:S=unknown:T=-1],gi|311281643|ref|YP_003943874.1|_L_rhamnose_1_epimerase__Enterob:0.10839[&&NHX:S=ENTEROBACTER~CLOACAE~SCF1:T=701347:ID=52])81_49_73:0.02851[&&NHX:D=Y:ID=14:S=unknown:T=-1],(gi|334121854|ref|ZP_08495898.1|_L_rhamnose_mutarotase__Enterobac:0.01544[&&NHX:S=ENTEROBACTER~HORMAECHEI~ATCC~49162:T=888063:ID=54],gi|295095056|emb|CBK84146.1|_L_rhamnose_1_epimerase__Enterobacte:0.02713[&&NHX:S=ENTEROBACTER~CLOACAE~SUBSP~~CLOACAE~NCTC~9394:T=718254:ID=55])93_68_92:0.03461[&&NHX:D=N:ID=53:S=unknown:T=-1])96_*_*:0.00724[&&NHX:D=Y:ID=13:S=unknown:T=-1],(gi|283787424|ref|YP_003367289.1|_hypothetical_protein_ROD_38511_:0.03943[&&NHX:S=CITROBACTER~RODENTIUM~ICC168:T=637910:ID=57],gi|340001471|ref|YP_004732355.1|_hypothetical_protein_SBG_3556__:0.04618[&&NHX:S=SALMONELLA~BONGORI~NCTC~12419:T=218493:ID=58])72_29_*:0.01727[&&NHX:D=N:ID=56:S=unknown:T=-1])61_*_76:0.00625[&&NHX:D=Y:ID=12:S=unknown:T=-1],gi|423122921|ref|ZP_17110605.1|_L_rhamnose_mutarotase__Klebsiell:0.04596[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5246:T=883121:ID=59])59_*_75:0.01124[&&NHX:D=Y:ID=11:S=unknown:T=-1],(((((gi|423105720|ref|ZP_17093422.1|_L_rhamnose_mutarotase__Klebsiell:0.01341[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5242:T=883117:ID=65],gi|402843320|ref|ZP_10891720.1|_L_rhamnose_1_epimerase__Klebsiel:0.0[&&NHX:S=KLEBSIELLA~SP~~OBRC7:T=936565:ID=66])61_0_*:8.0E-5[&&NHX:D=N:ID=64:S=unknown:T=-1],gi|375258232|ref|YP_005017402.1|_L_rhamnose_1_epimerase__Klebsie:0.00601[&&NHX:S=KLEBSIELLA~OXYTOCA~KCTC~1686:T=1006551:ID=67])76_13_0:0.00113[&&NHX:D=Y:ID=63:S=unknown:T=-1],(gi|423111171|ref|ZP_17098866.1|_L_rhamnose_mutarotase__Klebsiell:3.0E-5[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5243:T=883118:ID=69],gi|423117183|ref|ZP_17104874.1|_L_rhamnose_mutarotase__Klebsiell:0.00584[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5245:T=883120:ID=70])71_*_*:0.00502[&&NHX:D=N:ID=68:S=unknown:T=-1])78_*_*:0.01237[&&NHX:D=Y:ID=62:S=unknown:T=-1],(gi|421725653|ref|ZP_16164839.1|_L_rhamnose_1_epimerase__Klebsiel:0.02003[&&NHX:S=KLEBSIELLA~OXYTOCA~M5AL:T=290336:ID=72],gi|423126625|ref|ZP_17114304.1|_L_rhamnose_mutarotase__Klebsiell:0.01081[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5250:T=883125:ID=73])77_57_90:0.00823[&&NHX:D=N:ID=71:S=unknown:T=-1])87_32_82:0.01189[&&NHX:D=Y:ID=61:S=unknown:T=-1],gi|440289730|ref|YP_007342495.1|_L_rhamnose_1_epimerase__Enterob:0.10194[&&NHX:S=ENTEROBACTERIACEAE~BACTERIUM~STRAIN~FGI~57:T=693444:ID=74])49_*_29:0.00699[&&NHX:D=N:ID=60:S=unknown:T=-1])73_4_87:0.0080[&&NHX:D=Y:ID=10:S=unknown:T=-1],((((((gi|262041677|ref|ZP_06014869.1|_L_rhamnose_mutarotase__Klebsiell:0.02349[&&NHX:S=KLEBSIELLA~PNEUMONIAE~SUBSP~~RHINOSCLEROMATIS~ATCC~13884:T=667127:ID=81],gi|206579801|ref|YP_002241223.1|_L_rhamnose_1_epimerase__Klebsie:0.0[&&NHX:S=KLEBSIELLA~PNEUMONIAE~342:T=507522:ID=82])43_*_*:5.0E-5[&&NHX:D=N:ID=80:S=unknown:T=-1],gi|238892313|ref|YP_002917047.1|_putative_cytoplasmic_protein__K:0.01237[&&NHX:S=KLEBSIELLA~PNEUMONIAE~SUBSP~~PNEUMONIAE~NTUH-K2044:T=484021:ID=83])81_69_89:0.01615[&&NHX:D=N:ID=79:S=unknown:T=-1],gi|152972705|ref|YP_001337851.1|_hypothetical_protein_KPN_04205_:0.01421[&&NHX:S=KLEBSIELLA~PNEUMONIAE~SUBSP~~PNEUMONIAE~MGH~78578:T=272620:ID=84])57_*_*:3.2E-4[&&NHX:D=Y:ID=78:S=unknown:T=-1],gi|330004499|ref|ZP_08304976.1|_L_rhamnose_1_epimerase__Klebsiel:0.0[&&NHX:S=KLEBSIELLA~SP~~MS~92-3:T=749535:ID=85])100_80_81:0.02573[&&NHX:D=N:ID=77:S=unknown:T=-1],gi|336247987|ref|YP_004591697.1|_L_rhamnose_mutarotase__Enteroba:0.04688[&&NHX:S=ENTEROBACTER~AEROGENES~KCTC~2190:T=1028307:ID=86])66_29_*:0.0102[&&NHX:D=N:ID=76:S=unknown:T=-1],gi|365847492|ref|ZP_09387979.1|_L_rhamnose_1_epimerase__Yokenell:0.08109[&&NHX:S=YOKENELLA~REGENSBURGEI~ATCC~43003:T=1002368:ID=87])45_28_76:0.0030[&&NHX:D=N:ID=75:S=unknown:T=-1])69_20_54:0.01165[&&NHX:D=Y:ID=9:S=unknown:T=-1],(gi|387887426|ref|YP_006317724.1|_L_rhamnose_1_epimerase__Escheri:0.11731[&&NHX:S=ESCHERICHIA~BLATTAE~DSM~4481:T=630626:ID=89],gi|429112438|ref|ZP_19174208