Analysis of poly-G tracts in CCUG 27631


Strain name: CCUG 27631
Filepath: ../polyG/campy.new\740401-1028383162.gb
Species: C. hyointestinalis

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01557620054G993210CHL_001993No annotation data
1CP01557620063A10None322-88bp upstream of CHL_001993No annotation data
2CP01557632104C1093230CHL_0034817PAS sensor-containing diguanylate cyclase/phosphodiesteraseCFT03427_1680CFF04554_1733CFF8240_1735CSG_18650CFV97608_1860CFTSP3_1745CFVI03293_1757CR44_08530CHL_0034CHH_1716CIG1485E_1619CIG2463D_1816CIG11343_1555
3CP01557667089G873240CHL_0067488No annotation dataCHL_0067
4CP01557668442G763250CHL_0068386No annotation dataCHL_0068
5CP01557669702G993260CHL_0070315SAM-dependent methyltransferaseCHL_0070
6CP01557673760A10103270CHL_0074228metallophosphataseCCC13826_0534CHL_0074
7CP01557692430G993280CHL_0091107No annotation data
8CP015576104934G10103290CHL_0105543type III restriction/modification system, mod subunitCHL_0105
9CP015576126722G993300CHL_0142206formyltransferase domain-containing proteinCHL_0142
10CP015576176416G9980CHL_0193430hypothetical proteinCHL_0193UPTC3659_0914
11CP015576199173C9None331-369369bp upstream of CHL_021657hypothetical proteinCHL_0216
12CP015576214684G883320CHL_0231406ATP-grasp domain-containing proteinCJH_06665CHL_0231CHH_1590CIG1485E_1500CIG2463D_1693CIG11343_1444
13CP015576221312G883330CHL_0238246WbqC family proteinCHL_0238CHH_1597
14CP015576223021G993340CHL_0240340aminotransferase, DegT/DnrJ/EryC1/StrS familyCHL_0240CHH_1599CIG1485E_1504CIG2463D_1701CIG11343_1453
15CP015576225205G9102390CHL_0243138No annotation data
16CP015576225393G10103350CHL_024369No annotation data
17CP015576226501G992410CHL_0244229SAM-dependent methyltransferaseCFT03427_1511
CFT03427_1512
CFF04554_1564
CFF04554_1563
CFF8240_1555
CFF8240_1554
CSG_16900
CSG_16910
CFV97608_1688CFTSP3_1575
CFTSP3_1576
CFVI03293_1586CR44_07665
CR44_07670
CHL_0244
18CP015576269211G10None336-7272bp upstream of CHL_029195hypothetical proteinCHL_0291
19CP015576376278C993370CHL_0424639TonB-dependent receptorCHL_0424CHH_0268
20CP015576394772G993380CHL_0448532SAM-dependent methyltransferaseCHL_0448
21CP015576444387G10103390CHL_0502351glycosyltransferase, family 1CHAB381_0661CHL_0502CIG1485E_1412CIG2463D_1603CIG11343_1357
22CP015576610885C10103400CHL_0686234carboxy-S-adenosyl-L-methionine synthaseCj0590CJJ81176_0618A911_02880PJ16_02945PJ17_02860N135_00641N564_00578N565_00624N755_00623PJ18_02950PJ19_03210JJD26997_1078BN867_05990M635_07315UC78_0574C8J_0552CJ8421_02880RC25_02845CJM1cam_0567CJH_02995CJSA_0558ICDCCJ07001_538CJM1_0567MTVDSCj20_0610ERS445056_00577A0W68_02775H730_03825CJE0693CjjRM1285_0563AXW77_02890CjjRM3196_0569CjjRM3197_0569CJS3_0580A0W69_03820QZ67_00605N149_1222AB430_07990G157_02500VC76_06330AR446_01850ATE51_01042YSQ_02555YSS_06850YSU_02580A6K30_02520CCC13826_2026CCON33237_1306CCV52592_1562CFT03427_1086CFF04554_1136CFF8240_1109CSG_8860CFV97608_1161CFTSP3_1148CFVI03293_1106CR44_05525CGRAC_0902CHAB381_1013CHL_0686CHH_0651CIG1485E_1154CIG2463D_1245CIG11343_1108CINS_0656UPTC4110_0691CONCH_0685UPTC3659_0775Cla_0676UPTC16701_0682UPTC16712_0687CD56_03690CPEL_0744CAQ16704_0856CSUB8521_0721CSUB8523_0809CUREO_0799CVOL_0670
23CP015576627618C10103410CHL_0706352diguanylate cyclaseCHL_0706CHH_0669
24CP015576707831G873420CHL_0780765No annotation dataCHL_0780
CHL_0782
CHH_0746
CHH_1466
