Analysis of poly-G tracts in LMG 9260


Strain name: LMG 9260
Filepath: ../polyG/campy.new\740391-1028380459.gb
Species: C. hyointestinalis

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP0155758676G9None361-109109bp upstream of CHH_0008212IS605/IS607 family integrase/resolvaseCJ8421_04055CSG_12240
CSG_1410
CSG_19100
CFV97608_0832
CFV97608_0140
CFV97608_0475
CFV97608_1687
CFV97608_1912
CFV97608_0620
CFVI03293_0981
CFVI03293_0734
CFVI03293_0438
CFVI03293_1059
CHH_0422
CHH_1540
CHH_1308
CHH_0008
1CP01557521871G10None362-2020bp upstream of CHH_0019345putative membrane protein, EpsG familyCHH_0019CIG1485E_0022CIG2463D_0022
2CP01557523940G993630CHH_0020754glycosyltransferase, family 1CHL_0081
CHL_0079
CHH_0020CIG1485E_0024
CIG1485E_0023
CIG2463D_0023
3CP01557527956G883640CHH_0023194putative serine acetyltransferaseCHH_0023CIG2463D_0026
4CP01557528652G883650CHH_0024207methyltransferaseCHH_0024CIG2463D_0028
5CP01557534174G993660CHH_0029438putative Zn-peptidase, M28 family (DUF2172 domain)CHH_0029CIG2463D_0034
6CP01557537305G983670CHH_0032182hypothetical proteinCHH_0032CIG2463D_0036
7CP01557537697G993680CHH_0033301methyltransferaseCHH_0033
8CP01557543747G993690CHH_0038283methyltransferase FkbM family protein, putativeCHH_0038CIG2463D_0041
9CP01557545948G883700CHH_0041194maltose O-acyltransferase (MAT)-like acetyltransferaseCHH_0041CIG2463D_0042
10CP01557546906G873710CHH_0042256xenobiotic acyltransferase (XAT) family acetyltransferaseCHH_0042CIG2463D_0044
11CP01557556995G993720CHH_0054231SAM-dependent methyltransferaseCHH_0054
12CP015575140107AT6None373-130130bp upstream of CHH_0155557anaerobic C4-dicarboxylate transporterCj0671CJJ81176_0697A911_03270PJ16_03335PJ17_03250N135_00720N564_00655N565_00702N755_00700PJ18_03330PJ19_03600BN867_06730M635_07685C8J_0626CJ8421_03285RC25_01260CJM1cam_0643CJH_03375CJSA_0635ICDCCJ07001_612CJM1_0643MTVDSCj20_0684ERS445056_00653A0W68_03145H730_04235CJE0772CjjRM1285_0638AXW77_03280CjjRM3196_0643CjjRM3197_0643CJS3_0662A0W69_04190QZ67_00684N149_0635AB430_04725G157_05435VC76_03340AR446_04885ATE51_02262YSQ_05980YSS_03060YSU_05630A6K30_05500CCC13826_1000CCON33237_0438CCV52592_1721CFT03427_0152CFF04554_0147CFF8240_0146CSG_1500CFV97608_0149CFTSP3_0150CFVI03293_0147CR44_00770CGRAC_1986CHAB381_1173CHH_0155CIG1485E_0161CIG2463D_0164CIG11343_0110CINS_0483UPTC4110_0569CONCH_0567UPTC3659_0596Cla_0561UPTC16701_0561UPTC16712_0567CD56_02815CPEL_0516CAQ16704_0594CSUB8521_0598CSUB8523_0585CUREO_0479CVOL_0498
