Analysis of poly-G tracts in CJ677CC519


Strain name: CJ677CC519
Filepath: ../polyG/campy.new\614601-972471629.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP0104714130G101000RC25_000101247restriction endonucleaseCj0031CJJ81176_0068A911_00150PJ16_00180PJ17_00185N135_00036N564_00030N565_00030N755_00030PJ18_00175PJ19_00180JJD26997_0043BN867_00300UC78_0040C8J_0034CJ8421_00165RC25_00010CJM1cam_0039CJH_00185CJSA_0032ICDCCJ07001_36CJM1_0039MTVDSCj20_0039ERS445056_00036A0W68_00175H730_00165CJE0031CjjRM1285_0039AXW77_00175CjjRM3196_0040CjjRM3197_0040CJS3_0031A0W69_01050QZ67_00037N149_0037AB430_01470G157_00150VC76_00185AR446_08190ATE51_00072YSQ_00185YSS_00195YSU_00200A6K30_00205CINS_0480UPTC4110_1431CONCH_1400UPTC3659_1667Cla_1457UPTC16701_1425UPTC16712_1445CD56_07380CPEL_1557CSUB8521_1649CSUB8523_1744CVOL_1446
1CP010471443058C10None122226226bp downstream of RC25_02455309ferrochelataseCj0503cCJJ81176_0531A911_02455PJ16_02510PJ17_02445N135_00553N564_00490N565_00538N755_00537PJ18_02505PJ19_02775JJD26997_1433BN867_05160M635_06880UC78_0490C8J_0467CJ8421_02470RC25_02455CJM1cam_0481CJH_02555CJSA_0473ICDCCJ07001_454CJM1_0481MTVDSCj20_0523ERS445056_00492A0W68_02465H730_03405CJE0610CjjRM1285_0477AXW77_02460CjjRM3196_0483CjjRM3197_0483CJS3_0496A0W69_03380QZ67_00513N149_0494AB430_04025G157_06140VC76_02640AR446_05580ATE51_03198YSQ_07330YSS_02325YSU_06340A6K30_06205CCC13826_0053CCON33237_1236CCV52592_0688CFT03427_0692CFF04554_0710CFF8240_0703CSG_12920CFV97608_0767CFTSP3_0751CFVI03293_0669CR44_03520CHAB381_0988CHL_1091CHH_1095CIG1485E_0754CIG2463D_0755CIG11343_0718CINS_1033UPTC4110_1048CONCH_1023UPTC3659_1282Cla_1069UPTC16701_1039UPTC16712_1069CD56_05495CPEL_1173CAQ16704_1058CSUB8521_0891
CSUB8521_1234
CSUB8523_1049
CSUB8523_1340
CVOL_1043
2CP010471503450G10None9-99bp upstream of RC25_02740460No annotation data
3CP010471587232C99110RC25_03155463invasion proteinCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575
4CP010471628009G991230RC25_03370100No annotation data
5CP010471634463G1111270RC25_03405146No annotation dataCj0735CJJ81176_0758A911_03590PJ16_03950PJ17_03565N135_00784N564_00720N565_00765N755_00762PJ18_03635PJ19_04215RC25_03405CJH_03695CJSA_0699ERS445056_00720A0W68_03465H730_04585CJE0835AXW77_03600CJS3_0787A0W69_04510QZ67_00749
6CP010471641553C10None122626bp downstream of RC25_03425503No annotation dataCj0742CJJ81176_0764PJ16_03985PJ17_03590N135_02060N564_02000N565_02090N755_02115PJ18_03670PJ19_04250BN867_07560M635_08925UC78_0931
UC78_0713
C8J_0706RC25_03425CJM1cam_0723CJSA_0706ICDCCJ07001_713CJM1_0723MTVDSCj20_0759ERS445056_00730A0W68_03500CjjRM1285_0708AXW77_03620CjjRM3196_0763CjjRM3197_0763A0W69_04545QZ67_00815
7CP010471858168C9None124-342342bp upstream of RC25_04535124acyl-CoA thioester hydrolaseCj0965cCJJ81176_0988A911_04665PJ16_05075PJ17_04705N135_01006N564_00935N565_00982N755_00974PJ18_04780PJ19_05340JJD26997_0817BN867_09570M635_00315UC78_0927C8J_0907CJ8421_04780RC25_04535CJM1cam_0943CJH_04855CJSA_0910ICDCCJ07001_930CJM1_0943MTVDSCj20_0973ERS445056_00949A0W68_05065H730_05710CJE1045CjjRM1285_0991AXW77_04720CjjRM3196_0990CjjRM3197_0990CJS3_1009A0W69_05735QZ67_01043N149_0804AB430_05625G157_04590VC76_04200AR446_03970ATE51_01884YSQ_05065YSS_04380YSU_04715A6K30_04630CINS_0477UPTC4110_0563CONCH_0562UPTC3659_0589Cla_0557UPTC16701_0554UPTC16712_0561CD56_02785CPEL_0511CAQ16704_0588CSUB8521_0593CSUB8523_0580CVOL_0492
8CP010471858368G10None104-308308bp upstream of RC25_04540754hypothetical proteinCj0967CJJ81176_0527
CJJ81176_1741
