Analysis of poly-G tracts in CCUG 22395


Strain name: CCUG 22395
Filepath: ../polyG/campy.new\787411-1059198265.gb
Species: C. lari

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP007776398393A12None441-5656bp upstream of UPTC4110_0426799molybdopterin-containing oxidoreductase I, DMSO/TMAO/BSO reductase family, catalytic subunitCFT03427_0794
CFT03427_0438
CFF04554_0427CFF8240_0429CSG_5080CFV97608_0429CFTSP3_0438
CFTSP3_0849
CFVI03293_0426CR44_04040
CR44_02205
CHH_0419
CHH_0761
CIG1485E_0536CIG2463D_0536CINS_0409UPTC4110_0426CONCH_0433UPTC3659_0450Cla_0430UPTC16701_0426UPTC16712_0432CD56_02130CPEL_0439CAQ16704_0446CSUB8521_0462CSUB8523_0448CVOL_0420
1CP007776432068C9None-1-305305bp upstream of UPTC4110_0458216S ribosomal RNA
2CP007776488521C10None-1-305305bp upstream of UPTC4110_0521216S ribosomal RNA
3CP007776547551G10104420UPTC4110_0579763autotransporter domain proteinUPTC4110_0579CONCH_0577UPTC3659_0606CSUB8521_0608CSUB8523_0595CVOL_0507
4CP007776674502G994430UPTC4110_0710575No annotation dataUPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
5CP007776922964G9None444-5050bp upstream of UPTC4110_0958784autotransporter domain proteinUPTC4110_0958CONCH_0934UPTC3659_1194UPTC16712_0986CPEL_1082CAQ16704_0970CSUB8521_1148CSUB8523_1254
6CP0077761029406G10104450UPTC4110_1065419hypothetical protein (DUF2920 domain)UPTC4110_1065UPTC3659_1299UPTC16701_1056UPTC16712_1086CD56_05580CAQ16704_1077
7CP0077761115813G994430UPTC4110_1148870hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345M635_08855C8J_0908
C8J_0463
A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1467
CAQ16704_1182
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
8CP0077761262557G99290UPTC4110_1290252formyltransferase domain-containing proteinPJ17_06920JJD26997_0414C8J_1241RC25_06185CJM1cam_1280ICDCCJ07001_1253CJM1_1280MTVDSCj20_1304CJE1498CjjRM3196_1322CjjRM3197_1322CJS3_1403N149_1269G157_02280VC76_06560AR446_01620YSQ_02320YSU_02350A6K30_02295UPTC4110_1290Cla_1312UPTC16712_1306
9CP0077761436600C10None446-144144bp upstream of UPTC4110_1471294No annotation data
10CP0077761471050G10104470UPTC4110_15031237hemagglutinin domain-containing proteinUPTC4110_1503CPEL_1629