Analysis of poly-G tracts in 15-537360


Strain name: 15-537360
Filepath: ../polyG/campy.new\79301-556029419.gb
Species: C. coli

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00670265018G101010N149_0049268Hemerythrin-like iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
1CP006702436103C9None1671313bp downstream of N149_0430402UDP-N-acetylmuramoylalanine--D-glutamate ligaseCj0432cCJJ81176_0458A911_02105PJ16_02130PJ17_02125N135_00480N564_00413N565_01975N755_00462PJ18_02130PJ19_02395JJD26997_1512BN867_04040M635_06500UC78_0416C8J_0407CJ8421_02165RC25_02140CJM1cam_0416CJH_02185CJSA_0404ICDCCJ07001_398CJM1_0416MTVDSCj20_0406ERS445056_00429A0W68_02095H730_02735CJE0482CjjRM1285_0408AXW77_02090CjjRM3196_0418CjjRM3197_0418CJS3_0421A0W69_03010QZ67_00437N149_0430AB430_03710G157_06485VC76_02270AR446_05945ATE51_03348YSQ_07700YSS_01955YSU_06710A6K30_06570CCC13826_0566CCON33237_1498CCV52592_1046CFT03427_1322CFF04554_1374CFF8240_1358CSG_14960CFV97608_1497CFTSP3_1385CFVI03293_1397CR44_06690CHAB381_1595CHL_0518CHH_1368CIG1485E_1368CIG2463D_1559CIG11343_1315CINS_0263UPTC4110_0272CONCH_0268UPTC3659_0286Cla_0266UPTC16701_0273UPTC16712_0275CD56_01340CPEL_0278CAQ16704_0277CSUB8521_0285CSUB8523_0279CUREO_1551CVOL_0263
2CP006702597237G10980N149_0590409No annotation dataCj0617CJJ81176_0646A911_03015PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_1051M635_07445CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910H730_03970CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_04500AR446_05110ATE51_02354YSQ_06210YSS_02830YSU_05855A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
3CP006702842598G10None168-3434bp upstream of N149_0842144Hypothetical proteinN149_0842G157_04435A6K30_04440
4CP006702990717G89430N149_09871364No annotation dataCj1051cA911_05085PJ16_05500PJ17_05405N135_01087N564_01019N565_01064N755_01057PJ18_05205PJ19_05765BN867_10440M635_00715
M635_00965
C8J_0992CJ8421_05225CJM1cam_1030CJH_05290CJSA_0994ICDCCJ07001_1013CJM1_1030MTVDSCj20_1057A0W68_05495H730_06230CJE1195AXW77_05180CjjRM3196_1070CjjRM3197_1070CJS3_1100A0W69_06450QZ67_01124N149_0987AB430_06540G157_03715VC76_05120AR446_03050ATE51_01514YSQ_03745YSS_05685YSU_03790A6K30_03710
5CP0067021001022G881690N149_0993654Phosphoglycerol transferaseBN867_10490CJ8421_05245N149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CINS_1119CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
6CP0067021181642G109170015-537360 [0]338No data, identified by script15-537360 [0]AB430_07445FB1 [0]AR446_02110RM4661 [0]YSU_02825A6K30_02755
7CP0067021181652A10None170-1010bp upstream of N149_1175331No annotation data
8CP0067021255505G1010150N149_1256435Hypothetical proteinCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
9CP0067021263484G9980N149_1264124No annotation data
10CP0067021264722G11None8-2121bp upstream of N149_1265205Hypothetical proteinCJJ81176_1321CJ8421_06495CJE1495CJS3_1400N149_1265VC76_06540YSQ_02345
11CP0067021268078G99290N149_1269239formyl transferase domain proteinCJJ81176_1325PJ17_06920JJD26997_0414C8J_1241RC25_06185CJM1cam_1280ICDCCJ07001_1253CJM1_1280MTVDSCj20_1304ERS445056_01420CJE1498CjjRM3196_1322CjjRM3197_1322CJS3_1403N149_1269G157_02280VC76_06560AR446_01620YSQ_02320YSU_02350A6K30_02295CVOL_1294
12CP0067021270615G109450N149_12723423-oxoacyl-[acyl-carrier-protein] synthase, KASIIIPJ17_06935N149_1272G157_02260VC76_06585AR446_01605YSQ_02305YSS_07110YSU_02320A6K30_02280Cla_1314CD56_06750