.1|_L_rhamnose_mutarotase__Cronobact:0.06615[&&NHX:S=CRONOBACTER~MALONATICUS~507:T=1208662:ID=90])74_*_73:0.01527[&&NHX:D=N:ID=88:S=unknown:T=-1])70_30_81:0.02997[&&NHX:D=Y:ID=8:S=unknown:T=-1],((gi|307129228|ref|YP_003881244.1|_L_rhamnose_mutarotase__Dickeya_:0.04178[&&NHX:S=DICKEYA~DADANTII~3937:T=198628:ID=93],gi|271499037|ref|YP_003332062.1|_L_rhamnose_1_epimerase__Dickeya:0.07071[&&NHX:S=DICKEYA~DADANTII~ECH586:T=590409:ID=94])50_*_78:0.01035[&&NHX:D=N:ID=92:S=unknown:T=-1],gi|251791178|ref|YP_003005899.1|_L_rhamnose_1_epimerase__Dickeya:0.05485[&&NHX:S=DICKEYA~ZEAE~ECH1591:T=561229:ID=95])100_79_99:0.07645[&&NHX:D=N:ID=91:S=unknown:T=-1])83_12_89:0.03115[&&NHX:D=Y:ID=7:S=unknown:T=-1],(gi|365838184|ref|ZP_09379535.1|_L_rhamnose_1_epimerase__Hafnia_a:0.02128[&&NHX:S=HAFNIA~ALVEI~ATCC~51873:T=1002364:ID=97],gi|317491103|ref|ZP_07949539.1|_L_rhamnose_1_epimerase__Enteroba:0.04773[&&NHX:S=ENTEROBACTERIACEAE~BACTERIUM~9_2_54FAA:T=469613:ID=98])100_95_99:0.06498[&&NHX:D=N:ID=96:S=unknown:T=-1])73_*_*:0.00894[&&NHX:D=Y:ID=6:S=unknown:T=-1],(gi|238758575|ref|ZP_04619751.1|_L_rhamnose_mutarotase__Yersinia_:0.0767[&&NHX:S=YERSINIA~ALDOVAE~ATCC~35236:T=527002:ID=100],gi|238786634|ref|ZP_04630435.1|_L_rhamnose_mutarotase__Yersinia_:0.05655[&&NHX:S=YERSINIA~FREDERIKSENII~ATCC~33641:T=349966:ID=101])99_66_84:0.04252[&&NHX:D=N:ID=99:S=unknown:T=-1])56_*_89:0.01607[&&NHX:D=Y:ID=5:S=unknown:T=-1],gi|293396675|ref|ZP_06640951.1|_L_rhamnose_mutarotase__Serratia_:0.15532[&&NHX:S=SERRATIA~ODORIFERA~DSM~4582:T=667129:ID=102])65_*_*:0.00806[&&NHX:D=Y:ID=4:S=unknown:T=-1],(((gi|300716616|ref|YP_003741419.1|_L_rhamnose_mutarotase__Erwinia_:0.1118[&&NHX:S=ERWINIA~BILLINGIAE~EB661:T=634500:ID=106],gi|383813787|ref|ZP_09969211.1|_L_rhamnose_1_epimerase__Serratia:0.11343[&&NHX:S=SERRATIA~SP~~M24T3:T=932213:ID=107])39_*_*:0.00256[&&NHX:D=N:ID=105:S=unknown:T=-1],(((((gi|390434023|ref|ZP_10222561.1|_L_rhamnose_1_epimerase__Pantoea_:0.0[&&NHX:S=PANTOEA~AGGLOMERANS~IG1:T=1110694:ID=113],gi|372273585|ref|ZP_09509621.1|_L_rhamnose_1_epimerase__Pantoea_:0.01343[&&NHX:S=PANTOEA~SP~~SL1_M5:T=697871:ID=114])99_96_94:0.04544[&&NHX:D=N:ID=112:S=unknown:T=-1],gi|304395978|ref|ZP_07377860.1|_L_rhamnose_1_epimerase__Pantoea_:0.01612[&&NHX:S=PANTOEA~SP~~AB:T=517433:ID=115])81_64_94:0.02548[&&NHX:D=Y:ID=111:S=unknown:T=-1],gi|308186901|ref|YP_003931032.1|_L_rhamnose_1_epimerase__Pantoea:0.01527[&&NHX:S=PANTOEA~VAGANS~C9-1:T=712898:ID=116])81_*_92:0.03113[&&NHX:D=Y:ID=110:S=unknown:T=-1],gi|398795411|ref|ZP_10555308.1|_L_rhamnose_1_epimerase__Pantoea_:0.07404[&&NHX:S=PANTOEA~SP~~YR343:T=1144341:ID=117])99_*_99:0.08381[&&NHX:D=Y:ID=109:S=unknown:T=-1],gi|386824902|ref|ZP_10112031.1|_L_rhamnose_mutarotase__Serratia_:0.13967[&&NHX:S=SERRATIA~PLYMUTHICA~PRI-2C:T=1154756:ID=118])78_*_72:0.02656[&&NHX:D=N:ID=108:S=unknown:T=-1])96_*_96:0.03444[&&NHX:D=Y:ID=104:S=unknown:T=-1],(((((((gi|421080880|ref|ZP_15541796.1|_L_rhamnose_mutarotase__Pectobact:0.03784[&&NHX:S=PECTOBACTERIUM~WASABIAE~CFBP~3304:T=1175631:ID=126],gi|261819834|ref|YP_003257940.1|_L_rhamnose_1_epimerase__Pectoba:0.0[&&NHX:S=PECTOBACTERIUM~WASABIAE~WPP163:T=561231:ID=127])99_89_96:0.04396[&&NHX:D=N:ID=125:S=unknown:T=-1],((gi|227326470|ref|ZP_03830494.1|_hypothetical_protein_PcarcW_0378:0.00442[&&NHX:S=PECTOBACTERIUM~CAROTOVORUM~SUBSP~~CAROTOVORUM~WPP14:T=558270:ID=130],gi|227114897|ref|ZP_03828553.1|_hypothetical_protein_PcarbP_1813:0.0088[&&NHX:S=PECTOBACTERIUM~CAROTOVORUM~SUBSP~~BRASILIENSIS~PBR1692:T=558269:ID=131])88_26_76:0.00572[&&NHX:D=N:ID=129:S=unknown:T=-1],gi|50119388|ref|YP_048555.1|_hypothetical_protein__Pectobacteriu:0.01465[&&NHX:S=PECTOBACTERIUM~ATROSEPTICUM~SCRI1043:T=218491:ID=132])60_48_5:0.01032[&&NHX:D=N:ID=128:S=unknown:T=-1])84_41_79:0.00909[&&NHX:D=Y:ID=124:S=unknown:T=-1],gi|253686819|ref|YP_003016009.1|_L_rhamnose_1_epimerase__Pectoba:0.01607[&&NHX:S=PECTOBACTERIUM~CAROTOVORUM~SUBSP~~CAROTOVORUM~PC1:T=561230:ID=133])99_90_93:0.05834[&&NHX:D=Y:ID=123:S=unknown:T=-1],gi|354599344|ref|ZP_09017361.1|_L_rhamnose