EukProt_ID Name_to_Use Strain Previous_Names Replaces_EukProt_ID Genus_UniEuk Epithet_UniEuk Supergroup_UniEuk Taxogroup_UniEuk Taxonomy_UniEuk Merged_Strains Data_Source_URL Data_Source_Name Paper_DOI Actions_Prior_to_Use Data_Source_Type Notes EP00001 Collodictyon_triciliatum Arungen Collodictyon triciliatum Collodictyonidae Collodictyonidae Eukaryota;"CRuMs";Collodictyonidae;Collodictyon;"Collo 18S-clade 1";strain Arungen no N/A 454AllContigs_Korea_transeq 10.1093/molbev/mss001 transeq (min length 50) transcriptome EP00002 Diphylleia_rotans NIES-3764 Diphylleia rotans Collodictyonidae Collodictyonidae Eukaryota;"CRuMs";Collodictyonidae;Diphylleia;Diphylleia rotans;strain NIES-3764 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5997434 Diphylleia rotans NIES-3764 transcriptome 10.1093/gbe/evy014 assemble mRNA,translate mRNA transcriptome EP00003 Mantamonas_plastica CCAP 1946/1 Mantamonas plastica Mantamonas Mantamonas Eukaryota;"CRuMs";Mantamonas;Mantamonas plastica;strain CCAP-1946/1 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5997433 Mantamonas plastica CCAP 1946/1 transcriptome 10.1093/gbe/evy014 assemble mRNA,translate mRNA transcriptome EP00004 Rigifila_ramosa CCAP 1967/1 Rigifila ramosa Rigifilida Rigifilida Eukaryota;"CRuMs";Rigifilida;Rigifila;Rigifila ramosa;strain CCAP-1967/1 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5997435 Rigifila ramosa CCAP 1967/1 transcriptome 10.1093/gbe/evy014 assemble mRNA,translate mRNA transcriptome EP00005 Dracoamoeba_jomungandri Chinc5 Stereomyxa_ramosa Dracoamoeba jomungandri Amoebozoa Acanthopodida Eukaryota;Amorphea;Amoebozoa;Discosea;Centramoebia;"core centramoebids";Acanthopodida;"DLPV clade";Dracoamoeba;Dracoamoeba jomungandri;strain Chinc5 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0439 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00006 Acanthamoeba_castellanii Neff Acanthamoeba castellanii Amoebozoa Acanthopodida Eukaryota;Amorphea;Amoebozoa;Discosea;Centramoebia;"core centramoebids";Acanthopodida;Acanthamoeba;"Acastellanii clade";Acanthamoeba castellanii;strain Neff no ftp://ftp.ensemblgenomes.org/pub/protists/release-42/fasta/protists_amoebozoa1_collection/acanthamoeba_castellanii_str_neff/pep/Acanthamoeba_castellanii_str_neff.Acastellanii.strNEFF_v1.pep.all.fa.gz Acastellanii.strNEFF v1 10.1186/gb-2013-14-2-r11 none genome EP00007 Cunea_sp_BSH-02190019 BSH-02190019 Mayorella_sp Cunea N/A Amoebozoa Dactylopodida Eukaryota;Amorphea;Amoebozoa;Discosea;Flabellinia;"core flabellinids";Dactylopodida;Cunea;strain BSH-02190019 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0417 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00008 Paramoeba_atlantica CCAP 1560/9 Paramoeba atlantica Amoebozoa Dactylopodida Eukaryota;Amorphea;Amoebozoa;Discosea;Flabellinia;"core flabellinids";Dactylopodida;Paramoebidae;Paramoeba;"Patlantica clade";Paramoeba atlantica;strain CCAP-1560/9 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0151 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00009 Paramoeba_aestuarina SoJaBio B1-5/56/2 Neoparamoeba_aestuarina Paramoeba aestuarina Amoebozoa Dactylopodida Eukaryota;Amorphea;Amoebozoa;Discosea;Flabellinia;"core flabellinids";Dactylopodida;Paramoebidae;Paramoeba;"Peilhardi clade";Paramoeba aestuarina;strain SoJaBio-B1-5/56/2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0161 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00010 Vexillifera_sp_DIVA3-564-2 DIVA3 564/2 Vexillifera N/A Amoebozoa Dactylopodida Eukaryota;Amorphea;Amoebozoa;Discosea;Flabellinia;"core flabellinids";Dactylopodida;Vexillifera;strain DIVA3-564/2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0173 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00011 Vannella_sp_DIVA3-517-6-12 DIVA3 517/6/12 Vannella N/A Amoebozoa Vannellida Eukaryota;Amorphea;Amoebozoa;Discosea;Flabellinia;"core flabellinids";Vannellida;Vannella;strain DIVA3-517/6/12 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0168 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00012 Vannella_robusta DIVA3 518/3/11/1/6 Vannella robusta Amoebozoa Vannellida Eukaryota;Amorphea;Amoebozoa;Discosea;Flabellinia;"core flabellinids";Vannellida;Vannella;Vannella robusta;strain DIVA3-518/3/11/1/6 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0166 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00013 Stygamoeba_regulata BSH-02190019 Stygamoeba regulata Amoebozoa other_Flabellinia Eukaryota;Amorphea;Amoebozoa;Discosea;Flabellinia;Stygamoeba;Stygamoeba regulata;strain BSH-02190019 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0447 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00014 Entamoeba_dispar SAW760 Entamoeba dispar Amoebozoa Entamoeba Eukaryota;Amorphea;Amoebozoa;Evosea;Archamoebea;Entamoebidae;Entamoeba;"core entamoebids";"Edispar lineage";Entamoeba dispar;strain SAW760 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/209/125/GCA_000209125.2_JCVI_EDISG_1.0/GCA_000209125.2_JCVI_EDISG_1.0_protein.faa.gz JCVI_EDISG_1.0 10.1093/molbev/msm238 none genome EP00015 Entamoeba_histolytica HM-1:IMSS Entamoeba histolytica Amoebozoa Entamoeba Eukaryota;Amorphea;Amoebozoa;Evosea;Archamoebea;Entamoebidae;Entamoeba;"core entamoebids";"Edispar lineage";Entamoeba histolytica;strain HM 1:IMSS no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/208/925/GCF_000208925.1_JCVI_ESG2_1.0/GCF_000208925.1_JCVI_ESG2_1.0_protein.faa.gz JCVI-ESG2-1.0 10.1038/nature03291,10.1371/journal.pntd.0000716 none genome EP00016 Entamoeba_nuttalli P19 Entamoeba nuttalli Amoebozoa Entamoeba Eukaryota;Amorphea;Amoebozoa;Evosea;Archamoebea;Entamoebidae;Entamoeba;"core entamoebids";"Edispar lineage";Entamoeba nuttalli;strain P19 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/257/125/GCF_000257125.1_ENU1_v1/GCF_000257125.1_ENU1_v1_protein.faa.gz ENU1 v1 N/A none genome EP00017 Entamoeba_invadens IP1 Entamoeba invadens Amoebozoa Entamoeba Eukaryota;Amorphea;Amoebozoa;Evosea;Archamoebea;Entamoebidae;Entamoeba;"core entamoebids";"Einvadens lineage";Entamoeba invadens;strain IP1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/330/505/GCF_000330505.1_EIA2_v2/GCF_000330505.1_EIA2_v2_protein.faa.gz EIA2 v2 10.1186/gb-2013-14-7-r77 none genome EP00019 Armaparvus_languidus ATCC PRA-29 Pessonella_sp Armaparvus languidus Amoebozoa Cutosea Eukaryota;Amorphea;Amoebozoa;Evosea;Cutosea;Armaparvus;Armaparvus languidus;strain ATCC-PRA-29 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0420 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00020 Sapocribrum_chincoteaguense ATCC 50979 Sexangularia_sp Sapocribrum chincoteaguense Amoebozoa Cutosea Eukaryota;Amorphea;Amoebozoa;Evosea;Cutosea;Sapocribrum;Sapocribrum chincoteaguense;strain ATCC-50979 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0437 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00021 Heterostelium_album PN500 Polysphondylium_pallidum Heterostelium album Amoebozoa Dictyostelia Eukaryota;Amorphea;Amoebozoa;Evosea;Eumycetozoa;Dictyostelia;Acytosteliales;Acytosteliaceae;Heterostelium;Heterostelium album;strain PN500 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/825/GCF_000004825.1_PolPal_Dec2009/GCF_000004825.1_PolPal_Dec2009_protein.faa.gz PolPal_Dec2009 10.1101/gr.121137.111 none genome EP00022 Cavenderia_fasciculata SH3 Dictyostelium_fasciculatum,Cavenderia_fasciculatum Cavenderia fasciculata Amoebozoa Dictyostelia Eukaryota;Amorphea;Amoebozoa;Evosea;Eumycetozoa;Dictyostelia;Acytosteliales;Cavenderiaceae;Cavenderia;Cavenderia fasciculata;strain SH3 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/203/815/GCF_000203815.1_DFas_2.0/GCF_000203815.1_DFas_2.0_protein.faa.gz DFas_2.0 10.1101/gr.121137.111 none genome EP00023 Dictyostelium_discoideum AX4 Dictyostelium discoideum Amoebozoa Dictyostelia Eukaryota;Amorphea;Amoebozoa;Evosea;Eumycetozoa;Dictyostelia;Dictyosteliales;Dictyosteliaceae;Dictyostelium;Dictyostelium discoideum;strain AX4 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/695/GCF_000004695.1_dicty_2.7/GCF_000004695.1_dicty_2.7_protein.faa.gz dicty_2.7 10.1038/nature03481 none genome EP00024 Dictyostelium_purpureum QSDP1 Dictyostelium purpureum Amoebozoa Dictyostelia Eukaryota;Amorphea;Amoebozoa;Evosea;Eumycetozoa;Dictyostelia;Dictyosteliales;Dictyosteliaceae;Dictyostelium;Dictyostelium purpureum;strain QSDP1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/190/715/GCF_000190715.1_v1.0/GCF_000190715.1_v1.0_protein.faa.gz v1.0 10.1186/gb-2011-12-2-r20 none genome EP00025 Tieghemostelium_lacteum TK Dictyostelium_lacteum Tieghemostelium lacteum Amoebozoa Dictyostelia Eukaryota;Amorphea;Amoebozoa;Evosea;Eumycetozoa;Dictyostelia;Dictyosteliales;Raperosteliaceae;Tieghemostelium;Tieghemostelium lacteum;strain TK no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/606/155/GCA_001606155.1_ASM160615v1/GCA_001606155.1_ASM160615v1_protein.faa.gz ASM160615v1 10.1038/ncomms12085 none genome EP00026 Physarum_polycephalum N/A Physarum polycephalum Amoebozoa Myxogastria Eukaryota;Amorphea;Amoebozoa;Evosea;Eumycetozoa;Myxogastria;Columellidia;"PS clade";"LDP lineage";Physarales;Physaraceae;Physarum;Physarum polycephalum no http://www.physarum-blast.ovgu.de/Sequences/Physarum_reference_transcriptome.fas.gz Physarum reference transcriptome 10.1093/gbe/evv237 translate mRNA transcriptome EP00027 Filamoeba_nolandi NC-AS-23-1 Filamoeba nolandi Amoebozoa Variosea Eukaryota;Amorphea;Amoebozoa;Evosea;Variosea;Filamoeba;Filamoeba nolandi;strain NC-AS-23-1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0413 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00028 Trichosphaerium_sp_Am-I-7-wt Am-I-7 wt Trichosphaerium N/A Amoebozoa Corycidia Eukaryota;Amorphea;Amoebozoa;Tubulinea;Corycidia;Trichosphaerium;strain Am-I-7 wt no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0405 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00029 Vermamoeba_vermiformis 4391-Kostka Vermamoeba vermiformis Amoebozoa Echinamoebidia Eukaryota;Amorphea;Amoebozoa;Tubulinea;Echinamoebidia;Vermamoeba;Vermamoeba vermiformis;strain 4391-Kostka no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5396399 4391-Kostka transcriptome 10.1093/molbev/msx162 assemble mRNA,translate mRNA transcriptome EP00030 Amastigomonas_sp_AF-17 clone AF-17 N/A N/A Apusomonadida Apusomonadida Eukaryota;Amorphea;Obazoa;Apusomonadida;strain AF-17 no https://datadryad.org/bitstream/handle/10255/dryad.103230/Amastigomonas_sp_transcriptome.fasta.zip Transcriptome assembly of Amastigomonas sp 10.1098/rspb.2015.2802 translate mRNA transcriptome EP00031 Thecamonas_trahens ATCC 50062 Thecamonas trahens Apusomonadida Apusomonadida Eukaryota;Amorphea;Obazoa;Apusomonadida;Thecamonadinae;Thecamonas;Thecamonas trahens;strain ATCC-50062 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/142/905/GCF_000142905.1_TheTra_May2010/GCF_000142905.1_TheTra_May2010_protein.faa.gz TheTra_May2010 N/A none genome EP00032 Breviata_anathema ATCC 50338 Breviata anathema Breviatea Breviatea Eukaryota;Amorphea;Obazoa;Breviatea;Breviata;Breviata anathema;strain ATCC-50338 no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=2709834 LIBEST_028366 10.1016/j.cub.2014.04.033 trimseq,translate mRNA (min length 50),CD-HIT EST EP00033 Pygsuia_biforma PCbi66 Pygsuia biforma Breviatea Breviatea Eukaryota;Amorphea;Obazoa;Breviatea;Pygsuia;Pygsuia biforma;strain PCbi66 no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GC/RY/GCRY01/GCRY01.1.fsa_nt.gz GCRY01000000 10.1098/rspb.2013.1755 translate mRNA transcriptome EP00034 Subulatomonas_tetraspora ATCC 50623 Subulatomonas tetraspora Breviatea Breviatea Eukaryota;Amorphea;Obazoa;Breviatea;Subulatomonas;Subulatomonas tetraspora;strain ATCC-50623 no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GA/BW/GABW01/GABW01.1.fsa_nt.gz GABW01000000 10.2478/prge-2012-0002 translate mRNA (min length 50) transcriptome EP00035 Acanthoeca_spectabilis ATCC PRA-387 Acanthoeca spectabilis Choanoflagellata Acanthoecida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Acanthoecida;Acanthoecidae;Acanthoeca;Acanthoeca spectabilis;strain ATCC-PRA-387 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Acanthoeca_spectabilis Version 2 10.7554/eLife.34226 none transcriptome EP00036 Acanthoeca_sp_10tr 10tr Acanthoeca N/A Choanoflagellata Acanthoecida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Acanthoecida;Acanthoecidae;Acanthoeca;strain 10tr no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0105,MMETSP0106 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00037 Helgoeca_nana ATCC 50073 Acanthoecopsis_unguiculata,Acanthocorbis_nana Helgoeca nana Choanoflagellata Acanthoecida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Acanthoecida;Acanthoecidae;Helgoeca;Helgoeca nana;strain ATCC-50073 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Helgoeca_nana Version 2 10.7554/eLife.34226 none transcriptome EP00038 Savillea_parva ATCC PRA-391 Savillea_micropora,Ellisiella_parva Savillea parva Choanoflagellata Acanthoecida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Acanthoecida;Acanthoecidae;Savillea;Savillea parva;strain ATCC-PRA-391 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Savillea_parva Version 2 10.7554/eLife.34226 none transcriptome EP00039 Didymoeca_costata ATCC PRA-389 Diplotheca_costata,Volkanus_costatus Didymoeca costata Choanoflagellata Acanthoecida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Acanthoecida;Stephanoecidae;"Aunguiculata clade";Didymoeca;Didymoeca costata;strain ATCC-PRA-389 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Didymoeca_costata Version 2 10.7554/eLife.34226 none transcriptome EP00040 Diaphanoeca_grandis ATCC 50111 Diaphanoeca grandis Choanoflagellata Acanthoecida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Acanthoecida;Stephanoecidae;"Dgrandis clade";Diaphanoeca;Diaphanoeca grandis;strain ATCC-50111 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Diaphanoeca_grandis Version 2 10.7554/eLife.34226 none transcriptome EP00041 Stephanoeca_diplocostata ATCC 50456 "Stephanoeca" diplocostata Choanoflagellata Acanthoecida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Acanthoecida;Stephanoecidae;"Sdiplocostata clade";Stephanoeca diplocostata;strain ATCC-50456 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Stephanoeca_diplocostata.France Version 2 10.7554/eLife.34226 none transcriptome EP00042 Codosiga_hollandica ATCC PRA-388 Codosiga hollandica Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Codosiga lineage";Codosiga;Codosiga hollandica;strain ATCC-PRA-388 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Codosiga_hollandica Version 2 10.7554/eLife.34226 none transcriptome EP00043 Microstomoeca_roanoka ATCC 50931 Microstomoeca roanoka Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Microstomoeca lineage";Microstomoeca;Microstomoeca roanoka;strain ATCC-50931 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Microstomoeca_roanoka Version 2 10.7554/eLife.34226 none transcriptome EP00044 Salpingoeca_rosetta ATCC 50818 Proterospongia_sp "Salpingoeca" rosetta Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Microstomoeca lineage";Salpingoeca rosetta;strain ATCC-50818 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/188/695/GCF_000188695.1_Proterospongia_sp_ATCC50818/GCF_000188695.1_Proterospongia_sp_ATCC50818_protein.faa.gz Proterospongia_sp_ATCC50818 10.1186/gb-2013-14-2-r15 none genome EP00045 Choanoeca_perplexa ATCC 50453 Proterospongia_choanojuncta Choanoeca perplexa Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Monosiga lineage";Choanoeca;Choanoeca perplexa;strain ATCC-50453 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Choanoeca_perplexa Version 2 10.7554/eLife.34226 none transcriptome EP00046 Monosiga_brevicollis MX1 Monosiga brevicollis Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Monosiga lineage";Monosiga;Monosiga brevicollis;strain MX1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/865/GCF_000002865.3_V1.0/GCF_000002865.3_V1.0_protein.faa.gz V1.0 10.1038/nature06617 none genome EP00047 Mylnosiga_fluctuans ATCC 50635 Monosiga_ovata Mylnosiga fluctuans Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Mylnosiga lineage";Mylnosiga;Mylnosiga fluctuans;strain ATCC-50635 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Mylnosiga_fluctuans Version 2 10.7554/eLife.34226 none transcriptome EP00048 Salpingoeca_helianthica ATCC 50153 Salpingoeca_napiformis "Salpingoeca" helianthica Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Mylnosiga lineage";Salpingoeca helianthica;strain ATCC-50153 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Salpingoeca_helianthica Version 2 10.7554/eLife.34226 none transcriptome EP00049 Salpingoeca_infusionum ATCC 50559 "Salpingoeca" infusionum Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Sinfusionum lineage";Salpingoeca infusionum;strain ATCC-50559 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Salpingoeca_infusionum Version 2 10.7554/eLife.34226 none transcriptome EP00050 Salpingoeca_kvevrii ATCC 50929 Salpingoeca_pyxidium "Salpingoeca" kvevrii Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Skvevrii lineage";Salpingoeca kvevrii;strain ATCC-50929 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Salpingoeca_kvevrii Version 2 10.7554/eLife.34226 none transcriptome EP00051 Salpingoeca_urceolata ATCC 50560 "Salpingoeca" urceolata Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Skvevrii lineage";Salpingoeca urceolata;strain ATCC-50560 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Salpingoeca_urceolata Version 2 10.7554/eLife.34226 none transcriptome EP00052 Salpingoeca_macrocollata ATCC 50938 Salpingoeca_minuta "Salpingoeca" macrocollata Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Spunica lineage";Salpingoeca macrocollata;strain ATCC-50938 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Salpingoeca_macrocollata Version 2 10.7554/eLife.34226 none transcriptome EP00053 Salpingoeca_punica ATCC 50788 Salpingoeca_amphoridium "Salpingoeca" punica Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Spunica lineage";Salpingoeca punica;strain ATCC-50788 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Salpingoeca_punica Version 2 10.7554/eLife.34226 none transcriptome EP00054 Salpingoeca_dolichothecata ATCC 50959 Salpingoeca_gracilis "Salpingoeca" dolichothecata Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Stuba lineage";Salpingoeca dolichothecata;strain ATCC-50959 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Salpingoeca_dolichothecata Version 2 10.7554/eLife.34226 none transcriptome EP00055 Hartaetosiga_balthica ATCC 50964 Monosiga_gracilis,Codosiga_balthica Hartaetosiga balthica Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;Hartaetosiga;Hartaetosiga balthica;strain ATCC-50964 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Hartaetosiga_balthica Version 2 10.7554/eLife.34226 none transcriptome EP00056 Hartaetosiga_gracilis ATCC 50454 Codosiga_gracilis,Codonosiga_gracilis Hartaetosiga gracilis Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;Hartaetosiga;Hartaetosiga gracilis;strain ATCC-50454 no https://dx.doi.org/10.6084/m9.figshare.5686984.v2 Hartaetosiga_gracilis Version 2 10.7554/eLife.34226 none transcriptome EP00057 Strongylocentrotus_purpuratus N/A Strongylocentrotus purpuratus Metazoa Echinodermata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Ambulacraria;Echinodermata;Eleutherozoa;Echinozoa;Echinoidea;Euechinoidea;Echinoida;Strongylocentrotus;Strongylocentrotus purpuratus no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/235/GCF_000002235.4_Spur_4.2/GCF_000002235.4_Spur_4.2_protein.faa.gz Spur_4.2 10.1126/science.1133609 none genome EP00058 Branchiostoma_floridae N/A Branchiostoma floridae Metazoa Cephalochordata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Cephalochordata;Branchiostoma;Branchiostoma floridae no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/815/GCF_000003815.1_Version_2/GCF_000003815.1_Version_2_protein.faa.gz Version 2 10.1038/nature06967 none genome EP00059 Ciona_intestinalis N/A Ciona intestinalis Metazoa Urochordata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Urochordata;Ascidiacea;APT-clade;Enterogona;Phlebobranchia;Ciona;Ciona intestinalis no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/224/145/GCF_000224145.3_KH/GCF_000224145.3_KH_protein.faa.gz KH 10.1126/science.1080049 none genome EP00060 Petromyzon_marinus N/A Petromyzon marinus Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Cyclostomata;Petromyzontidae;Petromyzon;Petromyzon marinus no ftp://ftp.ensembl.org/pub/release-95/fasta/petromyzon_marinus/pep/ Pmarinus_7.0 10.1038/ng.2568 CD-HIT genome EP00061 Rhincodon_typus N/A Rhincodon typus Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Chondrichthyes;Elasmobranchii;Selachii;Galeomorphii;Galeoidea;Orectolobiformes;Rhincodontidae;Rhincodon;Rhincodon typus no https://figshare.com/articles/LVEK00000000_predicted-genes_faa/3987093 LVEK00000000 version 1 10.1186/s12864-017-3926-9 none genome EP00062 Callorhinchus_milii N/A Callorhinchus milii Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Chondrichthyes;Holocephali;Chimaeriformes;Callorhinchidae;Callorhinchus;Callorhinchus milii no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/165/045/GCF_000165045.1_Callorhinchus_milii-6.1.3/GCF_000165045.1_Callorhinchus_milii-6.1.3_protein.faa.gz Callorhinchus_milii-6.1.3 10.1038/nature12826 none genome EP00063 Salmo_salar N/A Salmo salar Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Actinopterygii;Actinopteri;Neopterygii;Teleostei;Clupeocephala;Euteleosteomorpha;Salmoniformes;Salmonidae;Salmo;Salmo salar no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/233/375/GCF_000233375.1_ICSASG_v2/GCF_000233375.1_ICSASG_v2_protein.faa.gz ICSASG_v2 10.1038/nature17164 none genome EP00064 Thunnus_orientalis N/A Thunnus orientalis Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Actinopterygii;Actinopteri;Neopterygii;Teleostei;Clupeocephala;Euteleosteomorpha;Scombriformes;Scombridae;Thunnus;Thunnus orientalis no http://nrifs.fra.affrc.go.jp/cgi-bin/lime_download/lime.cgi?tuna_Proteins ver_Ba_1.0 10.1073/pnas.1302051110 none genome EP00065 Mola_mola N/A Mola mola Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Actinopterygii;Actinopteri;Neopterygii;Teleostei;Clupeocephala;Euteleosteomorpha;Tetraodontiformes;Molidae;Mola;Mola mola no ftp://ftp.ensembl.org/pub/release-96/fasta/mola_mola/pep/Mola_mola.ASM169857v1.pep.all.fa.gz ASM169857v1 10.1186/s13742-016-0144-3 none genome EP00066 Takifugu_rubripes N/A Takifugu rubripes Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Actinopterygii;Actinopteri;Neopterygii;Teleostei;Clupeocephala;Euteleosteomorpha;Tetraodontiformes;Tetraodontidae;Takifugu;Takifugu rubripes no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/180/615/GCF_000180615.1_FUGU5/GCF_000180615.1_FUGU5_protein.faa.gz FUGU5 10.1126/science.1072104 none genome EP00067 Danio_rerio N/A Danio rerio Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Actinopterygii;Actinopteri;Neopterygii;Teleostei;Clupeocephala;Otomorpha;Cypriniformes;Cyprinidae;Danio;Danio rerio no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/035/GCF_000002035.6_GRCz11/GCF_000002035.6_GRCz11_protein.faa.gz GRCz11 10.1038/nature12111 none genome EP00068 Latimeria_chalumnae N/A Latimeria chalumnae Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Coelacanthiformes;Latimeria;Latimeria chalumnae no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/225/785/GCF_000225785.1_LatCha1/GCF_000225785.1_LatCha1_protein.faa.gz LatCha1 10.1038/nature12027 none genome EP00069 Balaena_mysticetus N/A Balaena mysticetus Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Artiodactyla;Whippomorpha;Cetacea;Mysticeti;Balaenidae;Balaena;Balaena mysticetus no http://alfred.liv.ac.uk/downloads/bowhead_whale/bowhead_whale_proteins.zip v1.0 10.1016/j.celrep.2014.12.008 none genome EP00070 Physeter_macrocephalus N/A Physeter macrocephalus Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Artiodactyla;Whippomorpha;Cetacea;Odontoceti;Physeteridae;Physeter;Physeter macrocephalus no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/837/175/GCF_002837175.2_ASM283717v2/GCF_002837175.2_ASM283717v2_protein.faa.gz ASM283717v2 10.1093/gbe/evx187 none genome EP00071 Canis_lupus N/A Canis lupus Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Carnivora;Canidae;Canis;Canis lupus;strain familiaris no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/285/GCF_000002285.3_CanFam3.1/GCF_000002285.3_CanFam3.1_protein.faa.gz CanFam3.1 10.1038/nature04338 none genome EP00072 Mus_musculus N/A Mus musculus Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Glires;Rodentia;Muridae;Mus;Mus musculus no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/635/GCF_000001635.26_GRCm38.p6/GCF_000001635.26_GRCm38.p6_protein.faa.gz GRCm38.p6 10.1038/nature01262 none genome EP00073 Rattus_norvegicus N/A Rattus norvegicus Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Glires;Rodentia;Muridae;Rattus;Rattus norvegicus no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/895/GCF_000001895.5_Rnor_6.0/GCF_000001895.5_Rnor_6.0_protein.faa.gz Rnor_6.0 10.1038/nature02426 none genome EP00074 Homo_sapiens N/A Homo sapiens Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Mammalia;Theria;Eutheria;Primates;Catarrhini;Hominidae;Homo;Homo sapiens no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.38_GRCh38.p12/GCF_000001405.38_GRCh38.p12_protein.faa.gz GRCh38.p12 10.1038/35057062 none genome EP00075 Anas_platyrhynchos N/A Anas platyrhynchos Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Sauropsida;Archelosauria;Archosauria;Aves;Neognathae;Galloanserae;Anseriformes;Anas;Anas platyrhynchos no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/850/225/GCF_003850225.1_IASCAAS_PekingDuck_PBH1.5/GCF_003850225.1_IASCAAS_PekingDuck_PBH1.5_protein.faa.gz IASCAAS_PekingDuck_PBH1.5 10.1038/ng.2657 none genome EP00076 Gallus_gallus N/A Gallus gallus Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Sauropsida;Archelosauria;Archosauria;Aves;Neognathae;Galloanserae;Galliformes;Phasianidae;Gallus;Gallus gallus no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/315/GCF_000002315.6_GRCg6a/GCF_000002315.6_GRCg6a_protein.faa.gz GRCg6a 10.1038/nature03154 none genome EP00077 Pelodiscus_sinensis N/A Pelodiscus sinensis Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Sauropsida;Archelosauria;Testudines;Cryptodira;Trionychidae;Pelodiscus;Pelodiscus sinensis no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/230/535/GCF_000230535.1_PelSin_1.0/GCF_000230535.1_PelSin_1.0_protein.faa.gz PelSin_1.0 10.1038/ng.2615 none genome EP00078 Anolis_carolinensis N/A Anolis carolinensis Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amniota;Sauropsida;Lepidosauria;Squamata;Unidentata;Episquamata;Iguania;Dactyloidae;Anolis;Anolis carolinensis no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/745/GCF_000090745.1_AnoCar2.0/GCF_000090745.1_AnoCar2.0_protein.faa.gz AnoCar2.0 10.1038/nature10390 none genome EP00079 Xenopus_tropicalis N/A Xenopus tropicalis Metazoa Vertebrata Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Deuterostomia;Chordata;Vertebrata;Gnathostomata;Teleostomi;Sarcopterygii;Tetrapoda;Amphibia;Anura;Pipoidea;Pipidae;Xenopus;Xenopus tropicalis no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/195/GCF_000004195.3_Xenopus_tropicalis_v9.1/GCF_000004195.3_Xenopus_tropicalis_v9.1_protein.faa.gz Xenopus_tropicalis_v9.1 10.1126/science.1183670 none genome EP00080 Pristionchus_pacificus N/A Pristionchus pacificus Metazoa Nematoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Nematozoa;Nematoda;Chromadoria;Rhabditida;Rhabditina;Diplogasteromorpha;Diplogasteroidea;Neodiplogasteridae;Pristionchus;Pristionchus pacificus no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/180/635/GCA_000180635.3_El_Paco/GCA_000180635.3_El_Paco_protein.faa.gz El Paco 10.1038/ng.227 none genome EP00081 Caenorhabditis_elegans N/A Caenorhabditis elegans Metazoa Nematoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Nematozoa;Nematoda;Chromadoria;Rhabditida;Rhabditina;Rhabditomorpha;Peloderidae;Caenorhabditis;Caenorhabditis elegans no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/985/GCF_000002985.6_WBcel235/GCF_000002985.6_WBcel235_protein.faa.gz WBcel235 10.1126/science.282.5396.2012 none genome EP00082 Ixodes_scapularis N/A Ixodes scapularis Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Chelicerata;"core C";Arachnida;Acari;Parasitiformes;Ixodida;Ixodidae;Ixodes;Ixodes scapularis no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/208/615/GCF_000208615.1_JCVI_ISG_i3_1.0/GCF_000208615.1_JCVI_ISG_i3_1.0_protein.faa.gz JCVI_ISG_i3_1.0 10.1038/ncomms10507 none genome EP00083 Stegodyphus_mimosarum N/A Stegodyphus mimosarum Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Chelicerata;"core C";Arachnida;Araneae;Araneomorphae;Entelegynae;Eresoidea;Eresidae;Stegodyphus;Stegodyphus mimosarum no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/611/955/GCA_000611955.2_Stegodyphus_mimosarum_v1/GCA_000611955.2_Stegodyphus_mimosarum_v1_protein.faa.gz Stegodyphus_mimosarum_v1 10.1038/ncomms4765 none genome EP00084 Strigamia_maritima N/A Strigamia maritima Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Myriapoda;Chilopoda;Pleurostigmophora;Geophilomorpha;Linotaeniidae;Strigamia;Strigamia maritima no ftp://ftp.ensemblgenomes.org/pub/metazoa/release-42/fasta/strigamia_maritima/pep/Strigamia_maritima.Smar1.pep.all.fa.gz Smar_1.0 10.1371/journal.pbio.1002005 none genome EP00085 Daphnia_pulex N/A Daphnia pulex Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Branchiopoda;Diplostraca;Cladocera;Daphniidae;Daphnia;Daphnia pulex no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/187/875/GCA_000187875.1_V1.0/GCA_000187875.1_V1.0_protein.faa.gz V1.0 10.1126/science.1197761 none genome EP00086 Labidocera_madurae N/A Labidocera madurae Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Calanoida;"centropagoids";"centropagids";Pontellidae;Labidocera;Labidocera madurae no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GF/WO/GFWO01/GFWO01.1.fsa_nt.gz GFWO01000000 10.1371/journal.pone.0186794 translate mRNA transcriptome EP00087 Eurytemora_affinis N/A Eurytemora affinis Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Calanoida;"centropagoids";"centropagids";Temoridae;Eurytemora;Eurytemora affinis no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/591/075/GCF_000591075.1_Eaff_2.0/GCF_000591075.1_Eaff_2.0_protein.faa.gz Eaff_2.0 10.1093/molbev/msx147 none genome EP00088 Acartia_fossae N/A Acartia fossae Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Calanoida;"centropagoids";Acartiidae;Acartia;Acartia fossae no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1218785 Acartia_fossae_transcriptome 10.1111/mec.12781 assemble mRNA,translate mRNA transcriptome EP00089 Calanus_finmarchicus N/A Calanus finmarchicus Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Calanoida;"megacalanoids";Calanidae;Calanus;Calanus finmarchicus no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GA/XK/GAXK01/GAXK01.1.fsa_nt.gz GAXK01000000 10.1371/journal.pone.0088589 translate mRNA transcriptome EP00090 Calanus_glacialis N/A Calanus glacialis Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Calanoida;"megacalanoids";Calanidae;Calanus;Calanus glacialis no