13CP0067021278237G99170N149_1281648Motility accessory factorCj1318
Cj1333
Cj1335
CJJ81176_1336A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07050
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ18_06785
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02360
M635_02285
M635_02370
UC78_1278
UC78_1267
UC78_1276
C8J_1253CJ8421_06665RC25_06245CJM1cam_1292CJH_06700CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265
ICDCCJ07001_1268
CJM1_1292MTVDSCj20_1315ERS445056_01444
ERS445056_01446
ERS445056_01430
A0W68_07165H730_07620
H730_07630
CJE1524
CJE1522
CjjRM1285_1333AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1337
CjjRM3196_1335
CjjRM3197_1337
CjjRM3197_1335
CJS3_1430
CJS3_1427
A0W69_07845QZ67_01453
QZ67_01469
QZ67_01471
N149_1281
N149_1298
N149_1296
AB430_08255
AB430_08325
AB430_08340
VC76_06695AR446_01555
AR446_01560
AR446_01545
ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02185
YSQ_02175
YSQ_02255
YSS_07230
YSS_07245
YSS_07160
YSS_07240
YSU_02220
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
A6K30_02155
CINS_1188CONCH_0163CSUB8521_0178
CSUB8521_0235
CSUB8523_0172CVOL_0220
CVOL_1306
CVOL_1208
14CP0067021282193G10None18-4646bp upstream of N149_1285169Putative transferaseCj1321A911_06420PJ16_07355PJ17_06995N135_01409N564_02230N565_02320N755_02380PJ19_07355CJ8421_06595A0W68_07105AXW77_06510
AXW77_06505
A0W69_07785N149_1285AB430_08270ATE51_00922YSS_07180
YSS_07175
A6K30_02220
A6K30_02215
15CP0067021285035G9940N149_1289224Hypothetical proteinCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_07375
PJ19_00860
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220YSU_02255CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451
16CP0067021306724G9980N149_1304416Hypothetical proteinCj1342cCJJ81176_1341A911_03015
A911_06515
PJ16_03080
PJ16_07450
PJ17_02995
PJ17_07090
N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445
PJ19_03345
JJD26997_0407
JJD26997_0368
BN867_13260M635_07445
M635_02400
UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277
CJSA_0585
ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215
A0W68_02910
H730_07660CJE0720
CJE1531
CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436
CJS3_0607
A0W69_07875
A0W69_03955
N149_0590
N149_1304
AB430_08370
AB430_04500
G157_02115VC76_06720AR446_01515ATE51_00880
ATE51_02354
YSQ_02145YSS_07275YSU_02180A6K30_02125CCON33237_0365CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_0797CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
17CP0067021327607G10None98-4242bp upstream of N149_1324755Hypothetical proteinBN867_13460UC78_1307C8J_1278CJM1cam_1321CJH_06895ICDCCJ07001_1296CJM1_1321MTVDSCj20_1341ERS445056_01472AXW77_06700CjjRM3196_1363CjjRM3197_1363N149_1324AB430_08465G157_02025VC76_06820AR446_01420ATE51_00842YSQ_02050YSS_07370YSU_02085A6K30_02030
18CP0067021380437G109360N149_1376606CMP-N-acetylneuraminate-beta-galactosamide- alpha-2,3-sialyltransferaseICDCCJ07001_1352N149_1376G157_01745
19CP0067021383778G11111710N149_1379333Hypothetical proteinN149_1379
N149_1378
ATE51_01314
20CP0067021460938G9None172-5151bp upstream of N149_1457746Hypothetical proteinN149_1457AB430_00255AR446_00760YSQ_01360YSU_01375CINS_0952UPTC3659_1199CPEL_1091CAQ16704_0970CSUB8521_1152CSUB8523_1258