A911_04670PJ16_05080N135_01007N564_00936N565_00983N755_00975PJ18_04785PJ19_05345BN867_09580
BN867_05110
M635_08855UC78_0928C8J_0908
C8J_0463
CJ8421_04795RC25_04540CJM1cam_0477
CJM1cam_0944
CJH_04870CJSA_0911ICDCCJ07001_933CJM1_0477
CJM1_0944
MTVDSCj20_0520
MTVDSCj20_0974
ERS445056_00950A0W68_05070H730_05735CJE1047CjjRM1285_0993
CjjRM1285_0473
AXW77_04735CjjRM3196_0991CjjRM3197_0991A0W69_05740QZ67_01044CD56_03810
CD56_06005
9CP0104711023611G98960RC25_05370149dTDP-6-deoxy-3,4-keto-hexulose isomeraseBN867_11290C8J_1078CJ8421_05655RC25_05370CJM1cam_1116CJM1_1116MTVDSCj20_1141AR446_02560YSU_03280UPTC16701_1225
10CP0104711024414G1011970RC25_05380427dTDP-6-deoxy-3,4-keto-hexulose isomeraseC8J_1080RC25_05380MTVDSCj20_1144
MTVDSCj20_1143
11CP0104711181438G109150RC25_06170445No annotation dataCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
12CP0104711186464G8980RC25_06195403No annotation dataCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
13CP0104711189135G1091100RC25_06210188acetyltransferaseCj1313CJJ81176_1330A911_06385PJ16_07315PJ17_06955N135_01402N564_01331N565_01370N755_01366PJ18_06760PJ19_07315JJD26997_0400BN867_13020M635_02255UC78_1262C8J_1246CJ8421_06540RC25_06210CJM1cam_1285CJH_06645CJSA_1251ICDCCJ07001_1259CJM1_1285MTVDSCj20_1308ERS445056_01425A0W68_07070H730_07515CJE1508CjjRM1285_1327AXW77_06465CjjRM3196_1330CjjRM3197_1330CJS3_1413A0W69_07750QZ67_01448N149_1276AB430_08230G157_02240VC76_06605AR446_01585ATE51_00938YSQ_02280YSS_07135YSU_02295A6K30_02260CINS_1277UPTC4110_1301CONCH_1276UPTC3659_1537UPTC16701_1295UPTC16712_1317CAQ16704_1327CSUB8521_1504
14CP0104711203307G9980RC25_06265416carbonic anyhydraseCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0407
JJD26997_0368
BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CCC13826_0771CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_0797UPTC16712_0815CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594CVOL_1289
15CP0104711223625G10None46-4242bp upstream of RC25_06365129No annotation dataPJ17_07195CJ8421_06840RC25_06365CJH_06900H730_07765CJE1552AXW77_06710CJS3_1458
16CP0104711280639G109190RC25_06635258No annotation dataCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
17CP0104711283356G77570RC25_066501241sugar transferasePJ18_07325M635_02875RC25_06650AXW77_07100QZ67_01570YSQ_01715CINS_0287
18CP0104711288832G99560RC25_06665344GDP-mannose 4,6-dehydrataseCJJ81176_1426PJ18_07310JJD26997_1763BN867_14030M635_02860UC78_1367CJ8421_07175RC25_06665CJH_07515ICDCCJ07001_1357ERS445056_01542A0W68_07465H730_08150CJE1611AXW77_07085CjjRM3196_1425CjjRM3197_1425CJS3_1519A0W69_08300QZ67_01567AB430_08780YSQ_01730CINS_0290UPTC3659_0325UPTC16701_0315UPTC16712_0313CAQ16704_0314CSUB8521_0326
19CP0104711293398G99920RC25_06690400SAM-dependent methlyltransferaseJJD26997_1809M635_02835RC25_06690ERS445056_01581A0W68_03540H730_08095CjjRM1285_1456AXW77_07060A0W69_04585
20CP0104711293751G1010350RC25_0669535No annotation data
21CP0104711300230G99900RC25_06740378SAM-dependent methlyltransferaseJJD26997_1799M635_02790RC25_06740ERS445056_01573A0W68_03530CjjRM1285_1450AXW77_07010A0W69_04575CINS_0299Cla_0309CSUB8521_0340CSUB8523_0323
22CP0104711304256G99360RC25_06760176No annotation dataJJD26997_1797RC25_06760CJM1cam_1374CJM1_1374MTVDSCj20_1393AXW77_07210
AXW77_07000
AB430_08720
23CP0104711304510G99200RC25_06765663hypothetical proteinCJJ81176_1421
CJJ81176_1435
A911_06907
A911_06918
M635_02880CJ8421_07220
CJ8421_07150
RC25_06765CJSA_1352
CJSA_1363
ERS445056_01550A0W68_03560H730_08070
H730_08075
AXW77_07105A0W69_04605CSUB8523_0313