Gene group 167

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Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


#GroupNameLikely Function#PV in gene#Total PV#Total GenesC. jejuni
NCTC 11168
C. jejuni
81-176
C. jejuni
PT14
C. jejuni
00-0949
C. jejuni
00-1597
C. jejuni
00-2425
C. jejuni
00-2426
C. jejuni
00-2538
C. jejuni
00-2544
C. jejuni
00-6200
C. jejuni
01-1512
C. jejuni
269.97
C. jejuni
4031
C. jejuni
32488
C. jejuni
35925B2
C. jejuni
81116; NCTC 11828
C. jejuni
CG8421
C. jejuni
CJ677CC519
C. jejuni
CJM1cam
C. jejuni
F38011
C. jejuni
IA3902
C. jejuni
ICDCCJ07001
C. jejuni
M1
C. jejuni
MTVDSCj20
C. jejuni
NCTC11351
C. jejuni
OD267
C. jejuni
R14
C. jejuni
RM1221
C. jejuni
RM1285
C. jejuni
RM3194
C. jejuni
RM3196
C. jejuni
RM3197
C. jejuni
S3
C. jejuni
WP2202
C. jejuni
YH001
C. coli
15-537360
C. coli
BFR-CA-9557
C. coli
CVM N29710
C. coli
FB1
C. coli
HC2-48
C. coli
OR12
C. coli
RM1875
C. coli
RM4661
C. coli
RM5611
C. coli
YH501
C. concisus
13826
C. concisus
ATCC 33237
C. curvus
525.92
C. fetus
03-427
C. fetus
04/554
C. fetus
82-40
C. fetus
84-112
C. fetus
97/608
C. fetus
SP3
C. fetus
cfvi03/293
C. fetus
pet-3
C. gracilis
ATCC 33236
C. hominis
ATCC BAA-381
C. hyointestinalis
CCUG 27631
C. hyointestinalis
LMG 9260
C. iguaniorum
1485E
C. iguaniorum
2463D
C. iguaniorum
RM11343
C. insulaenigrae
NCTC 12927
C. lari
CCUG 22395
C. lari
LMG 11760
C. lari
NCTC 11845
C. lari
RM2100; ATCC BAA-1060D
C. lari
RM16701
C. lari
RM16712
C. lari
Slaughter Beach
C. peloridis
LMG 23910
C. sp.
RM16704
C. subantarcticus
LMG 24374
C. subantarcticus
LMG 24377
C. ureolyticus
RIGS 9880
C. volucris
LMG 24379
167murDUDP-N-acetylmuramoylalanine--D-glutamate ligase0976Cj0432c
CJ..6_0458
A911_02105
PJ16_02130
PJ17_02125
N135_00480
N564_00413
N565_01975
N755_00462
PJ18_02130
PJ19_02395
JJ..7_1512
BN.._04040
M635_06500
UC78_0416
C8J_0407
CJ.._02165
RC25_02140
CJ..m_0416
CJH_02185
CJSA_0404
IC..01_398
CJM1_0416
MT..0_0406
ER.._00429
A0.._02095
H730_02735
CJE0482
Cj..5_0408
AX.._02090
Cj..6_0418
Cj..7_0418
CJS3_0421
A0.._03010
QZ67_00437
N149_0430
AB.._03710
G157_06485
VC76_02270
AR.._05945
AT.._03348
YSQ_07700
YSS_01955
YSU_06710
A6.._06570
CC..6_0566
CC..7_1498
CC..2_1046
CF..7_1322
CF..4_1374
CF..0_1358
CSG_14960
CF..8_1497
CF..3_1385
CF..3_1397
CR44_06690
CH..1_1595
CHL_0518
CHH_1368
CI..E_1368
CI..D_1559
CI..3_1315
CINS_0263
UP..0_0272
CONCH_0268
UP..9_0286
Cla_0266
UP..1_0273
UP..2_0275
CD56_01340
CPEL_0278
CA..4_0277
CS..1_0285
CS..3_0279
CUREO_1551
CVOL_0263

Annotated functions

Function#Occuringscore
UDP-N-acetylmuramoylalanine--D-glutamate ligase51.43
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase41.14

Subgroups

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
N149_0430
AB.._03710
AT.._03348
YSQ_07700
1
G157_06485
VC76_02270
2
AR.._05945
YSU_06710
3
A6.._06570

Predicted On/Off state

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
N149_0430
AB.._03710
AT.._03348
YSQ_07700
1
G157_06485
VC76_02270
2
AR.._05945
YSU_06710
3
A6.._06570

Neighbour joining tree

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UPGMA tree

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15-537360

15-537360 : N149_0430 [tract entry] [top]

Function: UDP-N-acetylmuramoylalanine--D-glutamate ligase
+0 MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDEWGNHLLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]

BFR-CA-9557

BFR-CA-9557 : AB430_03710 [tract entry] [top]

Function: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
+0 MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDEWGNHLLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]

CVM N29710

CVM N29710 : G157_06485 [tract entry] [top]

Function: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
+0 MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDEWGNHLLNPKEFDEKVSELEIPSPGFSPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]

FB1

FB1 : VC76_02270 [tract entry] [top]

Function: UDP-N-acetylmuramoylalanine--D-glutamate ligase
+0 MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDEWGNHLLNPKEFDEKVSELEIPSPGFSPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]

HC2-48

HC2-48 : AR446_05945 [tract entry] [top]

Function: UDP-N-acetylmuramoylalanine--D-glutamate ligase
+0 MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDKWGNHLLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]

OR12

OR12 : ATE51_03348 [tract entry] [top]

Function: UDP-N-acetylmuramoylalanine--D-glutamate ligase
+0 MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDEWGNHLLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]

RM1875

RM1875 : YSQ_07700 [tract entry] [top]

Function: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
+0 MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDEWGNHLLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]

RM5611

RM5611 : YSU_06710 [tract entry] [top]

Function: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
+0 MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDKWGNHLLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]

YH501

YH501 : A6K30_06570 [tract entry] [top]

Function: UDP-N-acetylmuramoylalanine--D-glutamate ligase
+0 MRISLFGYGKTTRAIAKNLANQFGPFDIYDDHFQEKSKDEWGNHLLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNG
+100 KTTTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALLPISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYA
+200 KTPTKAYIISYKDEFDLAQKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGRLWVNDTKATNENAVMAALNRYKNK
+300 KIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGLSTQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRGEKFKECVG
+400 KI

[show detailed alignment]