_mutarotase__Brenneria:0.13785[&&NHX:S=BRENNERIA~SP~~ENID312:T=598467:ID=134])85_16_84:0.03623[&&NHX:D=N:ID=122:S=unknown:T=-1],((gi|205807074|sp|Q65Q29|RHAM_MANSM_RecName__Full_L_rhamnose_mutar:0.0[&&NHX:S=MANNHEIMIA~SUCCINICIPRODUCENS~MBEL55E:T=221988:ID=137],gi|52426379|ref|YP_089516.1|_hypothetical_protein_MS2324__Mannhe:5.0E-5[&&NHX:S=MANNHEIMIA~SUCCINICIPRODUCENS~MBEL55E:T=221988:ID=138])100_100_100:0.17496[&&NHX:D=Y:ID=136:S=unknown:T=-1],gi|242240889|ref|YP_002989070.1|_L_rhamnose_1_epimerase__Dickeya:0.08878[&&NHX:S=DICKEYA~DADANTII~ECH703:T=579405:ID=139])75_25_74:0.031[&&NHX:D=N:ID=135:S=unknown:T=-1])60_*_68:0.01482[&&NHX:D=Y:ID=121:S=unknown:T=-1],(gi|422009683|ref|ZP_16356666.1|_L_rhamnose_1_epimerase__Providen:0.02596[&&NHX:S=PROVIDENCIA~RETTGERI~DMEL1:T=1141663:ID=141],gi|268591109|ref|ZP_06125330.1|_L_rhamnose_1_epimerase__Providen:0.01228[&&NHX:S=PROVIDENCIA~RETTGERI~DSM~1131:T=521000:ID=142])100_100_100:0.13316[&&NHX:D=N:ID=140:S=unknown:T=-1])65_*_*:0.01366[&&NHX:D=Y:ID=120:S=unknown:T=-1],gi|322834536|ref|YP_004214563.1|_L_rhamnose_1_epimerase__Rahnell:0.10797[&&NHX:S=RAHNELLA~SP~~Y9602:T=741091:ID=143])62_*_*:0.01156[&&NHX:D=Y:ID=119:S=unknown:T=-1])61_*_89:0.01147[&&NHX:D=Y:ID=103:S=unknown:T=-1])55_*_66:0.06947[&&NHX:D=Y:ID=3:S=unknown:T=-1],((gi|196231813|ref|ZP_03130669.1|_L_rhamnose_1_epimerase__Chthonio:0.22116[&&NHX:S=CHTHONIOBACTER~FLAVUS~ELLIN428:T=497964:ID=146],gi|182413177|ref|YP_001818243.1|_L_rhamnose_1_epimerase__Opitutu:0.12703[&&NHX:S=OPITUTUS~TERRAE~PB90-1:T=452637:ID=147])77_81_88:0.05367[&&NHX:D=N:ID=145:S=unknown:T=-1],(gi|373850929|ref|ZP_09593730.1|_L_rhamnose_mutarotase__Opitutace:0.12755[&&NHX:S=OPITUTACEAE~BACTERIUM~TAV5:T=794903:ID=149],gi|225164424|ref|ZP_03726684.1|_L_rhamnose_1_epimerase__Diplosph:0.0918[&&NHX:S=DIPLOSPHAERA~COLITERMITUM~TAV2:T=278957:ID=150])97_35_89:0.05849[&&NHX:D=N:ID=148:S=unknown:T=-1])78_34_75:0.02456[&&NHX:D=Y:ID=144:XB=event(horizontal_transfer,hgt_from_GAMMAPROTEOBACTERIA_to_VERRUCOMICROBIA):S=unknown:T=-1])98_*_*:0.04371[&&NHX:D=N:ID=2:S=unknown:T=-1],(LCL|375133331_|903510|VIBRIO~FURNISSII~NCTC~11218|NC_016628|OG_10:0.0[&&NHX:S=VIBRIO~FURNISSII~NCTC~11218:T=903510:ID=152],gi|260769982|ref|ZP_05878915.1|_L_rhamnose_mutarotase__Vibrio_fu:0.0[&&NHX:S=VIBRIO~FURNISSII~CIP~102972:T=675811:ID=153])_:0.30957[&&NHX:D=N:ID=151:S=unknown:T=-1])80_*_91:0.03279499999999999[&&NHX:D=Y:ID=1:S=unknown:T=-1],(((gi|375264614|ref|YP_005022057.1|_hypothetical_protein_VEJY3_0292:0.07602[&&NHX:S=VIBRIO~SP~~EJY3:T=1116375:ID=157],gi|149189318|ref|ZP_01867604.1|_hypothetical_protein_VSAK1_10338:0.07722[&&NHX:S=VIBRIO~SHILONII~AK1:T=391591:ID=158])100_96_100:0.12279[&&NHX:D=N:ID=156:S=unknown:T=-1],((((((((gi|284800267|ref|YP_003412132.1|_hypothetical_protein_LM5578_001:0.0[&&NHX:S=LISTERIA~MONOCYTOGENES~08-5578:T=653938:ID=167],gi|47097231|ref|ZP_00234793.1|_conserved_hypothetical_protein__L:0.01484[&&NHX:S=LISTERIA~MONOCYTOGENES~SEROTYPE~1~2A~STR~~F6854:T=267409:ID=168])26_0_*:2.0E-5[&&NHX:D=N:ID=166:S=unknown:T=-1],gi|441472666|emb|CCQ22421.1|_L_rhamnose_mutarotase__Listeria_mon:0.01325[&&NHX:S=LISTERIA~MONOCYTOGENES:T=1639:ID=169])68_57_86:0.00796[&&NHX:D=N:ID=165:S=unknown:T=-1],(gi|16804883|ref|NP_466368.1|_hypothetical_protein_lmo2846__Liste:0.0[&&NHX:S=LISTERIA~MONOCYTOGENES~EGD-E:T=169963:ID=171],gi|255025595|ref|ZP_05297581.1|_hypothetical_protein_LmonocytFSL:0.00881[&&NHX:S=LISTERIA~MONOCYTOGENES~FSL~J2-003:T=393120:ID=172])69_*_0:6.0E-5[&&NHX:D=N:ID=170:S=unknown:T=-1])54_63_85:0.00464[&&NHX:D=Y:ID=164:S=unknown:T=-1],(((gi|424715677|ref|YP_007016392.1|_L_rhamnose_mutarotase__Listeria:0.0[&&NHX:S=LISTERIA~MONOCYTOGENES~SEROTYPE~4B~STR~~LL195:T=1230340:ID=176],gi|46909034|ref|YP_015423.1|_hypothetical_protein__Listeria_mono:-0.0[&&NHX:S=LISTERIA~MONOCYTOGENES~SEROTYPE~4B~STR~~F2365:T=265669:ID=177])86_89_92:0.02053[&&NHX:D=N:ID=175:S=unknown:T=-1],gi|290892026|ref|ZP_06555023.1|_conserved_hypothetical_protein__:0.00706[&&NHX:S=LISTERIA~MONOCYTOGENES~FSL~J2-071:T=393121:ID=178])22_*_*