13CP015575143991G10None179-101101bp upstream of CHH_0157158hypothetical proteinCj0249CJJ81176_0276A911_01200PJ16_01185PJ17_01225N135_00157N564_00234N565_00230N755_00285PJ18_00795PJ19_01185JJD26997_0249BN867_02240M635_05525UC78_0236C8J_0226CJ8421_01230RC25_00965CJM1cam_0231CJH_01250CJSA_0226ICDCCJ07001_230CJM1_0231MTVDSCj20_0225ERS445056_00240A0W68_01205H730_01540CJE0299CjjRM1285_0229AXW77_01190CjjRM3196_0237CjjRM3197_0237CJS3_0239A0W69_02080QZ67_00165N149_0241AB430_02715G157_07480VC76_01280AR446_06920ATE51_03858YSQ_08710YSS_08440YSU_07690A6K30_07545CCC13826_1699CCON33237_1686CCV52592_0632CFT03427_0157CFF04554_0152CFF8240_0150CSG_1550CFV97608_0154CFTSP3_0155CFVI03293_0152CR44_00795CHL_1715CHH_0157CIG1485E_0165CIG2463D_0168CIG11343_0114CINS_0136UPTC4110_0148CONCH_0144UPTC3659_0166Cla_0148UPTC16701_0156UPTC16712_0154CD56_00745CPEL_0152CAQ16704_0147CSUB8521_0158CSUB8523_0152CVOL_0141
14CP015575162787G9None374-1515bp upstream of CHH_0173649Cache sensor-containing MCP-domain signal transduction proteinBN867_01360CFT03427_0200
CFT03427_1274
CFT03427_1275
CFT03427_1651
CFT03427_0976
CFF04554_1326
CFF04554_1699
CFF04554_1327
CFF04554_0191
CFF8240_0190
CFF8240_1305
CFF8240_1307
CFF8240_1698
CSG_14540
CSG_2730
CFV97608_1824
CFV97608_0193
CFV97608_1450
CFTSP3_1029
CFTSP3_1337
CFTSP3_1338
CFTSP3_1716
CFTSP3_0198
CFVI03293_1721
CFVI03293_1350
CFVI03293_0191
CR44_01010
CR44_06450
CR44_08380
CR44_06445
CR44_04960
CHL_1146
CHL_1471
CHH_0178
CHH_1389
CHH_0173
CIG1485E_1593
CIG1485E_0122
CIG2463D_1790
CIG2463D_0125
15CP015575198380G10None278-1717bp upstream of CHH_021483hypothetical proteinCSG_18950CFV97608_1887CFVI03293_1784CHH_0214
16CP015575245390C993370CHH_0268670TonB-dependent receptorCHL_0424CHH_0268
17CP015575286952G883750CHH_031488No annotation data
18CP015575400858G883760CHH_044399hypothetical proteinCHH_0443
19CP015575446882G9None377-9999bp upstream of CHH_0490530MCP-domain signal transduction protein (DUF3365 domain)CFT03427_0567CFF04554_0557CFF8240_0562CSG_2080CFV97608_0608CFTSP3_0568CFVI03293_0560CR44_02890CHL_1523CHH_0490CIG1485E_0613CIG2463D_0613CIG11343_0542
20CP015575488164G9None230-318318bp upstream of CHH_05236001,4-dihydroxy-2-naphthoate octaprenyltransferaseCj0546CJJ81176_0571A911_02660PJ16_02710PJ17_02645N135_00595N564_00532N565_00580N755_00579PJ18_02715PJ19_02975JJD26997_1384BN867_05560M635_07075UC78_0530C8J_0507CJ8421_02670RC25_02655CJM1cam_0521CJH_02760CJSA_0513ICDCCJ07001_492CJM1_0521MTVDSCj20_0563ERS445056_00532A0W68_02665H730_03605CJE0650CjjRM1285_0517AXW77_02660CjjRM3196_0523CjjRM3197_0523CJS3_0536A0W69_03580QZ67_00556N149_0535AB430_04230G157_05935VC76_02845AR446_05375ATE51_03116YSQ_07125YSS_02530YSU_06135A6K30_06000CCC13826_1045CCON33237_0800CCV52592_0770CFT03427_0594CFF04554_0584CFF8240_0591CSG_2380CFV97608_0637CFTSP3_0595CFVI03293_0587CR44_03025CGRAC_1029CHAB381_0901CHL_1490CHH_0523CIG1485E_0648CIG2463D_0648CIG11343_0576CINS_0741UPTC4110_0786CONCH_0780UPTC3659_0883Cla_0766UPTC16701_0780UPTC16712_0784CD56_04185CPEL_0838CAQ16704_0774CSUB8521_0817CSUB8523_0904CUREO_0645CVOL_0758
21CP015575495034G9None378-145145bp upstream of CHH_052885No annotation dataCHH_0528
CHH_1196