https://www.ncbi.nlm.nih.gov/Traces/study/?WebEnv=NCID_1_23063805_130.14.22.33_5555_1553759067_712965539_0MetA0_S_HStore&query_key=12 whole body homogenate 10.1002/ece3.3063 assemble mRNA,translate mRNA transcriptome EP00091 Calanus_sinicus N/A Calanus sinicus Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Calanoida;"megacalanoids";Calanidae;Calanus;Calanus sinicus no https://www.ncbi.nlm.nih.gov/sra/SRX214617 454 GS FLX 10.1371/journal.pone.0063741 assemble mRNA,translate mRNA transcriptome EP00092 Neocalanus_flemingeri N/A Neocalanus flemingeri Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Calanoida;"megacalanoids";Calanidae;Neocalanus;Neocalanus flemingeri no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GF/UD/GFUD01/GFUD01.1.fsa_nt.gz GFUD01000000 10.1016/j.margen.2017.09.002 translate mRNA transcriptome EP00093 Oithona_nana N/A Oithona nana Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Podoplea;Cyclopoida;Oithonida;"core O";"CO clade";Oithonidae;Oithona;Oithona nana no ftp://ftp.sra.ebi.ac.uk/vol1/ERZ376/ERZ376924/O_nana.PRJEB18938.annot.embl.gz O_NANA_1 10.1111/mec.14214 extractfeat,transeq genome EP00094 Tigriopus_californicus N/A Tigriopus californicus Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Podoplea;Harpacticoida;"core H";Harpacticidae;Tigriopus;Tigriopus californicus no https://i5k.nal.usda.gov/data/Arthropoda/tigcal-%28Tigriopus_californicus%29/Current%20Genome%20Assembly/2.Official%20or%20Primary%20Gene%20Set/TCALIF_v1.0/TCALIF_proteins_v1.0.fasta TCALIF_v1.0 N/A none genome EP00095 Tigriopus_kingsejongensis N/A Tigriopus kingsejongensis Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Podoplea;Harpacticoida;"core H";Harpacticidae;Tigriopus;Tigriopus kingsejongensis no https://licebase.org/sites/default/files/tking-annotated-proteome-withgeneid.fasta.zip tking-annotated-proteome-withgeneid 10.1093/gigascience/giw010 none genome EP00096 Caligus_rogercresseyi N/A Caligus rogercresseyi Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Podoplea;Siphonostomatoida;"CDHKP clade";"caligiforms";Caligidae;Caligus;Caligus rogercresseyi no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1106551 6 salmon louse stage 10.1371/journal.pone.0092239 assemble mRNA,translate mRNA transcriptome EP00097 Lepeophtheirus_salmonis N/A Lepeophtheirus salmonis Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Copepoda;Podoplea;Siphonostomatoida;"CDHKP clade";"caligiforms";Caligidae;Lepeophtheirus;Lepeophtheirus salmonis no ftp://ftp.ensemblgenomes.org/pub/metazoa/release-40/fasta/lepeophtheirus_salmonis/pep/Lepeophtheirus_salmonis.LSalAtl2s.pep.all.fa.gz lsal_atl_canada_female_v1 N/A none genome EP00098 Tribolium_castaneum N/A Tribolium castaneum Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Hexapoda;Insecta;Pterygota;Neoptera;Holometabola;Coleoptera;Polyphaga;Cucujiformia;Tenebrionoidea;Tenebrionidae;Tribolium;Tribolium castaneum no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/335/GCF_000002335.3_Tcas5.2/GCF_000002335.3_Tcas5.2_protein.faa.gz Tcas5.2 10.1038/nature06784 none genome EP00099 Drosophila_melanogaster N/A Drosophila melanogaster Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Hexapoda;Insecta;Pterygota;Neoptera;Holometabola;Diptera;Brachycera;Muscomorpha;Acalyptratae;Drosophilidae;Drosophila;Drosophila melanogaster no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/215/GCF_000001215.4_Release_6_plus_ISO1_MT/GCF_000001215.4_Release_6_plus_ISO1_MT_protein.faa.gz Release 6 plus ISO1 MT 10.1126/science.287.5461.2185 none genome EP00100 Culex_quinquefasciatus N/A Culex quinquefasciatus Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Hexapoda;Insecta;Pterygota;Neoptera;Holometabola;Diptera;Nematocera;Culicomorpha;Culicidae;Culex;Culex quinquefasciatus no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/185/GCF_000209185.1_CulPip1.0/GCF_000209185.1_CulPip1.0_protein.faa.gz CulPip1.0 10.1126/science.1191864 none genome EP00101 Apis_mellifera N/A Apis mellifera Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Hexapoda;Insecta;Pterygota;Neoptera;Holometabola;Hymenoptera;Apocrita;Aculeata;Apoidea;Apidae;Apis;Apis mellifera no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/254/395/GCF_003254395.2_Amel_HAv3.1/GCF_003254395.2_Amel_HAv3.1_protein.faa.gz Amel_HAv3.1 10.1038/nature05260 none genome EP00102 Acyrthosiphon_pisum N/A Acyrthosiphon pisum Metazoa Arthropoda Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Ecdysozoa;Panarthropoda;Arthropoda;Mandibulata;Pancrustacea;Hexapoda;Insecta;Pterygota;Neoptera;Paraneoptera;Hemiptera;Sternorrhyncha;Aphididae;Acyrthosiphon;Acyrthosiphon pisum no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/142/985/GCF_000142985.2_Acyr_2.0/GCF_000142985.2_Acyr_2.0_protein.faa.gz Acyr_2.0 10.1371/journal.pbio.1000313 none genome EP00103 Capitella_teleta N/A Capitella teleta Metazoa Annelida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Lophotrochozoa;Annelida;Pleistoannelida;Sedentaria;"core sedentarids";"CEO clade";Capitellidae;Capitella;Capitella teleta no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/328/365/GCA_000328365.1_Capca1/GCA_000328365.1_Capca1_protein.faa.gz Capca1 10.1038/nature11696 none genome EP00104 Lingula_anatina N/A Lingula anatina Metazoa other_Lophotrochozoa Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Lophotrochozoa;Brachiopoda;Lingulidae;Lingula;Lingula anatina no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/039/355/GCF_001039355.2_LinAna2.0/GCF_001039355.2_LinAna2.0_protein.faa.gz LinAna2.0 10.1038/ncomms9301 none genome EP00105 Crassostrea_gigas N/A Crassostrea gigas Metazoa Mollusca Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Lophotrochozoa;Mollusca;Conchifera;Bivalvia;Pteriomorphia;Ostreoida;Ostreidae;Crassostrea;Crassostrea gigas no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/297/895/GCF_000297895.1_oyster_v9/GCF_000297895.1_oyster_v9_protein.faa.gz oyster_v9 10.1038/nature11413 none genome EP00106 Octopus_bimaculoides N/A Octopus bimaculoides Metazoa Mollusca Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Lophotrochozoa;Mollusca;Conchifera;Cephalopoda;Coleoidea;Octopodiformes;Octopoda;Incirrata;Octopus;Octopus bimaculoides no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/194/135/GCF_001194135.1_Octopus_bimaculoides_v2_0/GCF_001194135.1_Octopus_bimaculoides_v2_0_protein.faa.gz Octopus_bimaculoides_v2_0 10.1038/nature14668 none genome EP00107 Lottia_gigantea N/A Lottia gigantea Metazoa Mollusca Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Lophotrochozoa;Mollusca;Conchifera;Gastropoda;Patellogastropoda;Lottiidae;Lottia;Lottia gigantea no ftp://ftp.ensemblgenomes.org/pub/metazoa/release-42/fasta/lottia_gigantea/pep/Lottia_gigantea.Lotgi1.pep.all.fa.gz Lotgi1 10.1038/nature11696 none genome EP00108 Taenia_solium N/A Taenia solium Metazoa Platyhelminthes Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Lophotrochozoa;Platyhelminthes;Rhabditophora;Euneoophora;Neodermata;Cestoda;Eucestoda;Taenia;Taenia solium no ftp://ftp.ebi.ac.uk/pub/databases/wormbase/parasite/releases/WBPS12/species/taenia_solium/PRJNA170813/taenia_solium.PRJNA170813.WBPS12.protein.fa.gz Tsolium_Mexico_v1 10.1038/nature12031 none genome EP00109 Schistosoma_mansoni N/A Schistosoma mansoni Metazoa Platyhelminthes Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Bilateria;Protostomia;Lophotrochozoa;Platyhelminthes;Rhabditophora;Euneoophora;Neodermata;Trematoda;Digenea;Schistosoma;Schistosoma mansoni no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/237/925/GCF_000237925.1_ASM23792v2/GCF_000237925.1_ASM23792v2_protein.faa.gz ASM23792v2 10.1038/nature08160 none genome EP00110 Nematostella_vectensis N/A Nematostella vectensis Metazoa Cnidaria Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Cnidaria;Anthozoa;Hexacorallia;Actiniaria;Anenthemonae;"edwardsioids";Nematostella;Nematostella vectensis no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/225/GCF_000209225.1_ASM20922v1/GCF_000209225.1_ASM20922v1_protein.faa.gz ASM20922v1 10.1126/science.1139158 none genome EP00111 Clytia_hemisphaerica N/A Clytia hemisphaerica Metazoa Cnidaria Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Cnidaria;Medusozoa;Hydrozoa;Hydroidolina;Leptothecata;Clytia;Clytia hemisphaerica no http://marimba.obs-vlfr.fr/node/237573 v1.0 10.1038/s41559-019-0833-2, 10.1101/369959 none genome EP00112 Aurelia_sp_Birch-Aquarium-sp1 Birch_Aquarium_sp.1 Aurelia N/A Metazoa Cnidaria Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Cnidaria;Medusozoa;Scyphozoa;Discomedusae;Aurelia;strain Birch-Aquarium-1 no http://www.davidadlergold.com/jellyfish v1.2 10.1038/s41559-018-0719-8 none genome EP00113 Trichoplax_adhaerens N/A Trichoplax adhaerens Metazoa Placozoa Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Placozoa;Trichoplax;Trichoplax adhaerens no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/275/GCF_000150275.1_v1.0/GCF_000150275.1_v1.0_protein.faa.gz v1.0 10.1038/nature07191 none genome EP00114 Trichoplax_sp_H2 H2 Trichoplax N/A Metazoa Placozoa Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;"parahoxozoa";Placozoa;Trichoplax;Trichoplax;strain H2 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/344/405/GCA_003344405.1_TrispH2_1.0/GCA_003344405.1_TrispH2_1.0_protein.faa.gz TrispH2_1.0 10.1038/s41598-018-29400-y none genome EP00115 Mnemiopsis_leidyi N/A Mnemiopsis leidyi Metazoa Ctenophora Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;Ctenophora;"core lobates";Mnemiopsis;Mnemiopsis leidyi no ftp://ftp.ensemblgenomes.org/pub/metazoa/release-42/fasta/mnemiopsis_leidyi/pep/Mnemiopsis_leidyi.MneLei_Aug2011.pep.all.fa.gz MneLei_Aug2011 10.1126/science.1242592 none genome EP00116 Pleurobrachia_bachei N/A Pleurobrachia bachei Metazoa Ctenophora Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Animalia;Ctenophora;"pleurobrachiids";Pleurobrachia;Pleurobrachia bachei no https://neurobase.rc.ufl.edu/pleurobrachia/downloadFasta?id=38 N/A 10.1038/nature13400 none genome EP00117 Sycon_ciliatum N/A Sycon ciliatum Metazoa Porifera Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Porifera;"CalHom clade";Calcarea;Calcaronea;"18S B clade";Sycon;Sycon ciliatum no http://www.compagen.org/datasets/SCIL_T-PEP_130802.zip SCIL_T-PEP_130802 10.1038/nature13881 none genome EP00118 Oscarella_pearsei N/A Oscarella pearsei Metazoa Porifera Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Porifera;"CalHom clade";Homoscleromorpha;Oscarellidae;Oscarella;Oscarella pearsei no http://www.compagen.org/datasets/OCAR_T-PEP_130911.zip OCAR_T-PEP_130911 10.1371/journal.pone.0183002 none transcriptome EP00119 Amphimedon_queenslandica N/A "Amphimedon" queenslandica Metazoa Porifera Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Porifera;"DemHex clade";Demospongiae;Haploscleromorpha;"ABD group";"clade B";Amphimedon queenslandica no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/795/GCF_000090795.1_v1.0/GCF_000090795.1_v1.0_protein.faa.gz v1.0 10.1038/nature09201 none genome EP00120 Capsaspora_owczarzaki ATCC 30864 Capsaspora owczarzaki Filasterea Filasterea Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Filasterea;Capsaspora;Capsaspora owczarzaki;strain ATCC-30864 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/315/GCF_000151315.2_C_owczarzaki_V2/GCF_000151315.2_C_owczarzaki_V2_protein.faa.gz C_owczarzaki_V2 10.1038/ncomms3325 none genome EP00121 Abeoforma_whisleri N/A Abeoforma whisleri Ichthyosporea Ichthyophonida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Ichthyosporea;Ichthyophonida;"ACP clade";Abeoforma;Abeoforma whisleri no https://figshare.com/articles/Genome_-_Abeoforma_whisleri_/5426458 Awhi_long.pep 10.7554/eLife.26036 none genome EP00122 Pirum_gemmata N/A Pirum gemmata Ichthyosporea Ichthyophonida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Ichthyosporea;Ichthyophonida;"ACP clade";Pirum;Pirum gemmata no https://figshare.com/articles/Genome_-_Pirum_gemmata/5426506 Pgem_long.pep Version 2 10.7554/eLife.26036 none genome EP00123 Amoebidium_parasiticum JAP-7-2 Amoebidium parasiticum Ichthyosporea Ichthyophonida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Ichthyosporea;Ichthyophonida;"AEI clade";Amoebidium;Amoebidium parasiticum; strain JAP-7-2 no https://figshare.com/articles/Trancriptome_-_Amoebidium_parasiticum/4714243 Apar_Trinity_nonfilt_contigs Version 2 10.1016/j.cub.2015.07.053 none transcriptome EP00124 Ichthyophonus_hoferi N/A Ichthyophonus hoferi Ichthyosporea Ichthyophonida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Ichthyosporea;Ichthyophonida;"AEI clade";Ichthyophonus;Ichthyophonus hoferi no https://figshare.com/articles/Genome_-_Ichthyophonus_hoferi/5426488 Ihof_long.pep 10.7554/eLife.26036 none genome EP00125 Sphaeroforma_arctica JP610 Sphaeroforma arctica Ichthyosporea Ichthyophonida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Ichthyosporea;Ichthyophonida;"CS clade";Sphaeroforma;Sphaeroforma arctica;strain JP610 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/186/125/GCF_001186125.1_Spha_arctica_JP610_V1/GCF_001186125.1_Spha_arctica_JP610_V1_protein.faa.gz Spha_arctica_JP610_V1 10.7554/eLife.26036 none genome EP00126 Sphaerothecum_destruens N/A Sphaerothecum destruens Ichthyosporea Rhinosporidaceae Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Ichthyosporea;Rhinosporidaceae;Sphaerothecum;Sphaerothecum destruens no https://figshare.com/articles/Transcriptome_-_Sphaerothecum_destruens_rosette_agent_/5446489 clean 10.1016/j.cub.2015.07.053 none transcriptome EP00127 Corallochytrium_limacisporum Hawaii Corallochytrium limacisporum Pluriformea Pluriformea Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Pluriformea;Corallochytrium;Corallochytrium limacisporum;strain Hawaii no https://figshare.com/articles/Genome_-_Corallochytrium_limacisporum/5426470 Clim_long.pep 10.7554/eLife.26036 none genome EP00128 Syssomonas_multiformis Colp12 Syssomonas multiformis Pluriformea Pluriformea Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Pluriformea;Syssomonas;Syssomonas multiformis;strain Colp12 no https://datadryad.org/resource/doi:10.5061/dryad.26bv4/2 Colp-12_sorted 10.1016/j.cub.2017.06.006 none transcriptome EP00129 Allomyces_macrogynus ATCC 38327 Allomyces macrogynus Fungi Blastocladiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Blastocladiomycota;Blastocladiales;Allomyces;Allomyces macrogynus;strain ATCC-38327 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/151/295/GCA_000151295.1_A_macrogynus_V3/GCA_000151295.1_A_macrogynus_V3_protein.faa.gz A_macrogynus_V3 10.1016/j.tig.2007.01.005 none genome EP00130 Batrachochytrium_dendrobatidis JAM81 Batrachochytrium dendrobatidis Fungi Chytridiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Chytridiomycota;Chytridiomycetes;Rhizophydiales;Batrachochytrium;Batrachochytrium dendrobatidis;strain JAM81 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/203/795/GCF_000203795.1_v1.0/GCF_000203795.1_v1.0_protein.faa.gz v1.0 10.1371/journal.ppat.1002338 none genome EP00131 Spizellomyces_punctatus DAOM BR117 Spizellomyces punctatus Fungi Chytridiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Chytridiomycota;Chytridiomycetes;Spizellomycetales;Spizellomyces;Spizellomyces punctatus;strain DAOM-BR117 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/565/GCF_000182565.1_S_punctatus_V1/GCF_000182565.1_S_punctatus_V1_protein.faa.gz S_punctatus_V1 10.1128/genomeA.00849-16 none genome EP00132 Gonapodya_prolifera JEL478 Gonapodya prolifera Fungi Chytridiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Chytridiomycota;Monoblepharidomycetes;Monoblepharidales;Gonapodya;Gonapodya prolifera;strain JEL478 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/574/975/GCA_001574975.1_Ganpr1/GCA_001574975.1_Ganpr1_protein.faa.gz Ganpr1 10.1093/gbe/evv090 none genome EP00133 Fusarium_graminearum PH-1 Fusarium graminearum Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Pezizomycotina;"leotiomyceta";"sordariomyceta";Sordariomycetes;Fusarium;Fusarium graminearum;strain PH-1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/240/135/GCF_000240135.3_ASM24013v3/GCF_000240135.3_ASM24013v3_protein.faa.gz ASM24013v3 10.1186/s12864-016-3371-1 none genome EP00134 Neurospora_crassa OR74A Neurospora crassa Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Pezizomycotina;"leotiomyceta";"sordariomyceta";Sordariomycetes;Neurospora;Neurospora crassa;strain OR74A no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/925/GCF_000182925.2_NC12/GCF_000182925.2_NC12_protein.faa.gz NC12 10.1038/nature01554 none genome EP00135 Aspergillus_nidulans FGSC A4 Aspergillus nidulans Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Pezizomycotina;"leotiomyceta";Eurotiomycetes;Aspergillus;Aspergillus nidulans;strain FGSC-A4 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/205/GCF_000149205.2_ASM14920v2/GCF_000149205.2_ASM14920v2_protein.faa.gz ASM14920v2 10.1038/nature04341,10.1016/j.fgb.2008.12.003 none genome EP00136 Aspergillus_niger CBS 513.88 Aspergillus niger Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Pezizomycotina;"leotiomyceta";Eurotiomycetes;Aspergillus;Aspergillus niger;strain CBS-513.88 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/855/GCF_000002855.3_ASM285v2/GCF_000002855.3_ASM285v2_protein.faa.gz ASM285v2 10.1038/nbt1282 none genome EP00137 Aspergillus_oryzae 3.042 Aspergillus oryzae Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Pezizomycotina;"leotiomyceta";Eurotiomycetes;Aspergillus;Aspergillus oryzae;strain 3.042 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/269/785/GCA_000269785.2_AspOry3042/GCA_000269785.2_AspOry3042_protein.faa.gz AspOry3042 10.1128/EC.00160-12 none genome EP00138 Coccidioides_posadasii C735 delta SOWgp Coccidioides posadasii Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Pezizomycotina;"leotiomyceta";Eurotiomycetes;Coccidioides;Coccidioides posadasii;strain C735-delta-SOWgp no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/335/GCF_000151335.2_JCVI-cpa1-1.0/GCF_000151335.2_JCVI-cpa1-1.0_protein.faa.gz JCVI-cpa1-1.0 10.1101/gr.103911.109 none genome EP00139 Candida_albicans SC5314 Candida albicans Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Saccharomycotina;Debaryomycetaceae;Candida;Candida albicans;strain SC5314 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/965/GCF_000182965.3_ASM18296v3/GCF_000182965.3_ASM18296v3_protein.faa.gz ASM18296v3 10.1073/pnas.0401648101 none genome EP00140 Debaryomyces_hansenii CBS767 Debaryomyces hansenii Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Saccharomycotina;Debaryomycetaceae;Debaryomyces;Debaryomyces hansenii;strain CBS767 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/445/GCF_000006445.2_ASM644v2/GCF_000006445.2_ASM644v2_protein.faa.gz ASM644v2 10.1038/nature02579 none genome EP00141 Yarrowia_lipolytica CLIB99 Yarrowia lipolytica Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Saccharomycotina;Dipodascaceae;Yarrowia;Yarrowia lipolytica;strain CLIB99 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/525/GCF_000002525.2_ASM252v1/GCF_000002525.2_ASM252v1_protein.faa.gz ASM252v1 10.1038/nature02579 none genome EP00142 Kluyveromyces_lactis CLIB210 Kluyveromyces lactis Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Saccharomycotina;Saccharomycetaceae;Kluyveromyces;Kluyveromyces lactis;strain CLIB210 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/515/GCF_000002515.2_ASM251v1/GCF_000002515.2_ASM251v1_protein.faa.gz ASM251v1 10.1038/nature02579 none genome EP00143 Candida_glabrata CBS138 Candida glabrata Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Saccharomycotina;Saccharomycetaceae;Nakaseomyces;Candida glabrata;strain CBS138 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/545/GCF_000002545.3_ASM254v2/GCF_000002545.3_ASM254v2_protein.faa.gz ASM254v2 10.1038/nature02579 none genome EP00144 Saccharomyces_cerevisiae S288C Saccharomyces cerevisiae Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;"saccharomyceta";Saccharomycotina;Saccharomycetaceae;Saccharomyces;Saccharomyces cerevisiae;strain S288C no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/146/045/GCF_000146045.2_R64/GCF_000146045.2_R64_protein.faa.gz R64 10.1126/science.274.5287.546 none genome EP00145 Schizosaccharomyces_pombe Urs Leupold 972h- Schizosaccharomyces pombe Fungi Ascomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Ascomycota;Taphrinomycotina;Schizosaccharomyces;Schizosaccharomyces pombe;strain Urs-Leupold-972h no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/945/GCF_000002945.1_ASM294v2/GCF_000002945.1_ASM294v2_protein.faa.gz ASM294v2 10.1038/nature724 none genome EP00146 Coprinopsis_cinerea Okayama 7 #130 Coprinopsis cinerea Fungi Basidiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Basidiomycota;Agaricomycotina;Agaricomycetes;Agaricomycetidae;Agaricales;Psathyrellaceae;Coprinopsis;Coprinopsis cinerea;strain Okayama-7-#130 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/182/895/GCF_000182895.1_CC3/GCF_000182895.1_CC3_protein.faa.gz CC3 10.1073/pnas.1003391107 none genome EP00147 Laccaria_bicolor S238N-H82 Laccaria bicolor Fungi Basidiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Basidiomycota;Agaricomycotina;Agaricomycetes;Agaricomycetidae;Agaricales;Tricholomataceae;Laccaria;Laccaria bicolor;strain S238N-H82 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/565/GCF_000143565.1_V1.0/GCF_000143565.1_V1.0_protein.faa.gz V1.0 10.1038/nature06556 none genome EP00148 Cryptococcus_gattii CA1873 Cryptococcus_bacillisporus Cryptococcus gattii Fungi Basidiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Basidiomycota;Agaricomycotina;Tremellomycetes;Tremellales;Cryptococcaceae;Cryptococcus;Cryptococcus gattii;strain CA1873 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/855/695/GCA_000855695.1_Cryp_gatt_CA1873_V1/GCA_000855695.1_Cryp_gatt_CA1873_V1_protein.faa.gz Cryp_gatt_CA1873_V1 10.1128/mBio.00868-15 none genome EP00149 Cryptococcus_neoformans var. grubii H99 Cryptococcus neoformans Fungi Basidiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Basidiomycota;Agaricomycotina;Tremellomycetes;Tremellales;Cryptococcaceae;Cryptococcus;Cryptococcus neoformans;strain grubii-H99 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/245/GCF_000149245.1_CNA3/GCF_000149245.1_CNA3_protein.faa.gz CNA3 10.1371/journal.pgen.1004261 none genome EP00150 Ustilago_maydis 521 Ustilago maydis Fungi Basidiomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Dikarya;Basidiomycota;Ustilaginomycotina;Ustilaginomycetes;Ustilaginales;Ustilaginaceae;Ustilago;Ustilago maydis;strain 521 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/328/475/GCF_000328475.2_Umaydis521_2.0/GCF_000328475.2_Umaydis521_2.0_protein.faa.gz Umaydis521_2.0 10.1038/nature05248 none genome EP00151 Rhizophagus_irregularis DAOM 181602=DAOM 197198 Rhizophagus irregularis Fungi Mucoromycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Mucoromycota;Glomeromycotina;Glomerales;Glomeraceae;Rhizophagus;Rhizophagus irregularis;strain DAOM-181602=DAOM-197198 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/439/145/GCF_000439145.1_ASM43914v3/GCF_000439145.1_ASM43914v3_protein.faa.gz ASM43914v3 10.1073/pnas.1313452110 none genome EP00152 Rhizopus_delemar RO3 Rhizopus delemar Fungi Mucoromycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Mucoromycota;Mucoromycotina;Mucorales;Mucorineae;Rhizopodaceae;Rhizopus;Rhizopus delemar;strain RO3 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/149/305/GCA_000149305.1_RO3/GCA_000149305.1_RO3_protein.faa.gz RO3 10.1371/journal.pgen.1000549 none genome EP00153 Phycomyces_blakesleeanus NRRL 1555(-) Phycomyces blakesleeanus Fungi Mucoromycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Mucoromycota;Mucoromycotina;Mucorales;Phycomycetaceae;Phycomyces;Phycomyces blakesleeanus;strain NRRL-1555(-) no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/638/985/GCF_001638985.1_Phybl2/GCF_001638985.1_Phybl2_protein.faa.gz Phybl2 10.1016/j.cub.2016.04.038 none genome EP00154 Conidiobolus_coronatus NRRL 28638 Conidiobolus coronatus Fungi Zoopagomycota Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"core Fungi";Zoopagomycota;Entomophthoromycotina;Entomophthorales;Ancylistaceae;Conidiobolus;Conidiobolus coronatus;strain NRRL-28638 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/566/745/GCA_001566745.1_Conidiobolus_coronatus_NRRL28638/GCA_001566745.1_Conidiobolus_coronatus_NRRL28638_protein.faa.gz Conidiobolus coronatus NRRL28638 10.1093/gbe/evv090 none genome EP00155 Edhazardia_aedis USNM 41457 Edhazardia aedis Fungi canonical_Microsporidia Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"cryptomycota";Microsporidia;"canonical microsporidia";Culicosporidae;Edhazardia;Edhazardia aedis;strain USNM-41457 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/230/595/GCA_000230595.3_Edha_aedis_V4b/GCA_000230595.3_Edha_aedis_V4b_protein.faa.gz Edha_aedis_V4b 10.1038/ncomms8121 none genome EP00156 Nosema_bombycis CQ1 Nosema bombycis Fungi canonical_Microsporidia Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"cryptomycota";Microsporidia;"canonical microsporidia";Nosematidae;Nosema;Nosema bombycis;strain CQ1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/383/075/GCA_000383075.1_NosBomCQ1_v1.0/GCA_000383075.1_NosBomCQ1_v1.0_protein.faa.gz NosBomCQ1_v1.0 10.1186/1471-2164-14-186 none genome EP00157 Rozella_allomycis CSF55 Rozella allomycis Fungi Rozellida Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;"cryptomycota";Rozellida;Rozella;Rozella allomycis;strain CSF55 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/015/GCA_000442015.1_Rozella_k41_t100/GCA_000442015.1_Rozella_k41_t100_protein.faa.gz Rozella_k41_t100 10.1016/j.cub.2013.06.057 none genome EP00158 Paraphelidium_tribonemae N/A Paraphelidium tribonemae Fungi Aphelidea Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Fungi;Aphelidea;Paraphelidium;Paraphelidium tribonemae no https://doi.org/10.6084/m9.figshare.7339469.v1 Version 1.5 10.1038/s42003-018-0235-z none transcriptome EP00159 Fonticula_alba ATCC 38817 Fonticula alba Rotosphaerida Rotosphaerida Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Rotosphaerida;Fonticula;Fonticula alba;strain ATCC-38817 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/388/065/GCF_000388065.1_Font_alba_ATCC_38817_V2/GCF_000388065.1_Font_alba_ATCC_38817_V2_protein.faa.gz Font_alba_ATCC_38817_V2 10.1093/molbev/mst241 none genome EP00160 Parvularia_atlantis ATCC 50694 Nuclearia_sp Parvularia atlantis Rotosphaerida Rotosphaerida Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Rotosphaerida;Parvularia;Parvularia atlantis;strain ATCC-50694 no https://figshare.com/articles/Nuclearia_sp_ATCC_50694_-_Transcriptome/3898485 a-Unigene Version 4 10.1016/j.cub.2015.07.053 none transcriptome EP00161 Ancyromonas_sigmoides CCAP 1958/3 Ancyromonas sigmoides Ancyromonadida Ancyromonadida Eukaryota;Ancyromonadida;Ancyromonadidae;Ancyromonas;Ancyromonas sigmoides;strain CCAP-1958/3 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5997436 Ancyromonas sigmoides CCAP 1958/3 transcriptome 10.1093/gbe/evy014 assemble mRNA,translate mRNA transcriptome EP00162 Nutomonas_longa CCAP 1958/5 Nutomonas longa Ancyromonadida Ancyromonadida Eukaryota;Ancyromonadida;Ancyromonadidae;Nutomonas;Nutomonas longa;strain CCAP-1958/5 no https://figshare.com/articles/Transcriptome_-_Nutomonas_longa/4560862 trinity_assembly Version 3 10.1016/j.cub.2015.07.053 none transcriptome EP00163 Fabomonas_tropica NYK3C Fabomonas tropica Ancyromonadida Ancyromonadida Eukaryota;Ancyromonadida;Fabomonas;Fabomonas tropica;strain NYK3C no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5997437 Fabomonas tropica NYK3C transcriptome 10.1093/gbe/evy014 assemble mRNA,translate mRNA transcriptome EP00164 Ancoracysta_twista TD-1 Ancoracysta twista Ancoracysta Ancoracysta Eukaryota;Diaphoretickes;Ancoracysta;Ancoracysta twista;strain TD-1 no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GF/YU/GFYU01/GFYU01.1.fsa_nt.gz GFYU01000000 10.1016/j.cub.2017.10.051 translate mRNA transcriptome EP00165 Cyanidioschyzon_merolae 10D Cyanidioschyzon merolae Rhodophyta Cyanidiales Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Cyanidiales;Cyanidioschyzon;Cyanidioschyzon merolae;strain 10D no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/091/205/GCF_000091205.1_ASM9120v1/GCF_000091205.1_ASM9120v1_protein.faa.gz ASM9120v1 10.1038/nature02398 none genome EP00166 Cyanidium_caldarium Tilden_Geitler Cyanidium caldarium Rhodophyta Cyanidiales Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Cyanidiales;Cyanidium;Cyanidium caldarium;strain Tilden_Geitler no http://cyanophora.rutgers.edu/redEST/redESTs.tar.gz Cyanidium.protein 10.1111/jpy.12294 none genome EP00167 Galdieria_sulphuraria 074W Galdieria sulphuraria Rhodophyta Cyanidiales Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Cyanidiales;Galdieria;Galdieria sulphuraria;strain 074W no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/341/285/GCF_000341285.1_ASM34128v1/GCF_000341285.1_ASM34128v1_protein.faa.gz ASM34128v1 10.1126/science.1231707 none genome EP00168 Porphyra_purpurea CCAP 1379/4 Porphyra purpurea Rhodophyta Bangiales Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Bangiales;Porphyra;Porphyra purpurea;strain CCAP-1379/4 no https://www.ncbi.nlm.nih.gov/sra/?term=txid2787[Organism:noexp] Porphyra purpurea EST project 10.1111/j.1529-8817.2012.01229.x assemble mRNA,translate mRNA transcriptome EP00169 Porphyra_umbilicalis Schoodic Point Porphyra umbilicalis Rhodophyta Bangiales Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Bangiales;Porphyra;Porphyra umbilicalis;strain Schoodic-Point no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/049/455/GCA_002049455.2_P_umbilicalis_v1/GCA_002049455.2_P_umbilicalis_v1_protein.faa.gz v1 10.1073/pnas.1703088114 none genome EP00170 Pyropia_yezoensis U-51 Pyropia yezoensis Rhodophyta Bangiales Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Bangiales;Pyropia;Pyropia yezoensis;strain U-51 no http://nrifs.fra.affrc.go.jp/cgi-bin/lime_download/lime.cgi?nori_FASTA_AminoAcid Ver. 1 10.1371/journal.pone.0057122 none genome EP00171 Calliarthron_tuberculosum VIBC Calliarthron tuberculosum Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Corallinophycidae;Corallinales;Corallinaceae;Calliarthron;Calliarthron tuberculosum;strain VIBC no http://realdb.algaegenome.org/P.c.t.html# Calliarthron_tuberculosum_aa 10.1016/j.cub.2011.01.037 none genome EP00172 Hildenbrandia_rubra UTEX 2621 Hildenbrandia rubra Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Hildenbrandiophycidae;Hildenbrandia;Hildenbrandia rubra;strain UTEX-2621 no http://cyanophora.rutgers.edu/redEST/redESTs.tar.gz est 10.1111/jpy.12294 translate mRNA transcriptome EP00173 Palmaria_palmata N/A Palmaria palmata Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Nemaliophycidae;Palmariales;Palmariaceae;Palmaria;Palmaria palmata;strain Reid State Park, Georgetown, ME, USA no http://cyanophora.rutgers.edu/redEST/redESTs.tar.gz est 10.1111/jpy.12294 translate mRNA transcriptome EP00174 Griffithsia_okiensis N/A Griffithsia okiensis Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Rhodymeniophycidae;Ceramiales;Ceramiaceae;Griffithsia;Griffithsia okiensis;strain Dolsan Island, April 3, 1992 no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=167350 LIBEST_024364 PMID: 18176538 trimseq,translate mRNA,CD-HIT EST EP00175 Furcellaria_lumbricalis Northern