:1.0E-5[&&NHX:D=N:ID=174:S=unknown:T=-1],gi|16802036|ref|NP_472304.1|_hypothetical_protein_lin2978__Liste:0.00604[&&NHX:S=LISTERIA~INNOCUA~CLIP11262:T=272626:ID=179])95_*_*:0.00333[&&NHX:D=Y:ID=173:S=unknown:T=-1])100_100_91:0.12135[&&NHX:D=Y:ID=163:S=unknown:T=-1],gi|381182188|ref|ZP_09891007.1|_L_rhamnose_mutarotase__Listeriac:0.17435[&&NHX:S=LISTERIACEAE~BACTERIUM~TTU~M1-001:T=1081736:ID=180])98_81_98:0.10282[&&NHX:D=N:ID=162:S=unknown:T=-1],((gi|375307911|ref|ZP_09773198.1|_L_rhamnose_mutarotase__Paenibaci:0.00668[&&NHX:S=PAENIBACILLUS~SP~~ALOE-11:T=1050222:ID=183],gi|374323112|ref|YP_005076241.1|_L_rhamnose_1_epimerase__Paeniba:0.00692[&&NHX:S=PAENIBACILLUS~TERRAE~HPL-003:T=985665:ID=184])100_98_73:0.1398[&&NHX:D=N:ID=182:S=unknown:T=-1],gi|321312658|ref|YP_004204945.1|_L_rhamnose_mutarotase__Bacillus:0.19263[&&NHX:S=BACILLUS~SUBTILIS~BSN5:T=936156:ID=185])58_63_34:0.03446[&&NHX:D=N:ID=181:S=unknown:T=-1])93_52_90:0.06466[&&NHX:D=N:ID=161:S=unknown:T=-1],((gi|223982992|ref|ZP_03633201.1|_hypothetical_protein_HOLDEFILI_0:0.14644[&&NHX:S=HOLDEMANIA~FILIFORMIS~DSM~12042:T=545696:ID=188],gi|302671357|ref|YP_003831317.1|_L_rhamnose_1_epimerase__Butyriv:0.14135[&&NHX:S=BUTYRIVIBRIO~PROTEOCLASTICUS~B316:T=515622:ID=189])97_86_94:0.10701[&&NHX:D=N:ID=187:S=unknown:T=-1],((gi|420263788|ref|ZP_14766424.1|_L_rhamnose_mutarotase__Enterococ:0.01169[&&NHX:S=ENTEROCOCCUS~SP~~C1:T=1182762:ID=192],gi|325568842|ref|ZP_08145135.1|_L_rhamnose_mutarotase__Enterococ:0.00323[&&NHX:S=ENTEROCOCCUS~CASSELIFLAVUS~ATCC~12755:T=888066:ID=193])100_100_99:0.20148[&&NHX:D=N:ID=191:S=unknown:T=-1],gi|257088933|ref|ZP_05583294.1|_conserved_hypothetical_protein__:0.23121[&&NHX:S=ENTEROCOCCUS~FAECALIS~CH188:T=565644:ID=194])74_41_82:0.05186[&&NHX:D=Y:ID=190:S=unknown:T=-1])94_23_71:0.05874[&&NHX:D=Y:ID=186:S=unknown:T=-1])72_49_90:0.02784[&&NHX:D=Y:ID=160:S=unknown:T=-1],gi|269122374|ref|YP_003310551.1|_L_rhamnose_1_epimerase__Sebalde:0.24549[&&NHX:S=SEBALDELLA~TERMITIDIS~ATCC~33386:T=526218:ID=195])82_38_93:0.0422[&&NHX:D=N:ID=159:S=unknown:T=-1])45_*_*:0.00857[&&NHX:D=N:ID=155:S=unknown:T=-1],gi|237807813|ref|YP_002892253.1|_L_rhamnose_1_epimerase__Tolumon:0.15856[&&NHX:S=TOLUMONAS~AUENSIS~DSM~9187:T=595494:ID=196])72_26_*:0.0010050000000000059[&&NHX:D=Y:ID=154:S=unknown:T=-1])npl_A:0.0[&&NHX:D=Y:ID=0:S=unknown:T=-1];'} 2013-06-28 16:06:42,826 - [horizontal_transfer_event / Thread-1103] - Description of the scope used for this research of horizontal gene transfert 2013-06-28 16:06:42,827 - [horizontal_transfer_event / Thread-1103] - the species that can be present in the recipient scope are :[CHLAMYDIAE~VERRUCOMICROBIA~GROUP] 2013-06-28 16:06:42,885 - [horizontal_transfer_event / Thread-1103] - -------------------------------------------------------------------------------- 2013-06-28 16:06:42,888 - [horizontal_transfer_event / Thread-1103] - Horizontal gene transfert found: 2013-06-28 16:06:42,888 - [horizontal_transfer_event / Thread-1103] - {'-subtree corresponding to this event: '/internal/nhx/'(((((((((((((((((((((((gi|215489233|ref|YP_002331664.1|_L_rhamnose_mutarotase__Escheric:0.0123[&&NHX:S=ESCHERICHIA~COLI~O127~H6~STR~~E2348~69:T=574521:ID=24],gi|306813836|ref|ZP_07448012.1|_L_rhamnose_mutarotase__Escherich:0.0[&&NHX:S=ESCHERICHIA~COLI~NC101:T=753642:ID=25])88_31_0:0.00117[&&NHX:D=N:ID=23:S=unknown:T=-1],(gi|26250664|ref|NP_756704.1|_hypothetical_protein_c4850__Escheri:0.00963[&&NHX:S=ESCHERICHIA~COLI~CFT073:T=199310:ID=27],gi|222158609|ref|YP_002558748.1|_hypothetical_protein_LF82_1867_:0.02033[&&NHX:S=ESCHERICHIA~COLI~LF82:T=591946:ID=28])65_*_76:0.00323[&&NHX:D=N:ID=26:S=unknown:T=-1])64_*_17:0.00981[&&NHX:D=Y:ID=22:S=unknown:T=-1],gi|415838327|ref|ZP_11520305.1|_L_rhamnose_1_epimerase__Escheric:6.3E-4[&&NHX:S=ESCHERICHIA~COLI~RN587~1:T=670899:ID=29])63_*_83:0.00373[&&NHX:D=Y:ID=21:S=unknown:T=-1],gi|432795164|ref|ZP_20029234.1|_L_rhamnose_mutarotase__Escherich:0.01107[&&NHX:S=ESCHERICHIA~COLI~KTE78:T=1182685:ID=30])39_*_*:1.0E-5[&&NHX:D=Y:ID=20:S=unknown:T=-1],(gi|74