22CP015575496847G8None379-1717bp upstream of CHH_0538375diguanylate cyclaseCFT03427_0609CFF04554_0599CFF8240_0606CSG_6340CFV97608_0652CFTSP3_0607CFVI03293_0602CR44_03095CHL_0576CHH_0538CIG1485E_0690CIG2463D_0691
23CP015575603983C993400CHH_0651234carboxy-S-adenosyl-L-methionine synthaseCj0590CJJ81176_0618A911_02880PJ16_02945PJ17_02860N135_00641N564_00578N565_00624N755_00623PJ18_02950PJ19_03210JJD26997_1078BN867_05990M635_07315UC78_0574C8J_0552CJ8421_02880RC25_02845CJM1cam_0567CJH_02995CJSA_0558ICDCCJ07001_538CJM1_0567MTVDSCj20_0610ERS445056_00577A0W68_02775H730_03825CJE0693CjjRM1285_0563AXW77_02890CjjRM3196_0569CjjRM3197_0569CJS3_0580A0W69_03820QZ67_00605N149_1222AB430_07990G157_02500VC76_06330AR446_01850ATE51_01042YSQ_02555YSS_06850YSU_02580A6K30_02520CCC13826_2026CCON33237_1306CCV52592_1562CFT03427_1086CFF04554_1136CFF8240_1109CSG_8860CFV97608_1161CFTSP3_1148CFVI03293_1106CR44_05525CGRAC_0902CHAB381_1013CHL_0686CHH_0651CIG1485E_1154CIG2463D_1245CIG11343_1108CINS_0656UPTC4110_0691CONCH_0685UPTC3659_0775Cla_0676UPTC16701_0682UPTC16712_0687CD56_03690CPEL_0744CAQ16704_0856CSUB8521_0721CSUB8523_0809CUREO_0799CVOL_0670
24CP015575617814C9103410CHH_0669353diguanylate cyclaseCSG_9080CHL_0706CHH_0669
25CP015575694131G993420CHH_0746759autotransporter domain proteinCHL_0780
CHL_0783
CHH_0746
CHH_1466
26CP015575694328C9None342-137137bp upstream of CHH_0746759autotransporter domain proteinCHL_0780
CHL_0783
CHH_0746
CHH_1466
27CP015575747011G983800CHH_0803153No annotation data
28CP015575759115G9None381-6262bp upstream of CHH_0814211outer membrane beta-barrel domain proteinCHH_0814CIG1485E_1015CIG2463D_1068
29CP015575812717G883480CHH_0868483membrane bound O-acyl transferase, MBOAT familyBN867_11440C8J_1093CJM1cam_1130CJM1_1130MTVDSCj20_1154CCV52592_0864CFT03427_1695CFF04554_1747CFF8240_1751CSG_18810CFV97608_1874CFTSP3_1760CFVI03293_1771CR44_08610CHL_0862CHH_0868CIG1485E_0946CIG2463D_0946CIG11343_0927UPTC4110_1217
UPTC4110_1214
CD56_06335
30CP015575834238G993820CHH_0890136No annotation dataCHH_0890
31CP015575864624G10None383-66bp upstream of CHH_0918101No annotation data
32CP015575996240G992330CHH_1055646type III restriction/modification system, mod subunitCFT03427_0957CR44_04865CHL_1051CHH_1055CIG11343_0145
CIG11343_0014
33CP0155751141284G8None378-136136bp upstream of CHH_1196146putative ComE family competence proteinCFT03427_0514
CFT03427_0599
CFF04554_0589
CFF04554_0502
CSG_1560
CSG_6330
CFV97608_0642
CFV97608_0554
CFTSP3_0600
CFTSP3_0515
CFVI03293_0592
CFVI03293_0506
CR44_03050
CR44_02615
CHL_1127CHH_0528
CHH_1196
CIG2463D_0173
34CP0155751148154C8None3847373bp downstream of CHH_1201418putative DUF945 domain proteinCHH_1201
