ORF_ID	Contig	Start	Stop	Orientation	Cut_Off	Pass_Bitscore	Best_Hit_Bitscore	Best_Hit_ARO	Best_Identities	ARO	Model_type	SNPs_in_Best_Hit_ARO	Other_SNPs	Drug Class	Resistance Mechanism	AMR Gene Family	Predicted_DNA	Predicted_Protein	CARD_Protein_Sequence	Percentage Length of Reference Sequence	ID	Model_ID	Nudged	Note
SRHX01000008.1_34 # 30748 # 32262 # -1 # ID=47_34;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.436	SRHX01000008.1_34	30748	32262	-	Strict	700	705.3	Klebsiella pneumoniae KpnH	69.0	3004597	protein homolog model	n/a	n/a	macrolide antibiotic; fluoroquinolone antibiotic; aminoglycoside antibiotic; carbapenem; cephalosporin; penam; peptide antibiotic; penem	antibiotic efflux	major facilitator superfamily (MFS) antibiotic efflux pump	ATGCAAAAACCAGTTCATGGGGTGGCACTTGCCATAATGACCATTGCCTTAGCGTTGGCCACTTTTATGCAAGTGTTGGATTCGACCATTGCGAACGTTGCCATTCCAACCATTGCAGGGGATTTAGGAGCGTCAACTAGTCAAGGAACTTGGGTTATTACGTCTTTTGGGGTGGCAAATGCCATTGCCATTCCGATTACTGGTTGGTTGGCAAAACGCTTTGGCGAAGTGCGGTTGTTTTTGTTGGCGGTGTTAGGTTTTGTGGTCGCCTCTTGGCTATGTGGTATTTCACATAGCCTTGAAATGCTGATTTTATGTCGTGTGCTACAGGGCTTAGCCGCGGGTCCCATTGTTCCTCTTTCGCAAAGTTTATTATTAAATAATTATCCGCCCGAAAAACGAGGCATGGCGTTGGCGTTTTGGTCTATGACCGTGGTGGTAGCCCCTATTTTTGGACCGATTCTTGGTGGTTGGATTAGTGATAATTTACACTGGGGATGGATCTTCTTTATCAATGTACCGATTGGGTTAGCCGTGATGTTTATGACGTGGAAAACCTTGGGCGATCGTGAAACGCCGACCCAGCACAGTCCAGTGGATTTAATCGGGTTAAGTCTATTAGTGTTAGGTGTAGGTTGCTTGCAATTAATGCTCGACCAAGGGCGTGAACAGGACTGGTTTAATTCCACTGAAATTGTGGTATTAACCATCGTTTCCGTTGTTGCCTTAATTGCGTTAATTATTTGGTCATTGACCGATGATAATCCGATTATTGATGTGTCTTTATTTCAGCGACGAAATTTTGTAATTGGCTGTTTATGTTCTAGTTCAGCTTTTTTAGTTTATCTCGGTTCTGTGGTGCTGATTCCGTTGTTATTACAACAAGTTTATGGCTACACTGCCACGTGGGCGGGGCTAGCTGCTGCACCAGTGGGTATATTGCCGATCTTTCTATCACCGATTATCGGACGATTTGGGCATAAAATTGATATGCGAATTCTGGTAACATTCAGTTTTATTATGTTTGCAGTGACATTCTATTGGCGTGCTGTTACCTTTGAAACGTCCACCACCTTTTGGGATTTTGCTTTGCCGCAATTTATACAAGGTTTTGCCGTAGCGTGTTTCTTTATGCCGTTAACCACCATTACATTATCAGGTTTACCCCCACAAAAAATGGCATCCGCCTCCAGTTTATTTAACTTCTTACGGACGTTAGCCGGTTCGGTCGGCACCTCATTAACCACCTTTTTATGGTACCGCCGTGAAGCCATGCATCACACCCGTTTAACCGAAATGATTACGCCGTATGACTATAATTCACAAGTGTATTATCAAACGCTCGGTCAATTGGGGTTAAATGATACACAAATTTCCAGTATGTTGGCTCAGACTATTACGGGACAAGGCTTTATTATTGGCGCAAATGAAATCTTTTGGTTGTCTGCAATTTTATTTTTATTGCTGGTTATCGTGGTATGGTTTGCCAGACCACCCTTTGGTGGACGGCATTAA	