Gene group 446

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Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


#GroupNameLikely Function#PV in gene#Total PV#Total GenesC. jejuni
NCTC 11168
C. jejuni
81-176
C. jejuni
PT14
C. jejuni
00-0949
C. jejuni
00-1597
C. jejuni
00-2425
C. jejuni
00-2426
C. jejuni
00-2538
C. jejuni
00-2544
C. jejuni
00-6200
C. jejuni
01-1512
C. jejuni
269.97
C. jejuni
4031
C. jejuni
32488
C. jejuni
35925B2
C. jejuni
81116; NCTC 11828
C. jejuni
CG8421
C. jejuni
CJ677CC519
C. jejuni
CJM1cam
C. jejuni
F38011
C. jejuni
IA3902
C. jejuni
ICDCCJ07001
C. jejuni
M1
C. jejuni
MTVDSCj20
C. jejuni
NCTC11351
C. jejuni
OD267
C. jejuni
R14
C. jejuni
RM1221
C. jejuni
RM1285
C. jejuni
RM3194
C. jejuni
RM3196
C. jejuni
RM3197
C. jejuni
S3
C. jejuni
WP2202
C. jejuni
YH001
C. coli
15-537360
C. coli
BFR-CA-9557
C. coli
CVM N29710
C. coli
FB1
C. coli
HC2-48
C. coli
OR12
C. coli
RM1875
C. coli
RM4661
C. coli
RM5611
C. coli
YH501
C. concisus
13826
C. concisus
ATCC 33237
C. curvus
525.92
C. fetus
03-427
C. fetus
04/554
C. fetus
82-40
C. fetus
84-112
C. fetus
97/608
C. fetus
SP3
C. fetus
cfvi03/293
C. fetus
pet-3
C. gracilis
ATCC 33236
C. hominis
ATCC BAA-381
C. hyointestinalis
CCUG 27631
C. hyointestinalis
LMG 9260
C. iguaniorum
1485E
C. iguaniorum
2463D
C. iguaniorum
RM11343
C. insulaenigrae
NCTC 12927
C. lari
CCUG 22395
C. lari
LMG 11760
C. lari
NCTC 11845
C. lari
RM2100; ATCC BAA-1060D
C. lari
RM16701
C. lari
RM16712
C. lari
Slaughter Beach
C. peloridis
LMG 23910
C. sp.
RM16704
C. subantarcticus
LMG 24374
C. subantarcticus
LMG 24377
C. ureolyticus
RIGS 9880
C. volucris
LMG 24379
446UPTC4110_1471MCP-domain signal transduction protein0711
UP..0_1471
CONCH_1442
UP..9_1708
Cla_1499
UP..1_1466
UP..2_1501
CD56_07595
CPEL_1598
CA..4_1501
CS..1_1703
CS..3_1804

Annotated functions

Function#Occuringscore
MCP-domain signal transduction protein41.50
No annotation data20.00
hypothetical protein10.00

Subgroups

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
UP..0_1471
UP..9_1708
UP..1_1466
CD56_07595
CPEL_1598
CA..4_1501
1
UP..2_1501

Predicted On/Off state

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
UP..0_1471
UP..9_1708
UP..1_1466
CD56_07595
CPEL_1598
CA..4_1501
1
UP..2_1501

CCUG 22395

CCUG 22395 : UPTC4110_1471 [tract entry] [top]

Function: No annotation data
+0 MRNWSLGAKIVAIAIITVVLILSILSVLIINRSTTILNTQIENTLTASVHRYGNQAEASIKSLFVSTIGTQRTLNNLISEGAINPKRIENILGEAVDANR
+100 DIAYGYYYLQDGTMYKNLDVEEKYFTNNNEFMVLMRDSDINNAGGMQTLAASEEIAKTRAVKNLMNGNKLYFGEPRWYNIHGNKFLGLNVAAPITDKKGK
+200 AIGVVGMLFDLKPIATFLNDSSRSIYQGARRILIASNGVIATHPNAEFVTKKISDVNKNAAFIVDLQKTAYAGPINYIADDGSEYHGAIRVFEI

No BLAST hits


NCTC 11845

NCTC 11845 : UPTC3659_1708 [tract entry] [top]