Ireland,Atlantic Ocean,Baltic Sea Furcellaria lumbricalis Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Rhodymeniophycidae;Gigartinales;Furcellariaceae;Furcellaria;Furcellaria lumbricalis yes https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=169272,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=169271 LIBEST_026199,LIBEST_026198 10.1016/j.jembe.2011.05.006 trimseq,translate mRNA (min length 50),CD-HIT EST EP00176 Chondrus_crispus N/A Chondrus crispus Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Rhodymeniophycidae;Gigartinales;Gigartinaceae;Chondrus;Chondrus crispus;strain Peggy’s Cove, Nova Scotia, Canada, 1985, Juan Correa no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/350/225/GCF_000350225.1_ASM35022v2/GCF_000350225.1_ASM35022v2_protein.faa.gz ASM35022v2 10.1073/pnas.1221259110 none genome EP00177 Eucheuma_denticulatum sd Eucheuma denticulatum Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Rhodymeniophycidae;Gigartinales;Solieriaceae;Eucheuma;Eucheuma denticulatum;strain sd no https://www.ncbi.nlm.nih.gov/sites/nuccore?term=379657[BioProject] GFKZ01000000 N/A translate mRNA transcriptome EP00178 Gracilaria_changii N/A Gracilaria changii Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Rhodymeniophycidae;Gracilariales;Gracilariaceae;Gracilaria;Gracilaria changii;strain Morib, Selangor, Malaysia, October 2012 no https://www.ncbi.nlm.nih.gov/sra?LinkName=biosample_sra&from_uid=7306656,https://www.ncbi.nlm.nih.gov/sra?LinkName=biosample_sra&from_uid=7306657 GC_UT_1,GC_UT_2 10.1038/srep46563 assemble mRNA,translate mRNA transcriptome EP00179 Madagascaria_erythrocladioides CCMP3234 Madagascaria_erythrocladoides Madagascaria erythrocladioides Rhodophyta Compsopogonophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Compsopogonophyceae;"EMR clade";Madagascaria;Madagascaria erythrocladioides;strain CCMP-3234 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1450 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00180 Rhodochaete_pulchella CCMP3232 Rhodochaete pulchella Rhodophyta Compsopogonophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Compsopogonophyceae;"EMR clade";Rhodochaete;Rhodochaete pulchella;strain CCMP-3232 no http://cyanophora.rutgers.edu/redEST/redESTs.tar.gz est 10.1111/jpy.12294 translate mRNA transcriptome EP00181 Compsopogon_caeruleus SAG 36.94 Compsopogon_coeruleus Compsopogon caeruleus Rhodophyta Compsopogonophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Compsopogonophyceae;Compsopogonales;Compsopogon;Compsopogon caeruleus;strain SAG-36.94 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0312 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00182 Erythrolobus_australicus CCMP3124 Erythrolobus australicus Rhodophyta Porphyridiophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Porphyridiophyceae;Erythrolobus;Erythrolobus australicus;strain CCMP-3124 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1353 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00183 Erythrolobus_madagascarensis CCMP3276 Erythrolobus madagascarensis Rhodophyta Porphyridiophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Porphyridiophyceae;Erythrolobus;Erythrolobus madagascarensis;strain CCMP-3276 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1354 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00184 Porphyridium_aerugineum SAG 1380-2 Porphyridium aerugineum Rhodophyta Porphyridiophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Porphyridiophyceae;Porphyridium;Porphyridium aerugineum;strain SAG-1380.2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0313 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00185 Porphyridium_purpureum CCMP1328 Porphyridium purpureum Rhodophyta Porphyridiophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Porphyridiophyceae;Porphyridium;Porphyridium purpureum;strain CCMP-1328 no http://porphyra.rutgers.edu/Porphyridium_purpureum_v2_genome_data.zip v.2 10.1038/ncomms2931 none genome EP00186 Timspurckia_oligopyrenoides CCMP3278 Timspurckia oligopyrenoides Rhodophyta Porphyridiophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Porphyridiophyceae;Timspurckia;Timspurckia oligopyrenoides;strain CCMP-3278 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1172 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00187 Rhodella_violacea CCMP736 Rhodella_maculata Rhodella violacea Rhodophyta Rhodellophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Rhodellophyceae;Rhodellales;Rhodella;Rhodella violacea;strain CCMP-736 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0167,MMETSP0314 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00188 Purpureofilum_apyrenoidigerum CCMP3233 Purpureofilum apyrenoidigerum Rhodophyta Stylonematophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Stylonematophyceae;Purpureofilum;Purpureofilum apyrenoidigerum;strain CCMP-3233 no http://cyanophora.rutgers.edu/redEST/redESTs.tar.gz est 10.1111/jpy.12294 translate mRNA transcriptome EP00189 Rhodosorus_marinus CCMP769,UTEX LB 2760 Rhodosorus marinus Rhodophyta Stylonematophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Stylonematophyceae;Rhodosorus;Rhodosorus marinus yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0011,MMETSP0315 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00190 Stylonematophyceae_sp_CCMP1999 CCMP1999 N/A N/A Rhodophyta Stylonematophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Proteorhodophytina;Stylonematophyceae;strain CCMP-1999 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1475 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00191 Tetraselmis_sp_GSL018 GSL018 Tetraselmis N/A Chloroplastida Chlorodendrophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorodendrophyceae;Tetraselmis;strain GSL018 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0419 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00192 Tetraselmis_astigmatica CCMP880 Tetraselmis astigmatica Chloroplastida Chlorodendrophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorodendrophyceae;Tetraselmis;Tetraselmis astigmatica;strain CCMP-880 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0804 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00193 Tetraselmis_chuii PLY429 Tetraselmis chuii Chloroplastida Chlorodendrophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorodendrophyceae;Tetraselmis;Tetraselmis chuii;strain PLY429 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0491 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00194 Tetraselmis_striata LANL1001 Tetraselmis striata Chloroplastida Chlorodendrophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorodendrophyceae;Tetraselmis;Tetraselmis striata;strain LANL1001 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0817,MMETSP0818,MMETSP0819,MMETSP0820 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00195 Chlamydomonas_chlamydogama SAG 11-48b Chlamydomonas chlamydogama Chloroplastida Chlorophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorophyceae;"CS lineage";Chlamydomonadales;Chlamydomonas;Chlamydomonas chlamydogama;strain SAG-11.48b no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1392 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00196 Chlamydomonas_euryale CCMP219 Chlamydomonas euryale Chloroplastida Chlorophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorophyceae;"CS lineage";Chlamydomonadales;Chlamydomonas;Chlamydomonas euryale;strain CCMP-219 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0063 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00197 Chlamydomonas_leiostraca SAG 11-49 Chlamydomonas leiostraca Chloroplastida Chlorophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorophyceae;"CS lineage";Chlamydomonadales;Chlamydomonas;Chlamydomonas leiostraca;strain SAG-11.49 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1391 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00198 Chlamydomonas_reinhardtii CC-503 cw92 mt+ Chlamydomonas reinhardtii Chloroplastida Chlorophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorophyceae;"CS lineage";Chlamydomonadales;Chlamydomonas;Chlamydomonas reinhardtii;strain CC-503-cw92-mt+ no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/595/GCF_000002595.1_v3.0/GCF_000002595.1_v3.0_protein.faa.gz v3.0 10.1126/science.1143609 none genome EP00199 Chlamydomonas_sp_CCMP681 CCMP681 Chlamydomonas sp Chloroplastida Chlorophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorophyceae;"CS lineage";Chlamydomonadales;Chlamydomonas;strain CCMP-681 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1180 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00200 Dunaliella_tertiolecta CCMP1320 Dunaliella tertiolecta Chloroplastida Chlorophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorophyceae;"CS lineage";Chlamydomonadales;Dunaliella;Dunaliella tertiolecta;strain CCMP-1320 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1126,MMETSP1127,MMETSP1128 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00201 Polytomella_parva SAG 63-3 Polytomella parva Chloroplastida Chlorophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorophyceae;"CS lineage";Chlamydomonadales;Polytomella;Polytomella parva;strain SAG-63.3 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0052 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00202 Volvox_carteri f. nagariensis M.O.P.Iyengar Volvox carteri Chloroplastida Chlorophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Chlorophyceae;"CS lineage";Chlamydomonadales;Volvox;Volvox carteri;strain nagariensis-M.O.P.Iyengar no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/455/GCF_000143455.1_v1.0/GCF_000143455.1_v1.0_protein.faa.gz v1.0 10.1126/science.1188800 none genome EP00203 Chlorella_variabilis NC64A Chlorella variabilis Chloroplastida Trebouxiophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Trebouxiophyceae;Chlorellales;Chlorella;Chlorella variabilis;strain NC64A no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/147/415/GCF_000147415.1_v_1.0/GCF_000147415.1_v_1.0_protein.faa.gz v1.0 10.1105/tpc.110.076406 none genome EP00204 Picochlorum_oklahomense CCMP2329 Picochlorum_oklahomensis Picochlorum oklahomense Chloroplastida Trebouxiophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Trebouxiophyceae;Chlorellales;Picochlorum;Picochlorum oklahomense;strain CCMP-2329 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1161 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00205 Picochlorum_sp_RCC944 RCC944 Picochlorum N/A Chloroplastida Trebouxiophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Trebouxiophyceae;Chlorellales;Picochlorum;strain RCC-944 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1330 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00206 Coccomyxa_subellipsoidea C-169 Coccomyxa subellipsoidea Chloroplastida Trebouxiophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Trebouxiophyceae;Coccomyxa;Coccomyxa subellipsoidea;strain C-169 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/258/705/GCF_000258705.1_Coccomyxa_subellipsoidae_v2.0/GCF_000258705.1_Coccomyxa_subellipsoidae_v2.0_protein.faa.gz v2.0 10.1186/gb-2012-13-5-r39 none genome EP00207 Helicosporidium_sp_ATCC50920 ATCC 50920 Helicosporidium N/A Chloroplastida Trebouxiophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Trebouxiophyceae;Helicosporidium;strain ATCC-50920 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/690/575/GCA_000690575.1_Helico_v1.0/GCA_000690575.1_Helico_v1.0_protein.faa.gz Helico_v1.0 10.1371/journal.pgen.1004355 none genome EP00208 Stichococcus_sp_RCC1054 RCC1054 Stichococcus N/A Chloroplastida Trebouxiophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Trebouxiophyceae;Prasiolales;Stichococcus;strain RCC-1054 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1473 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00209 Acetabularia_acetabulum N/A Acetabularia acetabulum Chloroplastida Ulvophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Ulvophyceae;"DST clade";Dasycladales;Acetabularia;Acetabularia acetabulum no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150384 LIBEST_019770 10.1093/nar/gkl770 trimseq,translate mRNA (genetic code 6),CD-HIT EST EP00210 Caulerpa_lentillifera Okinawa Caulerpa lentillifera Chloroplastida Ulvophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;"core chlorophytes";Ulvophyceae;Bryopsidales;Caulerpa;Caulerpa lentillifera;strain Okinawa no http://marinegenomics.oist.jp/umibudo/download/clen_genemodels-v1.1.faa.gz v1.1 10.1093/dnares/dsz002 none genome EP00211 Chloroparvula_japonica RCC2339 Chloroparvula japonica Chloroplastida Chloropicophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Chloropicophyceae;Chloroparvula;Chloroparvula japonica;strain RCC-2339 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1310 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00212 Chloropicon_laureae RCC701,RCC856 Chloropicon laureae Chloroplastida Chloropicophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Chloropicophyceae;Chloropicon;Chloropicon laureae yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP1453,MMETSP1311 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00213 Chloropicon_mariensis RCC998 Chloropicon mariensis Chloroplastida Chloropicophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Chloropicophyceae;Chloropicon;Chloropicon mariensis;strain RCC-998 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1309 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00215 Chloropicon_roscoffensis CCMP1998,RCC2335,RCC1871 Pycnococcus_sp Chloropicon roscoffensis Chloroplastida Chloropicophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Chloropicophyceae;Chloropicon;Chloropicon roscoffensis yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP1085,MMETSP1312,MMETSP1456 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00216 Chloropicon_sp_CCMP2111 CCMP2111 Chloropicon N/A Chloroplastida Chloropicophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Chloropicophyceae;Chloropicon;strain CCMP-2111 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1446 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00217 Crustomastix_stigmatica CCMP3273 Crustomastix_stigmata Crustomastix stigmatica Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Crustomastigaceae;Crustomastix;Crustomastix stigmatica;strain CCMP-3273 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0803 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00218 Dolichomastix_tenuilepis CCMP3274 Dolichomastix tenuilepis Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Dolichomastigaceae;Dolichomastix;Dolichomastix tenuilepis;strain CCMP-3274 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0033 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00222 Ostreococcus_lucimarinus CCE9901 Ostreococcus lucimarinus Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Bathycoccaceae;Ostreococcus;Ostreococcus lucimarinus;strain CCE9901 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/092/065/GCF_000092065.1_ASM9206v1/GCF_000092065.1_ASM9206v1_protein.faa.gz ASM9206v1 10.1073/pnas.0611046104 none genome EP00223 Ostreococcus_mediterraneus RCC2572,RCC1621,RCC2596,RCC2573,RCC2593,RCC1107 Ostreococcus mediterraneus Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Bathycoccaceae;Ostreococcus;Ostreococcus mediterraneus yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0929,MMETSP0930,MMETSP0932,MMETSP0936,MMETSP0937,MMETSP0938 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00224 Ostreococcus_tauri OTH95 Ostreococcus tauri Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Bathycoccaceae;Ostreococcus;Ostreococcus tauri;strain OTH95 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/214/015/GCF_000214015.3_version_140606/GCF_000214015.3_version_140606_protein.faa.gz 140606 10.1073/pnas.0604795103,10.1186/1471-2164-15-1103 none genome EP00227 Mantoniella_beaufortii RCC2288 Mantoniella beaufortii Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Mamiellaceae;Mantoniella;Mantoniella beaufortii;strain RCC-2288 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1326 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00228 Micromonas_bravo CCAC 1681 Micromonas_pusilla Micromonas bravo Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Mamiellaceae;Micromonas;Micromonas bravo;strain CCAC-1681 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1401 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00229 Micromonas_commoda RCC299 Micromonas commoda Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Mamiellaceae;Micromonas;Micromonas commoda;strain RCC-299 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/090/985/GCF_000090985.2_ASM9098v2/GCF_000090985.2_ASM9098v2_protein.faa.gz ASM9098v2 10.1126/science.1167222 none genome EP00230 Micromonas_polaris CCMP2099,RCC2306 Micromonas_pusilla Micromonas polaris Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Mamiellaceae;Micromonas;Micromonas polaris yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0802,MMETSP1327,MMETSP1390 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00231 Micromonas_pusilla CCMP1545 Micromonas pusilla Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Mamiellaceae;Micromonas;Micromonas pusilla;strain CCMP-1545 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/265/GCF_000151265.2_Micromonas_pusilla_CCMP1545_v2.0/GCF_000151265.2_Micromonas_pusilla_CCMP1545_v2.0_protein.faa.gz v2.0 10.1126/science.1167222 none genome EP00232 Nephroselmis_pyriformis CCMP717 Nephroselmis pyriformis Chloroplastida Nephroselmidophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Nephroselmidophyceae;Nephroselmis;Nephroselmis pyriformis;strain CCMP-717 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0034 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00233 Prasinococcus_capsulatus CCMP1194 Prasinococcus capsulatus Chloroplastida Palmophyllophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Palmophyllophyceae;Prasinococcus;Prasinococcus capsulatus;strain CCMP-1194 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0941 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00234 Prasinoderma_coloniale CCMP1413 Prasinoderma coloniale Chloroplastida Palmophyllophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Palmophyllophyceae;"Prasinoderma clade";Prasinoderma;Prasinoderma coloniale;strain CCMP-1413 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0806 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00235 Prasinoderma_singulare RCC927 Prasinoderma_singularis Prasinoderma singulare Chloroplastida Palmophyllophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Palmophyllophyceae;"Prasinoderma clade";Prasinoderma;Prasinoderma singulare;strain RCC-927 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1315 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00236 Picocystis_salinarum CCMP1897 Picocystis salinarum Chloroplastida other_prasinophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Picocystophyceae;Picocystis;Picocystis salinarum;strain CCMP-1897 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0807,MMETSP1159 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00237 Pycnococcus_provasolii RCC2336,RCC931,RCC733,RCC251 Pycnococcus provasolii Chloroplastida other_prasinophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Pycnococcaceae;Pycnococcus;Pycnococcus provasolii yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP1316,MMETSP1459,MMETSP1471,MMETSP1472 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00238 Polyblepharides_amylifera CCMP720 Pyramimonas_amylifera Polyblepharides amylifera Chloroplastida Pyramimonadales Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Pyramimonadales;Polyblepharides;Polyblepharides amylifera;strain CCMP-720 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1081 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00239 Pterosperma_sp_CCMP1384 CCMP1384 Pterosperma N/A Chloroplastida Pyramimonadales Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Pyramimonadales;Pterosperma;strain CCMP-1384 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1438 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00240 Pyramimonas_obovata CCMP722 Pyramimonas obovata Chloroplastida Pyramimonadales Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Pyramimonadales;Pyramimonas;Pyramimonas obovata;strain CCMP-722 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1169 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00241 Pyramimonas_parkeae CCMP726 Pyramimonas parkeae Chloroplastida Pyramimonadales Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Pyramimonadales;Pyramimonas;Pyramimonas parkeae;strain CCMP-726 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0058,MMETSP0059 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00242 Pyramimonas_sp_CCMP2087 CCMP2087 Pyramimonas N/A Chloroplastida Pyramimonadales Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Pyramimonadales;Pyramimonas;strain CCMP-2087 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1445 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00243 Klebsormidium_subtile CCAC 0119 Klebsormidium subtile Chloroplastida Klebsormidiophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Klebsormidiophyceae;Klebsormidiaceae;Klebsormidium;Klebsormidium subtile;strain CCAC-0119 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364370 Population Genomics of Klebsormidium subtile 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00244 Chara_vulgaris CCAC 3183 B Chara vulgaris Chloroplastida Charophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Charophyceae;Chara;Chara vulgaris;strain CCAC-3183B no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364366 Population Genomics of Chara vulgaris 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00245 Coleochaete_scutata SAG 110.80M Coleochaete scutata Chloroplastida Coleochaetophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Coleochaetophyceae;Coleochaete;Coleochaete scutata;strain SAG-110.80M no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364368 Population Genomics of Coleochaete scutata 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00246 Nothoceros_aenigmaticus J. C. VIllarreal 1026B (CONN) Nothoceros aenigmaticus Chloroplastida basal_embryophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Anthocerotophyta;Anthocerotopsida;Dendrocerotidae;Dendrocerotaceae;Dendrocerotoideae;Nothoceros;Nothoceros aenigmaticus;strain JCVIllarreal-1026B-(CONN) no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364356 Population Genomics of Nothoceros aenigmaticus 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00247 Physcomitrella_patens Gransden 2004 Physcomitrella patens Chloroplastida basal_embryophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Bryophyta;Bryophytina;Bryopsida;Funariidae;Funariales;Funariaceae;Physcomitrella;Physcomitrella patens;strain Gransden-2004 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/425/GCF_000002425.4_Phypa_V3/GCF_000002425.4_Phypa_V3_protein.faa.gz Phypa V3 10.1126/science.1150646 none genome EP00248 Marchantia_polymorpha subsp. ruderalis Tak-1/Tak-2/Tak-1 BC4/Kit-2 Marchantia polymorpha Chloroplastida basal_embryophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Marchantiophyta;Marchantiopsida;Marchantiidae;Marchantiales;Marchantiaceae;Marchantia;Marchantia polymorpha;strain ruderalis-Tak-1/Tak-2/Tak-1-BC4/Kit-2 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/032/435/GCA_003032435.1_Marchanta_polymorpha_v1/GCA_003032435.1_Marchanta_polymorpha_v1_protein.faa.gz v1 10.1016/j.cell.2017.09.030 none genome EP00249 Psilotum_nudum N/A Psilotum nudum Chloroplastida basal_embryophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Polypodiopsida;Ophioglossidae;Psilotaceae;Psilotum;Psilotum nudum no ftp://parrot.genomics.cn/gigadb/pub/10.5524/100001_101000/100353/69_species_pep.fa.tar.gz RS-21 10.1093/gigascience/gix116 none transcriptome EP00250 Pteridium_aquilinum N/A Pteridium aquilinum Chloroplastida basal_embryophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Polypodiopsida;Polypodiidae;Polypodiales;Dennstaedtiaceae;Pteridium;Pteridium aquilinum no ftp://parrot.genomics.cn/gigadb/pub/10.5524/100001_101000/100353/69_species_pep.fa.tar.gz RS-41 10.1093/gigascience/gix116 none transcriptome EP00251 Ginkgo_biloba N/A Ginkgo biloba Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Acrogymnospermae;Ginkgo;Ginkgo biloba no ftp://parrot.genomics.cn/gigadb/pub/10.5524/100001_101000/100209/Gb.pep.fa TM011 10.1186/s13742-016-0154-1 none genome EP00252 Welwitschia_mirabilis Leebens-Mack2013-13 Welwitschia mirabilis Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Acrogymnospermae;Gnetidae;Welwitschia;Welwitschia mirabilis;strain Leebens-Mack2013-13 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364404 Population Genomics of Welwitschia mirabilis 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00253 Pinus_taeda 20-1010 Pinus taeda Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Acrogymnospermae;Pinidae;Pinaceae;Pinus;Pinus taeda;strain 20-1010 no https://treegenesdb.org/FTP/Genomes/Pita/v2.01/annotation/Pita.2_01.peptides.fa.gz v2.01 10.1093/gigascience/giw016 none genome EP00254 Amborella_trichopoda SantaCruz Amborella trichopoda Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Amborellales;Amborellaceae;Amborella;Amborella trichopoda;strain SantaCruz no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/471/905/GCF_000471905.2_AMTR1.0/GCF_000471905.2_AMTR1.0_protein.faa.gz AMTR1.0 10.1126/science.1241089 none genome EP00255 Erythranthe_guttata IM62 Erythranthe guttata Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;"eudicotyledons";Pentapetalae;"asterids";"lamiids";Lamiales;Phrymaceae;Erythranthe;Erythranthe guttata;strain IM62 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/504/015/GCF_000504015.1_Mimgu1_0/GCF_000504015.1_Mimgu1_0_protein.faa.gz Mimgu1_0 10.1073/pnas.1319032110 none genome EP00256 Glycine_max Williams 82 Glycine max Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;"eudicotyledons";Pentapetalae;"rosids";"fabids";Fabales;Fabaceae;Glycine;Glycine max;strain Williams-82 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/515/GCF_000004515.5_Glycine_max_v2.1/GCF_000004515.5_Glycine_max_v2.1_protein.faa.gz Glycine_max_v2.1 10.1038/nature08670 none genome EP00257 Ricinus_communis Hale (NSL 4773) Ricinus communis Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;"eudicotyledons";Pentapetalae;"rosids";"fabids";Malpighiales;Euphorbiaceae;Ricinus;Ricinus communis;strain Hale-(NSL-4773) no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/685/GCF_000151685.1_JCVI_RCG_1.1/GCF_000151685.1_JCVI_RCG_1.1_protein.faa.gz JCVI_RCG_1.1 10.1038/nbt.1674 none genome EP00258 Populus_trichocarpa Nisqually 1 Populus trichocarpa Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;"eudicotyledons";Pentapetalae;"rosids";"fabids";Malpighiales;Salicaceae;Populus;Populus trichocarpa;strain Nisqually-1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/775/GCF_000002775.4_Pop_tri_v3/GCF_000002775.4_Pop_tri_v3_protein.faa.gz Pop_tri_v3 10.1126/science.1128691 none genome EP00259 Arabidopsis_lyrata MN47 Arabidopsis lyrata Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;"eudicotyledons";Pentapetalae;"rosids";"malvids";Brassicales;Brassicaceae;Arabidopsis;Arabidopsis lyrata;strain MN47 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/255/GCF_000004255.2_v.1.0/GCF_000004255.2_v.1.0_protein.faa.gz v1.0 10.1038/ng.807 none genome EP00260 Arabidopsis_thaliana Columbia Arabidopsis thaliana Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;"eudicotyledons";Pentapetalae;"rosids";"malvids";Brassicales;Brassicaceae;Arabidopsis;Arabidopsis thaliana;strain Columbia no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/735/GCF_000001735.4_TAIR10.1/GCF_000001735.4_TAIR10.1_protein.faa.gz TAIR10.1 10.1038/35048692 none genome EP00261 Vitis_vinifera PN40024 Vitis vinifera Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;"eudicotyledons";Pentapetalae;"rosids";Vitales;Vitaceae;Vitis;Vitis vinifera;strain PN40024 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/745/GCF_000003745.3_12X/GCF_000003745.3_12X_protein.faa.gz 12X 10.1038/nature06148 none genome EP00262 Sarcandra_glabra T. Chen et. al. 081210-04 Sarcandra glabra Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;Chloranthales;Chloranthaceae;Sarcandra;Sarcandra glabra;strain Chen-081210-04 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364333 Population Genomics of Sarcandra glabra 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00263 Brachypodium_distachyon Bd21 Brachypodium distachyon Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;Liliopsida;Petrosaviidae;"commelinids";Poales;Brachypodium;Brachypodium distachyon;strain Bd21 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/505/GCF_000005505.3_Brachypodium_distachyon_v3.0/GCF_000005505.3_Brachypodium_distachyon_v3.0_protein.faa.gz Brachypodium_distachyon_v3.0 10.1038/nature08747 none genome EP00264 Hordeum_vulgare Morex Hordeum vulgare Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;Liliopsida;Petrosaviidae;"commelinids";Poales;Poaceae;Hordeum;Hordeum vulgare;strain Morex no ftp://ftp.ensemblgenomes.org/pub/plants/release-42/fasta/hordeum_vulgare/pep/Hordeum_vulgare.IBSC_v2.pep.all.fa.gz IBSC_v2 10.1038/nature11543 none genome EP00265 Oryza_sativa ssp. japonica cv. Nipponbare Oryza sativa Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;Liliopsida;Petrosaviidae;"commelinids";Poales;Poaceae;Oryza;Oryza sativa;strain japonica-Nipponbare no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/425/GCF_000005425.2_Build_4.0/GCF_000005425.2_Build_4.0_protein.faa.gz Build 4.0 10.1038/nature03895 none genome EP00266 Sorghum_bicolor BTx623 Sorghum bicolor Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;Liliopsida;Petrosaviidae;"commelinids";Poales;Poaceae;Sorghum;Sorghum bicolor;strain BTx623 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/195/GCF_000003195.3_Sorghum_bicolor_NCBIv3/GCF_000003195.3_Sorghum_bicolor_NCBIv3_protein.faa.gz Sorghum_bicolor_NCBIv3 10.1038/nature07723 none genome EP00267 Zea_mays B73 Zea mays Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;Liliopsida;Petrosaviidae;"commelinids";Poales;Poaceae;Zea;Zea mays;strain B73 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/005/005/GCF_000005005.2_B73_RefGen_v4/GCF_000005005.2_B73_RefGen_v4_protein.faa.gz B73 RefGen_v4 10.1126/science.1178534 none genome EP00268 Persea_americana mill Persea americana Chloroplastida Spermatophyta Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Euphyllophyta;Spermatophyta;Magnoliopsida;Mesangiospermae;Magnoliidae;Laurales;Lauraceae;Persea;Persea americana;strain mill no https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=483022 Persea americana cultivar:mill Raw sequence reads 10.1186/s12864-019-5486-7 assemble mRNA,translate mRNA transcriptome EP00269 Selaginella_moellendorffii Plant Delights Selaginella moellendorffii Chloroplastida basal_embryophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Embryophyta;Tracheophyta;Lycopodiopsida;Selaginella;Selaginella moellendorffii;strain Plant-Delights no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/143/415/GCF_000143415.4_v1.0/GCF_000143415.4_v1.0_protein.faa.gz v1.0 10.1126/science.1203810 none genome EP00270 