314403|ref|YP_312822.1|_hypothetical_protein_SSON_4071__Shi:0.0[&&NHX:S=SHIGELLA~SONNEI~SS046:T=300269:ID=32],gi|218556464|ref|YP_002389378.1|_L_rhamnose_mutarotase__Escheric:0.01326[&&NHX:S=ESCHERICHIA~COLI~IAI1:T=585034:ID=33])58_*_*:2.0E-5[&&NHX:D=N:ID=31:S=unknown:T=-1])_:1.0E-5[&&NHX:D=Y:ID=19:S=unknown:T=-1],gi|301023918|ref|ZP_07187645.1|_L_rhamnose_1_epimerase__Escheric:0.00605[&&NHX:S=ESCHERICHIA~COLI~MS~69-1:T=749531:ID=34])55_*_*:3.0E-5[&&NHX:D=Y:ID=18:S=unknown:T=-1],gi|422830677|ref|ZP_16878832.1|_L_rhamnose_mutarotase__Escherich:0.0077[&&NHX:S=ESCHERICHIA~COLI~B093:T=550674:ID=35])60_*_*:8.0E-5[&&NHX:D=Y:ID=17:S=unknown:T=-1],gi|331685637|ref|ZP_08386220.1|_L_rhamnose_1_epimerase__Escheric:0.011[&&NHX:S=ESCHERICHIA~COLI~H299:T=656393:ID=36])51_0_*:9.9E-4[&&NHX:D=Y:ID=16:S=unknown:T=-1],((((gi|386616727|ref|YP_006136393.1|_L_rhamnose_1_epimerase_RhaU__Es:0.00442[&&NHX:S=ESCHERICHIA~COLI~UMNK88:T=696406:ID=41],gi|82778930|ref|YP_405279.1|_yiiL_gene_product__Shigella_dysente:0.0[&&NHX:S=SHIGELLA~DYSENTERIAE~SD197:T=300267:ID=42])96_20_0:0.00172[&&NHX:D=N:ID=40:S=unknown:T=-1],(gi|194438267|ref|ZP_03070358.1|_L_rhamnose_1_epimerase__Escheric:0.00379[&&NHX:S=ESCHERICHIA~COLI~101-1:T=358709:ID=44],gi|194433233|ref|ZP_03065514.1|_L_rhamnose_1_epimerase__Shigella:0.02001[&&NHX:S=SHIGELLA~DYSENTERIAE~1012:T=358708:ID=45])55_*_*:0.00769[&&NHX:D=N:ID=43:S=unknown:T=-1])90_*_*:0.00243[&&NHX:D=Y:ID=39:S=unknown:T=-1],gi|16131741|ref|NP_418337.1|_L_rhamnose_mutarotase__Escherichia_:0.00646[&&NHX:S=ESCHERICHIA~COLI~STR~~K-12~SUBSTR~~MG1655:T=511145:ID=46])53_*_*:0.00857[&&NHX:D=Y:ID=38:S=unknown:T=-1],((gi|422976143|ref|ZP_16976979.1|_L_rhamnose_mutarotase__Escherich:0.00805[&&NHX:S=ESCHERICHIA~COLI~TA124:T=656435:ID=49],gi|15804491|ref|NP_290531.1|_yiiL_gene_product__Escherichia_coli:0.0[&&NHX:S=ESCHERICHIA~COLI~O157~H7~STR~~EDL933:T=155864:ID=50])46_*_*:3.0E-5[&&NHX:D=N:ID=48:S=unknown:T=-1],gi|291285315|ref|YP_003502133.1|_L_rhamnose_1_epimerase__Escheri:0.01654[&&NHX:S=ESCHERICHIA~COLI~O55~H7~STR~~CB9615:T=701177:ID=51])89_30_82:0.0068[&&NHX:D=Y:ID=47:S=unknown:T=-1])72_*_82:0.00267[&&NHX:D=Y:ID=37:S=unknown:T=-1])52_57_0:0.01291[&&NHX:D=Y:ID=15:S=unknown:T=-1],gi|311281643|ref|YP_003943874.1|_L_rhamnose_1_epimerase__Enterob:0.10839[&&NHX:S=ENTEROBACTER~CLOACAE~SCF1:T=701347:ID=52])81_49_73:0.02851[&&NHX:D=Y:ID=14:S=unknown:T=-1],(gi|334121854|ref|ZP_08495898.1|_L_rhamnose_mutarotase__Enterobac:0.01544[&&NHX:S=ENTEROBACTER~HORMAECHEI~ATCC~49162:T=888063:ID=54],gi|295095056|emb|CBK84146.1|_L_rhamnose_1_epimerase__Enterobacte:0.02713[&&NHX:S=ENTEROBACTER~CLOACAE~SUBSP~~CLOACAE~NCTC~9394:T=718254:ID=55])93_68_92:0.03461[&&NHX:D=N:ID=53:S=unknown:T=-1])96_*_*:0.00724[&&NHX:D=Y:ID=13:S=unknown:T=-1],(gi|283787424|ref|YP_003367289.1|_hypothetical_protein_ROD_38511_:0.03943[&&NHX:S=CITROBACTER~RODENTIUM~ICC168:T=637910:ID=57],gi|340001471|ref|YP_004732355.1|_hypothetical_protein_SBG_3556__:0.04618[&&NHX:S=SALMONELLA~BONGORI~NCTC~12419:T=218493:ID=58])72_29_*:0.01727[&&NHX:D=N:ID=56:S=unknown:T=-1])61_*_76:0.00625[&&NHX:D=Y:ID=12:S=unknown:T=-1],gi|423122921|ref|ZP_17110605.1|_L_rhamnose_mutarotase__Klebsiell:0.04596[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5246:T=883121:ID=59])59_*_75:0.01124[&&NHX:D=Y:ID=11:S=unknown:T=-1],(((((gi|423105720|ref|ZP_17093422.1|_L_rhamnose_mutarotase__Klebsiell:0.01341[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5242:T=883117:ID=65],gi|402843320|ref|ZP_10891720.1|_L_rhamnose_1_epimerase__Klebsiel:0.0[&&NHX:S=KLEBSIELLA~SP~~OBRC7:T=936565:ID=66])61_0_*:8.0E-5[&&NHX:D=N:ID=64:S=unknown:T=-1],gi|375258232|ref|YP_005017402.1|_L_rhamnose_1_epimerase__Klebsie:0.00601[&&NHX:S=KLEBSIELLA~OXYTOCA~KCTC~1686:T=1006551:ID=67])76_13_0:0.00113[&&NHX:D=Y:ID=63:S=unknown:T=-1],(gi|423111171|ref|ZP_17098866.1|_L_rhamnose_mutarotase__Klebsiell:3.0E-5[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5243:T=883118:ID=69],gi|423117183|ref|ZP_17104874.1|_L_rhamnose_mutarotase__Klebsiell:0.00584[