Function: MCP-domain signal transduction protein
+0 MWRKMKLSTKIIVIMVFAVVVSLSGLSLLIVKKSQETLQDQTSKILLTSVFRYTNLAESAIKSFFVSAIGTQKIFNTLLEEGSISEKRIENILGETIDAN
+100 NVIAYGYYYLKDGSQYRALGVDDKYFTDKSEFMVLMRDNETQKPGGVATEQATSELSSLRGINYIMQGNKLYFGDPRWFNINGNKIFGSNIAIPLMDKKG
+200 KILGVLGMIFDMQVLANDFNDPSRTLYEGDRRILIANNGIVATHPNADFVTKNLLSVNKNATNIIEASKTVQTKEIDYTADDGQKYHGAIRSFEVWPGTN
+300 IIWSMLSIAPEKAVYTPIADLRNTIVFSGLVAVILIVLVLGYSMKSIVSSRVERLQNHLTKFFRYLNHEVSTVEVLTPRYNDEIGKMASMVNENVQYIHT
+400 CLEKDDITVQNILEVSCDIEKGHFTQRIEANPVNPKLIELKEVLNKMLDDMQKKIGKDLNDIERVFASFQSLDFSDKLDNAEGEIEKSLNAVGAEIRKML
+500 QTSLNQGEVLQQKADSLKESVNQLNDGAQKQADSLQESAAAVEEMSASMNAVAARTEEVIKQSSDIKDVTDVIRDIADQINLLALNAAIEAARAGEHGRG
+600 FAVVADEVRNLAERTQKSLGEIEANTNILVQSINEMGESIKEQALGISQINQSVSVIDGLTKENSQIAHATNSVANEVDLMSAEIVADVRKKKF

[show detailed alignment]

RM16701

RM16701 : UPTC16701_1466 [tract entry] [top]

Function: MCP-domain signal transduction protein
+0 MMWKQLKLSTKVIAIVVATVVLILSSLSLLIIQKSTNTLTQQIDKTLVTSVFRYTNSAEAAIKSFFISAIGTQKIFNTLLEEGPISEKRIENILGETIDA
+100 SSTIAYGYYYLKDGSIYKNMGLDNKYFTSNNEFMVLMKDSDVLKPGGMKTIQASEDLLSLRGIKHIMGGDKMYFGEPRWFNINGEKIFGSNIATPLVDKN
+200 GKVLGVLGMIFDMKVLANDFNDPSRSVFEGDRRILLSNGGVIATHPNEDFVTRKITDVNKNATNVIEVTQKAQVKSIDYIADDGSKYHGAIRVFEVWPNT
+300 GILWSMLAVAPQKVIDAPIAELRNVILISGLVAIVIIILVLGISMKTIITNRIARLQEHMMKFFKYLNHEISTVEVVKPRYNDEIGKMAGVINDNVQYIH
+400 TCLEKDDITVQNILEVSCEIEKGYFTQRIEANPVNPKLVELKEVLNKMLDDMQMKIGKDLNEIERVFASFQNLDFSDKLDNAEGEIEKSLNAVGAEIRKM
+500 LQASLSQGEMLQTKADALKESVLKLNDGAQKQADSLQESAAAVEEMSASMNAVAARTEEVIKQSSDIKDVTDVIRDIADQINLLALNAAIEAARAGEHGR
+600 GFAVVADEVRNLAERTQKSLGEIEANTNILVQSINEMGESIKEQALGISQINQSVSVIDGLTKENSQIAHATNSVANEVDSMSADIVAEVRRKKF

[show detailed alignment]

RM16712

RM16712 : UPTC16712_1501 [tract entry] [top]

Function: No annotation data
+0 LESCAKIVAIAIITVVLILSILSVLIINRSITILNTQIENTLTASVHRYGNQTETSIKSLFVSTIGTQRTLNNLILEGAINPKRIENILGEAVDANRDIA
+100 YGYYYLQDGTMYKNLDVKEKYFTNNNEFMVLMRDSDINNAGGMQILAASEEIAKTRAVKNLMNGNKLYFGEPRWYNIHGNKFLGLNVAAPITDKKGKAIG
+200 CCRYAF

No BLAST hits


Slaughter Beach

Slaughter Beach : CD56_07595 [tract entry] [top]