Netrium_digitus CCAC 0148 Netrium digitus Chloroplastida Zygnematophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Zygnematophyceae;Zygnematophycidae;Netrium;Netrium digitus;strain CCAC-0148 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364379 Population Genomics of Netrium digitus 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00271 Cylindrocystis_brebissonii CCAC 0211 Cylindrocystis brebissonii Chloroplastida Zygnematophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;"core streptophytes";Phragmoplastophyta;Zygnematophyceae;Zygnematophycidae;Zygnemataceae;"CMZ clade";Cylindrocystis;Cylindrocystis brebissonii;strain CCAC-0211 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364378 Population Genomics of Cylindrocystis brebissonii 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00272 Mesostigma_viride SAG 50-1 Mesostigma viride Chloroplastida basal_streptophytes Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Streptophyta;Mesostigma;Mesostigma viride;strain SAG-50.1 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR364365 Population Genomics of Mesostigma viride 10.1073/pnas.1323926111 assemble mRNA,translate mRNA transcriptome EP00274 Cyanoptyche_gloeocystis SAG4.97 Cyanoptyche gloeocystis Glaucophyta Glaucophyta Eukaryota;Diaphoretickes;Archaeplastida;Glaucophyta;Cyanoptyche;Cyanoptyche gloeocystis;strain SAG-4.97 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1086 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00275 Glaucocystis_nostochinearum SAMN00150396,SAMN00150397,SAMN00150398,SAMN00150399,SAMN00150400 Glaucocystis nostochinearum Glaucophyta Glaucophyta Eukaryota;Diaphoretickes;Archaeplastida;Glaucophyta;Glaucocystis;Glaucocystis nostochinearum yes https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150399 LIBEST_019786,LIBEST_019785,LIBEST_019784,LIBEST_019783,LIBEST_019782 10.1093/nar/gkl770 trimseq,translate mRNA,CD-HIT EST EP00276 Gloeochaete_wittrockiana SAG 46.84 Gloeochaete_witrockiana Gloeochaete wittrockiana Glaucophyta Glaucophyta Eukaryota;Diaphoretickes;Archaeplastida;Glaucophyta;Gloeochaete;Gloeochaete wittrockiana;strain SAG-46.84 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0308,MMETSP1089 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00277 Geminigera_cryophila CCMP2564,CaronLabIsolate Geminigera cryophila Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage B";Geminigera;Geminigera cryophila yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0799,MMETSP1102 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00279 Guillardia_theta CCMP2712 Guillardia theta Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage C";Guillardia;Guillardia theta;strain CCMP-2712 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/315/625/GCF_000315625.1_Guith1/GCF_000315625.1_Guith1_protein.faa.gz Guith1 10.1038/nature11681 none genome EP00280 Hanusia_phi CCMP325 Hanusia phi Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage C";Hanusia;Hanusia phi;strain CCMP-325 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1048 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00281 Chroomonas_sp_CCMP1168 CCMP1168 Chroomonas_mesostigmatica "Chroomonas" N/A Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage D";"Cafricana clade";strain CCMP-1168 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0047 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00282 Hemiselmis_andersenii CCMP644,CCMP439,CCMP1180,CCMP441 Hemiselmis andersenii Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage D";Hemiselmis;Hemiselmis andersenii yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0043,MMETSP1041,MMETSP1042,MMETSP1043 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00283 Hemiselmis_rufescens PCC563 Hemiselmis rufescens Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage D";Hemiselmis;Hemiselmis rufescens;strain PCC-563 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1357 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00284 Hemiselmis_tepida CCMP443 Hemiselmis tepida Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage D";Hemiselmis;Hemiselmis tepida;strain CCMP-443 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1355 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00285 Hemiselmis_virescens PCC157 Hemiselmis_viresens Hemiselmis virescens Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage D";Hemiselmis;Hemiselmis virescens;strain PCC-157 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1356 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00286 Rhodomonas_abbreviata Caron Lab Isolate "Rhodomonas" abbreviata Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage E";"Rabbreviata clade";Rhodomonas abbreviata;strain Caron-Lab-Isolate no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1101 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00287 Rhodomonas_sp_CCMP768 CCMP768 "Rhodomonas" N/A Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage E";"Rirregularis clade";strain CCMP-768 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1091,MMETSP1389 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00288 Rhodomonas_lens RHODO "Rhodomonas" lens Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage E";"Rpauca clade";Rhodomonas lens;strain RHODO no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0484 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00289 Rhodomonas_salina CCMP1319 "Rhodomonas" salina Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;"lineage E";Rhodomonas salina;strain CCMP-1319 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1047 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00290 Baffinella_sp_CCMP2293 CCMP2293 Cryptophyceae_sp Baffinella N/A Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;Baffinella;strain CCMP-2293 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0986,MMETSP0987,MMETSP0988,MMETSP0989 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00291 Cryptomonas_curvata CCAP 979/52 Cryptomonas curvata Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;Cryptomonas;Cryptomonas curvata;strain CCAP-979/52 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1050 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00292 Cryptomonas_paramecium CCAP 977/2a Cryptomonas paramecium Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;Cryptomonas;Cryptomonas paramecium;strain CCAP-977/2a no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0038 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00293 Proteomonas_sulcata CCMP704 Proteomonas sulcata Cryptophyceae Cryptomonadales Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Cryptomonadales;Proteomonas;Proteomonas sulcata;strain CCMP-704 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1049 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00294 Goniomonas_avonlea m Goniomonas avonlea Cryptophyceae basal_cryptophytes Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Goniomonas;"ma G clade";Goniomonas avonlea;strain m no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0114 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00295 Goniomonas_pacifica CCMP1869 Goniomonas pacifica Cryptophyceae basal_cryptophytes Eukaryota;Diaphoretickes;Cryptista;Cryptophyceae;Goniomonas;"ma G clade";Goniomonas pacifica;strain CCMP-1869 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0107,MMETSP0108 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00296 Roombia_truncata N/A Roombia truncata Kathablepharidacea Kathablepharidacea Eukaryota;Diaphoretickes;Cryptista;Kathablepharidacea;Roombia;Roombia truncata no https://www.ncbi.nlm.nih.gov/sites/nuccore?term=73793[BioProject] PRJNA73793 10.1098/rspb.2011.2301 translate mRNA (min length 50) transcriptome EP00297 Palpitomonas_bilix NIES-2562 Palpitomonas bilix Palpitomonas Palpitomonas Eukaryota;Diaphoretickes;Cryptista;Palpitomonas;Palpitomonas bilix;strain NIES-2562 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0780 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00298 Acanthocystis_sp_HF-20 clone HF-20 Acanthocystis N/A Centroplasthelida Centroplasthelida Eukaryota;Diaphoretickes;Haptista;Centroplasthelida;Panacanthocystida;Acanthocystidae;Acanthocystis;strain HF-20 no https://datadryad.org/bitstream/handle/10255/dryad.103233/Acanthocystis_sp_transcriptome.fasta.zip Transcriptome assembly of Acanthocystis sp 10.1098/rspb.2015.2802 translate mRNA transcriptome EP00299 Pterocystis_canadensis clone 00344 Raineriophrys_erinaceoides Pterocystis canadensis Centroplasthelida Centroplasthelida Eukaryota;Diaphoretickes;Haptista;Centroplasthelida;Pterocystida;Pterista;"Pterocystidae C";Pterocystis canadensis no https://datadryad.org/bitstream/handle/10255/dryad.103231/Raineriophrys_erinaceoides_transcriptome.fasta.zip Transcriptome assembly of Raineriophrys erinaceoides 10.1098/rspb.2015.2802 translate mRNA transcriptome EP00300 Choanocystis_sp_HF-7 clone HF-7 Choanocystis N/A Centroplasthelida Centroplasthelida Eukaryota;Diaphoretickes;Haptista;Centroplasthelida;Pterocystida;Raphidista;Choanocystidae;Choanocystis;strain HF-7 no https://datadryad.org/bitstream/handle/10255/dryad.103232/Choanocystis_sp_transcriptome.fasta.zip Transcriptome assembly of Choanocystis sp 10.1098/rspb.2015.2802 translate mRNA transcriptome EP00301 Raphidiophrys_heterophryoidea clone 00434 Raphidiophrys heterophryoidea Centroplasthelida Centroplasthelida Eukaryota;Diaphoretickes;Haptista;Centroplasthelida;Pterocystida;Raphidista;Raphidiophryidae;Raphidiophrys;Raphidiophrys heterophryoidea;strain 00434 no https://datadryad.org/bitstream/handle/10255/dryad.103234/Raphidiophrys_heterophryoidea_transcriptome.fasta.zip Transcriptome assembly of Raphidiophrys heterophryoidea 10.1098/rspb.2015.2802 translate mRNA transcriptome EP00302 Diacronema_sp_CCMP2436 CCMP2436 Diacronema N/A Haptophyta basal_haptophytes Eukaryota;Diaphoretickes;Haptista;Haptophyta;Pavlovales;Diacronema;strain CCMP-2436 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0982,MMETSP0983,MMETSP0984,MMETSP0985 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00303 Exanthemachrysis_gayraliae RCC1523 Exanthemachrysis gayraliae Haptophyta basal_haptophytes Eukaryota;Diaphoretickes;Haptista;Haptophyta;Pavlovales;Exanthemachrysis;Exanthemachrysis gayraliae;strain RCC-1523 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1464 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00304 Pavlova_gyrans CCMP608 Pavlova gyrans Haptophyta basal_haptophytes Eukaryota;Diaphoretickes;Haptista;Haptophyta;Pavlovales;Pavlova;Pavlova gyrans;strain CCMP-608 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1466 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00305 Diacronema_lutheri RCC1537 Pavlova_lutheri Diacronema lutheri Haptophyta basal_haptophytes Eukaryota;Diaphoretickes;Haptista;Haptophyta;Pavlovales;Diacronema;Diacronema lutheri;strain RCC-1537 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1463 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00306 Pavlova_sp_CCMP459 CCMP459 Pavlova N/A Haptophyta basal_haptophytes Eukaryota;Diaphoretickes;Haptista;Haptophyta;Pavlovales;Pavlova;strain CCMP-459 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1139,MMETSP1140,MMETSP1381 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00307 Rebecca_sp_RCC1486 RCC1486 Chrysoculter_rhomboideus Rebecca N/A Haptophyta basal_haptophytes Eukaryota;Diaphoretickes;Haptista;Haptophyta;Pavlovales;Rebecca;strain RCC-1486 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1335 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00308 Calcidiscus_leptoporus RCC1130 Calcidiscus leptoporus Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Coccolithales;Calcidiscaceae;Calcidiscus;Calcidiscus leptoporus;strain RCC-1130 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1334 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00309 Chrysotila_carterae CCMP645 Pleurochrysis_carterae Chrysotila carterae Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Coccolithales;Chrysotilaceae;Chrysotila;Chrysotila carterae;strain CCMP-645 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1136,MMETSP1137,MMETSP1138 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00310 Coccolithus_braarudii PLY182G Coccolithus_pelagicus_ssp_braarudi Coccolithus braarudii Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Coccolithales;Coccolithaceae;Coccolithus;Coccolithus braarudii;strain PLY182G no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0164 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00311 Isochrysis_galbana CCMP1323 Isochrysis galbana Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Isochrysidales;Isochrysidaceae;Isochrysis;Isochrysis galbana;strain CCMP-1323 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0595,MMETSP0943,MMETSP0944 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00312 Isochrysis_sp_CCMP1244 CCMP1244 Isochrysis N/A Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Isochrysidales;Isochrysidaceae;Isochrysis;strain CCMP-1244 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1090,MMETSP1388 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00313 Isochrysis_sp_CCMP1324 CCMP1324 Isochrysis N/A Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Isochrysidales;Isochrysidaceae;Isochrysis;strain CCMP-1324 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1129,MMETSP1130,MMETSP1131,MMETSP1132 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00314 Emiliania_huxleyi CCMP1516 Emiliania huxleyi Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Isochrysidales;Noelaerhabdaceae;Emiliania;Emiliania huxleyi;strain CCMP-1516 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/372/725/GCF_000372725.1_Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0/GCF_000372725.1_Emiliana_huxleyi_CCMP1516_main_genome_assembly_v1.0_protein.faa.gz Emiliana huxleyi CCMP1516 main genome assembly v1.0 10.1038/nature12221 none genome EP00315 Gephyrocapsa_oceanica RCC1303 Gephyrocapsa oceanica Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Isochrysidales;Noelaerhabdaceae;Gephyrocapsa;Gephyrocapsa oceanica;strain RCC-1303 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1363,MMETSP1364,MMETSP1365,MMETSP1366 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00316 Scyphosphaera_apsteinii RCC1455 Scyphosphaera apsteinii Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Calcihaptophycidae;Zygodiscales;Pontosphaeraceae;Scyphosphaera;Scyphosphaera apsteinii;strain RCC-1455 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1333 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00317 Phaeocystis_antarctica CaronLabIsolate,CCMP1374 Phaeocystis antarctica Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Phaeocystales;Phaeocystis;Phaeocystis antarctica yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP1100,MMETSP1444 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00318 Phaeocystis_cordata RCC1383 Phaeocystis cordata Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Phaeocystales;Phaeocystis;Phaeocystis cordata;strain RCC-1383 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1465 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00319 Phaeocystis_globosa CCMP1528 Phaeocystis globosa Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Phaeocystales;Phaeocystis;Phaeocystis globosa;strain CCMP-1528 no https://zenodo.org/record/1476491/files/phaeocystisglobosa_euk_seqs.fasta?download=1 phaeocystisglobosa_euk_seqs 10.1111/jeu.12727 translate mRNA transcriptome EP00320 Phaeocystis_rex CCMP2000 Phaeocystis rex Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Phaeocystales;Phaeocystis;Phaeocystis rex;strain CCMP-2000 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1178 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00321 Phaeocystis_sp_CCMP2710 CCMP2710 Phaeocystis N/A Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Phaeocystales;Phaeocystis;strain CCMP-2710 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1162 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00322 Chrysochromulina_rotalis UIO044 Chrysochromulina rotalis Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Prymnesiales;Chrysochromulinaceae;Chrysochromulina;Chrysochromulina rotalis;strain UIO044 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0287 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00323 Chrysochromulina_tobin CCMP291 Chrysochromulina tobin Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Prymnesiales;Chrysochromulinaceae;Chrysochromulina;Chrysochromulina tobin;strain CCMP-291 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/275/005/GCA_001275005.1_Ctobinv2/GCA_001275005.1_Ctobinv2_protein.faa.gz Ctobinv2 10.1371/journal.pgen.1005469 none genome EP00324 Dicrateria_rotunda RCC918 Imantonia_rotunda Dicrateria rotunda Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Prymnesiales;Prymnesiaceae;Dicrateria;Dicrateria rotunda;strain RCC-918 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1474 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00325 Haptolina_brevifila UTEX LB 985 Chrysochromulina_brevifilum Haptolina brevifila Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Prymnesiales;Prymnesiaceae;Haptolina;Haptolina brevifila;strain UTEX-LB-985 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1094 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00326 Haptolina_ericina CCMP281 Chrysochromulina_ericina Haptolina ericina Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Prymnesiales;Prymnesiaceae;Haptolina;Haptolina ericina;strain CCMP-281 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1096 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00327 Prymnesium_parvum Texoma1 Prymnesium parvum Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Prymnesiales;Prymnesiaceae;Prymnesium;Prymnesium parvum;strain Texoma1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0006,MMETSP0007,MMETSP0008,MMETSP0814,MMETSP0815,MMETSP1083 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00328 Prymnesium_polylepis CCMP1757,UIO037 Chrysochromulina_polylepis Prymnesium polylepis Haptophyta Prymnesiophyceae Eukaryota;Diaphoretickes;Haptista;Haptophyta;Prymnesiophyceae;Prymnesiales;Prymnesiaceae;Prymnesium;Prymnesium polylepis yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0143,MMETSP0145,MMETSP0146,MMETSP0147,MMETSP0286 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00329 Picozoa_sp_Boothbay Boothbay-MS584-5,Boothbay-MS584-11,Boothbay-MS584-22 Picobiliphyte_sp N/A N/A Picozoa Picozoa Eukaryota;Diaphoretickes;Picozoa yes http://dbdata.rutgers.edu/data/pico Yoon et al. 2010, single cell genome study of Picobiliphytes 10.1126/science.1203163 transeq single-cell genome EP00330 Aristerostoma_sp_ATCC50986 ATCC50986 Aristerostoma N/A Alveolata Colpodea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Colpodea;Cyrtolophosidida;Aristerostoma;strain ATCC-50986 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0125 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00331 Platyophrya_macrostoma WH Platyophrya macrostoma Alveolata Colpodea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Colpodea;Platyophryida;Platyophrya;Platyophrya macrostoma;strain WH no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0127 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00332 Ichthyophthirius_multifiliis isolate G5; serotype D Ichthyophthirius multifiliis Alveolata Oligohymenophorea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Oligohymenophorea;Hymenostomatia;Ophryoglenida;Ichthyophthirius;Ichthyophthirius multifiliis;strain G5-serotype-D no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/220/395/GCF_000220395.1_JCVI-IMG1-V.1/GCF_000220395.1_JCVI-IMG1-V.1_protein.faa.gz JCVI-IMG1-V.1 10.1186/gb-2011-12-10-r100 none genome EP00333 Tetrahymena_thermophila SB210 Tetrahymena thermophila Alveolata Oligohymenophorea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Oligohymenophorea;Hymenostomatia;Tetrahymenida;Tetrahymena;Tetrahymena thermophila;strain SB210 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/189/635/GCF_000189635.1_JCVI-TTA1-2.2/GCF_000189635.1_JCVI-TTA1-2.2_protein.faa.gz JCVI-TTA1-2.2 10.1371/journal.pbio.0040286 none genome EP00334 Paramecium_tetraurelia d4-2 Paramecium tetraurelia Alveolata Oligohymenophorea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Oligohymenophorea;Peniculia;Paramecium;Paramecium tetraurelia;strain d4-2 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/165/425/GCF_000165425.1_ASM16542v1/GCF_000165425.1_ASM16542v1_protein.faa.gz ASM16542v1 10.1038/nature05230 none genome EP00335 Anophryoides_haemophila AH6 Anophryoides haemophila Alveolata Oligohymenophorea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Oligohymenophorea;Scuticociliatia;Philasterida;Anophryoides;Anophryoides haemophila;strain AH6 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1018,MMETSP1019 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00336 Pseudocohnilembus_persalinus N/A Pseudocohnilembus persalinus Alveolata Oligohymenophorea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Oligohymenophorea;Scuticociliatia;Philasterida;Pseudocohnilembus;Pseudocohnilembus persalinus;strain shrimp-farming pond, Qingdao, China no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/447/515/GCA_001447515.1_ASM144751v1/GCA_001447515.1_ASM144751v1_protein.faa.gz ASM144751v1 10.1038/srep15470 none genome EP00337 Uronema_sp_Bbcil Bbcil Uronema N/A Alveolata Oligohymenophorea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Oligohymenophorea;Scuticociliatia;Philasterida;Uronema;strain Bbcil no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0018 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00338 Chilodonella_uncinata ATCC 50194 Chilodonella uncinata Alveolata Phyllopharyngea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Phyllopharyngea;Subkinetalia;Cyrtophoria;Chilodonellidae;Chilodonella;Chilodonella uncinata;strain ATCC-50194 no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GA/BU/GABU01/GABU01.1.fsa_nt.gz GABU01000000 10.2478/prge-2012-0002 translate mRNA (genetic code 6) transcriptome EP00339 Tiarina_fusus LIS Tiarina fusus Alveolata other_CON3P Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"CON3P";Prostomatea;Colepidae;Tiarina;Tiarina fusus;strain LIS no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0472 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00340 Litonotus_pictus P1 Litonotus pictus Alveolata Litostomatea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Lamellicorticata;Litostomatea;"core L";Pleurostomatida;Litonotidae;Litonotus;Litonotus pictus;strain P1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0209 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00341 Mesodinium_pulex SPMC105 Mesodinium pulex Alveolata other_SAL Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Mesodiniidae;Mesodinium;Mesodinium pulex;strain SPMC105 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0467 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00342 Mesodinium_rubrum CCMP2563 Myrionecta_rubra Mesodinium rubrum Alveolata other_SAL Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Mesodiniidae;Mesodinium;Mesodinium rubrum;strain CCMP-2563 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0798 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00343 Euplotes_focardii TN1 Euplotes focardii Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Euplotida;Euplotes;"core E";"Eparkei clade";Euplotes focardii;strain TN1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0205,MMETSP0206 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00344 Euplotes_crassus CT5 Moneuplotes_crassus Euplotes crassus Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Euplotida;Euplotes;"core E";"Moneuplotes clade";Euplotes crassus;strain CT5 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1380 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00345 Euplotes_harpa FSP1.4 Euplotes harpa Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Euplotida;Euplotes;"core E";Euplotes harpa;strain FSP1.4 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0213 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00346 Oxytricha_trifallax JRB310 Oxytricha trifallax Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Hypotrichia;"core oxytrichids";"Sterkiella clade";Oxytricha;Oxytricha trifallax;strain JRB310 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/711/775/GCA_000711775.1_Oxytricha_MIC_v2.0/GCA_000711775.1_Oxytricha_MIC_v2.0_protein.faa.gz Oxytricha_MIC_v2.0 10.1016/j.cell.2014.07.034 none genome EP00347 Sterkiella_histriomuscorum BA Sterkiella histriomuscorum Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Hypotrichia;"core oxytrichids";"Sterkiella clade";Sterkiella;Sterkiella histriomuscorum;strain BA no https://www.ncbi.nlm.nih.gov/genome/347?genome_assembly_id=260499 ASM127330v2 10.1093/gbe/evv172 transeq genome EP00348 Stylonychia_lemnae asm_v1.0 Stylonychia lemnae Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Hypotrichia;"core oxytrichids";Stylonychia;Stylonychia lemnae;strain asm_v1.0 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/751/175/GCA_000751175.1_Stylonychia_lemnae_asm_v1.0/GCA_000751175.1_Stylonychia_lemnae_asm_v1.0_protein.faa.gz Stylonychia_lemnae_asm_v1.0 10.1093/gbe/evv172 none genome EP00349 Pseudokeronopsis_sp_Brazil Brazil Pseudokeronopsis N/A Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Hypotrichia;"core urostyloids";"Pseudokeronopsis clade";Pseudokeronopsis;strain Brazil no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1396 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00350 Pseudokeronopsis_sp_OXSARD2 OXSARD2 Pseudokeronopsis N/A Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Hypotrichia;"core urostyloids";"Pseudokeronopsis clade";Pseudokeronopsis;strain OXSARD2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0211 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00351 Strombidinopsis_sp_SopsisLIS2011 SopsisLIS2011 Strombidinopsis N/A Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Oligotrichia;Choreotrichida;Strombidinopsidae;Strombidinopsis;strain SopsisLIS2011 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0463 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00352 Strombidinopsis_acuminatum SPMC142 Strombidinopsis acuminatum Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Oligotrichia;Choreotrichida;Strombidinopsidae;Strombidinopsis;Strombidinopsis acuminatum;strain SPMC142 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0126 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00353 Schmidingerella_taraikaensis Fe Narragansett Bay Favella_taraikaensis Schmidingerella taraikaensis Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Oligotrichia;Choreotrichida;Tintinnina;"core T";"CEPR clade";Rhabdonellidae;Schmidingerella;Schmidingerella taraikaensis;strain Fe-Narragansett-Bay no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0434,MMETSP0436 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00354 Favella_ehrenbergii Fehren1 Favella ehrenbergii Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Oligotrichia;Choreotrichida;Tintinnina;Favella;Favella ehrenbergii;strain Fehren1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0123 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00355 Strombidium_rassoulzadegani ras09 "Strombidium" rassoulzadegani Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Oligotrichia;Oligotrichida;"Sapolatum clade";Strombidium rassoulzadegani;strain ras09 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0449 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00356 Strombidium_inclinatum S3 "Strombidium" inclinatum Alveolata Spirotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;"SAL";Spirotrichea;Perilemmaphora;Oligotrichia;Oligotrichida;"Ssulcatum clade";Strombidium inclinatum;strain S3 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0208 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00357 Protocruzia_adherens Boccale Protocruzia adherens Alveolata Protocruzia Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Intramacronucleata;Protocruzia;Protocruzia adherens;strain Boccale no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0216 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00358 Blepharisma_japonicum Stock R1072 Blepharisma japonicum Alveolata Heterotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Postciliodesmatophora;Heterotrichea;Blepharisma;Blepharisma japonicum;strain Stock-R1072 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1395 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00359 Climacostomum_virens StockW-24 Climacostomum virens Alveolata Heterotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Postciliodesmatophora;Heterotrichea;Climacostomum;Climacostomum virens;strain StockW-24 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1397 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00360 Condylostoma_magnum COL2 "Condylostoma" magnum Alveolata Heterotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Postciliodesmatophora;Heterotrichea;Condylostomatidae;"CC clade";"Cminutum lineage";Condylostoma magnum;strain COL2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0210 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00361 Fabrea_salina N/A Fabrea salina Alveolata Heterotrichea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Postciliodesmatophora;Heterotrichea;Fabrea;Fabrea salina no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1345 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00362 Geleiidae_sp_Unknown N/A N/A N/A Alveolata Karyorelictea Eukaryota;Diaphoretickes;Sar;Alveolata;Ciliophora;Postciliodesmatophora;Karyorelictea;Geleiidae no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1317 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00363 Plasmodium_berghei ANKA Plasmodium berghei Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Haemospororida;Plasmodium;Plasmodium berghei;strain ANKA no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/002/375/GCF_900002375.1_PBANKA01/GCF_900002375.1_PBANKA01_protein.faa.gz PBANKA01 10.1126/science.1103717,10.1186/s12915-014-0086-0 none genome EP00364 Plasmodium_chabaudi AS Plasmodium chabaudi Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Haemospororida;Plasmodium;Plasmodium chabaudi;strain AS no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/002/335/GCF_900002335.2_PCHAS01/GCF_900002335.2_PCHAS01_protein.faa.gz PCHAS01 10.1126/science.1103717,10.1186/s12915-014-0086-0 none genome EP00365 Plasmodium_falciparum 3D7 Plasmodium falciparum Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Haemospororida;Plasmodium;Plasmodium falciparum;strain 3D7 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/765/GCF_000002765.4_ASM276v2/GCF_000002765.4_ASM276v2_protein.faa.gz ASM276v2 10.1038/nature01097 none genome EP00366 Plasmodium_knowlesi H Plasmodium knowlesi Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Haemospororida;Plasmodium;Plasmodium knowlesi;strain H no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/355/GCF_000006355.1_ASM635v1/GCF_000006355.1_ASM635v1_protein.faa.gz ASM635v1 10.1038/nature07306 none genome EP00367 Plasmodium_vivax Salvador I Plasmodium vivax Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Haemospororida;Plasmodium;Plasmodium vivax;strain Salvador I