35CP0155751193051C993850CHH_1247331two-component system, sensor histidine kinaseCj0793CJJ81176_0814A911_03845PJ16_04225PJ17_03850N135_00838N564_00772N565_00816N755_00813PJ18_03910PJ19_04490JJD26997_1218BN867_07940M635_08270UC78_0756C8J_0744CJ8421_03890RC25_03665CJM1cam_0769CJH_03980CJSA_0749ICDCCJ07001_765CJM1_0769MTVDSCj20_0802ERS445056_00777A0W68_04240H730_04855CJE0884CjjRM1285_0761AXW77_03865CjjRM3196_0816CjjRM3197_0816CJS3_0841A0W69_04870QZ67_00861CCC13826_0396CCON33237_1403CCV52592_0501CFT03427_1215CFF04554_1266CFF8240_1239CSG_13850CFV97608_1390CFTSP3_1277CFVI03293_1290CR44_06130CHL_1212CHH_1247CIG1485E_1268CIG2463D_1401CIG11343_1221CSUB8521_0632CSUB8523_0620
36CP0155751194559AT672360CHH_1249591hypothetical proteinCHH_1249CIG1485E_0796CIG2463D_0797
CIG2463D_0008
CIG2463D_0474
37CP0155751194814G883860CHH_1249108hypothetical protein
38CP0155751238694G9None354-1212bp upstream of CHH_1282126receiver domain proteinCFT03427_1246CFF04554_1296CFF8240_1269CSG_14160CFV97608_1420CFTSP3_1308CFVI03293_1320CR44_06290CHL_1325CHH_1282CIG1485E_1295CIG2463D_1428CIG11343_1246
39CP0155751253373G8None3873636bp downstream of CHH_130293No annotation dataCHH_1302
40CP0155751311553G883880CHH_136180No annotation data
41CP0155751339246G9None374-124124bp upstream of CHH_1389302No annotation dataCHL_1146CHH_1389
42CP0155751349540G883890CHH_1397739autotransporter domain proteinCHH_1397
43CP0155751418294G10None357-2727bp upstream of CHH_1463532flagellinCFT03427_1587
CFT03427_1588
CFF04554_1637
CFF04554_1638
CFF8240_1636CSG_17700
CSG_17690
CFV97608_1763
CFV97608_1762
CFTSP3_1652
CFTSP3_1653
CFVI03293_1659
CFVI03293_1660
CR44_08070
CR44_08065
CHL_1726
CCUG 27631 [0]
CHH_1463
CHH_1631
CHH_1632
CIG1485E_1540
CIG1485E_1539
CIG2463D_1736
CIG2463D_1737
CIG11343_1485CAQ16704_0162
44CP0155751427468G993420CHH_1466763autotransporter domain proteinCHL_0780
CHL_0783
CHH_0746
CHH_1466
CIG1485E_1223
45CP0155751427665C9None342-137137bp upstream of CHH_1466763autotransporter domain proteinCHL_0780
CHL_0783
CHH_0746
CHH_1466
CIG1485E_1223
46CP0155751470392G1010150CHH_1509424putative Zn-peptidase, M28 family (DUF2172 domain)Cj1295A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
47CP0155751547837G993320CHH_1590406ATP-grasp domain-containing proteinCJH_06665CHL_0231CHH_1590CIG1485E_1500CIG2463D_1693CIG11343_1444
48CP0155751554469G883330CHH_1597246WbqC family proteinCHL_0238CHH_1597
49CP0155751556177G993340CHH_1599340aminotransferase, DegT/DnrJ/EryC1/StrS familyCHL_0240CHH_1599CIG1485E_1504CIG2463D_1701CIG11343_1453
50CP0155751626060G9None3903333bp downstream of CHH_166566hypothetical proteinCHH_1665
51CP0155751654368G993210CHH_1700549phosphoglycerol transferaseCCV52592_0769CHL_0019CHH_1700CIG1485E_1607CIG2463D_1804
52CP0155751654377A12133210LMG 9260 [0]556No data, identified by scriptCCV52592_0769CHL_0019CHH_1700CIG1485E_1607CIG2463D_1804
53CP0155751683109G9None391-55bp upstream of CHH_1730581MCP-domain signal transduction proteinCHH_1730
54CP0155751716216C9None392-142142bp upstream of CHH_1765180hypothetical proteinCHH_1765
55CP0155751719041G993930CHH_176894hypothetical proteinCHH_1768