MQKPVHGVALAIMTIALALATFMQVLDSTIANVAIPTIAGDLGASTSQGTWVITSFGVANAIAIPITGWLAKRFGEVRLFLLAVLGFVVASWLCGISHSLEMLILCRVLQGLAAGPIVPLSQSLLLNNYPPEKRGMALAFWSMTVVVAPIFGPILGGWISDNLHWGWIFFINVPIGLAVMFMTWKTLGDRETPTQHSPVDLIGLSLLVLGVGCLQLMLDQGREQDWFNSTEIVVLTIVSVVALIALIIWSLTDDNPIIDVSLFQRRNFVIGCLCSSSAFLVYLGSVVLIPLLLQQVYGYTATWAGLAAAPVGILPIFLSPIIGRFGHKIDMRILVTFSFIMFAVTFYWRAVTFETSTTFWDFALPQFIQGFAVACFFMPLTTITLSGLPPQKMASASSLFNFLRTLAGSVGTSLTTFLWYRREAMHHTRLTEMITPYDYNSQVYYQTLGQLGLNDTQISSMLAQTITGQGFIIGANEIFWLSAILFLLLVIVVWFARPPFGGRH	MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNLGSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSLNMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMRRLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQLEGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLILLGLVWFAKPPFGAGGGGGGAH	98.44	gnl|BL_ORD_ID|2788|hsp_num:0	3299		
SRHX01000001.1_228 # 232241 # 233425 # 1 # ID=11_228;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.442	SRHX01000001.1_228 	232241	233425	+	Strict	700	740.3	Escherichia coli EF-Tu mutants conferring resistance to Pulvomycin	92.88	3003369	protein variant model	R234F	n/a	elfamycin antibiotic	antibiotic target alteration	elfamycin resistant EF-Tu	ATGTCTAAAGAAAAATTTGAACGTACAAAACCGCACGTTAACGTGGGTACAATCGGCCACGTTGACCATGGTAAAACAACTTTAACAGCAGCAATCACCACTGTATTAGCAAAACACTACGGTGGTGCTGCGCGTGCATTTGACCAAATCGATAATGCACCAGAAGAAAAAGCCCGTGGTATCACCATCAACACTTCACACGTTGAATACGATACCCCAACTCGTCACTATGCACACGTTGACTGTCCGGGACACGCCGACTATGTTAAAAACATGATTACCGGTGCGGCACAAATGGACGGTGCAATCTTAGTAGTAGCAGCAACCGATGGCCCAATGCCACAAACTCGTGAGCACATCTTATTAGGTCGCCAAGTAGGTGTTCCTTACATCATCGTATTCTTAAACAAATGCGACATGGTAGATGACGAAGAGTTATTAGAATTAGTGGAAATGGAAGTGCGTGAACTTCTTTCACAATACGATTTCCCAGGCGATGACACCCCAATCGTGCGTGGTTCTGCCTTAAAAGCCTTAGAAGGTGAAGCAGAATGGGAAGAAAAAATTCTTGAGTTGGCTAACCATTTAGATACTTACATTCCAGAACCTGAACGTGCGATTGACCAACCGTTCTTATTACCAATTGAAGACGTATTCTCCATTTCTGGTCGTGGTACTGTAGTAACAGGTCGTGTAGAACGTGGTATTATCCGTACAGGTGATGAAGTGGAAATCGTGGGTATCAAAGATACCGCGAAAACAACCGTAACGGGTGTAGAAATGTTCCGTAAATTACTTGACGAAGGTCGTGCAGGTGAAAACATTGGTGCATTATTACGTGGTACTAAACGTGAAGAAATCGAACGTGGTCAAGTGTTAGCAAAACCGGGTTCAATTACCCCACACACTGACTTTGAATCAGAAGTTTATGTATTGTCAAAAGAAGAAGGTGGACGTCACACTCCATTCTTCAAAGGTTACCGTCCACAGTTCTACTTCCGTACCACAGACGTAACAGGTACAATCGAATTACCAGAAGGCGTGGAAATGGTTATGCCAGGCGACAACATCAAAATGACTGTGAGCCTAATCCACCCAATTGCGATGGACCAAGGTTTACGCTTTGCGATTCGTGAAGGCGGACGTACAGTAGGTGCTGGCGTGGTAGCGAAAATTGTTAAATAA	MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGEAEWEEKILELANHLDTYIPEPERAIDQPFLLPIEDVFSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIVK	MLSPEGESTIVRNIAVSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG	96.33	gnl|BL_ORD_ID|2023|hsp_num:0	2158		
SRHX01000002.1_256 # 257989 # 259824 # 1 # ID=21_256;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.391	SRHX01000002.1_256 	257989	259824	+	Strict	500	802.7	Haemophilus influenzae PBP3 conferring resistance to beta-lactam antibiotics	68.37	3004446	protein variant model	D350N, S357N	n/a	cephalosporin; cephamycin; penam	antibiotic target alteration	Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics	ATGAAAGTGAAATTTAATTCAACACGCCATCAAGCGAAATCAAAAAGTGCGGTGAAAAAATCCGTTAATTCTACCCGTGTCAAGTCTAACAAGCCAGTGAACATTTATGAAAAAAGTTTCTTAAAAGGGCGTTATCGTTGGGCGATGGGTTTTGTCTGTTTTGGATTGTTTGCTTTAGTCGCTCGTGCTGCGTTTGTGCAAACCATTAATGTGGAAACCTTTAATGATGAAGCGGATAAACGCTCTTTGCGTGAGCAAAAAGTGTTATCCGCTCGTGGTTCTATTTTAGATCGTAATGGACAAATGTTGTCGGTCAGTGTGCCGATGTATAACATTAAAGCGGATCCGAAATTTATTTTAGAAGGCAATTATTTAGCCGATCAAGAACGTTGGAAAGCTTTAGCCTCGTCACTTAATATGAAATATCAAGATTTGGTGGCAAAAATTGAGAATAAACCGAAATCTCGAGATATTATTTTAGGTCGCCAAGTGACAAAAAATGTGGCGGATTATGTGCATCAATTAAAAATCCCCGGTATTGTGTTTGAAAATGATTTCCGTCGTTTTTATCCAAGAGCGGAAGAAACGGCGCATTTAATCGGTTTTACTGATATTGATAATAATGGCATTGAAGGGATTGAGAAAAGTTTAAATAACGATTTAATCGGTAAAGCTGGTTTGCGATCTTATCGTAAAGATAAAAAAGGCAATATTGTGGAAGAAATTGCCGATGTGAAAAAATATGCAGCGCATGATGTGGTGTTGAGTATTGATGAAAAATTACAATCCATGGTGTATCGTGAAATTGCTAAAGCCGTAGAAGAAAATAAGGCGAATTCCGGTACGGCCGTGTTAGTTGATGTGCGTACTGGCGAAGTATTAGCTATGGCTAACGCACCATCTTATAATCCAAATAAACGTGCGGGCATCTCTAATGAGTTAATGCGTAACCGTGCGGTAACTGATACTTTTGAACCGGGTTCAACAGTAAAACCTTTTGTGGTGTTAACCGCATTGCAACGGGGAGCTGTGAAACGTAATGAAATTATTAATACTGGACCTTTAGTATTAAATGGTAAAGAGGTCAGAGACGTGGCTCCACGTAATCAACAAACTTTAGATGAAATTTTAGAAAATTCATCTAACCGTGGGGTAAGTCGTCTTGCCTTGCGTATGCCACCATCAGCCTTAATGGAAACCTATCAAAATGCAGGTTTAGGTAAATTAACCAATTTAGGTTTAGGGGGAGAACAGGCAGGTATGCTAGGTGCGAATCGTCAACGTTGGTCTGAGATTGAACGTGCTAACGTGGCGTTTGGTTATGGTATCAATGCCACACCCTTACAAATTGCTCGAGCTTATATTACGCTAGGTAGTTTTGGTATTTATCGTCCATTATCAATTACTAAAGTGGATCCACCGGTAATTGGCAATCGTGTTTTTTCCGAAAAAATTACCAAAGATGTGGTGCATATGATGGAAAAAGTGGCGATTAAAAATAAACGAGCCATGGTAGAAGGCTATCGGGTCGCGATTAAAACAGGGACGGCGAAAAAATTAGAAAAAGGGCATTATGTGGATAAATATATGGCCTATACCGCAGGGCTTGCACCCGTGACGGATCCACGTTTTGCTTTAGTGATTTTAATTGATGATCCTAAGGCGGGACAATATTATGGTGGTGCTATCTCTGCACCTGTATTCTCAAGTATTATGGGCTATGCGTTACGTACTTATAATGTTACGCCAGATTCCGAAGAAAGTACGGCAAATATCAGAAATATTAAACGTGTGGTACGATTAACCGATAAAATAGACAGAAAACAAACAAATTAA	MKVKFNSTRHQAKSKSAVKKSVNSTRVKSNKPVNIYEKSFLKGRYRWAMGFVCFGLFALVARAAFVQTINVETFNDEADKRSLREQKVLSARGSILDRNGQMLSVSVPMYNIKADPKFILEGNYLADQERWKALASSLNMKYQDLVAKIENKPKSRDIILGRQVTKNVADYVHQLKIPGIVFENDFRRFYPRAEETAHLIGFTDIDNNGIEGIEKSLNNDLIGKAGLRSYRKDKKGNIVEEIADVKKYAAHDVVLSIDEKLQSMVYREIAKAVEENKANSGTAVLVDVRTGEVLAMANAPSYNPNKRAGISNELMRNRAVTDTFEPGSTVKPFVVLTALQRGAVKRNEIINTGPLVLNGKEVRDVAPRNQQTLDEILENSSNRGVSRLALRMPPSALMETYQNAGLGKLTNLGLGGEQAGMLGANRQRWSEIERANVAFGYGINATPLQIARAYITLGSFGIYRPLSITKVDPPVIGNRVFSEKITKDVVHMMEKVAIKNKRAMVEGYRVAIKTGTAKKLEKGHYVDKYMAYTAGLAPVTDPRFALVILIDDPKAGQYYGGAISAPVFSSIMGYALRTYNVTPDSEESTANIRNIKRVVRLTDKIDRKQTN	MVKFNSSRKSGKSKKTIRKLTAPETVKQNKPQKVFEKCFMRGRYMLSTVLILLGLCALVARAAYVQSINADTLSNEADKRSLRKDEVLSVRGSILDRNGQLLSVSVPMSAIVADPKTMLKENSLADKERIAALAEELGMTENDLVKKIEKNSKSGYLYLARQVELSKANYIRRLKIKGIILETEHRRFYPRVEEAAHVVGYTDIDGNGIEGIEKSFNSLLVGKDGSRTVRKDKRGNIVAHISDEKKYDAQDVTLSIDEKLQSMVYREIKKAVSENNAESGTAVLVDVRTGEVLAMATAPSYNPNNRVGVKSELMRNRAITDTFEPGSTVKPFVVLTALQRGVVKRDEIIDTTSFKLSGKEIVDVAPRAQQTLDEILMNSSNRGVSRLALRMPPSALMETYQNAGLSKPTDLGLIGEQVGILNANRKRWADIERATVAYGYGITATPLQIARAYATLGSFGVYRPLSITKVDPPVIGKRVFSEKITKDIVGILEKVAIKNKRAMVEGYRVGVKTGTARKIENGHYVNKYVAFTAGIAPISDPRYALVVLINDPKAGEYYGGAVSAPVFSNIMGYALRANAIPQDAEAAENTTTKSAKRIVYIGEHKNQKVN	100.16	gnl|BL_ORD_ID|2568|hsp_num:0	2886		
