The main zip file (Mutalik_Dub_seq_phage.zip) includes all of the data from the
Dub-seq experiments, including counts for each barcode, fragment
scores, and gene scores.

Each group of experiments has a directory with a table of experiments
(barseq_layout.tsv), a table of fragments and their counts in the
"before" or Time0 samples (fscore_base.tsv), a table of genes
(gscore_base.tsv), as well as tables, for each experiment, of fragment
scores and gene scores (i.e., IT001.fscore.tsv and
IT001.gscore.tsv). In the gene score tables, score_mean is the average
of the fragment scores and score_cnnls is the regression-based gene
score.