no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/415/GCF_000002415.2_ASM241v2/GCF_000002415.2_ASM241v2_protein.faa.gz ASM241v2 10.1038/nature07327 none genome EP00368 Plasmodium_yoelii 17XNL Plasmodium yoelii Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Haemospororida;Plasmodium;Plasmodium yoelii;strain 17XNL no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/002/385/GCF_900002385.1_PY17X01/GCF_900002385.1_PY17X01_protein.faa.gz PY17X01 10.1038/nature01099 none genome EP00369 Babesia_microti R1 "Babesia" microti Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Piroplasmorida;"Bmicroti group";Babesia microti;strain R1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/691/945/GCF_000691945.2_ASM69194v2/GCF_000691945.2_ASM69194v2_protein.faa.gz ASM69194v2 10.1093/nar/gks700 none genome EP00370 Babesia_bigemina PR Babesia bigemina Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Piroplasmorida;Babesia;Babesia bigemina;strain PR no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/981/445/GCF_000981445.1_Bbig001/GCF_000981445.1_Bbig001_protein.faa.gz Bbig001 10.1093/nar/gku322 none genome EP00371 Babesia_bovis Texas T2Bo Babesia bovis Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Piroplasmorida;Babesia;Babesia bovis;strain Texas-T2Bo no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/165/395/GCF_000165395.1_ASM16539v1/GCF_000165395.1_ASM16539v1_protein.faa.gz ASM16539v1 10.1371/journal.ppat.0030148 none genome EP00372 Theileria_equi USDA (Florida) "Theileria" equi Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Piroplasmorida;Theileriidae;Theileria equi;strain USDA-Florida no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/342/415/GCF_000342415.1_JCVI-bewag-v1.1/GCF_000342415.1_JCVI-bewag-v1.1_protein.faa.gz JCVI-bewag-v1.1 10.1186/1471-2164-13-603 none genome EP00373 Theileria_annulata N/A Theileria annulata Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Piroplasmorida;Theileriidae;Theileria;Theileria annulata;strain clone C9 genotype derived from the Ankara isolate no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/003/225/GCF_000003225.3_ASM322v1/GCF_000003225.3_ASM322v1_protein.faa.gz ASM322v1 10.1126/science.1110418 none genome EP00374 Theileria_orientalis Ikeda Theileria orientalis Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Piroplasmorida;Theileriidae;Theileria;Theileria orientalis;strain Ikeda no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/740/895/GCF_000740895.1_ASM74089v1/GCF_000740895.1_ASM74089v1_protein.faa.gz ASM74089v1 10.1128/mBio.00204-12 none genome EP00375 Theileria_parva Muguga Theileria parva Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";"hematozoans";Piroplasmorida;Theileriidae;Theileria;Theileria parva;strain Muguga no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/165/365/GCF_000165365.1_ASM16536v1/GCF_000165365.1_ASM16536v1_protein.faa.gz ASM16536v1 10.1126/science.1110439 none genome EP00376 Eimeria_tenella H,Wis,Nt2 Eimeria tenella Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";Eimeriorina;Eimeria;Eimeria tenella yes ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/499/545/GCF_000499545.2_ETH001/GCF_000499545.2_ETH001_protein.faa.gz ETH001 10.1101/gr.168955.113 none genome EP00377 Hammondia_hammondi HhCatGer041 Hammondia hammondi Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";Eimeriorina;Sarcocystidae;Hammondia;Hammondia hammondi;strain HhCatGer041 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/258/005/GCF_000258005.1_HHA1_v02/GCF_000258005.1_HHA1_v02_protein.faa.gz HHA1 v02 10.1073/pnas.1304322110 none genome EP00378 Neospora_caninum Liverpool Neospora caninum Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";Eimeriorina;Sarcocystidae;Neospora;Neospora caninum;strain Liverpool no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/208/865/GCF_000208865.1_ASM20886v2/GCF_000208865.1_ASM20886v2_protein.faa.gz ASM20886v2 10.1371/journal.ppat.1002567 none genome EP00379 Toxoplasma_gondii ME49 Toxoplasma gondii Alveolata coccidiomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"coccidiomorphea";Eimeriorina;Sarcocystidae;Toxoplasma;Toxoplasma gondii;strain ME49 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/565/GCF_000006565.2_TGA4/GCF_000006565.2_TGA4_protein.faa.gz TGA4 10.1093/nar/gki604 none genome EP00380 Ascogregarina_taiwanensis Taoyoun-1 Ascogregarina taiwanensis Alveolata gregarinomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"gregarinomorphea";"terrestrial gregarines";Actinocephaloidea;Ascogregarina;Ascogregarina taiwanensis;strain Taoyoun-1 no https://www.ncbi.nlm.nih.gov/genome/818?genome_assembly_id=31366 ASM17223v1 10.1093/molbev/msp226 transeq genome EP00381 Gregarina_niphandrodes N/A Gregarina niphandrodes Alveolata gregarinomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"gregarinomorphea";"terrestrial gregarines";Gregarinoidea;Gregarina;Gregarina niphandrodes no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/223/845/GCF_000223845.1_GNI3/GCF_000223845.1_GNI3_protein.faa.gz GNI3 N/A none genome EP00382 Lankesteria_abbotti Grappler Inlet BC Lankesteria_abbottii Lankesteria abbotti Alveolata gregarinomorphea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;"gregarinomorphea";Lecudinoidea;"LL clade";Lankesteria;Lankesteria abbotti;strain Grappler-Inlet-BC no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0372 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00383 Cryptosporidium_hominis TU502 Cryptosporidium hominis Alveolata other_Apicomplexa Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;Cryptosporidium;Cryptosporidium hominis;strain TU502 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/425/GCF_000006425.1_ASM642v1/GCF_000006425.1_ASM642v1_protein.faa.gz ASM642v1 10.1038/nature02977 none genome EP00384 Cryptosporidium_muris RN66 Cryptosporidium muris Alveolata other_Apicomplexa Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;Cryptosporidium;Cryptosporidium muris;strain RN66 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/515/GCF_000006515.1_JCVI_cmg_v1.0/GCF_000006515.1_JCVI_cmg_v1.0_protein.faa.gz JCVI-cmg-v1.0 N/A none genome EP00385 Cryptosporidium_parvum Iowa II Cryptosporidium parvum Alveolata other_Apicomplexa Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Apicomplexa;Cryptosporidium;Cryptosporidium parvum;strain Iowa-II no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/165/345/GCF_000165345.1_ASM16534v1/GCF_000165345.1_ASM16534v1_protein.faa.gz ASM16534v1 10.1126/science.1094786 none genome EP00386 Alphamonas_edax BE-2 Colpodella_edax Alphamonas edax Alveolata Colpodellida Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Colpodellida;Alphamonadaceae;Alphamonas;Alphamonas edax;strain BE-2 no https://www.ncbi.nlm.nih.gov/sites/nuccore?term=279880[BioProject] GDKI01000000 10.1073/pnas.1423790112 translate mRNA transcriptome EP00387 Chromera_velia CCMP2878 Chromera velia Alveolata Colpodellida Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Colpodellida;Chromeraceae;Chromera;Chromera velia;strain CCMP-2878 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0290 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00388 Colpodella_angusta Spi-2,BE-6 Colpodella angusta Alveolata Colpodellida Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Colpodellida;Colpodellaceae;"C clade";Colpodella;Colpodella angusta yes https://www.ncbi.nlm.nih.gov/sites/nuccore?term=279882[BioProject],https://www.ncbi.nlm.nih.gov/sites/nuccore?term=279881[BioProject] GDKJ01000000,GDKK01000000 10.1073/pnas.1423790112 translate mRNA,CD-HIT transcriptome EP00389 Voromonas_pontica G-3 Voromonas pontica Alveolata Colpodellida Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Colpodellida;Colpodellaceae;Voromonas;Voromonas pontica;strain G-3 no https://www.ncbi.nlm.nih.gov/sites/nuccore?term=279879[BioProject] GDKH01000000 10.1073/pnas.1423790112 translate mRNA (min length 50) transcriptome EP00390 Vitrella_brassicaformis CCMP3155 Alveolata_sp Vitrella brassicaformis Alveolata Colpodellida Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Colpodellida;Vitrellaceae;Vitrella;Vitrella brassicaformis;strain CCMP-3155 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/179/505/GCA_001179505.1_Vbrassicaformis/GCA_001179505.1_Vbrassicaformis_protein.faa.gz Vbrassicaformis 10.7554/eLife.06974 none genome EP00391 Amoebophrya_sp_Ameob2 Ameob2 Amoebophrya N/A Alveolata MALV-II Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"core syndiniales";"MALV-II";Amoebophryaceae;Amoebophrya;strain Ameob2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0795 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00392 Amoebophrya_sp_AT5.2 AT5.2 Amoebophrya N/A Alveolata MALV-II Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"core syndiniales";"MALV-II";Amoebophryaceae;Amoebophrya;strain AT5.2 no https://advances.sciencemag.org/highwire/filestream/213364/field_highwire_adjunct_files/3/aav1110_Data_file_S4.zip aav1110_Data_file_S4 10.1126/sciadv.aav1110 none genome EP00393 Amoebophrya_sp_ex-Akashiwo-sanguinea ex Akashiwo sanguinea Amoebophrya N/A Alveolata MALV-II Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"core syndiniales";"MALV-II";Amoebophryaceae;Amoebophrya;strain ex-Akashiwo-sanguinea no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1610331,https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1610330 Amoebophrya sp. ex Akashiwo sanguinea 48 hours post infection mRNA,Amoebophrya sp. ex Akashiwo sanguinea dinospores mRNA 10.1016/j.ympev.2013.10.007 assemble mRNA,translate mRNA,CD-HIT transcriptome EP00394 Amoebophrya_sp_ex-Karlodinium-veneficum ex Karlodinium veneficum Amoebophrya N/A Alveolata MALV-II Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"core syndiniales";"MALV-II";Amoebophryaceae;Amoebophrya;strain ex-Karlodinium-veneficum no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GG/WG/GGWG01/GGWG01.1.fsa_nt.gz GGWG01000000 10.1016/j.ympev.2013.10.007 translate mRNA transcriptome EP00395 MALV2_sp_L67-2 L67-2 N/A N/A Alveolata MALV-II Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"core syndiniales";"MALV-II";strain L67-2 no https://doi.org/10.5061/dryad.hg56n L67-2 10.1038/ismej.2017.167 translated sequence search single-cell genome EP00396 MALV2_sp_LP-1 LP-1 N/A N/A Alveolata MALV-II Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"core syndiniales";"MALV-II";strain LP-1 no https://doi.org/10.5061/dryad.hg56n LP-1 10.1038/ismej.2017.167 translated sequence search single-cell genome EP00397 Hematodinium_sp_SG-2012 SG-2012 Hematodinium N/A Alveolata MALV-IV Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"core syndiniales";"MALV-IV";Hematodinium;strain SG-2012 no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GE/MP/GEMP01/GEMP01.1.fsa_nt.gz GEMP01000000 10.1073/pnas.1423400112 translate mRNA transcriptome EP00398 MALV1a_sp_L67-1 L67-1 N/A N/A Alveolata MALV-I Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"MALV-I";strain L67-1 no https://doi.org/10.5061/dryad.hg56n L67-1 10.1038/ismej.2017.167 translated sequence search single-cell genome EP00399 MALV1b_sp_L67-4 L67-4 N/A N/A Alveolata MALV-I Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"MALV-I";strain L67-4 no https://doi.org/10.5061/dryad.hg56n L67-4 10.1038/ismej.2017.167 translated sequence search single-cell genome EP00400 MALV1a_sp_L67-5 L67-5 N/A N/A Alveolata MALV-I Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"MALV-I";strain L67-5 no https://doi.org/10.5061/dryad.hg56n L67-5 10.1038/ismej.2017.167 translated sequence search single-cell genome EP00401 Gymnodinium_catenatum GC744 "Gymnodinium" catenatum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;"core Gymnodiniales";Gymnodinium catenatum;strain GC744 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0784 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00402 Amphidinium_carterae CCMP1314 Amphidinium carterae Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Amphidinium;"core A";"Acarterae complex";Amphidinium carterae;strain CCMP-1314 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0258,MMETSP0259,MMETSP0398 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00403 Amphidinium_massartii CS-259 Amphidinium massartii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Amphidinium;"core A";"Acarterae complex";Amphidinium massartii;strain CS-259 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0689 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00404 Azadinium_spinosum 3D9 Azadinium spinosum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Amphidomataceae;Azadinium;Azadinium spinosum;strain 3D9 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1036,MMETSP1037,MMETSP1038 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00405 Crypthecodinium_cohnii Seligo Crypthecodinium cohnii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Crypthecodinium;Crypthecodinium cohnii;strain Seligo no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0323,MMETSP0324,MMETSP0325,MMETSP0326 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00406 Dinophysis_acuminata DAEP01 Dinophysis acuminata Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Dinophysiales;"core D";Dinophysiaceae;Dinophysis;Dinophysis acuminata;strain DAEP01 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0797 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00407 Lingulodinium_polyedra CCMP1738 Lingulodinium_polyedrum Lingulodinium polyedra Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"ALP clade";Lingulodinium;Lingulodinium polyedra;strain CCMP-1738 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1032,MMETSP1033,MMETSP1034,MMETSP1035 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00408 Alexandrium_catenella OF101 Alexandrium catenella Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"AO clade";Alexandrium;"Aaffine clade";"Atamarense complex";Alexandrium catenella;strain OF101 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0790 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00409 Alexandrium_fundyense CCMP1719 Alexandrium fundyense Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"AO clade";Alexandrium;"Aaffine clade";"Atamarense complex";Alexandrium fundyense;strain CCMP-1719 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0196,MMETSP0347 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00410 Alexandrium_tamarense CCMP1771 Alexandrium tamarense Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"AO clade";Alexandrium;"Aaffine clade";"Atamarense complex";Alexandrium tamarense;strain CCMP-1771 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0378,MMETSP0380,MMETSP0382,MMETSP0384 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00411 Alexandrium_monilatum CCMP3105 Alexandrium monilatum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"AO clade";Alexandrium;"Ataylorii clade";Alexandrium monilatum;strain CCMP-3105 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0093,MMETSP0095,MMETSP0096,MMETSP0097 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00412 Alexandrium_andersonii CCMP2222 Alexandrium andersonii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"AO clade";Alexandrium;Alexandrium andersonii;strain CCMP-2222 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1436 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00413 Alexandrium_margalefii AMGDE01CS-322 Alexandrium_margalefi Alexandrium margalefii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"AO clade";Alexandrium;Alexandrium margalefii;strain AMGDE01CS-322 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0661 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00414 Alexandrium_minutum CCMP113 Alexandrium minutum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"AO clade";Alexandrium;Alexandrium minutum;strain CCMP-113 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0328 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00415 Alexandrium_ostenfeldii AOSH2 Alexandrium ostenfeldii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"AO clade";Alexandrium;Alexandrium ostenfeldii;strain AOSH2 no N/A OrfPredictor.pep 10.1371/journal.pone.0028012 none transcriptome EP00416 Gambierdiscus_australes CAWD149 Gambierdiscus australes Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"FG clade";Gambierdiscus;Gambierdiscus australes;strain CAWD149 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0766 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00417 Pyrocystis_lunula CCCM517 Pyrocystis lunula Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";"FP clade";Pyrocystis;Pyrocystis lunula;strain CCCM-517 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0229 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00418 Pyrodinium_bahamense pbaha01 Pyrodinium bahamense Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;"core G";Pyrodinium;Pyrodinium bahamense;strain pbaha01 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0796 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00419 Tripos_fusus PA161109 Neoceratium_fusus Tripos fusus Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;Ceratiaceae;Tripos;Tripos fusus;strain PA161109 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1074,MMETSP1075 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00420 Gonyaulax_spinifera CCMP409 Gonyaulax spinifera Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;Gonyaulax;Gonyaulax spinifera;strain CCMP-409 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1439 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00421 Protoceratium_reticulatum CCCM535=CCMP1889 Protoceratium reticulatum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gonyaulacales;Protoceratiaceae;Protoceratium;Protoceratium reticulatum;strain CCCM-535=CCMP-1889 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0228 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00422 Gyrodinium_dominans SPMC 103 Gyrodinium dominans Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Gyrodinium;Gyrodinium dominans;strain SPMC-103 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1148 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00423 Heterocapsa_arctica CCMP445 Heterocapsa arctica Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Heterocapsa;Heterocapsa arctica;strain CCMP-445 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1441 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00424 Heterocapsa_rotundata SCCAP K-0483 Heterocapsa rotundata Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Heterocapsa;Heterocapsa rotundata;strain SCCAP-K-0483 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0503 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00425 Heterocapsa_triquetra CCMP408 Heterocapsa_triquestra Heterocapsa triquetra Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Heterocapsa;Heterocapsa triquetra;strain CCMP-408 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0448 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00426 Karenia_brevis CCMP2229 Karenia brevis Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Kareniaceae;"BK clade";Karenia;Karenia brevis;strain CCMP-2229 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0027,MMETSP0029,MMETSP0030,MMETSP0031 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00427 Karlodinium_veneficum CCMP2283 Karlodinium_micrum Karlodinium veneficum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Kareniaceae;"KT clade";Karlodinium;Karlodinium veneficum;strain CCMP-2283 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1015,MMETSP1016,MMETSP1017 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00428 Durinskia_baltica CSIRO CS-38 Durinskia baltica Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Kryptoperidiniaceae;Durinskia;Durinskia baltica;strain CSIRO-CS-38 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0116,MMETSP0117 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00429 Kryptoperidinium_foliaceum CCMP1326 Kryptoperidinium foliaceum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Kryptoperidiniaceae;Kryptoperidinium;Kryptoperidinium foliaceum;strain CCMP-1326 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0120,MMETSP0121 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00430 Lessardia_elongata SPMC 104 Lessardia elongata Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Podolampadaceae;Lessardia;Lessardia elongata;strain SPMC-104 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1147 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00431 Prorocentrum_lima CCMP684 "Prorocentrum" lima Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Prorocentraceae;"Plima clade";Prorocentrum lima;strain CCMP-684 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0252 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00432 Prorocentrum_cordatum CCMP1329 Prorocentrum_minimum "Prorocentrum" cordatum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Prorocentraceae;"Pmicans clade";Prorocentrum cordatum;strain CCMP-1329 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0053,MMETSP0055,MMETSP0056,MMETSP0057 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00433 Prorocentrum_micans CCCM845 "Prorocentrum" micans Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Prorocentraceae;"Pmicans clade";Prorocentrum micans;strain CCCM-845 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0251 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00434 Breviolum_minutum Mf1.05b.01 Symbiodinium_minutum Breviolum minutum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;"symbiodiniids";Breviolum;Breviolum minutum;strain Mf1.05b.01 no https://marinegenomics.oist.jp/symb/download/symbB.v1.2.augustus.prot.fa.gz symbB.v1.2 10.1016/j.cub.2013.05.062 none genome EP00435 Cladocopium_sp_Y103 Y103 Symbiodinium_sp Cladocopium N/A Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;"symbiodiniids";Cladocopium;strain Y103 no https://marinegenomics.oist.jp/symb/download/symC_aug_40.aa.gz symbC.v1.0 10.1186/s12864-018-4857-9 none genome EP00436 Durusdinium_trenchii CCMP2556 Symbiodinium_trenchii Durusdinium trenchii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;"symbiodiniids";Durusdinium;Durusdinium trenchii;strain CCMP-2556 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1377 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00437 Effrenium_voratum CCMP421 Symbiodinium_sp Effrenium voratum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;"symbiodiniids";Effrenium;Effrenium voratum;strain CCMP-421 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1110 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00438 Fugacium_kawagutii CCMP2468 Symbiodinium_kawagutii Fugacium kawagutii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;"symbiodiniids";Fugacium;Fugacium kawagutii;strain CCMP-2468 no http://web.malab.cn/symka_new/data/Symbiodinium_kawagutii.0819.final.gene.zip 0819.final 10.1126/science.aad0408 none genome EP00439 Symbiodinium_sp_Y106 Y106 Symbiodinium N/A Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;"symbiodiniids";Symbiodinium;strain Y106 no https://marinegenomics.oist.jp/symb/download/syma_aug_37.aa.gz symbA.v1.0 10.1186/s12864-018-4857-9 none genome EP00440 Ansanella_granifera AGSW10 Ansanella granifera Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;Ansanella;Ansanella granifera;strain AGSW10 no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GF/BE/GFBE01/GFBE01.1.fsa_nt.gz GFBE01000000 10.1016/j.margen.2017.01.003 translate mRNA transcriptome EP00441 Pelagodinium_beii RCC1491 Pelagodinium beii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;Pelagodinium;Pelagodinium beii;strain RCC-1491 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1338 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00442 Polarella_glacialis CCMP1383 Polarella glacialis Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Suessiales;Suessiaceae;Polarella;Polarella glacialis;strain CCMP-1383 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0227 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00443 Scrippsiella_trochoidea CCMP3099 Scrippsiella trochoidea Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Thoracosphaerales;"scrippsiellids";Scrippsiella;Scrippsiella trochoidea;strain CCMP-3099 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0270,MMETSP0271,MMETSP0272 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00444 Apocalathium_aciculiferum PAER-2 Peridinium_aciculiferum Apocalathium aciculiferum Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Thoracosphaerales;Apocalathium;Apocalathium aciculiferum;strain PAER-2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0370,MMETSP0371 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00445 Apocalathium_hangoei SHTV-5 Scrippsiella_hangoei Apocalathium hangoei Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Thoracosphaerales;Apocalathium;Apocalathium hangoei;strain SHTV-5 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0359,MMETSP0360,MMETSP0361 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00446 Apocalathium_sp_SHHI-4 SHHI-4 Thoracosphaeraceae_sp_SHHI-4 Apocalathium N/A Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Thoracosphaerales;Apocalathium;strain SHHI-4 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0367,MMETSP0368,MMETSP0369 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00447 Thoracosphaera_heimii CCCM670=CCMP 1069 Thoracosphaera heimii Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Thoracosphaerales;Thoracosphaera;Thoracosphaera heimii;strain CCCM-670=CCMP-1069 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0225 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00448 Togula_jolla CCCM725 Togula jolla Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Togula;Togula jolla;strain CCCM-725 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0224 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00449 Zooxanthella_nutricula RCC3387 Brandtodinium_nutriculum,Brandtodinium_nutricula Zooxanthella nutricula Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Zooxanthella;Zooxanthella nutricula;strain RCC-3387 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1462 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00450 Noctiluca_scintillans N/A Noctiluca scintillans Alveolata other_dinozoans Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Noctilucales;"Noc Spa clade";Noctiluca;Noctiluca scintillans no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0253 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00451 Oxyrrhis_marina N/A Oxyrrhis marina Alveolata other_dinozoans Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Oxyrrhis;Oxyrrhis marina no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0468,MMETSP0469,MMETSP0470,MMETSP0471 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00452 MALV_sp_L67-6 L67-6 N/A N/A Alveolata N/A Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;strain L67-6 no https://doi.org/10.5061/dryad.hg56n L67-6 10.1038/ismej.2017.167 translated sequence search single-cell genome EP00453 Perkinsus_chesapeaki ATCC PRA-65 Perkinsus chesapeaki Alveolata Perkinsea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Perkinsea;Perkinsidae;Perkinsus;Perkinsus chesapeaki;strain ATCC-PRA-65 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0924 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00454 Perkinsus_marinus ATCC 50983 Perkinsus marinus Alveolata Perkinsea Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Perkinsea;Perkinsidae;Perkinsus;Perkinsus marinus;strain ATCC-50983 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/006/405/GCF_000006405.1_JCVI_PMG_1.0/GCF_000006405.1_JCVI_PMG_1.0_protein.faa.gz JCVI_PMG_1.0 N/A none genome EP00455 Lapot_gusevi Lap-1 Lapot gusevi Rhizaria Aquavolonida Eukaryota;Diaphoretickes;Sar;Rhizaria;"eorhiza";Aquavolonida;"NC10 C lineage";Lapot;Lapot gusevi;strain Lap-1 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR7816692 Transcriptome of Lapot gusevi 10.1016/j.ympev.2018.09.004 assemble mRNA,translate mRNA transcriptome EP00456 Euglypha_rotunda CCAP 1520/1 Euglypha rotunda Rhizaria Euglyphida Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;"crown cercozoa";Imbricatea;Euglyphida;Euglyphina;Euglyphidae;Euglypha;"Erotunda clade";Euglypha rotunda;strain CCAP-1520/1 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2006120 Transcriptome of Euglypha rotunda CCAP 1520/1 10.1093/molbev/msv340 assemble mRNA,translate mRNA transcriptome EP00457 Paulinella_chromatophora CCAC 0185 Paulinella chromatophora Rhizaria Euglyphida Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;"crown cercozoa";Imbricatea;Euglyphida;Paulinellidae;Paulinella;Paulinella chromatophora;strain CCAC-0185 no https://www.ncbi.nlm.nih.gov/sites/nuccore?term=311736[BioProject] GEZN01000000 10.1073/pnas.1608016113 translate mRNA transcriptome EP00458 Abollifer_prolabens N/A Abollifer prolabens Rhizaria other_Imbricatea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;"crown cercozoa";Imbricatea;Marimonadida;Abollifer;Abollifer prolabens no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR7816691 Transcriptome of Abollifer prolabens 10.1016/j.ympev.2018.09.004 assemble mRNA,translate mRNA (min length 50) single-cell transcriptome EP00459 Aurigamonas_solis AF-21 Aurigamonas solis Rhizaria other_crown_Cerco Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;"crown cercozoa";Pansomonadida;Aurigamonas;Aurigamonas solis;strain AF-21 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR7816690 Transcriptome of Aurigamonas solis 10.1016/j.ympev.2018.09.004 assemble mRNA,translate mRNA transcriptome EP00460 Paracercomonas_marina ATCC 50344 Paracercomonas marina Rhizaria Paracercomonadida Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;"crown cercozoa";Paracercomonadida;Paracercomonas;"B1a clade";Paracercomonas marina;strain ATCC-50344 no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=166337 Homemade, Regular (lib1_cl) 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00461 Guttulinopsis_vulgaris BF07-8-4 Guttulinopsis vulgaris Rhizaria other_crown_Cerco Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;"crown cercozoa";Sainouroidea;Guttulinopsidae;Guttulinopsis;Guttulinopsis vulgaris;strain BF07-8-4 no N/A OrfPredictor.pep 10.1016/j.cub.2012.04.021 none transcriptome EP00462 Mataza_sp_D1 D1 Mataza N/A Rhizaria other_Thecofilosea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;"crown cercozoa";Thecofilosea;Matazida;Mataza;strain D1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0086,MMETSP0087 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00463 Aulacantha_scolymantha N/A Aulacantha scolymantha Rhizaria Phaeodarea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;"crown cercozoa";Thecofilosea;Phaeodarea;"Phaeo clade I";Aulacantha;Aulacantha scolymantha no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1734688 Transcriptome or Gene expression 10.3389/fmicb.2015.00098 assemble mRNA,translate mRNA (min length 50) transcriptome EP00464 Amorphochlora_amoebiformis CCMP2058 Lotharella_amoebiformis Amorphochlora amoebiformis Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Amorphochlora;Amorphochlora amoebiformis;strain CCMP-2058 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0042 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00465 Bigelowiella_longifila CCMP242 Bigelowiella longifila Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Bigelowiella;Bigelowiella