Function: hypothetical protein
+0 MWKQLKLSTKVIAIVVVTVVLILASLSLLIVQKSTNTLTQQIDKTLVTSVFRYTNSAEAAIKSFFISAIGTQKIFNTLLEEGPISEKRIENILGETIDAS
+100 STIAYGYYYLKDGSTYKNMGLDNKYFTSKNEFMVLMKDSDVLKPGGMRTLQASSDIVQLRGIGHIMGGDKMYFGEPRWFNINGEKIFGSNIAVPLMDKKG
+200 KVLGVLGMIFDMKVLANDFNDPSRSVFEGDRRILLSNGGVIATHPNEDFVTRKITDVNKNATNVIEVTQKAQVKSIDYIADDGSKYHGAIRVFEVWPNTG
+300 ILWSMLAVAPQKVIIAPIAELRNVILISGLVAIVIIILVLGISMKTIITNRIARLQEHMMKFFKYLNHEISTVEVVKPRYNDEIGKMAGVINDNVQYIHT
+400 CLEKDDITVQNILEVSCEIEKGYFTQRIEANPVNPKLVELKEVLNKMLDDMQMKIGKDLNEIERVFASFQNLDFSDKLDNAEGEIEKSLNAVGAEIRKML
+500 QASLSQGEMLQTKADALKESVLKLNDGAQKQADSLQESAAAVEEMSASMNAVAARTEEVIKQSSDIKDVTDVIRDIADQINLLALNAAIEAARAGEHGRG
+600 FAVVADEVRNLAERTQKSLGEIEANTNILVQSINEMGESIKEQALGISQINQSVSVIDGLTKENSQIAHATNSVANEVDSMSADIVAEVRRKKF

[show detailed alignment]

LMG 23910

LMG 23910 : CPEL_1598 [tract entry] [top]

Function: MCP-domain signal transduction protein
+0 MLRNLKLSTKVIAIVVFTVVVILGGISLLIIQRSTETLNEQINKTLMTSVFRYTNSAEAAIKSFFISAIGTQKIFNTLLEEGPISEKRIENILGETIDAS
+100 STIAYGYYYLKDGTAYKNLGVDDKYFINGKEFMVLMKDKDVKEAGGMTTIQASSDIASLRGVEHIMKGDKLYFGEPRWFDVNGEKIFGSNIATPLIDKNG
+200 KVLGVLGMIFDMKILANDFNDPSRSVYQGDRRILLSNGGVIATHPNADFVTKKITDINPNATNVLEATKEIQVKGIDYVSDKGDDYHGAIRVFEVWPNTG
+300 IYWSMLAIAPTKTIYEPISTLRNLILISSLIGVVVIIIVLSFAMKSIVTIRVQRLQNHLMKFFKYLNHEIPNIEELIPRYNDEIGKMAGAINDNVQYIQA
+400 NLEKDEITVKNILDVSHDIEKGHFTQRIETTPVNPKLIELKEVLNKMLEDMQRKIGKDLNEIERVFASFQNLDFSDKLENAEGEIEKSINAVGVEIKKML
+500 QASLKQGELLQTKADALKESVLQLNDGAQRQADSLQESAAAVEEMSASMNAVAARTEEVIKQSSDIKEVTDVIRDIADQINLLALNAAIEAARAGEHGRG
+600 FAVVADEVRNLAERTQKSLGEIEANTNILVQSINEMGESIKEQALGISQINQAVSVIDGLTKENSQIAHATNSVANEVDVMSADIVAEVRRKKF

[show detailed alignment]

RM16704

RM16704 : CAQ16704_1501 [tract entry] [top]

Function: MCP-domain signal transduction protein
+0 MFRNLKLGTKVIAIIVITVIVVLGCVSFLIIQKSTDTLSNQINKTLVTSVFRYTNTAEAALKSFFISAIGTQKIFNTLLEEGPISEKRIQNILGETIDAS
+100 PNIAYGYYYLKDGSFYRNSGLSDKYFVNQNEFMVLMNDGDVKNSGGMKVLQASPDITSLRAVNHIMKGDVLYFGIPDFFNINGITFFGTSIAVPLLNKEG
+200 KTVGVLGLIFDMQNLANDFNDASRSVYDGDRRILLSTGGLIATHPNADFVSKKLIDINKNATNIMELLDKPQVKEIDYISDDGSKYHGAIRVFEVWPNTG
+300 ILWAMLAVAPEKNILIPIAELRNIILISGVVAIFVIVLVLSYSMKSIVSVRISRLQEHLMTFFRYLNHEVSSVEVLTPRYNDEIGKMASMVNENIQNIHT
+400 SLEKDEITVQNILEVSSNIEKGYFTQRVKTEPVNPKLIELKEVLNKMLDDMQMKIGKDLNEIERVFTSFQNLDFSDKLANAEGRIEKSLNAVGEEIKKML
+500 QASLNQGEMLQTKADSLKESVLKLNEGAQKQADSLQESAAAVEEMSASMNAVAARTEEVIKQSSDIKDVTDVIRDIADQINLLALNAAIEAARAGEHGRG
+600 FAVVADEVRKLAERTQKSLGEIEANTNILVQSINEMGESIKEQALGISQINQSVSVIDSLTKENSQIAHATNSVANEVDVMSADIVADVRRKKF

[show detailed alignment]