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5245:T=883120:ID=70])71_*_*:0.00502[&&NHX:D=N:ID=68:S=unknown:T=-1])78_*_*:0.01237[&&NHX:D=Y:ID=62:S=unknown:T=-1],(gi|421725653|ref|ZP_16164839.1|_L_rhamnose_1_epimerase__Klebsiel:0.02003[&&NHX:S=KLEBSIELLA~OXYTOCA~M5AL:T=290336:ID=72],gi|423126625|ref|ZP_17114304.1|_L_rhamnose_mutarotase__Klebsiell:0.01081[&&NHX:S=KLEBSIELLA~OXYTOCA~10-5250:T=883125:ID=73])77_57_90:0.00823[&&NHX:D=N:ID=71:S=unknown:T=-1])87_32_82:0.01189[&&NHX:D=Y:ID=61:S=unknown:T=-1],gi|440289730|ref|YP_007342495.1|_L_rhamnose_1_epimerase__Enterob:0.10194[&&NHX:S=ENTEROBACTERIACEAE~BACTERIUM~STRAIN~FGI~57:T=693444:ID=74])49_*_29:0.00699[&&NHX:D=N:ID=60:S=unknown:T=-1])73_4_87:0.0080[&&NHX:D=Y:ID=10:S=unknown:T=-1],((((((gi|262041677|ref|ZP_06014869.1|_L_rhamnose_mutarotase__Klebsiell:0.02349[&&NHX:S=KLEBSIELLA~PNEUMONIAE~SUBSP~~RHINOSCLEROMATIS~ATCC~13884:T=667127:ID=81],gi|206579801|ref|YP_002241223.1|_L_rhamnose_1_epimerase__Klebsie:0.0[&&NHX:S=KLEBSIELLA~PNEUMONIAE~342:T=507522:ID=82])43_*_*:5.0E-5[&&NHX:D=N:ID=80:S=unknown:T=-1],gi|238892313|ref|YP_002917047.1|_putative_cytoplasmic_protein__K:0.01237[&&NHX:S=KLEBSIELLA~PNEUMONIAE~SUBSP~~PNEUMONIAE~NTUH-K2044:T=484021:ID=83])81_69_89:0.01615[&&NHX:D=N:ID=79:S=unknown:T=-1],gi|152972705|ref|YP_001337851.1|_hypothetical_protein_KPN_04205_:0.01421[&&NHX:S=KLEBSIELLA~PNEUMONIAE~SUBSP~~PNEUMONIAE~MGH~78578:T=272620:ID=84])57_*_*:3.2E-4[&&NHX:D=Y:ID=78:S=unknown:T=-1],gi|330004499|ref|ZP_08304976.1|_L_rhamnose_1_epimerase__Klebsiel:0.0[&&NHX:S=KLEBSIELLA~SP~~MS~92-3:T=749535:ID=85])100_80_81:0.02573[&&NHX:D=N:ID=77:S=unknown:T=-1],gi|336247987|ref|YP_004591697.1|_L_rhamnose_mutarotase__Enteroba:0.04688[&&NHX:S=ENTEROBACTER~AEROGENES~KCTC~2190:T=1028307:ID=86])66_29_*:0.0102[&&NHX:D=N:ID=76:S=unknown:T=-1],gi|365847492|ref|ZP_09387979.1|_L_rhamnose_1_epimerase__Yokenell:0.08109[&&NHX:S=YOKENELLA~REGENSBURGEI~ATCC~43003:T=1002368:ID=87])45_28_76:0.0030[&&NHX:D=N:ID=75:S=unknown:T=-1])69_20_54:0.01165[&&NHX:D=Y:ID=9:S=unknown:T=-1],(gi|387887426|ref|YP_006317724.1|_L_rhamnose_1_epimerase__Escheri:0.11731[&&NHX:S=ESCHERICHIA~BLATTAE~DSM~4481:T=630626:ID=89],gi|429112438|ref|ZP_19174208.1|_L_rhamnose_mutarotase__Cronobact:0.06615[&&NHX:S=CRONOBACTER~MALONATICUS~507:T=1208662:ID=90])74_*_73:0.01527[&&NHX:D=N:ID=88:S=unknown:T=-1])70_30_81:0.02997[&&NHX:D=Y:ID=8:S=unknown:T=-1],((gi|307129228|ref|YP_003881244.1|_L_rhamnose_mutarotase__Dickeya_:0.04178[&&NHX:S=DICKEYA~DADANTII~3937:T=198628:ID=93],gi|271499037|ref|YP_003332062.1|_L_rhamnose_1_epimerase__Dickeya:0.07071[&&NHX:S=DICKEYA~DADANTII~ECH586:T=590409:ID=94])50_*_78:0.01035[&&NHX:D=N:ID=92:S=unknown:T=-1],gi|251791178|ref|YP_003005899.1|_L_rhamnose_1_epimerase__Dickeya:0.05485[&&NHX:S=DICKEYA~ZEAE~ECH1591:T=561229:ID=95])100_79_99:0.07645[&&NHX:D=N:ID=91:S=unknown:T=-1])83_12_89:0.03115[&&NHX:D=Y:ID=7:S=unknown:T=-1],(gi|365838184|ref|ZP_09379535.1|_L_rhamnose_1_epimerase__Hafnia_a:0.02128[&&NHX:S=HAFNIA~ALVEI~ATCC~51873:T=1002364:ID=97],gi|317491103|ref|ZP_07949539.1|_L_rhamnose_1_epimerase__Enteroba:0.04773[&&NHX:S=ENTEROBACTERIACEAE~BACTERIUM~9_2_54FAA:T=469613:ID=98])100_95_99:0.06498[&&NHX:D=N:ID=96:S=unknown:T=-1])73_*_*:0.00894[&&NHX:D=Y:ID=6:S=unknown:T=-1],(gi|238758575|ref|ZP_04619751.1|_L_rhamnose_mutarotase__Yersinia_:0.0767[&&NHX:S=YERSINIA~ALDOVAE~ATCC~35236:T=527002:ID=100],gi|238786634|ref|ZP_04630435.1|_L_rhamnose_mutarotase__Yersinia_:0.05655[&&NHX:S=YERSINIA~FREDERIKSENII~ATCC~33641:T=349966:ID=101])99_66_84:0.04252[&&NHX:D=N:ID=99:S=unknown:T=-1])56_*_89:0.01607[&&NHX:D=Y:ID=5:S=unknown:T=-1],gi|293396675|ref|ZP_06640951.1|_L_rhamnose_mutarotase__Serratia_:0.15532[&&NHX:S=SERRATIA~ODORIFERA~DSM~4582:T=667129:ID=102])65_*_*:0.00806[&&NHX:D=Y:ID=4:S=unknown:T=-1],(((gi|300716616|ref|YP_003741419.1|_L_rhamnose_mutarotase__Erwinia_:0.1118[&&NHX:S=ERWINIA~BILLINGIAE~EB661:T=634500:ID=106],gi|383813787|ref|ZP_09969211.1|_L_rhamnose_1_epimerase__Serratia:0.11343[&&NHX:S=SERRATIA~SP~~M24T3:T=932213:ID=107])39_*_*:0.00256[&&NHX:D=N:ID=105:S=unknown:T=-1],(((((gi|390434023|ref|ZP_10222561.1|_L_rhamnose_1_epimerase__Pantoea_:0.0[&&NHX:S=PANTOEA~AGGLOMERANS~IG1:T=1110694:ID=113],gi|372273585|ref|ZP_09509621.1|_L_rhamnose_1_epimerase__Pantoea_:0.01343[&&NHX:S=PANTOEA~SP~~SL1_M5:T=697871:ID=114])99_96_94:0.04544[&&NHX:D=N:ID=112:S=unknown:T=-1],gi|304395978|ref|ZP_07377860.1|_L_rhamnose_1_epimerase__Pantoea_:0.01612[&&NHX:S=PANTOEA~SP~~AB:T=517433:ID=115])81_64_94:0.02548[&&NHX:D=Y:ID=111:S=unknown:T=-1],gi|308186901|ref|YP_003931032.1|_L_rhamnose_1_epimerase__Pantoea:0.01527[&&NHX:S=PANTOEA~VAGANS~C9-1:T=712898:ID=116])81_*_92:0.03113[&&NHX:D=Y:ID=110:S=unknown:T=-1],gi|398795411|ref|ZP_10555308.1|_L_rhamnose_1_epimerase__Pantoea_:0.07404[&&NHX:S=PANTOEA~SP~~YR343:T=1144341:ID=117])99_*_99:0.08381[&&NHX:D=Y:ID=109:S=unknown:T=-1],gi|386824902|ref|ZP_10112031.1|_L_rhamnose_mutarotase__Serratia_:0.13967[&&NHX:S=SERRATIA~PLYMUTHICA~PRI-2C:T=1154756:ID=118])78_*_72:0.02656[&&NHX:D=N:ID=108:S=unknown:T=-1])96_*_96:0.03444[&&NHX:D=Y:ID=104:S=unknown:T=-1],(((((((gi|421080880|ref|ZP_15541796.1|_L_rhamnose_mutarotase__Pectobact:0.03784[&&NHX:S=PECTOBACTERIUM~WASABIAE~CFBP~3304:T=1175631:ID=126],gi|261819834|ref|YP_003257940.1|_L_rhamnose_1_epimerase__Pectoba:0.0[&&NHX:S=PECTOBACTERIUM~WASABIAE~WPP163:T=561231:ID=127])99_89_96:0.04396[&&NHX:D=N:ID=125:S=unknown:T=-1],((gi|227326470|ref|ZP_03830494.1|_hypothetical_protein_PcarcW_0378:0.00442[&&NHX:S=PECTOBACTERIUM~CAROTOVORUM~SUBSP~~CAROTOVORUM~WPP14:T=558270:ID=130],gi|227114897|ref|ZP_03828553.1|_hypothetical_protein_PcarbP_1813:0.0088[&&NHX:S=PECTOBACTERIUM~CAROTOVORUM~SUBSP~~BRASILIENSIS~PBR1692:T=558269:ID=131])88_26_76:0.00572[&&NHX:D=N:ID=129:S=unknown:T=-1],gi|50119388|ref|YP_048555.1|_hypothetical_protein__Pectobacteriu:0.01465[&&NHX:S=PECTOBACTERIUM~ATROSEPTICUM~SCRI1043:T=218491:ID=132])60_48_5:0.01032[&&NHX:D=N:ID=128:S=unknown:T=-1])84_41_79:0.00909[&&NHX:D=Y:ID=124:S=unknown:T=-1],gi|253686819|ref|YP_003016009.1|_L_rhamnose_1_epimerase__Pectoba:0.01607[&&NHX:S=PECTOBACTERIUM~CAROTOVORUM~SUBSP~~CAROTOVORUM~PC1:T=561230:ID=133])99_90_93:0.05834[&&NHX:D=Y:ID=123:S=unknown:T=-1],gi|354599344|ref|ZP_09017361.1|_L_rhamnose_mutarotase__Brenneria:0.13785[&&NHX:S=BRENNERIA~SP~~ENID312:T=598467:ID=134])85_16_84:0.03623[&&NHX:D=N:ID=122:S=unknown:T=-1],((gi|205807074|sp|Q65Q29|RHAM_MANSM_RecName__Full_L_rhamnose_mutar:0.0[&&NHX:S=MANNHEIMIA~SUCCINICIPRODUCENS~MBEL55E:T=221988:ID=137],gi|52426379|ref|YP_089516.1|_hypothetical_protein_MS2324__Mannhe:5.0E-5[&&NHX:S=MANNHEIMIA~SUCCINICIPRODUCENS~MBEL55E:T=221988:ID=138])100_100_100:0.17496[&&NHX:D=Y:ID=136:S=unknown:T=-1],gi|242240889|ref|YP_002989070.1|_L_rhamnose_1_epimerase__Dickeya:0.08878[&&NHX:S=DICKEYA~DADANTII~ECH703:T=579405:ID=139])75_25_74:0.031[&&NHX:D=N:ID=135:S=unknown:T=-1])60_*_68:0.01482[&&NHX:D=Y:ID=121:S=unknown:T=-1],(gi|422009683|ref|ZP_16356666.1|_L_rhamnose_1_epimerase__Providen:0.02596[&&NHX:S=PROVIDENCIA~RETTGERI~DMEL1:T=1141663:ID=141],gi|268591109|ref|ZP_06125330.1|_L_rhamnose_1_epimerase__Providen:0.01228[&&NHX:S=PROVIDENCIA~RETTGERI~DSM~1131:T=521000:ID=142])100_100_100:0.13316[&&NHX:D=N:ID=140:S=unknown:T=-1])65_*_*:0.01366[&&NHX:D=Y:ID=120:S=unknown:T=-1],gi|322834536|ref|YP_004214563.1|_L_rhamnose_1_epimerase__Rahnell:0.10797[&&NHX:S=RAHNELLA~SP~~Y9602:T=741091:ID=143])62_*_*:0.01156[&&NHX:D=Y:ID=119:S=unknown:T=-1])61_*_89:0.01147[&&NHX:D=Y:ID=103:S=unknown:T=-1])55_*_66:0.06947[&&NHX:D=Y:ID=3:S=unknown:T=-1],((gi|196231813|ref|ZP_03130669.1|_L_rhamnose_1_epimerase__Chthonio:0.22116[&&NHX:S=CHTHONIOBACTER~FLAVUS~ELLIN428:T=497964:ID=146],gi|182413177|ref|YP_001818243.1|_L_rhamnose_1_epimerase__Opitutu:0.12703[&&NHX:S=OPITUTUS~TERRAE~PB90-1:T=452637:ID=147])77_81_88:0.05367[&&NHX:D=N:ID=145:S=unknown:T=-1],(gi|373850929|ref|ZP_09593730.1|_L_rhamnose_mutarotase__Opitutace:0.12755[&&NHX:S=OPITUTACEAE~BACTERIUM~TAV5:T=794903:ID=149],gi|225164424|ref|ZP_03726684.1|_L_rhamnose_1_epimerase__Diplosph:0.0918[&&NHX:S=DIPLOSPHAERA~COLITERMITUM~TAV2:T=278957:ID=150])97_35_89:0.05849[&&NHX:D=N:ID=148:S=unknown:T=-1])78_34_75:0.02456[&&NHX:D=Y:ID=144:XB=event(horizontal_transfer,hgt_from_GAMMAPROTEOBACTERIA_to_VERRUCOMICROBIA):S=unknown:T=-1])98_*_*:0.04371[&&NHX:D=N:ID=2:S=unknown:T=-1],(LCL|375133331_|903510|VIBRIO~FURNISSII~NCTC~11218|NC_016628|OG_10:0.0[&&NHX:S=VIBRIO~FURNISSII~NCTC~11218:T=903510:ID=152],gi|260769982|ref|ZP_05878915.1|_L_rhamnose_mutarotase__Vibrio_fu:0.0[&&NHX:S=VIBRIO~FURNISSII~CIP~102972:T=675811:ID=153])_:0.30957[&&NHX:D=N:ID=151:S=unknown:T=-1])80_*_91:0.03279499999999999[&&NHX:D=Y:ID=1:S=unknown:T=-1];'} 