longifila;strain CCMP-242 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1359 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00466 Bigelowiella_natans CCMP2755 Bigelowiella natans Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Bigelowiella;Bigelowiella natans;strain CCMP-2755 no https://genome.jgi.doe.gov/Bigna1/Bigna1.download.html Bigna1 10.1038/nature11681 none genome EP00467 Chlorarachnion_reptans CCCM449 Chlorarachnion reptans Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Chlorarachnion;Chlorarachnion reptans;strain CCCM-449 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0109 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00468 Gymnochlora_sp_CCMP2014 CCMP2014 Gymnochlora N/A Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Gymnochlora;strain CCMP-2014 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0110 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00469 Lotharella_globosa CCCM811 Lotharella globosa Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Lotharella;Lotharella globosa;strain CCCM-811 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0111,MMETSP0112 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00470 Lotharella_oceanica CCMP622 Lotharella oceanica Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Lotharella;Lotharella oceanica;strain CCMP-622 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0040 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00471 Norrisiella_sphaerica BC52 Norrisiella sphaerica Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Norrisiella;Norrisiella sphaerica;strain BC52 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0113 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00472 Partenskyella_glossopodia RCC365 Partenskyella glossopodia Rhizaria Chlorarachnea Eukaryota;Diaphoretickes;Sar;Rhizaria;Cercozoa;Chlorarachnea;"core chlorarachneans";Chlorarachniophyceae;Partenskyella;Partenskyella glossopodia;strain RCC-365 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1318 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00473 Plasmodiophora_brassicae e3 Plasmodiophora brassicae Rhizaria Phytomyxea Eukaryota;Diaphoretickes;Sar;Rhizaria;Endomyxa;"phytorhiza";Phytomyxea;"core phytomyxids";Plasmodiophorida;Plasmodiophora;Plasmodiophora brassicae;strain e3 no ftp://ftp.ensemblgenomes.org/pub/protists/release-43/fasta/protists_rhizaria1_collection/plasmodiophora_brassicae/pep/Plasmodiophora_brassicae.pbe3.h15.pep.all.fa.gz pbe3.h15 10.1038/srep11153 none genome EP00474 Spongospora_subterranea N/A "Spongospora" subterranea Rhizaria Phytomyxea Eukaryota;Diaphoretickes;Sar;Rhizaria;Endomyxa;"phytorhiza";Phytomyxea;"core phytomyxids";Plasmodiophorida;Spongospora subterranea no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/HA/CM/HACM01/HACM01P.1.fsa_aa.gz HACM01000000 10.1038/srep11153 none transcriptome EP00475 Leptophrys_vorax CCAC 3422B Leptophrys vorax Rhizaria Vampyrellida Eukaryota;Diaphoretickes;Sar;Rhizaria;Endomyxa;"phytorhiza";Vampyrellida;"Vamp clade A";Leptophryidae;Leptophrys;Leptophrys vorax;strain CCAC-3422B no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2003407 Transcriptome of Leptophrys_vorax 10.1093/molbev/msv340 assemble mRNA,translate mRNA transcriptome EP00476 Minchinia_chitonis N/A Minchinia chitonis Rhizaria Ascetosporea Eukaryota;Diaphoretickes;Sar;Rhizaria;Endomyxa;"zoorhiza";Ascetosporea;Haplosporida;"crown haplosporids";Minchinia;Minchinia chitonis no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0186 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00477 Mikrocytos_mackini N/A Mikrocytos mackini Rhizaria Ascetosporea Eukaryota;Diaphoretickes;Sar;Rhizaria;Endomyxa;"zoorhiza";Ascetosporea;Mikrocytida;Mikrocytos;Mikrocytos mackini no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GA/HX/GAHX01/GAHX01.1.fsa_nt.gz GAHX01000000 10.1016/j.cub.2013.06.033 translate mRNA (min length 50) transcriptome EP00478 Filoreta_tenera RL6 Corallomyxa_sp Filoreta tenera Rhizaria other_Zoorhiza Eukaryota;Diaphoretickes;Sar;Rhizaria;Endomyxa;"zoorhiza";Filoreta;"Ftenera clade";Filoreta tenera;strain RL6 no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GA/BV/GABV01/GABV01.1.fsa_nt.gz GABV01000000 10.2478/prge-2012-0002 translate mRNA transcriptome EP00479 Gromia_sphaerica N/A Gromia sphaerica Rhizaria other_Zoorhiza Eukaryota;Diaphoretickes;Sar;Rhizaria;Endomyxa;"zoorhiza";Gromia;Gromia sphaerica;strain Bahamian-motile-ecomorph no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2003399 transcriptome, 454GS-FLX 10.1093/molbev/msv340 assemble mRNA,translate mRNA (min length 50) transcriptome EP00480 Reticulomyxa_filosa Lake Möwensee Reticulomyxa filosa Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;"monothalamid clade K";Reticulomyxa;Reticulomyxa filosa;strain Lake-Möwensee no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/512/085/GCA_000512085.1_Reti_assembly1.0/GCA_000512085.1_Reti_assembly1.0_protein.faa.gz Reti_assembly1.0 10.1016/j.cub.2013.11.027 none genome EP00481 Brizalina_sp_1-RS-2013 1 RS-2013 Brizalina N/A Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Globothalamea;Rotaliida;"R clade 1";Bolivinitidae;Brizalina;strain 1-RS-2013 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2003388 Transcriptome of Brizalina sp. 10.1093/molbev/msv340 assemble mRNA,translate mRNA transcriptome EP00482 Globobulimina_sp_turgida-auriculata turgida,auriculata Globobulimina N/A Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Globothalamea;Rotaliida;"R clade 1";Globobuliminidae;Globobulimina yes ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GG/CE/GGCE01/GGCE01.1.fsa_nt.gz,ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GG/CD/GGCD01/GGCD01.1.fsa_nt.gz,ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GG/CD/GGCD01/GGCD01.2.fsa_nt.gz GloT14,GloT15 10.1016/j.cub.2018.06.027 translate mRNA,CD-HIT transcriptome EP00483 Globobulimina_turgida N/A Globobulimina turgida Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Globothalamea;Rotaliida;"R clade 1";Globobuliminidae;Globobulimina;Globobulimina turgida no N/A OrfPredictor.pep 10.1093/molbev/msv340 none transcriptome EP00484 Ammonia_sp_Unknown N/A Ammonia N/A Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Globothalamea;Rotaliida;"R clade 2";Ammoniidae;Ammonia no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1384 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00485 Elphidium_margaritaceum N/A Elphidium margaritaceum Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Globothalamea;Rotaliida;"R clade 2";Elphidiidae;Elphidium;Elphidium margaritaceum no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1385 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00486 Rosalina_sp_Unknown N/A Rosalina N/A Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Globothalamea;Rotaliida;"R clade 2";Rosalinidae;Rosalina no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0190 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00487 Bulimina_marginata N/A Bulimina marginata Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Globothalamea;Rotaliida;"R clade 3";Buliminidae;Bulimina;Bulimina marginata no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2003397 Transcriptome of Bulimina marginata 10.1093/molbev/msv340 assemble mRNA,translate mRNA transcriptome EP00488 Nonionellina_sp_1-RS-2012 1 RS-2012 Nonionellina N/A Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Globothalamea;Rotaliida;"R clade 3";Nonionidae;Nonionellina;strain 1-RS-2012 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR2003403 Transcriptome of Nonionellina sp. 10.1093/molbev/msv340 assemble mRNA,translate mRNA transcriptome EP00489 Quinqueloculina_sp_Unknown N/A Quinqueloculina N/A Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Tubothalamea;Miliolida;Quinqueloculina no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=153269 LIBEST_021563 10.1371/journal.pone.0000790 trimseq,translate mRNA (min length 50),CD-HIT EST EP00490 Sorites_sp_Unknown N/A Sorites N/A Rhizaria Foraminifera Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Foraminifera;Tubothalamea;Miliolida;Soritidae;Sorites no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0191 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00491 Sticholonche_zanclea AKK-51 2016 Sticholonche zanclea Rhizaria RAD-clades Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Radiolaria;"RAD-B clade";Taxopodida;Sticholonche;Sticholonche zanclea;strain AKK-51-2016 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5929439 single cell 10.1093/molbev/msx075 assemble mRNA,translate mRNA single-cell transcriptome EP00492 Amphilonche_elongata N/A "Amphilonche" elongata Rhizaria Acantharea Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Radiolaria;Acantharea;"acantharean clade F";Amphilonche elongata no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1734678 Transcriptome or Gene expression 10.3389/fmicb.2015.00098 assemble mRNA,translate mRNA (min length 50) transcriptome EP00493 Phyllostaurus_siculus N/A "Phyllostaurus" siculus Rhizaria Acantharea Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Radiolaria;Acantharea;"acantharean clade F";Phyllostaurus siculus no N/A OrfPredictor.pep 10.1093/molbev/msv340 none transcriptome EP00494 Astrolonche_serrata N/A Astrolonche serrata Rhizaria Acantharea Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Radiolaria;Acantharea;Astrolonche;Astrolonche serrata no N/A OrfPredictor.pep 10.1093/molbev/msv340 none transcriptome EP00495 Collozoum_sp_1-RS-2012 1 RS-2012 Collozoum N/A Rhizaria Collodaria Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Radiolaria;Polycystinea;"CN clade";"core CNs";"CO clade";Collodaria;Sphaerozoidae;Collozoum;strain 1-RS-2012 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1744093 Transcriptome or Gene expression 10.3389/fmicb.2015.00098 assemble mRNA,translate mRNA (min length 50) transcriptome EP00496 Lithomelissa_setosa AKK-54 2016 Lithomelissa setosa Rhizaria nassellarians Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Radiolaria;Polycystinea;"CN clade";"core CNs";"nassellarians III-IV";Plagiacanthoidea;Lithomelissa;Lithomelissa setosa;strain AKK-54-2016 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5929440 single cell 10.1093/molbev/msx075 assemble mRNA,translate mRNA single-cell transcriptome EP00497 Spongosphaera_streptacantha N/A Spongosphaera streptacantha Rhizaria Spumellaria Eukaryota;Diaphoretickes;Sar;Rhizaria;Retaria;Radiolaria;Polycystinea;Spumellaria;"S clade I";Spongosphaera;Spongosphaera streptacantha no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR1734679 Transcriptome or Gene expression 10.3389/fmicb.2015.00098 assemble mRNA,translate mRNA (min length 50) transcriptome EP00499 Cafeteria_sp_CaronLabIsolate CaronLabIsolate Cafeteria N/A Stramenopiles Bicosoecida Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Opalozoa;Bicosoecida;"core bicosoecids";Cafeteria;strain CaronLabIsolate no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1104 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00500 Bicosoecida_sp_ms1 ms1 Bicosoecid_sp N/A N/A Stramenopiles Bicosoecida Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Opalozoa;Bicosoecida;strain ms1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0115 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00501 MAST3_sp_TOSAG23-6 TOSAG23-6 N/A N/A Stramenopiles Nanomonadea Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Opalozoa;Nanomonadea;strain TOSAG23-6 no http://www.genoscope.cns.fr/tara/ TOSAG23-6 10.1038/s41467-017-02235-3 none single-cell genome EP00502 MAST3_sp_TOSAG41-2 TOSAG41-2 N/A N/A Stramenopiles Nanomonadea Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Opalozoa;Nanomonadea;strain TOSAG41-2 no http://www.genoscope.cns.fr/tara/ TOSAG41-2 10.1038/s41467-017-02235-3 none single-cell genome EP00503 Blastocystis_sp_subtype4 subtype4 Blastocystis N/A Stramenopiles Opalinata Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Opalozoa;Opalinata;Blastocystis;"Bhominis clade";strain subtype4 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/743/755/GCF_000743755.1_ASM74375v1/GCF_000743755.1_ASM74375v1_protein.faa.gz ASM74375v1 10.1016/j.gdata.2015.01.009 none genome EP00504 Blastocystis_sp_subtype7 subtype7 Blastocystis N/A Stramenopiles Opalinata Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Opalozoa;Opalinata;Blastocystis;"Bhominis clade";strain subtype7 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/665/GCF_000151665.1_ASM15166v1/GCF_000151665.1_ASM15166v1_protein.faa.gz ASM15166v1 10.1186/gb-2011-12-3-r29 none genome EP00505 MAST4_sp_SCG-Rhode-Island SCG-Rhode-Island N/A N/A Stramenopiles other_Sagenista Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;"MAST-04";strain SCG-Rhode-Island no http://cyanophora.rutgers.edu/MAST4/MAST4_proteins.fa MAST4_proteins 10.1038/srep04780 none single-cell genome EP00506 MAST4_sp_TOSAG23-1 TOSAG23-1 N/A N/A Stramenopiles other_Sagenista Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;"MAST-04";strain TOSAG23-1 no http://www.genoscope.cns.fr/tara/ TOSAG23-1 10.1038/s41467-017-02235-3 none single-cell genome EP00507 MAST4_sp_TOSAG23-2 TOSAG23-2 N/A N/A Stramenopiles other_Sagenista Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;"MAST-04";strain TOSAG23-2 no http://www.genoscope.cns.fr/tara/ TOSAG23-2 10.1038/s41467-017-02235-3 none single-cell genome EP00508 MAST4_sp_TOSAG23-3 TOSAG23-3 N/A N/A Stramenopiles other_Sagenista Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;"MAST-04";strain TOSAG23-3 no http://www.genoscope.cns.fr/tara/ TOSAG23-3 10.1038/s41467-017-02235-3 none single-cell genome EP00509 MAST4_sp_TOSAG41-1 TOSAG41-1 N/A N/A Stramenopiles other_Sagenista Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;"MAST-04";strain TOSAG41-1 no http://www.genoscope.cns.fr/tara/ TOSAG41-1 10.1038/s41467-017-02235-3 none single-cell genome EP00510 Aplanochytrium_kerguelense PBS07 Aplanochytrium kerguelense Stramenopiles Labyrinthulomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;Labyrinthulomycetes;Labyrinthulida;Aplanochytrium;Aplanochytrium kerguelense;strain PBS07 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0954,MMETSP0955,MMETSP0956,MMETSP0957 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00511 Aplanochytrium_stocchinoi GSBS06 Aplanochytrium stocchinoi Stramenopiles Labyrinthulomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;Labyrinthulomycetes;Labyrinthulida;Aplanochytrium;Aplanochytrium stocchinoi;strain GSBS06 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1346,MMETSP1347,MMETSP1348,MMETSP1349 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00512 Aurantiochytrium_limacinum ATCC MYA-1381 Aurantiochytrium limacinum Stramenopiles Labyrinthulomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;Labyrinthulomycetes;Thraustochytrida;"AHM clade";Aurantiochytrium;Aurantiochytrium limacinum;strain ATCC-MYA-1381 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0958,MMETSP0959,MMETSP0960,MMETSP0961 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00513 Hondaea_fermentalgiana CCAP 4062/3 Hondaea fermentalgiana Stramenopiles Labyrinthulomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;Labyrinthulomycetes;Thraustochytrida;"AHM clade";Hondaea;Hondaea fermentalgiana;strain CCAP-4062/3 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/002/897/355/GCA_002897355.1_Aurantiochytrium_FCC1311_v1/GCA_002897355.1_Aurantiochytrium_FCC1311_v1_protein.faa.gz Aurantiochytrium_FCC1311_v1 10.1128/genomeA.01335-17 none genome EP00514 Thraustochytrium_sp_LLF1b LLF1b "Thraustochytrium" N/A Stramenopiles Labyrinthulomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;Labyrinthulomycetes;Thraustochytrida;"Tkinnei group";strain LLF1b no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0198,MMETSP0199 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00515 Schizochytrium_aggregatum ATCC 28209 Schizochytrium aggregatum Stramenopiles Labyrinthulomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;Labyrinthulomycetes;Thraustochytrida;Schizochytrium;Schizochytrium aggregatum;strain ATCC-28209 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0962,MMETSP0963,MMETSP0964,MMETSP0965 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00516 Thraustochytrida_sp_NY0313808BC1 NY0313808BC1 N/A N/A Stramenopiles Labyrinthulomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;Labyrinthulomycetes;Thraustochytrida;strain NY0313808BC1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0098,MMETSP0099,MMETSP0100 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00517 Thraustochytrida_sp_NY07348D NY07348D N/A N/A Stramenopiles Labyrinthulomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Sagenista;Labyrinthulomycetes;Thraustochytrida;strain NY07348D no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1433 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00518 Triparma_eleuthera RCC208,RCC2347 Bolidomonas_pacifica Triparma eleuthera Stramenopiles other_ochrophytes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Bolidophyceae;Triparma;Triparma eleuthera yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP1319,MMETSP1320 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00519 Triparma_laevis RCC1657 Bolidomonas_sp Triparma laevis Stramenopiles other_ochrophytes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Bolidophyceae;Triparma;Triparma laevis;strain RCC-1657 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1321 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00520 Triparma_pacifica CCMP1866 Bolidomonas_pacifica Triparma pacifica Stramenopiles other_ochrophytes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Bolidophyceae;Triparma;Triparma pacifica;strain CCMP-1866 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0785 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00521 Asterionellopsis_glacialis CCMP134 Asterionellopsis glacialis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Asterionellopsis;Asterionellopsis glacialis;strain CCMP-134 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0705,MMETSP0706,MMETSP0707,MMETSP0708 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00522 Amphiprora_paludosa CCMP125 Amphiprora paludosa Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Amphiprora;Amphiprora paludosa;strain CCMP-125 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1065 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00523 Amphiprora_sp_CCMP467 CCMP467 Amphiprora N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Amphiprora;strain CCMP-467 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0724,MMETSP0725,MMETSP0726,MMETSP0727 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00524 Amphora_coffeiformis CCMP127 Amphora_coffeaeformis Amphora coffeiformis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Amphora;Amphora coffeiformis;strain CCMP-127 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0316,MMETSP0317,MMETSP0318 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00525 Craspedostauros_australis CCMP3328 Craspedostauros australis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Craspedostauros;Craspedostauros australis;strain CCMP-3328 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1442 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00526 Cylindrotheca_closterium KMMCC:B-181 Cylindrotheca closterium Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Cylindrotheca;Cylindrotheca closterium;strain KMMCC-B-181 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0017 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00527 Entomoneis_sp_CCMP2396 CCMP2396 Entomoneis N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Entomoneis;strain CCMP-2396 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1443 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00528 Fragilariopsis_cylindrus CCMP1102 Fragilariopsis cylindrus Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Fragilariopsis;Fragilariopsis cylindrus;strain CCMP-1102 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/750/085/GCA_001750085.1_Fracy1/GCA_001750085.1_Fracy1_protein.faa.gz Fracy1 10.1038/nature20803 none genome EP00529 Nitzschia_sp_RCC80 RCC80 Nitzschia N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Nitzschia;strain RCC-80 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0014 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00530 Phaeodactylum_tricornutum CCAP 1055/1 Phaeodactylum tricornutum Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Phaeodactylum;Phaeodactylum tricornutum;strain CCAP-1055/1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/150/955/GCF_000150955.2_ASM15095v2/GCF_000150955.2_ASM15095v2_protein.faa.gz ASM15095v2 10.1038/nature07410 none genome EP00531 Pseudo-nitzschia_arenysensis B593 Pseudo-nitzschia arenysensis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Pseudo-nitzschia;Pseudo-nitzschia arenysensis;strain B593 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0329 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00532 Pseudo-nitzschia_australis 10249 10 AB Pseudo-nitzschia australis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Pseudo-nitzschia;Pseudo-nitzschia australis;strain 10249-10-AB no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0139,MMETSP0140,MMETSP0141,MMETSP0142 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00533 Pseudo-nitzschia_delicatissima B596,UNC1205 Pseudo-nitzschia delicatissima Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Pseudo-nitzschia;Pseudo-nitzschia delicatissima yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0327,MMETSP1432 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00534 Pseudo-nitzschia_fraudulenta WWA7 Pseudo-nitzschia fraudulenta Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Pseudo-nitzschia;Pseudo-nitzschia fraudulenta;strain WWA7 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0850,MMETSP0851,MMETSP0852,MMETSP0853 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00535 Pseudo-nitzschia_heimii UNC1101 Pseudo-nitzschia heimii Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Pseudo-nitzschia;Pseudo-nitzschia heimii;strain UNC1101 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1423 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00536 Pseudo-nitzschia_multiseries CLN-47 Pseudonitzschia_multiseries Pseudo-nitzschia multiseries Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Pseudo-nitzschia;Pseudo-nitzschia multiseries;strain CLN-47 no https://genome.jgi.doe.gov/portal/Psemu1/download/Psemu1_GeneCatalog_proteins_20111011.aa.fasta.gz Psemu1 10.1038/nature14488 none genome EP00537 Pseudo-nitzschia_pungens cf. cingulata,cf. pungens Pseudo-nitzschia pungens Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Pseudo-nitzschia;Pseudo-nitzschia pungens yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP1060,MMETSP1061 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00538 Stauroneis_constricta CCMP1120 Stauroneis constricta Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Stauroneis;Stauroneis constricta;strain CCMP-1120 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1352 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00539 Tryblionella_compressa CCMP561 Nitzschia_punctata Tryblionella compressa Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Tryblionella;Tryblionella compressa;strain CCMP-561 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0744,MMETSP0745,MMETSP0746,MMETSP0747 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00540 Astrosyne_radiata 13vi08-1A Astrosyne radiata Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Astrosyne;Astrosyne radiata;strain 13vi08-1A no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0418 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00541 Cyclophora_tenuis ECT3854 Cyclophora tenuis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Cyclophora;Cyclophora tenuis;strain ECT3854 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0397 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00542 Grammatophora_oceanica CCMP410 Grammatophora oceanica Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Grammatophora;Grammatophora oceanica;strain CCMP-410 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0009 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00543 Licmophora_paradoxa CCMP2313 Licmophora paradoxa Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Licmophora;Licmophora paradoxa;strain CCMP-2313 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1360 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00544 Staurosira_sp_CCMP2646 CCMP2646 Staurosira_complex Staurosira N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Staurosira;strain CCMP-2646 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1361 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00545 Synedropsis_sp_CCMP1620 CCMP1620 Synedropsis_recta Synedropsis N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Synedropsis;strain CCMP-1620 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1176 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00546 Thalassionema_frauenfeldii CCMP1798 Thalassionema frauenfeldii Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Thalassionema;Thalassionema frauenfeldii;strain CCMP-1798 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0786 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00547 Thalassionema_nitzschioides L26-B Thalassionema nitzschioides Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Thalassionema;Thalassionema nitzschioides;strain L26-B no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0156,MMETSP0158 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00548 Thalassiothrix_antarctica L6-D1 Thalassiothrix antarctica Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Fragilariophycidae;Thalassiothrix;Thalassiothrix antarctica;strain L6-D1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0152,MMETSP0154 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00549 Striatella_unipunctata CCMP2910 Striatella unipunctata Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Striatellaceae;Striatella;Striatella unipunctata;strain CCMP-2910 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0800 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00550 Attheya_septentrionalis CCMP2084 Attheya septentrionalis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Biddulphiophyceae;Attheya;Attheya septentrionalis;strain CCMP-2084 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1449 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00551 Chaetoceros_affinis CCMP159 Chaetoceros affinis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Chaetoceros;Chaetoceros affinis;strain CCMP-159 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0088,MMETSP0090,MMETSP0091,MMETSP0092 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00552 Chaetoceros_brevis CCMP164 Chaetoceros brevis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Chaetoceros;Chaetoceros brevis;strain CCMP-164 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1435 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00553 Chaetoceros_curvisetus N/A Chaetoceros curvisetus Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Chaetoceros;Chaetoceros curvisetus no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0716,MMETSP0717,MMETSP0718,MMETSP0719 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00554 Chaetoceros_debilis MM31A-1 Chaetoceros debilis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Chaetoceros;Chaetoceros debilis;strain MM31A-1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0149,MMETSP0150 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00555 Chaetoceros_dichaeta CCMP1751 Chaetoceros dichaeta Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Chaetoceros;Chaetoceros dichaeta;strain CCMP-1751 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1447 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00556 Chaetoceros_neogracilis CCMP1317 Chaetoceros_neogracile Chaetoceros neogracilis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Chaetoceros;Chaetoceros neogracilis;strain CCMP-1317 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0751,MMETSP0752,MMETSP0753,MMETSP0754 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00557 Chaetoceros_sp_GSL56 GSL56 Chaetoceros N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Chaetoceros;strain GSL56 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0200 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00558 Chaetoceros_sp_UNC1202 UNC1202 Chaetoceros N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Chaetoceros;strain UNC1202 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1429 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00559 Dactyliosolen_fragilissimus N/A Dactyliosolen fragilissimus Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Dactyliosolen;Dactyliosolen fragilissimus no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0580 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00560 Eucampia_antarctica CCMP1452 Eucampia antarctica Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Chaetocerotophycidae;Eucampia;Eucampia antarctica;strain CCMP-1452 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1437 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00561 Arcocellulus_cornucervis RCC2270 Minutocellus_polymorphus Arcocellulus cornucervis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Cymatosirophycidae;Arcocellulus;Arcocellulus cornucervis;strain RCC-2270 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1322 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00562 Extubocellulus_spinifer CCMP396 Extubocellulus spinifer Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Cymatosirophycidae;Extubocellulus;Extubocellulus spinifer;strain CCMP-396 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0696,MMETSP0697,MMETSP0698,MMETSP0699 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00563 Minutocellus_polymorphus CCMP3303,NH13 Minutocellus polymorphus Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Cymatosirophycidae;Minutocellus;Minutocellus polymorphus yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP1070,MMETSP1434 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00564 Ditylum_brightwellii GSO105 Ditylum brightwellii Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Lithodesmiophycidae;Ditylum;Ditylum brightwellii;strain GSO105 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0998,MMETSP1001 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00565 Helicotheca_tamesis CCMP826 Helicotheca_tamensis Helicotheca tamesis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Lithodesmiophycidae;Helicotheca;Helicotheca tamesis;strain CCMP-826 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1171 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00566 Odontella_aurita isolate 1302-5 Odontella aurita Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Odontellophycidae;Odontella;Odontella aurita;strain isolate 1302-5 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0015 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00567 Triceratium_dubium CCMP147 Triceratium dubium Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Odontellophycidae;Triceratium;Triceratium dubium;strain CCMP-147 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1175 