ORF_ID	Contig	Start	Stop	Orientation	Cut_Off	Pass_Bitscore	Best_Hit_Bitscore	Best_Hit_ARO	Best_Identities	ARO	Model_type	SNPs_in_Best_Hit_ARO	Other_SNPs	Drug Class	Resistance Mechanism	AMR Gene Family	Predicted_DNA	Predicted_Protein	CARD_Protein_Sequence	Percentage Length of Reference Sequence	ID	Model_ID	Nudged	Note
1_1542 # 1629905 # 1631419 # 1 # ID=1_1542;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.436	1_1542	1629905	1631419	+	Strict	700	705.3	Klebsiella pneumoniae KpnH	69.0	3004597	protein homolog model	n/a	n/a	macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem	antibiotic efflux	major facilitator superfamily (MFS) antibiotic efflux pump	ATGCAAAAACCAGTTCATGGGGTGGCACTTGCCATAATGACCATTGCCTTAGCGTTGGCCACTTTTATGCAAGTGTTGGATTCGACCATTGCGAACGTTGCCATTCCAACCATTGCAGGGGATTTAGGAGCGTCAACTAGTCAAGGAACTTGGGTTATTACGTCTTTTGGGGTGGCAAATGCCATTGCCATTCCGATTACTGGTTGGTTGGCAAAACGCTTTGGCGAAGTGCGGTTGTTTTTGTTGGCGGTGTTAGGTTTTGTGGTCGCCTCTTGGCTATGTGGTATTTCACATAGCCTTGAAATGCTGATTTTATGTCGTGTGCTACAGGGCTTAGCCGCGGGTCCCATTGTTCCTCTTTCGCAAAGTTTATTATTAAATAATTATCCGCCCGAAAAACGAGGCATGGCGTTGGCGTTTTGGTCTATGACCGTGGTGGTAGCCCCTATTTTTGGACCGATTCTTGGTGGTTGGATTAGTGATAATTTACACTGGGGATGGATCTTCTTTATCAATGTACCGATTGGGTTAGCCGTGATGTTTATGACGTGGAAAACCTTGGGCGATCGTGAAACGCCGACCCAGCACAGTCCAGTGGATTTAATCGGGTTAAGTCTATTAGTGTTAGGTGTAGGTTGCTTGCAATTAATGCTCGACCAAGGGCGTGAACAGGACTGGTTTAATTCCACTGAAATTGTGGTATTAACCATCGTTTCCGTTGTTGCCTTAATTGCGTTAATTATTTGGTCATTGACCGATGATAATCCGATTATTGATGTGTCTTTATTTCAGCGACGAAATTTTGTAATTGGCTGTTTATGTTCTAGTTCAGCTTTTTTAGTTTATCTCGGTTCTGTGGTGCTGATTCCGTTGTTATTACAACAAGTTTATGGCTACACTGCCACGTGGGCGGGGCTAGCTGCTGCACCAGTGGGTATATTGCCGATCTTTCTATCACCGATTATCGGACGATTTGGGCATAAAATTGATATGCGAATTCTGGTAACATTCAGTTTTATTATGTTTGCAGTGACATTCTATTGGCGTGCTGTTACCTTTGAAACGTCCACCACCTTTTGGGATTTTGCCTTGCCGCAATTTATACAAGGTTTTGCCGTAGCGTGTTTCTTTATGCCGTTAACCACCATTACATTATCAGGTTTACCCCCACAAAAAATGGCATCCGCCTCCAGTTTATTTAACTTCTTACGGACGTTAGCCGGTTCGGTCGGCACCTCATTAACCACCTTTTTATGGTACCGCCGTGAAGCCATGCATCACACCCGTTTAACCGAAATGATTACGCCGTATGACTATAATTCACAAGTGTATTATCAAACGCTCGGTCAATTGGGGTTAAATGATACACAAATTTCCAGTATGTTGGCTCAGACTATTACGGGACAAGGCTTTATTATTGGCGCAAATGAAATCTTTTGGTTGTCTGCAATTTTATTTTTATTGCTGGTTATCGTGGTATGGTTTGCCAGACCACCCTTTGGTGGACGGCATTAA	MQKPVHGVALAIMTIALALATFMQVLDSTIANVAIPTIAGDLGASTSQGTWVITSFGVANAIAIPITGWLAKRFGEVRLFLLAVLGFVVASWLCGISHSLEMLILCRVLQGLAAGPIVPLSQSLLLNNYPPEKRGMALAFWSMTVVVAPIFGPILGGWISDNLHWGWIFFINVPIGLAVMFMTWKTLGDRETPTQHSPVDLIGLSLLVLGVGCLQLMLDQGREQDWFNSTEIVVLTIVSVVALIALIIWSLTDDNPIIDVSLFQRRNFVIGCLCSSSAFLVYLGSVVLIPLLLQQVYGYTATWAGLAAAPVGILPIFLSPIIGRFGHKIDMRILVTFSFIMFAVTFYWRAVTFETSTTFWDFALPQFIQGFAVACFFMPLTTITLSGLPPQKMASASSLFNFLRTLAGSVGTSLTTFLWYRREAMHHTRLTEMITPYDYNSQVYYQTLGQLGLNDTQISSMLAQTITGQGFIIGANEIFWLSAILFLLLVIVVWFARPPFGGRH	MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSLNMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQLEGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLILLGLVWFAKPPFGAGGGGGGAH	98.44	gnl|BL_ORD_ID|2788|hsp_num:0	3299		
1_915 # 961563 # 962747 # -1 # ID=1_915;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.450	1_915 	961563	962747	-	Strict	700	740.3	Escherichia coli EF-Tu mutants conferring resistance to Pulvomycin	92.88	3003369	protein variant model	R234F	n/a	elfamycin antibiotic	antibiotic target alteration	elfamycin resistant EF-Tu	GTGTCTAAAGAAAAATTTGAACGTACAAAACCGCACGTTAACGTGGGTACAATCGGCCACGTTGACCATGGTAAAACAACTTTAACAGCAGCCATCACCACCGTATTAGCAAAACACTACGGCGGTGCAGCGCGTGCATTTGACCAAATCGACAATGCACCAGAAGAAAAAGCCCGTGGTATCACCATCAACACCTCACACGTTGAATACGATACCCCAACTCGTCACTATGCACACGTTGACTGTCCGGGACACGCTGACTATGTGAAAAACATGATCACTGGTGCGGCACAAATGGACGGCGCTATTCTTGTAGTAGCAGCAACAGACGGCCCAATGCCACAAACACGTGAACACATCTTATTAGGTCGCCAAGTAGGCGTGCCATATATCATCGTATTCTTAAACAAATGCGACATGGTAGATGACGAAGAGTTATTAGAATTAGTGGAAATGGAAGTGCGTGAACTTCTTTCACAATACGACTTCCCGGGTGACGACACGCCAATCGTACGTGGTTCAGCCTTAAAAGCCTTAGAAGGTGAAGCAGAATGGGAAGAAAAAATTCTTGAGTTGGCTAACCATTTAGATACTTACATTCCAGAACCTGAACGTGCGATTGACCAACCGTTCTTATTACCAATTGAAGACGTCTTCTCCATTTCTGGTCGTGGTACTGTAGTAACAGGTCGTGTAGAACGTGGTATTATCCGTACTGGTGATGAAGTGGAAATCGTGGGTATCAAAGATACCGCGAAAACAACGGTAACGGGTGTAGAAATGTTCCGTAAATTACTTGACGAAGGTCGTGCAGGTGAAAACATTGGTGCATTATTACGTGGTACTAAACGTGAAGAAATCGAACGTGGTCAAGTGTTAGCAAAACCGGGTTCAATTACCCCACACACAGATTTCGAATCAGAAGTTTACGTCTTGTCAAAAGAAGAAGGTGGTCGTCACACTCCATTCTTCAAAGGTTACCGTCCACAATTCTATTTCCGTACCACAGACGTAACAGGTACAATCGAATTACCAGAAGGCGTGGAAATGGTTATGCCAGGCGACAACATCAAAATGACTGTGAGCTTAATCCACCCAATTGCGATGGACCAAGGTTTACGCTTCGCCATTCGTGAAGGCGGACGTACAGTAGGTGCTGGCGTGGTAGCGAAAATTGTTAAATAA	MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGEAEWEEKILELANHLDTYIPEPERAIDQPFLLPIEDVFSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIVK	MLSPEGESTIVRNIAVSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG	96.33	gnl|BL_ORD_ID|2023|hsp_num:0	2158		