2013-06-28 16:06:42,898 - [horizontal_transfer_event / Thread-1103] - Description of the scope used for this research of horizontal gene transfert 2013-06-28 16:06:42,898 - [horizontal_transfer_event / Thread-1103] - the species that can be present in the recipient scope are :[CHLAMYDIAE~VERRUCOMICROBIA~GROUP] 2013-06-28 16:06:42,909 - [horizontal_transfer_event / Thread-1103] - The Horizontal gene transfert is find at the following node : 2013-06-28 16:06:42,909 - [horizontal_transfer_event / Thread-1103] - Parent node :2 2013-06-28 16:06:42,909 - [horizontal_transfer_event / Thread-1103] - Recipient node :144 2013-06-28 16:06:42,909 - [horizontal_transfer_event / Thread-1103] - Donnor node :3 2013-06-28 16:06:42,909 - [horizontal_transfer_event / Thread-1103] - 2013-06-28 16:06:42,910 - [horizontal_transfer_event / Thread-1103] - The recipient species of this horizontal gene transfert are : [OPITUTACEAE~BACTERIUM~TAV5,DIPLOSPHAERA~COLITERMITUM~TAV2,CHTHONIOBACTER~FLAVUS~ELLIN428,OPITUTUS~TERRAE~PB90-1] 2013-06-28 16:06:42,913 - [horizontal_transfer_event / Thread-1103] - The donnor species of this horizontal gene transfert are : [PANTOEA~SP~~YR343,PANTOEA~SP~~AB,PANTOEA~AGGLOMERANS~IG1,PANTOEA~SP~~SL1_M5,PANTOEA~VAGANS~C9-1,SERRATIA~PLYMUTHICA~PRI-2C,ERWINIA~BILLINGIAE~EB661,SERRATIA~SP~~M24T3,RAHNELLA~SP~~Y9602,MANNHEIMIA~SUCCINICIPRODUCENS~MBEL55E,DICKEYA~DADANTII~ECH703,PECTOBACTERIUM~CAROTOVORUM~SUBSP~~CAROTOVORUM~PC1,PECTOBACTERIUM~WASABIAE~WPP163,PECTOBACTERIUM~WASABIAE~CFBP~3304,PECTOBACTERIUM~ATROSEPTICUM~SCRI1043,PECTOBACTERIUM~CAROTOVORUM~SUBSP~~CAROTOVORUM~WPP14,PECTOBACTERIUM~CAROTOVORUM~SUBSP~~BRASILIENSIS~PBR1692,BRENNERIA~SP~~ENID312,PROVIDENCIA~RETTGERI~DSM~1131,PROVIDENCIA~RETTGERI~DMEL1,YERSINIA~ALDOVAE~ATCC~35236,YERSINIA~FREDERIKSENII~ATCC~33641,DICKEYA~DADANTII~ECH586,DICKEYA~DADANTII~3937,DICKEYA~ZEAE~ECH1591,ENTEROBACTER~AEROGENES~KCTC~2190,KLEBSIELLA~PNEUMONIAE~SUBSP~~PNEUMONIAE~MGH~78578,KLEBSIELLA~PNEUMONIAE~342,KLEBSIELLA~PNEUMONIAE~SUBSP~~RHINOSCLEROMATIS~ATCC~13884,KLEBSIELLA~PNEUMONIAE~SUBSP~~PNEUMONIAE~NTUH-K2044,KLEBSIELLA~SP~~MS~92-3,YOKENELLA~REGENSBURGEI~ATCC~43003,KLEBSIELLA~OXYTOCA~10-5246,ENTEROBACTER~HORMAECHEI~ATCC~49162,ENTEROBACTER~CLOACAE~SUBSP~~CLOACAE~NCTC~9394,ESCHERICHIA~COLI~STR~~K-12~SUBSTR~~MG1655,SHIGELLA~DYSENTERIAE~SD197,ESCHERICHIA~COLI~UMNK88,SHIGELLA~DYSENTERIAE~1012,ESCHERICHIA~COLI~101-1,ESCHERICHIA~COLI~O55~H7~STR~~CB9615,ESCHERICHIA~COLI~TA124,ESCHERICHIA~COLI~O157~H7~STR~~EDL933,ESCHERICHIA~COLI~B093,SHIGELLA~SONNEI~SS046,ESCHERICHIA~COLI~IAI1,ESCHERICHIA~COLI~RN587~1,ESCHERICHIA~COLI~NC101,ESCHERICHIA~COLI~O127~H6~STR~~E2348~69,ESCHERICHIA~COLI~LF82,ESCHERICHIA~COLI~CFT073,ESCHERICHIA~COLI~KTE78,ESCHERICHIA~COLI~MS~69-1,ESCHERICHIA~COLI~H299,ENTEROBACTER~CLOACAE~SCF1,SALMONELLA~BONGORI~NCTC~12419,CITROBACTER~RODENTIUM~ICC168,ENTEROBACTERIACEAE~BACTERIUM~STRAIN~FGI~57,KLEBSIELLA~OXYTOCA~10-5243,KLEBSIELLA~OXYTOCA~10-5245,KLEBSIELLA~SP~~OBRC7,KLEBSIELLA~OXYTOCA~10-5242,KLEBSIELLA~OXYTOCA~KCTC~1686,KLEBSIELLA~OXYTOCA~10-5250,KLEBSIELLA~OXYTOCA~M5AL,CRONOBACTER~MALONATICUS~507,ESCHERICHIA~BLATTAE~DSM~4481,ENTEROBACTERIACEAE~BACTERIUM~9_2_54FAA,HAFNIA~ALVEI~ATCC~51873,SERRATIA~ODORIFERA~DSM~4582] 2013-06-28 16:06:42,914 - [horizontal_transfer_event / Thread-1103] - The number of donnor is : 70 2013-06-28 16:06:42,914 - [horizontal_transfer_event / Thread-1103] - The proximity score corresponding to this horizontal gene transfert is egal to : 1.0