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00568 Trieres_chinensis PLY606 Odontella_sinensis Trieres chinensis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Odontellophycidae;Trieres;Trieres chinensis;strain PLY-606 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0160 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00569 Conticribra_weissflogii CCMP1336 Thalassiosira_weissflogii Conticribra weissflogii Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Conticribra;Conticribra weissflogii;strain CCMP-1336 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0878,MMETSP0879,MMETSP0880,MMETSP0881 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00570 Cyclotella_meneghiniana CCMP338 Cyclotella meneghiniana Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Cyclotella;Cyclotella meneghiniana;strain CCMP-338 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1057 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00571 Detonula_confervacea CCMP353 Detonula confervacea Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Detonula;Detonula confervacea;strain CCMP-353 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1058 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00572 Skeletonema_dohrnii SkelB Skeletonema dohrnii Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Skeletonema;Skeletonema dohrnii;strain SkelB no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0562,MMETSP0563 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00573 Skeletonema_grethae CCMP1804 Skeletonema_grethea Skeletonema grethae Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Skeletonema;Skeletonema grethae;strain CCMP-1804 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0578 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00574 Skeletonema_japonicum CCMP2506 Skeletonema japonicum Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Skeletonema;Skeletonema japonicum;strain CCMP-2506 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0593 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00575 Skeletonema_marinoi SM1012Hels-07,SM1012Den-03,skelA,FE7,FE60,UNC1201 Skeletonema marinoi Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Skeletonema;Skeletonema marinoi yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0319,MMETSP0320,MMETSP0918,MMETSP0920,MMETSP1039,MMETSP1040,MMETSP1428 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00576 Skeletonema_menzelii CCMP793 Skeletonema menzelii Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Skeletonema;Skeletonema Skeletonema menzelii;strain CCMP-793 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0603,MMETSP0604 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00577 Skeletonema_sp_RCC1716 RCC1716 Skeletonema_costatum Skeletonema N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Skeletonema;strain RCC-1716 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0013 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00578 Thalassiosira_sp_NH16 NH16 Thalassiosira N/A Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Thalassiosira;strain NH16 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1071 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00579 Thalassiosira_antarctica CCMP982 Thalassiosira antarctica Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Thalassiosira;Thalassiosira antarctica;strain CCMP-982 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0902,MMETSP0903,MMETSP0904,MMETSP0905 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00580 Thalassiosira_gravida CCMP3363 Thalassiosira gravida Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Thalassiosira;Thalassiosira gravida;strain CCMP-3363 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0492,MMETSP0493,MMETSP0494 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00581 Thalassiosira_minuscula CCMP1093 Thalassiosira_miniscula Thalassiosira minuscula Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Thalassiosira;Thalassiosira minuscula;strain CCMP-1093 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0737,MMETSP0738,MMETSP0739,MMETSP0740 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00582 Thalassiosira_oceanica CCMP1005 Thalassiosira oceanica Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Thalassiosira;Thalassiosira oceanica;strain CCMP-1005 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/296/195/GCA_000296195.2_ThaOc_1.0/GCA_000296195.2_ThaOc_1.0_protein.faa.gz ThaOc_1.0 10.1186/gb-2012-13-7-r66 none genome EP00583 Thalassiosira_pseudonana CCMP1335 Thalassiosira pseudonana Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Thalassiosira;Thalassiosira pseudonana;strain CCMP-1335 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/405/GCF_000149405.2_ASM14940v2/GCF_000149405.2_ASM14940v2_protein.faa.gz ASM14940v2 10.1126/science.1101156 none genome EP00584 Thalassiosira_punctigera Tpunct2005C2 Thalassiosira punctigera Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Thalassiosira;Thalassiosira punctigera;strain Tpunct2005C2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1067 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00585 Thalassiosira_rotula GSO102 Thalassiosira rotula Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Mediophyceae;Thalassiosirophycidae;Thalassiosira;Thalassiosira rotula;strain GSO102 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0910,MMETSP0911,MMETSP0912,MMETSP0913 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00586 Coscinodiscus_wailesii CCMP2513 Coscinodiscus wailesii Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Coscinodiscophytina;Coscinodiscus;Coscinodiscus wailesii;strain CCMP-2513 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1066 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00587 Corethron_hystrix CCMP308 Corethron hystrix Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Leptocylindrophytina;Corethrophyceae;Corethron;Corethron hystrix;strain CCMP-308 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0010 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00588 Corethron_pennatum L29A3 Corethron pennatum Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Leptocylindrophytina;Corethrophyceae;Corethron;Corethron pennatum;strain L29A3 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0169,MMETSP0171 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00589 Leptocylindrus_danicus B650,B651,CCMP1856 Leptocylindrus danicus Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Leptocylindrophytina;Leptocylindrophyceae;Leptocylindrus;Leptocylindrus danicus yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0321,MMETSP0322,MMETSP1362 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00590 Aulacoseira_subarctica CCAP 1002/5 Aulacoseira subarctica Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Melosirophytina;Aulacoseira;Aulacoseira subarctica;strain CCAP-1002/5 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1064 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00591 Stephanopyxis_turris CCMP815 Stephanopyxis turris Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Melosirophytina;Stephanopyxis;Stephanopyxis turris;strain CCMP-815 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0794 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00592 Proboscia_alata PI-D3 Proboscia alata Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Probosciophytina;Proboscia;Proboscia alata;strain PI-D3 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0174,MMETSP0176 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00593 Proboscia_inermis CCAP 1064/1 Proboscia inermis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Probosciophytina;Proboscia;Proboscia inermis;strain CCAP-1064/1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0816 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00594 Rhizosolenia_setigera CCMP1694 Rhizosolenia setigera Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Rhizosoleniophytina;Rhizosolenia;Rhizosolenia setigera;strain CCMP-1694 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0789 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00595 Chromulina_nebulosa UTEXLB2642 Chromulina nebulosa Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Chromulinales;Chromulina;Chromulina nebulosa;strain UTEX-LB-2642 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1095 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00596 Hydrurales_sp_CCMP1899 CCMP1899 Ochromonas_sp N/A N/A Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Hydrurales;strain CCMP-1899 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1177 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00597 Dinobryon_sp_UTEXLB2267 UTEXLB2267 Dinobryon N/A Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Ochromonadales;Dinobryon;strain UTEX-LB-2267 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0019,MMETSP0020,MMETSP0812 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00598 Pedospumella_elongata CCAP 955/1 Spumella_elongata Pedospumella elongata Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Ochromonadales;Pedospumella;Pedospumella elongata;strain CCAP-955/1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1098 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00599 Poterioochromonas_sp_BG-1 BG-1 Poterioochromonas N/A Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Ochromonadales;Poterioochromonas;strain BG-1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1105 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00600 Ochromonadales_sp_CCMP1393 CCMP1393 N/A N/A Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Ochromonadales;strain CCMP-1393 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0004,MMETSP0005 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00601 Ochromonadales_sp_CCMP2298 CCMP2298 N/A N/A Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Ochromonadales;strain CCMP-2298 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1141,MMETSP1142,MMETSP1143,MMETSP1144 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00602 Paraphysomonas_bandaiensis Caron Lab Isolate Paraphysomonas bandaiensis Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Paraphysomonadida;Paraphysomonas;Paraphysomonas bandaiensis;strain js007 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1103 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00603 Paraphysomonas_imperforata PA2 Paraphysomonas imperforata Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Paraphysomonadida;Paraphysomonas;Paraphysomonas imperforata;strain PA2 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0103,MMETSP0104 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00604 Paraphysomonas_vestita GFlagA Paraphysomonas vestita Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Paraphysomonadida;Paraphysomonas;Paraphysomonas vestita;strain GFlagA no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1107 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00605 Chrysophyceae_sp_TOSAG23-4 TOSAG23-4 N/A N/A Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;strain TOSAG23-4 no http://www.genoscope.cns.fr/tara/ TOSAG23-4 10.1038/s41467-017-02235-3 none single-cell genome EP00606 Chrysophyceae_sp_TOSAG23-5 TOSAG23-5 N/A N/A Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;strain TOSAG23-5 no http://www.genoscope.cns.fr/tara/ TOSAG23-5 10.1038/s41467-017-02235-3 none single-cell genome EP00607 Mallomonas_sp_CCMP3275 CCMP3275 Mallomonas N/A Stramenopiles Chrysophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Chrysophyceae;Synurales;Mallomonas;strain CCMP-3275 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1167 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00608 Synchroma_pusillum CCMP3072 Synchroma pusillum Stramenopiles other_ochrophytes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"CS clade";Synchromophyceae;"synchromids";Synchroma;Synchroma pusillum;strain CCMP-3072 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1452 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00609 Ectocarpus_siliculosus Ec 32 Ectocarpus siliculosus Stramenopiles Phaeophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"PX clade";Phaeophyceae;Fucophycidae;Ectocarpales;Ectocarpus;Ectocarpus siliculosus;strain Ec32 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/310/025/GCA_000310025.1_ASM31002v1/GCA_000310025.1_ASM31002v1_protein.faa.gz ASM31002v1 10.1038/nature09016 none genome EP00610 Laminaria_digitata N/A Laminaria digitata Stramenopiles Phaeophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"PX clade";Phaeophyceae;Fucophycidae;Laminariales;Laminaria;Laminaria digitata no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR4149283,https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR4159455 Ldigitata_control,Ldigitata_grazed 10.1371/journal.pone.0173315 assemble mRNA,translate mRNA (min length 50) transcriptome EP00611 Tribonema_gayanum 20 CALU Tribonema gayanum Stramenopiles Xanthophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"PX clade";Xanthophyceae;"tribonemataleans";Tribonema;Tribonema gayanum;strain 20-CALU no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR7470091 Transcriptomic data of uninfected Tribonema gayanum culture with bacteria 10.1038/s42003-018-0235-z assemble mRNA,translate mRNA transcriptome EP00612 Vaucheria_litorea CCMP2940 Vaucheria litorea Stramenopiles Xanthophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"PX clade";Xanthophyceae;Vaucheria;Vaucheria litorea;strain CCMP-2940 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0945,MMETSP0946 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00613 Pedinella_sp_CCMP2098 CCMP2098 Pedinella N/A Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;"PCR clade";Pedinellales;Pedinella;strain CCMP-2098 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0990,MMETSP0991,MMETSP0992,MMETSP0993 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00614 Pseudopedinella_elastica CCMP716 Pseudopedinella elastica Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;"PCR clade";Pedinellales;Pseudopedinella;Pseudopedinella elastica;strain CCMP-716 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1068,MMETSP1097 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00615 Pteridomonas_danica PT Pteridomonas danica Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;"PCR clade";Pedinellales;Pteridomonas;Pteridomonas danica;strain PT no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0101,MMETSP0102 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00616 Rhizochromulina_sp_CCMP1243 CCMP1243 Rhizochromulina_marina Rhizochromulina N/A Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;"PCR clade";Rhizochromulinales;Rhizochromulina;strain CCMP-1243 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1173 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00617 Octactis_speculum CCMP1381 Dictyocha_speculum Octactis speculum Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;Dictyochales;Octactis;Octactis speculum;strain CCMP-1381 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1174 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00618 Florenciella_parvula CCMP2471 Florenciella parvula Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;Florenciellales;Florenciella;Florenciella parvula;strain CCMP-2471 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1344 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00619 Florenciella_sp_RCC1007 RCC1007 Florenciella N/A Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;Florenciellales;Florenciella;strain RCC-1007 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1325 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00620 Florenciella_sp_RCC1587 RCC1587 Florenciella N/A Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;Florenciellales;Florenciella;strain RCC-1587 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1324 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00621 Florenciella_sp_RCC1693 RCC1693 Florenciella N/A Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;Florenciellales;Florenciella;strain RCC-1693 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1323 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00622 Pseudochattonella_farcimen UIO109 Pseudochattonella farcimen Stramenopiles Dictyochophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Dictyochophyceae;Florenciellales;Pseudochattonella;Pseudochattonella farcimen;strain UIO109 no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=222761 LIBEST_026955 10.1016/j.protis.2011.07.004 trimseq,translate mRNA,CD-HIT EST EP00623 Microchloropsis_gaditana CCMP526 Nannochloropsis_gaditana Microchloropsis gaditana Stramenopiles Eustigmatophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Eustigmatophyceae;Eustigmatales;Monodopsidaceae;Microchloropsis;Microchloropsis gaditana;strain CCMP-526 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/240/725/GCF_000240725.1_ASM24072v1/GCF_000240725.1_ASM24072v1_protein.faa.gz ASM24072v1 10.1038/ncomms1688 none genome EP00624 Nannochloropsis_granulata CCMP529 Nannochloropsis granulata Stramenopiles Eustigmatophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Eustigmatophyceae;Eustigmatales;Monodopsidaceae;Nannochloropsis;Nannochloropsis granulata;strain CCMP-529 no http://www.bioenergychina.org/fg/d.wang_genomes/ 529-whole-protein 10.1371/journal.pgen.1004094 none genome EP00625 Aureococcus_anophagefferens CCMP1984 Aureococcus anophagefferens Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Pelagomonadales;Aureococcus;Aureococcus anophagefferens;strain CCMP-1984 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/186/865/GCF_000186865.1_v_1.0/GCF_000186865.1_v_1.0_protein.faa.gz v1.0 10.1073/pnas.1016106108 none genome EP00626 Pelagococcus_subviridis CCMP1429 Pelagococcus subviridis Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Pelagomonadales;Pelagococcus;Pelagococcus subviridis;strain CCMP-1429 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0882,MMETSP0883,MMETSP0884,MMETSP0885 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00627 Pelagomonas_calceolata CCMP1756 Pelagomonas calceolata Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Pelagomonadales;Pelagomonas;Pelagomonas calceolata;strain CCMP-1756 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0886,MMETSP0887,MMETSP0888,MMETSP0889 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00628 Pelagophyceae_sp_CCMP2097 CCMP2097 N/A N/A Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Pelagomonadales;strain CCMP-2097 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0974,MMETSP0975,MMETSP0976,MMETSP0977 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00629 Pelagomonadales_sp_RCC1024 RCC1024 N/A N/A Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Pelagomonadales;strain RCC-1024 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1329 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00630 Chrysocystis_fragilis CCMP3189 Chrysocystis fragilis Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Sarcinochrysidales;Chrysocystaceae;Chrysocystis;Chrysocystis fragilis;strain CCMP-3189 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1165 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00631 Chrysoreinhardia_giraudii CCMP770 Sarcinochrysis_sp Chrysoreinhardia giraudii Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Sarcinochrysidales;Chrysocystaceae;Chrysoreinhardia;Chrysoreinhardia giraudii;strain CCMP-770 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1170 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00632 Arachnochrysis_sp_CCMP2950 CCMP2950 Chrysoreinhardia_sp Arachnochrysis N/A Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Sarcinochrysidales;Sarcinochrysidaceae;Arachnochrysis;strain CCMP-2950 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1164 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00633 Aureoumbra_lagunensis CCMP1510 Aureoumbra lagunensis Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Sarcinochrysidales;Sarcinochrysidaceae;Aureoumbra;Aureoumbra lagunensis;strain CCMP-1510 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0890,MMETSP0891,MMETSP0892,MMETSP0893 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00634 Sargassococcus_sp_CCMP2135 CCMP2135 Sargassococcus N/A Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Sarcinochrysidales;Sarcinochrysidaceae;Sargassococcus;strain CCMP-2135 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1467 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00635 Sarcinochrysidales_sp_CCMP3193 CCMP3193 Chrysoreinhardia_sp N/A N/A Stramenopiles Pelagophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pelagophyceae;Sarcinochrysidales;Sarcinochrysidaceae;strain CCMP-3193 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1166 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00636 Phaeomonas_parva CCMP2877 Phaeomonas parva Stramenopiles Pinguiophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pinguiophyceae;Phaeomonas;Phaeomonas parva;strain CCMP-2877 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1163 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00637 Pinguiococcus_pyrenoidosus CCMP2078 Pinguiococcus pyrenoidosus Stramenopiles Pinguiophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Pinguiophyceae;Pinguiococcus;Pinguiococcus pyrenoidosus;strain CCMP-2078 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1160 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00638 Chattonella_subsalsa CCMP2191 Chattonella subsalsa Stramenopiles Raphidophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Raphidophyceae;"core raphidophytes";Chattonellaceae;Chattonella;Chattonella subsalsa;strain CCMP-2191 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0947,MMETSP0948,MMETSP0949,MMETSP0950 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00639 Heterosigma_akashiwo CCMP2393 Heterosigma akashiwo Stramenopiles Raphidophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Raphidophyceae;"core raphidophytes";Chattonellaceae;Heterosigma;Heterosigma akashiwo;strain CCMP-2393 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0292,MMETSP0294,MMETSP0295,MMETSP0296 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00640 Fibrocapsa_japonica CCMP1661 Fibrocapsa japonica Stramenopiles Raphidophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;Raphidophyceae;"core raphidophytes";Fibrocapsa;Fibrocapsa japonica;strain CCMP-1661 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1339 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00641 Albugo_candida Ac2VRR Albugo candida Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Albugo;Albugo candida;strain Ac2VRR no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/078/535/GCA_001078535.1_ASM107853v1/GCA_001078535.1_ASM107853v1_protein.faa.gz ASM107853v1 10.1186/1471-2164-12-503 none genome EP00642 Albugo_laibachii Nc14 Albugo laibachii Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Albugo;Albugo laibachii;strain Nc14 no https://www.ncbi.nlm.nih.gov/bioproject/protein?LinkName=bioproject_protein&from_uid=53219 v4 10.1371/journal.pbio.1001094 none genome EP00643 Hyaloperonospora_arabidopsidis Emoy2 Hyaloperonospora arabidopsidis Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Hyaloperonospora;Hyaloperonospora arabidopsidis;strain Emoy2 no ftp://ftp.ensemblgenomes.org/pub/protists/release-43/fasta/hyaloperonospora_arabidopsidis/pep/Hyaloperonospora_arabidopsidis.HyaAraEmoy2_2.0.pep.all.fa.gz HyaAraEmoy2_2.0 10.1126/science.1195203 none genome EP00644 Phytophthora_capsici LT1534 Phytophthora capsici Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Phytophthora;Phytophthora capsici;strain LT1534 no https://genome.jgi.doe.gov/portal/Phyca11/download/Phyca11_filtered_proteins.fasta.gz Phyca11 10.1094/MPMI-02-12-0028-R none genome EP00645 Phytophthora_infestans T30-4 Phytophthora infestans Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Phytophthora;Phytophthora infestans;strain T30-4 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/142/945/GCF_000142945.1_ASM14294v1/GCF_000142945.1_ASM14294v1_protein.faa.gz ASM14294v1 10.1038/nature08358 none genome EP00646 Phytophthora_ramorum ATCC MYA-2949 Phytophthora ramorum Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Phytophthora;Phytophthora ramorum;strain ATCC-MYA-2949 no ftp://ftp.ensemblgenomes.org/pub/protists/release-43/fasta/phytophthora_ramorum/pep/Phytophthora_ramorum.ASM14973v1.pep.all.fa.gz ASM14973v1 10.1126/science.1128796 none genome EP00647 Phytophthora_sojae P6497 Phytophthora sojae Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Phytophthora;Phytophthora sojae;strain P6497 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/149/755/GCF_000149755.1_P.sojae_V3.0/GCF_000149755.1_P.sojae_V3.0_protein.faa.gz P.sojae V3.0 10.1126/science.1128796 none genome EP00648 Phytopythium_vexans DAOM BR484 Phytopythium vexans Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Phytopythium;Phytopythium vexans;strain DAOM-BR484 no ftp://ftp.ensemblgenomes.org/pub/protists/release-43/fasta/pythium_vexans/pep/Pythium_vexans.pve_scaffolds_v1.pep.all.fa.gz v1 10.1371/journal.pone.0075072 none genome EP00649 Plasmopara_halstedii OS-Ph8-99-BlA4 Plasmopara halstedii Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Plasmopara;Plasmopara halstedii;strain OS-Ph8-99-BlA4 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/000/015/GCF_900000015.1_Plasmopara_halstedii_genome/GCF_900000015.1_Plasmopara_halstedii_genome_protein.faa.gz Plasmopara halstedii genome 10.1186/s12864-015-1904-7 none genome EP00650 Pythium_arrhenomanes ATCC 12531 Pythium arrhenomanes Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Pythium;Pythium arrhenomanes;strain ATCC-12531 no ftp://ftp.ensemblgenomes.org/pub/protists/release-43/fasta/pythium_arrhenomanes/pep/Pythium_arrhenomanes.par_scaffolds_v1.pep.all.fa.gz par_scaffolds_v1 10.1371/journal.pone.0075072 none genome EP00651 Pythium_oligandrum Po37 Pythium oligandrum Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"peronosporaleans";Pythium;Pythium oligandrum;strain Po37 no https://www.ncbi.nlm.nih.gov/genome/43712?genome_assembly_id=312693 P_oligandrum_v1 10.1128/genomeA.00215-16 transeq,CD-HIT genome EP00652 Aphanomyces_astaci Li07 Aphanomyces astaci Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"saprolegnialeans";Aphanomyces;Aphanomyces astaci;strain Li07 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/520/075/GCF_000520075.1_Apha_asta_APO3_V1/GCF_000520075.1_Apha_asta_APO3_V1_protein.faa.gz Apha_asta_APO3_V1 10.1186/s12915-018-0508-5 none genome EP00653 Aphanomyces_invadans 9901 Aphanomyces invadans Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"saprolegnialeans";Aphanomyces;Aphanomyces invadans;strain 9901 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/520/115/GCF_000520115.1_Apha_inva_NJM9701_V1/GCF_000520115.1_Apha_inva_NJM9701_V1_protein.faa.gz Apha_inva_NJM9701_V1 N/A none genome EP00654 Saprolegnia_diclina VS20 Saprolegnia diclina Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"saprolegnialeans";Saprolegnia;Saprolegnia diclina;strain VS20 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/281/045/GCF_000281045.1_Sap_diclina_VS20_V1/GCF_000281045.1_Sap_diclina_VS20_V1_protein.faa.gz Sap_diclina_VS20_V1 N/A none genome EP00655 Saprolegnia_parasitica CBS 223.65 Saprolegnia parasitica Stramenopiles Peronosporomycetes Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Peronosporomycetes;"core oomycetes";"PS clade";"saprolegnialeans";Saprolegnia;Saprolegnia parasitica;strain CBS-223.65 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/151/545/GCF_000151545.1_ASM15154v2/GCF_000151545.1_ASM15154v2_protein.faa.gz ASM15154v2 10.1371/journal.pgen.1003272 none genome EP00656 Telonema_subtile Tel-1 Telonema subtile Telonemia Telonemia Eukaryota;Diaphoretickes;Telonemia;Telonema;"Tsubtile clade";Telonema subtile;strain Tel-1 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR7371267 Telonema subtile:mixed culture with Procryptobia 10.1093/molbev/msz012 assemble mRNA,translate mRNA transcriptome EP00657 Telonema_sp_P-1 P-1 Telonema N/A Telonemia Telonemia Eukaryota;Diaphoretickes;Telonemia;Telonema;strain P-1 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR7371268 Telonemida (P-1):mixed cuture with Procryptobia 10.1093/molbev/msz012 assemble mRNA,translate mRNA transcriptome EP00658 Telonema_sp_P-2 P-2 Telonema N/A Telonemia Telonemia Eukaryota;Diaphoretickes;Telonemia;Telonema;strain P-2 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR7371266 Telonemida (P-2):mixed culture with Procryptobia 10.1093/molbev/msz012 assemble mRNA,translate mRNA transcriptome EP00659 Diplonema_papillatum ATCC 50162 Diplonema papillatum Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Diplonemidae;Diplonema;Diplonema papillatum;strain ATCC-50162 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/655/075/GCA_001655075.1_ASM165507v1/GCA_001655075.1_ASM165507v1_genomic.fna.gz ASM165507v1 10.1098/rspb.2016.0520 translated sequence search genome EP00660 Eupelagonema_oceanica cell37 Eupelagonema_pacifica Eupelagonema oceanica Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Eupelagonemidae;Eupelagonema;Eupelagonema oceanica;strain cell37 no https://doi.org/10.5061/dryad.d19j0 cell_37_SPAdes-scaffolds.final 10.1016/j.cub.2016.09.013 translated sequence search single-cell genome EP00661 Diplonemea_sp_cell13 cell13 N/A N/A Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Eupelagonemidae;strain cell13 no https://doi.org/10.5061/dryad.d19j0 cell_13_SPAdes-scaffolds.final 10.1016/j.cub.2016.09.013 translated sequence search single-cell genome EP00662 Diplonemea_sp_cell21 cell21 N/A N/A Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Eupelagonemidae;strain cell21 no https://doi.org/10.5061/dryad.d19j0 cell_21_SPAdes-scaffolds.final 10.1016/j.cub.2016.09.013 translated sequence search single-cell genome EP00663 Diplonemea_sp_cell21sb cell21sb N/A N/A Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Eupelagonemidae;strain cell21sb no https://doi.org/10.5061/dryad.d19j0 cell_21sb_SPAdes-scaffolds.final 10.1016/j.cub.2016.09.013 translated sequence search single-cell genome EP00664 Diplonemea_sp_cell27 cell27 N/A N/A Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Eupelagonemidae;strain cell27 no https://doi.org/10.5061/dryad.d19j0 cell_27_SPAdes-scaffolds.final 10.1016/j.cub.2016.09.013 translated sequence search single-cell genome EP00665 Diplonemea_sp_cell47 cell47 N/A N/A Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Eupelagonemidae;strain cell47 no https://doi.org/10.5061/dryad.d19j0 cell_47_SPAdes-scaffolds.final 10.1016/j.cub.2016.09.013 translated sequence search single-cell genome EP00666 Diplonemea_sp_cell4sb cell4sb N/A N/A Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Eupelagonemidae;strain cell4sb no https://doi.org/10.5061/dryad.d19j0 cell_4sb_SPAdes-scaffolds.final 10.1016/j.cub.2016.09.013 translated sequence search single-cell genome EP00667 Euglena_gracilis Z1 Euglena gracilis Euglenozoa Euglenophycidae Eukaryota;Discoba;Euglenozoa;Euglenida;Spirocuta;Euglenea;Euglenophycidae;Euglenales;Euglenaceae;Euglena;Euglena gracilis;strain Z1 no ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2019/01/PXD009998/Euglena_translated_transcriptome.fasta translated_transcriptome 10.1007/978-3-319-54910-1_7 none genome