1_1203 # 1262583 # 1263767 # 1 # ID=1_1203;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.444	1_1203 	1262583	1263767	+	Strict	700	740.3	Escherichia coli EF-Tu mutants conferring resistance to Pulvomycin	92.88	3003369	protein variant model	R234F	n/a	elfamycin antibiotic	antibiotic target alteration	elfamycin resistant EF-Tu	ATGTCTAAAGAAAAATTTGAACGTACAAAACCGCACGTTAACGTGGGTACAATCGGCCACGTTGACCATGGTAAAACAACTTTAACAGCAGCAATTACTACCGTATTAGCAAAACACTACGGCGGTGCAGCGCGTGCATTTGACCAAATTGACAATGCACCAGAAGAAAAAGCGCGTGGTATCACCATCAACACATCACACGTTGAATACGATACCCCAACTCGTCACTATGCACACGTTGACTGTCCAGGACACGCCGACTATGTGAAAAACATGATCACTGGTGCGGCACAAATGGACGGTGCAATCTTAGTAGTTGCAGCAACAGACGGCCCAATGCCACAAACACGTGAACACATCTTATTAGGTCGCCAAGTAGGCGTGCCATATATCATCGTATTCTTAAACAAATGCGACATGGTAGATGACGAAGAGTTATTAGAATTAGTGGAAATGGAAGTGCGTGAACTTCTTTCACAATACGACTTCCCGGGTGACGACACGCCAATCGTACGTGGTTCAGCCTTAAAAGCCTTAGAAGGTGAAGCAGAATGGGAAGAAAAAATTCTTGAGTTGGCTAACCATTTAGATACTTACATTCCAGAACCTGAACGTGCGATTGACCAACCGTTCTTATTACCAATTGAAGACGTCTTCTCCATTTCTGGTCGTGGTACTGTAGTAACAGGTCGTGTAGAACGTGGTATTATCCGTACTGGTGATGAAGTGGAAATCGTGGGTATCAAAGATACCGCGAAAACAACGGTAACGGGTGTAGAAATGTTCCGTAAATTACTTGACGAAGGTCGTGCAGGTGAAAACATTGGTGCATTATTACGTGGTACTAAACGTGAAGAAATCGAACGTGGTCAAGTGTTAGCAAAACCGGGTTCAATTACCCCACACACAGATTTCGAATCAGAAGTTTACGTCTTGTCAAAAGAAGAAGGTGGACGTCACACTCCATTCTTCAAAGGTTACCGTCCACAATTCTATTTCCGTACCACAGACGTAACAGGTACAATCGAATTACCAGAAGGCGTGGAAATGGTTATGCCAGGCGACAACATCAAAATGACTGTGAGCCTAATCCACCCAATTGCGATGGACCAAGGTTTACGCTTTGCGATTCGTGAAGGCGGACGTACAGTAGGTGCTGGCGTGGTAGCGAAAATTGTTAAATAA	MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGEAEWEEKILELANHLDTYIPEPERAIDQPFLLPIEDVFSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIVK	MLSPEGESTIVRNIAVSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG	96.33	gnl|BL_ORD_ID|2023|hsp_num:0	2158		
1_1751 # 1856887 # 1858722 # 1 # ID=1_1751;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.391	1_1751 	1856887	1858722	+	Strict	500	802.7	Haemophilus influenzae PBP3 conferring resistance to beta-lactam antibiotics	68.37	3004446	protein variant model	D350N, S357N	n/a	cephalosporin; cephamycin; penam	antibiotic target alteration	Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics	ATGAAAGTGAAATTTAATTCAACACGCCATCAAGCGAAATCAAAAAGTGCGGTGAAAAAATCCGTTAATTCTACCCGTGTCAAGTCTAACAAGCCAGTGAACATTTATGAAAAAAGTTTCTTAAAAGGGCGTTATCGTTGGGCGATGGGTTTTGTCTGTTTTGGATTGTTTGCTTTAGTCGCTCGTGCTGCGTTTGTGCAAACCATTAATGTGGAAACCTTTAATGATGAAGCGGATAAACGCTCTTTGCGTGAGCAAAAAGTGTTATCCGCTCGTGGTTCTATTTTAGATCGTAATGGACAAATGTTGTCGGTCAGTGTGCCGATGTATAACATTAAAGCGGATCCGAAATTTATTTTAGAAGGCAATTATTTAGCCGATCAAGAACGTTGGAAAGCTTTAGCCTCGTCACTTAATATGAAATATCAAGATTTGGTGGCAAAAATTGAGAATAAACCGAAATCTCGAGATATTATTTTAGGTCGCCAAGTGACAAAAAATGTGGCGGATTATGTGCATCAATTAAAAATCCCCGGTATTGTGTTTGAAAATGATTTCCGTCGTTTTTATCCAAGAGCGGAAGAAACGGCGCATTTAATCGGTTTTACTGATATTGATAATAATGGCATTGAAGGGATTGAGAAAAGTTTAAATAACGATTTAATCGGTAAAGCTGGTTTGCGATCTTATCGTAAAGATAAAAAAGGCAATATTGTGGAAGAAATTGCCGATGTGAAAAAATATGCAGCGCATGATGTGGTGTTGAGTATTGATGAAAAATTACAATCCATGGTGTATCGTGAAATTGCTAAAGCCGTAGAAGAAAATAAGGCGAATTCCGGTACGGCCGTGTTAGTTGATGTGCGTACTGGCGAAGTATTAGCTATGGCTAACGCACCATCTTATAATCCAAATAAACGTGCGGGCATCTCTAATGAGTTAATGCGTAACCGTGCGGTAACTGATACTTTTGAACCGGGTTCAACAGTAAAACCTTTTGTGGTGTTAACCGCATTGCAACGGGGAGCTGTGAAACGTAATGAAATTATTAATACTGGACCTTTAGTATTAAATGGTAAAGAGGTCAGAGACGTGGCTCCACGTAATCAACAAACTTTAGATGAAATTTTAGAAAATTCATCTAACCGTGGGGTAAGTCGTCTTGCCTTGCGTATGCCACCATCAGCCTTAATGGAAACCTATCAAAATGCAGGTTTAGGTAAATTAACCAATTTAGGTTTAGGGGGAGAACAGGCAGGTATGCTAGGTGCGAATCGTCAACGTTGGTCTGAGATTGAACGTGCTAACGTGGCGTTTGGTTATGGTATCAATGCCACACCCTTACAAATTGCTCGAGCTTATATTACGCTAGGTAGTTTTGGTATTTATCGTCCATTATCAATTACTAAAGTGGATCCACCGGTAATTGGCAATCGTGTTTTTTCCGAAAAAATTACCAAAGATGTGGTGCATATGATGGAAAAAGTGGCGATTAAAAATAAACGAGCCATGGTAGAAGGCTATCGGGTCGCGATTAAAACAGGGACGGCGAAAAAATTAGAAAAAGGGCATTATGTGGATAAATATATGGCCTATACCGCAGGGCTTGCACCCGTGACGGATCCACGTTTTGCTTTAGTGATTTTAATTGATGATCCTAAGGCGGGACAATATTATGGTGGTGCTATCTCTGCACCTGTATTCTCAAGTATTATGGGCTATGCGTTACGTACTTATAATGTTACGCCAGATTCCGAAGAAAGTACGGCAAATATCAGAAATATTAAACGTGTGGTACGATTAACCGATAAAATAGACAGAAAACAAACAAATTAA	MKVKFNSTRHQAKSKSAVKKSVNSTRVKSNKPVNIYEKSFLKGRYRWAMGFVCFGLFALVARAAFVQTINVETFNDEADKRSLREQKVLSARGSILDRNGQMLSVSVPMYNIKADPKFILEGNYLADQERWKALASSLNMKYQDLVAKIENKPKSRDIILGRQVTKNVADYVHQLKIPGIVFENDFRRFYPRAEETAHLIGFTDIDNNGIEGIEKSLNNDLIGKAGLRSYRKDKKGNIVEEIADVKKYAAHDVVLSIDEKLQSMVYREIAKAVEENKANSGTAVLVDVRTGEVLAMANAPSYNPNKRAGISNELMRNRAVTDTFEPGSTVKPFVVLTALQRGAVKRNEIINTGPLVLNGKEVRDVAPRNQQTLDEILENSSNRGVSRLALRMPPSALMETYQNAGLGKLTNLGLGGEQAGMLGANRQRWSEIERANVAFGYGINATPLQIARAYITLGSFGIYRPLSITKVDPPVIGNRVFSEKITKDVVHMMEKVAIKNKRAMVEGYRVAIKTGTAKKLEKGHYVDKYMAYTAGLAPVTDPRFALVILIDDPKAGQYYGGAISAPVFSSIMGYALRTYNVTPDSEESTANIRNIKRVVRLTDKIDRKQTN	MVKFNSSRKSGKSKKTIRKLTAPETVKQNKPQKVFEKCFMRGRYMLSTVLILLGLCALVARAAYVQSINADTLSNEADKRSLRKDEVLSVRGSILDRNGQLLSVSVPMSAIVADPKTMLKENSLADKERIAALAEELGMTENDLVKKIEKNSKSGYLYLARQVELSKANYIRRLKIKGIILETEHRRFYPRVEEAAHVVGYTDIDGNGIEGIEKSFNSLLVGKDGSRTVRKDKRGNIVAHISDEKKYDAQDVTLSIDEKLQSMVYREIKKAVSENNAESGTAVLVDVRTGEVLAMATAPSYNPNNRVGVKSELMRNRAITDTFEPGSTVKPFVVLTALQRGVVKRDEIIDTTSFKLSGKEIVDVAPRAQQTLDEILMNSSNRGVSRLALRMPPSALMETYQNAGLSKPTDLGLIGEQVGILNANRKRWADIERATVAYGYGITATPLQIARAYATLGSFGVYRPLSITKVDPPVIGKRVFSEKITKDIVGILEKVAIKNKRAMVEGYRVGVKTGTARKIENGHYVNKYVAFTAGIAPISDPRYALVVLINDPKAGEYYGGAVSAPVFSNIMGYALRANAIPQDAEAAENTTTKSAKRIVYIGEHKNQKVN	100.16	gnl|BL_ORD_ID|2568|hsp_num:0	2886