25CP015576708027C9None343-138138bp upstream of CHL_078039No annotation data
26CP015576711394G873420CHL_0782764No annotation dataCHL_0780
CHL_0782
27CP015576711590C9None344-138138bp upstream of CHL_078230No annotation data
28CP015576714391G873420CHL_0783764No annotation dataCHL_0783CHH_0746
CHH_1466
29CP015576714587C9None345-138138bp upstream of CHL_078332No annotation data
30CP015576725744T10None346-4444bp upstream of CHL_0793494hypothetical proteinCHL_0793
31CP015576757953G7None347-3737bp upstream of CHL_0832451hypothetical proteinCHL_0832
32CP015576758082C9None347-166166bp upstream of CHL_0832451hypothetical proteinCHL_0832
33CP015576794720G883480CHL_0862377No annotation dataCCV52592_0864CHL_0862CHH_0868CIG1485E_0946CIG2463D_0946CIG11343_0927
34CP015576799523G993490CHL_0867173PAS sensor-containing signal-transduction proteinCCC13826_1233CCON33237_0927CCV52592_1962CFT03427_0992CFF04554_1002CFF8240_1012CSG_9820CFV97608_1069CFTSP3_1045CFVI03293_0747CR44_05040CHL_0867CVOL_0940
35CP015576933768G9None350-55bp upstream of CHL_1002117hypothetical proteinCFF04554_1101CSG_7100
CSG_13300
CFV97608_1336
CFV97608_0730
CFTSP3_0693CFVI03293_1045CHL_1002CIG2463D_1459
CIG2463D_1362
36CP015576966973G10102330CHL_1051618type III restriction/modification system, mod subunitCR44_04865CHL_1051CHH_1055CIG11343_0145
CIG11343_0014
37CP0155761031617G993510CHL_1115198No annotation data
38CP0155761072892G993520CHL_1160388glycosyltransferase, family 8CHL_1160CAQ16704_0350
39CP0155761113545C9None-1-322322bp upstream of CHL_1204216S ribosomal RNA
40CP0155761147889C8None353-126126bp upstream of CHL_124060hypothetical proteinCFT03427_1020CFTSP3_1082CR44_05180CHL_1240CHH_1113CIG11343_0700
41CP0155761243058G9None354-1212bp upstream of CHL_1325126receiver domain proteinCFT03427_1246CFF04554_1296CFF8240_1269CSG_14160CFV97608_1420CFTSP3_1308CFVI03293_1320CR44_06290CHL_1325CHH_1282CIG1485E_1295CIG2463D_1428CIG11343_1246
42CP0155761284134G9None220-3838bp upstream of CHL_1373197outer membrane beta-barrel domain proteinCCC13826_0292
CCC13826_0288
CCC13826_0601
CCON33237_1789CCV52592_1369CHL_1373CHH_0837CIG1485E_0807CIG2463D_0808CIG11343_0771
43CP0155761340639G883550CHL_1435424aminoglycoside N3'-acetyltransferaseCHL_1435
44CP0155761342905G993560CHL_1437260short-chain dehydrogenase/reductaseCHL_1437
45CP0155761404282C10None-1-322322bp upstream of CHL_1489216S ribosomal RNA
46CP0155761478852G10113570CCUG 27631 [0]545No data, identified by scriptCCV52592_0568CFT03427_1588CFF04554_1638CFF8240_1636CSG_17700CFV97608_1763CFTSP3_1653CFVI03293_1660CR44_08070CHL_1726
CCUG 27631 [0]
CHH_1463
CHH_1631
CHH_1632
CIG1485E_1540
CIG1485E_1539
CIG2463D_1736
CIG2463D_1737
CIG11343_1485CAQ16704_0162
47CP0155761604938G8None358-112112bp upstream of CHL_1682104hypothetical proteinCHL_1682
48CP0155761611129G1010290CHL_1689243formyltransferase domain-containing proteinJJD26997_0414AR446_01620YSU_02350CHL_1689CIG1485E_0401CIG11343_0350
49CP0155761614991G1010150CHL_1692424putative Zn-peptidase, M28 family (DUF2172 domain)Cj1295A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
50CP0155761619644G993590CHL_1698362type I restriction/modification system, S subunitCHL_1698CIG11343_0101
51CP0155761628790G9None35-6868bp upstream of CHL_1706128putative phospholipase / phosphodiesteraseCHL_1706
52CP0155761629050G11None360-44bp upstream of CHL_170765No annotation dataCHL_1707