EP00668 Euglena_longa CCAP 1204-17a Euglena longa Euglenozoa Euglenophycidae Eukaryota;Discoba;Euglenozoa;Euglenida;Spirocuta;Euglenea;Euglenophycidae;Euglenales;Euglenaceae;Euglena;Euglena longa;strain CCAP-1204/17a no ftp://ftp.ncbi.nlm.nih.gov/sra/wgs_aux/GG/OE/GGOE01/GGOE01.1.fsa_nt.gz GGOE01000000 10.1038/s41598-018-35389-1 translate mRNA transcriptome EP00669 Euglena_mutabilis AMD of Carnoulès Euglena mutabilis Euglenozoa Euglenophycidae Eukaryota;Discoba;Euglenozoa;Euglenida;Spirocuta;Euglenea;Euglenophycidae;Euglenales;Euglenaceae;Euglena;Euglena mutabilis;strain AMD-Carnoulès no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR351290,https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR351289,https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR351288,https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR351287,https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR351286,https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=ERR351285 Population Genomics of Euglena mutabilis 10.1111/1462-2920.12474 assemble mRNA,translate mRNA transcriptome EP00670 Eutreptiella_gymnastica CCMP1594 Eutreptiella gymnastica Euglenozoa Euglenophycidae Eukaryota;Discoba;Euglenozoa;Euglenida;Spirocuta;Euglenea;Euglenophycidae;Eutreptiales;Eutreptiella;Eutreptiella gymnastica;strain CCMP-1594 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0809,MMETSP0810,MMETSP0811 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00671 Bodo_saltans Konstans Bodo saltans Euglenozoa other_kinetoplasts Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Eubodonida;Bodo;Bodo saltans;strain Konstans no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/460/835/GCA_001460835.1_BSAL/GCA_001460835.1_BSAL_protein.faa.gz BSAL 10.1016/j.cub.2015.11.055 none genome EP00672 Neobodo_designis CCAP 1951/1 "Neobodo" designis Euglenozoa other_kinetoplasts Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Neobodonida;"neobodonids 1C";Neobodo designis;strain CCAP-1951/1 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP1114 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00673 Leishmania_infantum JPCM5 Leishmania infantum Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Leishmaniinae;Leishmania;Leishmania infantum;strain JPCM5 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/875/GCF_000002875.2_ASM287v2/GCF_000002875.2_ASM287v2_protein.faa.gz ASM287v2 10.1038/ng2053,10.1038/s41598-017-18374-y none genome EP00674 Leishmania_major Friedlin Leishmania major Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Leishmaniinae;Leishmania;Leishmania major;strain Friedlin no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/725/GCF_000002725.2_ASM272v2/GCF_000002725.2_ASM272v2_protein.faa.gz ASM272v2 10.1126/science.1112680 none genome EP00675 Leptomonas_pyrrhocoris H10 Leptomonas pyrrhocoris Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Leishmaniinae;Leptomonas;Leptomonas pyrrhocoris;strain H10 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/293/395/GCF_001293395.1_ASM129339v1/GCF_001293395.1_ASM129339v1_protein.faa.gz ASM129339v1 10.1038/srep23704 none genome EP00676 Leptomonas_seymouri ATCC 30220 Leptomonas seymouri Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Leishmaniinae;Leptomonas;Leptomonas seymouri;strain ATCC-30220 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/299/535/GCA_001299535.1_ASM129953v1/GCA_001299535.1_ASM129953v1_protein.faa.gz ASM129953v1 10.1371/journal.ppat.1005127 none genome EP00677 Phytomonas_sp_EM1 EM1 Phytomonas N/A Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Phytomonas;strain EM1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/582/765/GCA_000582765.1_AKH_PRJEB1535_v1/GCA_000582765.1_AKH_PRJEB1535_v1_protein.faa.gz AKH_PRJEB1535_v1 10.1371/journal.pgen.1004007 none genome EP00678 Phytomonas_sp_Hart1 Hart1 Phytomonas N/A Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Phytomonas;strain Hart1 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/982/615/GCA_000982615.1_AKI_PRJEB1539_v1/GCA_000982615.1_AKI_PRJEB1539_v1_protein.faa.gz AKI_PRJEB1539_v1 10.1371/journal.pgen.1004007 none genome EP00679 Angomonas_deanei ATCC 30255 Angomonas deanei Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Strigomonadinae;Angomonas;Angomonas deanei;strain ATCC-30255 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/575/GCA_000442575.2_Angomonas_deanei_Genome/GCA_000442575.2_Angomonas_deanei_Genome_protein.faa.gz Angomonas_deanei_Genome 10.1371/journal.pone.0060209 none genome EP00680 Strigomonas_culicis ATCC 30268 Strigomonas culicis Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Strigomonadinae;Strigomonas;Strigomonas culicis;strain ATCC-30268 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/442/495/GCA_000442495.1_Strigomonas_culicis_Genome/GCA_000442495.1_Strigomonas_culicis_Genome_protein.faa.gz Strigomonas_culicis_Genome 10.1371/journal.pone.0060209 none genome EP00681 Trypanosoma_brucei DAL972 Trypanosoma brucei Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Trypanosoma;Trypanosoma brucei;strain DAL972 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/210/295/GCF_000210295.1_ASM21029v1/GCF_000210295.1_ASM21029v1_protein.faa.gz ASM21029v1 10.1371/journal.pntd.0000658 none genome EP00682 Trypanosoma_cruzi CL-Brener Trypanosoma cruzi Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Trypanosoma;Trypanosoma cruzi;strain CL-Brener no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/209/065/GCF_000209065.1_ASM20906v1/GCF_000209065.1_ASM20906v1_protein.faa.gz ASM20906v1 10.1126/science.1112631 none genome EP00683 Trypanosoma_rangeli SC-58 Trypanosoma rangeli Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Trypanosoma;Trypanosoma rangeli;strain SC-58 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/003/719/475/GCA_003719475.1_ASM371947v1/GCA_003719475.1_ASM371947v1_protein.faa.gz ASM371947v1 10.1371/journal.pntd.0003176 none genome EP00684 Trypanosoma_vivax Y486 Trypanosoma vivax Euglenozoa Trypanosomatida Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Trypanosomatida;"core tryps";Trypanosoma;Trypanosoma vivax;strain Y486 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/227/375/GCA_000227375.1_ASM22737v1/GCA_000227375.1_ASM22737v1_protein.faa.gz ASM22737v1 10.1073/pnas.1117313109 none genome EP00685 Perkinsela_sp_CCAP1560-4 CCAP 1560/4 Perkinsela N/A Euglenozoa other_kinetoplasts Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Prokinetoplastina;Perkinsela;strain Ppemaquidensis-CCAP-1560/4 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/235/845/GCA_001235845.1_ASM123584v1/GCA_001235845.1_ASM123584v1_protein.faa.gz ASM123584v1 10.1038/s41598-017-11866-x none genome EP00686 Naegleria_gruberi ATCC 30224 Naegleria gruberi Heterolobosea Heterolobosea Eukaryota;Discoba;Heterolobosea;Tetramitia;Eutetramitia;"MNT clade";"NW lineage";Naegleria;Naegleria gruberi;strain ATCC-30224 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/004/985/GCF_000004985.1_V1.0/GCF_000004985.1_V1.0_protein.faa.gz V1.0 10.1016/j.cell.2010.01.032 none genome EP00687 Percolomonas_cosmopolitus ATCC 50343,WS Percolomonas "cosmopolitus" Heterolobosea Heterolobosea Eukaryota;Discoba;Heterolobosea;Tetramitia;Eutetramitia;"PS lineage";Percolomonas yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0758,MMETSP0759 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00688 Stachyamoeba_lipophora N/A Stachyamoeba lipophora Heterolobosea Heterolobosea Eukaryota;Discoba;Heterolobosea;Tetramitia;Eutetramitia;Gruberellidae;Stachyamoeba;Stachyamoeba lipophora no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=153403 LIBEST_021742 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00689 Sawyeria_marylandensis ATCC 50653 Sawyeria marylandensis Heterolobosea Heterolobosea Eukaryota;Discoba;Heterolobosea;Tetramitia;Eutetramitia;Psalteriomonadidae;Sawyeria;Sawyeria marylandensis;strain ATCC-50653 no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150551 LIBEST_019959 10.1128/EC.00122-10 trimseq,translate mRNA (min length 50),CD-HIT EST EP00690 Seculamonas_sp_ecuadoriensis N/A "Seculamonas" "ecuadoriensis" Jakobida Jakobida Eukaryota;Discoba;Jakobida;Histionina;"Seculamonas";"Seculamonas ecuadoriensis" no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150550 LIBEST_019958 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00691 Histiona_aroides N/A Histiona aroides Jakobida Jakobida Eukaryota;Discoba;Jakobida;Histionina;Histiona;Histiona aroides no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150562 LIBEST_019970 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00692 Jakoba_bahamiensis N/A Jakoba bahamiensis Jakobida Jakobida Eukaryota;Discoba;Jakobida;Histionina;Jakoba;Jakoba bahamiensis no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150510 LIBEST_019913 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00693 Jakoba_libera N/A Jakoba libera Jakobida Jakobida Eukaryota;Discoba;Jakobida;Histionina;Jakoba;Jakoba libera no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150512 LIBEST_019915 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00694 Reclinomonas_americana N/A Reclinomonas americana Jakobida Jakobida Eukaryota;Discoba;Jakobida;Histionina;Reclinomonas;Reclinomonas americana no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150540,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150541,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150542,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150543,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150544,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150545,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150546 LIBEST_019948,LIBEST_019949,LIBEST_019950,LIBEST_019951,LIBEST_019952,LIBEST_019953,LIBEST_019954 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00695 Tsukubamonas_globosa NIES‐1390 Tsukubamonas globosa Tsukubamonadida Tsukubamonadida Eukaryota;Discoba;Tsukubamonadida;Tsukubamonas;Tsukubamonas globosa;strain NIES‐1390 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=DRR014073 454 sequencing of Tsukubamonas globosa 10.1093/gbe/evu015 assemble mRNA,translate mRNA (min length 50) transcriptome EP00696 Hemimastix_kukwesjijk BW2H Hemimastix kukwesjijk Hemimastigophora Hemimastigophora Eukaryota;Hemimastigophora;Spironemidae;Hemimastix;Hemimastix kukwesjijk;strain BW2H no https://doi.org/10.5061/dryad.n5g39d7/4 July2016 10.1038/s41586-018-0708-8 translate mRNA single-cell transcriptome EP00697 Spironema_sp_BW2 BW2 Spironema N/A Hemimastigophora Hemimastigophora Eukaryota;Hemimastigophora;Spironemidae;Spironema;strain BW2 no https://doi.org/10.5061/dryad.n5g39d7/4 July2016 10.1038/s41586-018-0708-8 translate mRNA single-cell transcriptome EP00698 Gefionella_okellyi 249 Gefionella okellyi Malawimonadidae Malawimonadidae Eukaryota;Malawimonadidae;Gefionella;Gefionella okellyi;strain 249 no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR5996795 Gefionella okellyi (strain 249) Transcriptome 10.1098/rsos.171707 assemble mRNA,translate mRNA transcriptome EP00699 Malawimonas_sp_californiana N/A Malawimonas "californiana" Malawimonadidae Malawimonadidae Eukaryota;Malawimonadidae;Malawimonas;"Malawimonas californiana" no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150517,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150518,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150519,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150520 LIBEST_019920,LIBEST_019921,LIBEST_019922,LIBEST_019923 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00700 Malawimonas_jakobiformis N/A Malawimonas jakobiformis Malawimonadidae Malawimonadidae Eukaryota;Malawimonadidae;Malawimonas;Malawimonas jakobiformis no https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150521,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150522 LIBEST_019924,LIBEST_019925 10.1016/j.cub.2007.07.036 trimseq,translate mRNA (min length 50),CD-HIT EST EP00701 Giardia_intestinalis ATCC 50803 Giardia intestinalis Fornicata Diplomonadida Eukaryota;Metamonada;"BF clade";Fornicata;"DR group";Diplomonadida;Giardiinae;Giardia;Giardia intestinalis;strain ATCC-50803 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/435/GCF_000002435.1_GL2/GCF_000002435.1_GL2_protein.faa.gz GL2 10.1126/science.1143837 none genome EP00702 Spironucleus_salmonicida ATCC 50377 "Spironucleus" salmonicida Fornicata Diplomonadida Eukaryota;Metamonada;"BF clade";Fornicata;"DR group";Diplomonadida;Hexamitinae;"Storosa clade";Spironucleus salmonicida;strain ATCC-50377 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/497/125/GCA_000497125.1_SSK3.0/GCA_000497125.1_SSK3.0_protein.faa.gz SSK3.0 10.1371/journal.pgen.1004053 none genome EP00703 Trepomonas_sp_PC1 PC1 Trepomonas N/A Fornicata Diplomonadida Eukaryota;Metamonada;"BF clade";Fornicata;"DR group";Diplomonadida;Hexamitinae;Trepomonas;strain PC1 no https://www.ncbi.nlm.nih.gov/bioproject/protein?LinkName=bioproject_protein&from_uid=288252 GDID01000000 10.1186/s12915-016-0284-z none transcriptome EP00704 Kipferlia_bialata NY0173 Kipferlia bialata Fornicata other_Fornicata Eukaryota;Metamonada;"BF clade";Fornicata;Kipferlia;Kipferlia bialata;strain NY0173 no https://drive.google.com/drive/folders/1urQkvKazCDQCNoyIxKccClsFsjfRrRGF genomeproteins 10.1371/journal.pone.0194487 none genome EP00705 Trichomonas_vaginalis G3 Trichomonas vaginalis Parabasalia Parabasalia Eukaryota;Metamonada;Parabasalia;Trichomonadida;Trichomonas;Trichomonas vaginalis;strain G3 no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/002/825/GCF_000002825.2_ASM282v1/GCF_000002825.2_ASM282v1_protein.faa.gz ASM282v1 10.1126/science.1132894 none genome EP00706 Tritrichomonas_foetus K Tritrichomonas foetus Parabasalia Parabasalia Eukaryota;Metamonada;Parabasalia;Tritrichomonas;Tritrichomonas foetus;strain K no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/001/839/685/GCA_001839685.1_ASM183968v1/GCA_001839685.1_ASM183968v1_protein.faa.gz ASM183968v1 10.1128/genomeA.00195-17 none genome EP00708 Paratrimastix_pyriformis ATCC 50935 Paratrimastix pyriformis Preaxostyla trimastigids Eukaryota;Metamonada;Preaxostyla;Paratrimastigidae;Paratrimastix;Paratrimastix pyriformis;strain ATCC-50935 no https://www.ncbi.nlm.nih.gov/bioproject?LinkName=bioproject_nuccore_transcript&from_uid=185488,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150554,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150555,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150556,https://www.ncbi.nlm.nih.gov/nuccore?LinkName=biosample_nuccore&from_uid=150557 GAFH01000000,LIBEST_019962,LIBEST_019963,LIBEST_019964,LIBEST_019965 10.1371/journal.pone.0055417 trimseq,translate mRNA (min length 50),CD-HIT transcriptome,EST EP00727 Mastigamoeba_balamuthi ATCC 30984 EP00018 "Mastigamoeba" balamuthi Amoebozoa Mastigamoebida Eukaryota;Amorphea;Amoebozoa;Evosea;Archamoebea;Mastigamoebida;"mastigamoebids A";Mastigamoeba balamuthi;strain ATCC-30984 no https://bioinformatics.psb.ugent.be/gdb/mastigamoeba/Masba_prot_LATEST.tfa.gz m51a1 10.1073/pnas.1219590110 none genome Genome, replaces EP00018 which was transcriptome EP00728 Arcella_intermedia University of São Paulo in 2013 Arcella intermedia Amoebozoa Arcellinida Eukaryota;Amorphea;Amoebozoa;Tubulinea;Elardia;Arcellinida;"core arcellinids";Sphaerothecina;Arcella;Arcella intermedia;strain São-Paulo-2013 no https://sra-download.ncbi.nlm.nih.gov/traces/wgs01/wgs_aux/GI/BP/GIBP01/GIBP01P.1.fsa_aa.gz GIBP00000000 10.1111/jeu.12788-5297 none transcriptome EP00729 Bicosta_minor 4_SAGs Bicosta minor Choanoflagellata Acanthoecida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Acanthoecida;Stephanoecidae;"Aunguiculata clade";Bicosta;Bicosta minor no https://figshare.com/articles/4_well_Bicosta_minor_draft_assembly/8868596 B.minor.tetranucleotide.filtered.Choano-contigs.fa 10.1073/pnas.1907517116 translated sequence search single-cell genome EP00730 Choanoeca_flexa N/A Choanoeca flexa Choanoflagellata Craspedida Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Choanoflagellata;Craspedida;"Monosiga lineage";Choanoeca;Choanoeca flexa no https://doi.org/10.6084/m9.figshare.8216291 Version 2 10.1101/661009 none transcriptome EP00731 Ephydatia_muelleri RBCM019-00140-001 Ephydatia muelleri Metazoa Porifera Eukaryota;Amorphea;Obazoa;Opisthokonta;Holozoa;Choanozoa;Metazoa;Porifera;"DemHex clade";Demospongiae;Heteroscleromorpha;Spongillida;Ephydatia;Ephydatia muelleri;isolate RBCM019-00140-001 no https://bitbucket.org/EphydatiaGenome/ephydatiagenome/downloads/Emu_v1_prots.fasta.gz v1 10.1101/2020.02.18.954784 none genome EP00732 Lithocolla_globosa MK547176-SnP Lithocolla globosa Rotosphaerida Rotosphaerida Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Rotosphaerida;"LP clade";Lithocolla;Lithocolla globosa;strain SnP no https://figshare.com/articles/Rotosphaerida_datasets_and_trees/7814411 cleaned_NUC 10.1098/rstb.2019.0094 none transcriptome EP00733 Pompholyxophrys_punicea MK547175-LG129 Pompholyxophrys punicea Rotosphaerida Rotosphaerida Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Rotosphaerida;"LP clade";Pompholyxophrys;Pompholyxophrys punicea;strain LG129 no https://figshare.com/articles/Rotosphaerida_datasets_and_trees/7814411 cleaned 10.1098/rstb.2019.0094 none single-cell transcriptome EP00734 Pompholyxophrys_sp_MK547174-LG126 MK547174-LG126 Pompholyxophrys N/A Rotosphaerida Rotosphaerida Eukaryota;Amorphea;Obazoa;Opisthokonta;Nucletmycea;Rotosphaerida;"LP clade";Pompholyxophrys;strain LG126 no https://figshare.com/articles/Rotosphaerida_datasets_and_trees/7814411 cleaned 10.1098/rstb.2019.0094 none single-cell transcriptome EP00735 Rhodelphis_limneticus Colp-38 Rhodelphis limneticus Rhodelphis Rhodelphis Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodelphis;Rhodelphis limneticus;strain Colp-38 no https://datadryad.org/stash/downloads/file_stream/107359 Culture/R_limneticus_prot_cdhit95 10.1038/s41586-019-1398-6 none transcriptome EP00736 Rhodelphis_marinus Colp-29 Rhodelphis marinus Rhodelphis Rhodelphis Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodelphis;Rhodelphis marinus;strain Colp-29 no https://datadryad.org/stash/downloads/file_stream/107360 R_marinus_cdhit95_protein 10.1038/s41586-019-1398-6 none transcriptome EP00737 Agarophyton_chilense San Vicente Agarophyton chilense Rhodophyta Florideophyceae Eukaryota;Diaphoretickes;Archaeplastida;"RR clade";Rhodophyta;Eurhodophytina;Florideophyceae;Rhodymeniophycidae;Gracilariales;Gracilariaceae;Agarophyton;Agarophyton chilense;strain San Vicente no https://sra-download.ncbi.nlm.nih.gov/traces/wgs03/wgs_aux/GE/ZJ/GEZJ01/GEZJ01.1.fsa_nt.gz GEZJ01000000 10.1016/j.margen.2016.11.001 translate mRNA transcriptome EP00738 Chloropicon_primus CCMP1205 EP00214 Chloropicon primus Chloroplastida Chloropicophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Chloropicophyceae;Chloropicon;Chloropicon primus;strain CCMP-1205 no https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/007/859/695/GCA_007859695.1_ASM785969v1/GCA_007859695.1_ASM785969v1_protein.faa.gz ASM785969v1 10.1038/s41467-019-12014-x none genome Genome, replaces EP00214 which was transcriptome EP00739 Bathycoccus_prasinos BCC99000,CCMP1898,RCC716 Ostreococcus_prasinos EP00219,EP00220,EP00221 Bathycoccus prasinos Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Bathycoccaceae;Bathycoccus;Bathycoccus prasinos yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP0933,MMETSP1399,MMETSP1460 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome Identified to species level and three strains of same species now merged (BCC99000,CCMP1898,RCC716) EP00740 Mantoniella_antarctica CCMP1436,SL-175 EP00225,EP00226 Mantoniella antarctica Chloroplastida Mamiellophyceae Eukaryota;Diaphoretickes;Archaeplastida;Chloroplastida;Chlorophyta;Mamiellophyceae;Mamiellales;Mamiellaceae;Mantoniella;Mantoniella antarctica yes https://doi.org/10.6084/m9.figshare.12410606 MMETSP1106,MMETSP1468 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome Identified to species level and two strains of same species now merged (CCMP1436,SL-175) EP00741 Cyanophora_paradoxa CCMP329 EP00273 Cyanophora paradoxa Glaucophyta Glaucophyta Eukaryota;Diaphoretickes;Archaeplastida;Glaucophyta;Cyanophora;Cyanophora paradoxa;strain CCMP-329 no http://cyanophora.rutgers.edu/cyanophora_v2018/Cyanophora-MAY2017-augustus-predictions.fasta v2018 10.1093/dnares/dsz009 none genome Improved annotation relative to previous genome release, replaces EP00273 EP00742 Colponemidia_sp_Colp-10 Colp-10 N/A N/A Alveolata colponemids Eukaryota;Diaphoretickes;Sar;Alveolata;Colponemidae;"MPE2-45 clade";strain Colp-10 no https://sra-download.ncbi.nlm.nih.gov/traces/wgs01/wgs_aux/GI/LJ/GILJ01/GILJ01.1.fsa_nt.gz GILJ01000000 10.1016/j.ympev.2020.106839 translate mRNA transcriptome Propagated on Parabodo caudatus BAS-1 (may be contaminated) EP00743 Colponemidia_sp_Colp-15 Colp-15 N/A N/A Alveolata colponemids Eukaryota;Diaphoretickes;Sar;Alveolata;Colponemidae;"MPE2-45 clade";strain Colp-15 no https://sra-download.ncbi.nlm.nih.gov/traces/wgs01/wgs_aux/GI/LK/GILK01/GILK01.1.fsa_nt.gz GILK01000000 10.1016/j.ympev.2020.106839 translate mRNA transcriptome Propagated on Parabodo caudatus BAS-1 (may be contaminated) EP00744 Colponema_vietnamica Colp-7a Colponema vietnamica Alveolata colponemids Eukaryota;Diaphoretickes;Sar;Alveolata;Colponemidae;Colponema;Colponema vietnamica;strain Colp-7a no https://sra-download.ncbi.nlm.nih.gov/traces/wgs01/wgs_aux/GI/LI/GILI01/GILI01.1.fsa_nt.gz GILI01000000 10.1016/j.ympev.2020.106839 translate mRNA transcriptome Propagated on Parabodo caudatus BAS-1 (may be contaminated) EP00745 Piridium_sociabile N/A Piridium sociabile Alveolata Colpodellida Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"AC clade";Colpodellida;Vitrellaceae;Piridium;Piridium sociabile no https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR8980204,https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR8980205 RNAseq of Piridium sociabile 10.1016/j.cub.2019.07.019 assemble mRNA,translate mRNA transcriptome EP00746 Dinoflagellata_sp_MGD MGD N/A N/A Alveolata other_dinozoans Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;"MGD lineage";strain MGD no https://doi.org/10.5061/dryad.k6djh9w38 v5/MRD_trinity.fasta 10.1073/pnas.1911884117 translate mRNA transcriptome EP00747 Dinoflagellata_sp_TGD TGD N/A N/A Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;"TGD lineage";strain TGD no https://doi.org/10.5061/dryad.k6djh9w38 v5/TRD_trinity.fasta 10.1073/pnas.1911884117 translate mRNA transcriptome EP00748 Akashiwo_sanguinea CCCM885 Akashiwo sanguinea Alveolata Dinophyceae Eukaryota;Diaphoretickes;Sar;Alveolata;Myzozoa;"DP clade";Dinoflagellata;Dinophyceae;Akashiwo;Akashiwo sanguinea;strain CCCM-885 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0223 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 none transcriptome EP00749 Cafeteria_roenbergensis BVI EP00498 Cafeteria roenbergensis Stramenopiles Bicosoecida Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Opalozoa;Bicosoecida;"core bicosoecids";Cafeteria;Cafeteria roenbergensis;strain BVI no https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/330/645/GCA_008330645.1_CrBVI/GCA_008330645.1_CrBVI_protein.faa.gz CrBVI 10.1038/s41597-020-0363-4 none genome Genome, replaces EP00498 which was transcriptome EP00750 Incisomonas_marina CCAP 977/1 Incisomonas marina Stramenopiles Nanomonadea Eukaryota;Diaphoretickes;Sar;Stramenopiles;Bigyra;Opalozoa;Nanomonadea;Incisomonas;Incisomonas marina;strain CCAP-997/1 no https://doi.org/10.6084/m9.figshare.9209831.v1 Imarina.fa 10.1016/j.protis.2019.125682 translate mRNA transcriptome EP00751 Fragilariopsis_kerguelensis L26-C5 Fragilariopsis kerguelensis Stramenopiles Diatomeae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"BD clade";Diatomeae;Bacillariophytina;Bacillariophyceae;Bacillariophycidae;Fragilariopsis;Fragilariopsis kerguelensis;strain L26-C5 no https://doi.org/10.6084/m9.figshare.12410606 MMETSP0733,MMETSP0734,MMETSP0735,MMETSP0736 10.1371/journal.pbio.1001889,10.1093/molbev/msw209 CD-HIT transcriptome EP00752 Nemacystus_decipiens Onna-1 Nemacystus decipiens Stramenopiles Phaeophyceae Eukaryota;Diaphoretickes;Sar;Stramenopiles;Gyrista;Ochrophyta;"PX clade";Phaeophyceae;Fucophycidae;Ectocarpales;Nemacystus;Nemacystus decipiens;strain Onna-1 no https://marinegenomics.oist.jp/ito_mozuku_v1/download/ito_mozuku_onna1_protein_seq.zip Version 1 10.1038/s41598-019-40955-2 none genome EP00753 Platysulcus_tardus NIES-3720 Platysulcus tardus Stramenopiles Platysulcus Eukaryota;Diaphoretickes;Sar;Stramenopiles;Platysulcus;Platysulcus tardus;strain NIES-3720 no https://doi.org/10.6084/m9.figshare.9209831.v1 Ptardus.fa 10.1016/j.protis.2019.125682 translate mRNA transcriptome EP00754 Rhynchopus_humris YPF1608 Rhynchopus humris Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Diplonemidae;Rhynchopus;Rhynchopus humris;strain YPF1608 no https://yadi.sk/mail/?hash=1lyMyRcsSI0p%2BKP2xcca19xt6XCSAzIgMpfOFsJ1Vs%2FFkfoNYBuP%2Bi2N%2FwZzYHFYq%2FJ6bpmRyOJonT3VoXnDag%3D%3D PRJNA550027 10.1186/s12915-020-0754-1 none transcriptome EP00755 Sulcionema_specki YPF1618 Sulcionema specki Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Diplonemidae;Sulcionema;Sulcionema specki;strain YPF1618 no https://yadi.sk/mail/?hash=1lyMyRcsSI0p%2BKP2xcca19xt6XCSAzIgMpfOFsJ1Vs%2FFkfoNYBuP%2Bi2N%2FwZzYHFYq%2FJ6bpmRyOJonT3VoXnDag%3D%3D PRJNA550027 10.1186/s12915-020-0754-1 none transcriptome EP00756 Hemistasia_phaeocysticola YPF1303 Hemistasia phaeocysticola Euglenozoa Diplonemea Eukaryota;Discoba;Euglenozoa;Diplonemea;Hemistasiidae;Hemistasia;Hemistasia phaeocysticola;strain YPF1303 no https://yadi.sk/mail/?hash=1lyMyRcsSI0p%2BKP2xcca19xt6XCSAzIgMpfOFsJ1Vs%2FFkfoNYBuP%2Bi2N%2FwZzYHFYq%2FJ6bpmRyOJonT3VoXnDag%3D%3D PRJNA549599 10.1186/s12915-020-0754-1 none transcriptome EP00757 Euglenozoa_sp_SAG-D1 SAG-D1 N/A N/A Euglenozoa other_kinetoplasts Eukaryota;Discoba;Euglenozoa;Kinetoplastea;"D1 lineage";strain D1 no https://figshare.com/articles/Assemblies_of_Diplonemid-like_SAG/7820060 9G_35B_coassembly_scaffolds 10.1098/rstb.2019.0100 translated sequence search single-cell genome EP00758 Cryptobia_borreli Tt-JH Trypanoplasma_borreli Cryptobia borreli Euglenozoa other_kinetoplasts Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Metakinetoplastina;Parabodonida;Cryptobia;Cryptobia borreli;strain Tt-JH no https://yadi.sk/mail/?hash=1lyMyRcsSI0p%2BKP2xcca19xt6XCSAzIgMpfOFsJ1Vs%2FFkfoNYBuP%2Bi2N%2FwZzYHFYq%2FJ6bpmRyOJonT3VoXnDag%3D%3D PRJNA549827 10.1186/s12915-020-0754-1 none transcriptome EP00759 Prokinetoplastina_sp_PhF-6 PhF-6 N/A N/A Euglenozoa other_kinetoplasts Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Prokinetoplastina;"Ph lineage";strain PhF-6 no https://yadi.sk/mail/?hash=1lyMyRcsSI0p%2BKP2xcca19xt6XCSAzIgMpfOFsJ1Vs%2FFkfoNYBuP%2Bi2N%2FwZzYHFYq%2FJ6bpmRyOJonT3VoXnDag%3D%3D PRJNA549754 10.1186/s12915-020-0754-1 none transcriptome EP00760 Prokinetoplastina_sp_PhM-4 PhM-4 N/A N/A Euglenozoa other_kinetoplasts Eukaryota;Discoba;Euglenozoa;Kinetoplastea;Prokinetoplastina;"Ph lineage";strain PhM-4 no https://yadi.sk/mail/?hash=1lyMyRcsSI0p%2BKP2xcca19xt6XCSAzIgMpfOFsJ1Vs%2FFkfoNYBuP%2Bi2N%2FwZzYHFYq%2FJ6bpmRyOJonT3VoXnDag%3D%3D PRJNA549754 10.1186/s12915-020-0754-1 none transcriptome EP00761 Pharyngomonas_kirbyi N/A Pharyngomonas kirbyi Heterolobosea Heterolobosea Eukaryota;Discoba;Heterolobosea;Pharyngomonas;Pharyngomonas kirbyi no https://sra-download.ncbi.nlm.nih.gov/traces/wgs03/wgs_aux/GE/CH/GECH01/GECH01.1.fsa_nt.gz GECH01000001 10.1093/gbe/evw152 translate mRNA transcriptome EP00762 Andalucia_godoyi And28 Andalucia godoyi Jakobida Jakobida Eukaryota;Discoba;Jakobida;Andalucina;Andaluciidae;Andalucia;Andalucia godoyi;strain AND28 no https://megasun.bch.umontreal.ca/Andalucia_godoyi/Andalucia_godoyi_proteome.faa Andalucia_godoyi_proteome 10.1186/s12915-020-0741-6 none genome EP00763 Giardia_muris Roberts-Thomson Giardia muris Fornicata Diplomonadida Eukaryota;Metamonada;"BF clade";Fornicata;"DR group";Diplomonadida;Giardiinae;Giardia;Giardia muris;strain Roberts-Thomson no ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/006/247/105/GCA_006247105.1_UU_GM_1.1/GCA_006247105.1_UU_GM_1.1_protein.faa.gz UU_GM_1.1 10.1101/870949 none genome EP00764 Aduncisulcus_paluster NY0171 Aduncisulcus paluster Fornicata other_Fornicata Eukaryota;Metamonada;"BF clade";Fornicata;Aduncisulcus;Aduncisulcus paluster;strain NY0171 no https://datadryad.org/bitstream/handle/10255/dryad.137131/Assemblies.zip?sequence=1 Fasta files with assembled transcriptomes of Carpediemonas-like organisms 10.1038/s41559-017-0092 translate mRNA transcriptome EP00765 Carpediemonas_membranifera N/A Carpediemonas membranifera Fornicata other_Fornicata Eukaryota;Metamonada;"BF clade";Fornicata;Carpediemonas;Carpediemonas membranifera no https://datadryad.org/bitstream/handle/10255/dryad.137131/Assemblies.zip?sequence=1 Fasta files with assembled transcriptomes of Carpediemonas-like organisms 10.1038/s41559-017-0092 translate mRNA transcriptome EP00766 Chilomastix_caulleryi N/A Chilomastix caulleryi Fornicata other_Fornicata Eukaryota;Metamonada;"BF clade";Fornicata;Chilomastix;Chilomastix caulleryi no https://datadryad.org/bitstream/handle/10255/dryad.137131/Assemblies.zip?sequence=1 Fasta files with assembled transcriptomes of Carpediemonas-like organisms 10.1038/s41559-017-0092 translate mRNA (min length 50) transcriptome EP00767 Chilomastix_cuspidata N/A Chilomastix cuspidata Fornicata other_Fornicata Eukaryota;Metamonada;"BF clade";Fornicata;Chilomastix;Chilomastix cuspidata no https://datadryad.org/bitstream/handle/10255/dryad.137131/Assemblies.zip?sequence=1 Fasta files with assembled transcriptomes of Carpediemonas-like organisms 10.1038/s41559-017-0092 translate mRNA transcriptome EP00768 Dysnectes_brevis N/A Dysnectes brevis Fornicata other_Fornicata Eukaryota;Metamonada;"BF clade";Fornicata;Dysnectes;Dysnectes brevis;strain NY0165 no https://datadryad.org/bitstream/handle/10255/dryad.137131/Assemblies.zip?sequence=1 Fasta files with assembled transcriptomes of Carpediemonas-like organisms 10.1038/s41559-017-0092 translate mRNA transcriptome EP00769 Ergobibamus_cyprinoides N/A Ergobibamus cyprinoides Fornicata other_Fornicata Eukaryota;Metamonada;"BF clade";Fornicata;Ergobibamus;Ergobibamus cyprinoides;strain CL no https://datadryad.org/bitstream/handle/10255/dryad.137131/Assemblies.zip?sequence=1 Fasta files with assembled transcriptomes of Carpediemonas-like organisms 10.1038/s41559-017-0092 translate mRNA transcriptome EP00770 Monocercomonoides_exilis PA203 EP00707 Monocercomonoides exilis Preaxostyla Oxymonadida Eukaryota;Metamonada;Preaxostyla;Oxymonadida;Monocercomonoides;Monocercomonoides exilis;strain PA203 no https://giardiadb.org/common/downloads/Current_Release/MexilisPA203/fasta/data/GiardiaDB-46_MexilisPA203_AnnotatedProteins.fasta GiardiaDB-46_MexilisPA203_AnnotatedProteins 10.1093/molbev/msz147 none genome Improved annotation relative to previous genome release, replaces EP00707 EP00771 Trimastix_marina PCT Trimastix marina Preaxostyla trimastigids Eukaryota;Metamonada;Preaxostyla;Trimastigidae;Trimastix;Trimastix marina;strain PCT no https://datadryad.org/bitstream/handle/10255/dryad.137131/Assemblies.zip?sequence=1 Fasta files with assembled transcriptomes of Carpediemonas-like organisms 10.1038/s41559-017-0092 translate mRNA transcriptome