SRHX01000009.1_59 # 59448 # 60632 # 1 # ID=48_59;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.446	SRHX01000009.1_59 	59448	60632	+	Strict	700	740.3	Escherichia coli EF-Tu mutants conferring resistance to Pulvomycin	92.88	3003369	protein variant model	R234F	n/a	elfamycin antibiotic	antibiotic target alteration	elfamycin resistant EF-Tu	GTGTCTAAAGAAAAATTTGAACGTACAAAACCGCACGTTAACGTGGGTACAATCGGCCACGTTGACCATGGTAAAACAACTTTAACAGCAGCAATTACTACCGTATTAGCAAAACACTACGGCGGTGCAGCGCGTGCATTTGACCAAATTGACAATGCACCAGAAGAAAAAGCGCGTGGTATCACCATCAACACATCACACGTTGAATACGATACCCCAACTCGTCACTATGCACACGTTGACTGTCCAGGACACGCCGACTATGTGAAAAACATGATCACTGGTGCGGCACAAATGGACGGCGCTATTCTTGTAGTAGCAGCAACTGACGGCCCAATGCCACAAACACGTGAGCACATCTTATTAGGTCGCCAAGTAGGCGTGCCATATATCATCGTATTCTTAAACAAATGCGACATGGTAGATGACGAAGAGTTATTAGAATTAGTGGAAATGGAAGTGCGTGAACTTCTTTCACAATACGACTTCCCGGGTGACGACACGCCAATCGTACGTGGTTCAGCCTTAAAAGCCTTAGAAGGTGAAGCAGAATGGGAAGAAAAAATTCTTGAGTTGGCTAACCATTTAGATACTTACATTCCAGAACCTGAACGTGCGATTGACCAACCGTTCTTATTACCAATTGAAGACGTATTCTCCATTTCTGGTCGTGGTACTGTAGTAACAGGTCGTGTAGAACGTGGTATTATCCGTACTGGTGATGAAGTGGAAATCGTGGGTATCAAAGATACCGCGAAAACAACCGTAACGGGTGTAGAAATGTTCCGTAAATTACTTGACGAAGGTCGTGCAGGTGAAAACATCGGTGCATTATTGCGTGGTACAAAACGTGAAGAAATCGAACGTGGTCAAGTATTGGCAAAACCGGGTTCAATTACCCCACACACAGATTTCGAATCAGAAGTTTATGTCTTGTCAAAAGAAGAAGGTGGTCGTCACACTCCATTCTTCAAAGGTTACCGTCCACAATTCTATTTCCGTACCACAGACGTAACAGGTACAATCGAATTACCAGAAGGCGTGGAAATGGTTATGCCAGGCGACAACATCAAAATGACTGTGAGCCTAATCCACCCAATTGCGATGGACCAAGGTTTACGCTTTGCGATTCGTGAAGGCGGACGTACAGTAGGTGCTGGCGTGGTAGCGAAAATTGTTAAATAA	MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKHYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGEAEWEEKILELANHLDTYIPEPERAIDQPFLLPIEDVFSISGRGTVVTGRVERGIIRTGDEVEIVGIKDTAKTTVTGVEMFRKLLDEGRAGENIGALLRGTKREEIERGQVLAKPGSITPHTDFESEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMTVSLIHPIAMDQGLRFAIREGGRTVGAGVVAKIVK	MLSPEGESTIVRNIAVSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVLG	96.33	gnl|BL_ORD_ID|2023|hsp_num:0	2158