Analysis of poly-G tracts in 04/554


Strain name: 04/554
Filepath: ../polyG/campy.new\213431-691214669.gb
Species: C. fetus

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP008808465456C992360CFF04554_04751269autotransporter domain proteinCFF04554_0475CFF8240_0465CSG_5400CFV97608_0520CFVI03293_0466
1CP008808489860G992580CFF04554_04851108glycosyltransferase, family 1CFF04554_0485
2CP008808875141G992590CFF04554_0871253putative type II secretion system proteinCFT03427_0866CFF04554_0871CFF8240_0865CSG_11240CFV97608_0930CFTSP3_0921CFVI03293_0884CR44_04400
3CP008808891865G992310CFF04554_0883522SAM-dependent methyltransferaseCFT03427_0876CFF04554_0883CFF8240_0879CSG_11100CFV97608_0943CFTSP3_0931CFVI03293_0872CR44_04455
4CP008808958621AG6None26033bp downstream of CFF04554_0951128putative fluoride ion transporterCj0517CJJ81176_0545A911_02525PJ18_02575M635_06950CJH_02625A0W68_02535A0W69_03450QZ67_00528N149_0509G157_06065VC76_02715AR446_05505ATE51_03168YSQ_07255YSS_02400YSU_06265A6K30_06130CFT03427_0943CFF04554_0951CFF8240_0950CSG_10410CFV97608_1011CFTSP3_0998CFVI03293_0804CR44_04790CHH_1021CIG1485E_1008CIG2463D_1061CIG11343_0973UPTC4110_0722CONCH_0716UPTC3659_0811Cla_0704UPTC16701_0718UPTC16712_0719CD56_03870CPEL_0773CSUB8521_0752CSUB8523_0840
5CP008808969014G882320CFF04554_0962327No annotation dataCFT03427_0951CFF04554_0962CFF8240_0963CSG_10300CFV97608_1022CFTSP3_1006CFVI03293_0793CR44_04830
CR44_08020
6CP0088081038377G992340CFF04554_1030706MCP-domain signal transduction proteinCj1506cCJJ81176_1498A911_07255PJ16_08255PJ17_07875N135_01597N564_01500N565_01536N755_01538PJ18_07650PJ19_08250JJD26997_1858BN867_14750M635_03225UC78_1438C8J_1409CJ8421_07535RC25_07085CJM1cam_1450CJH_07885CJSA_1428ICDCCJ07001_1432CJM1_1450MTVDSCj20_1471ERS445056_01629A0W68_07825H730_08820CJE1679CjjRM1285_1500AXW77_07460CjjRM3196_1506CjjRM3197_1506CJS3_1585A0W69_08660QZ67_01635G157_01355VC76_07445YSS_08035A6K30_01405CFT03427_1021CFF04554_1030CFF8240_1041CSG_9530CFV97608_1097CFTSP3_1083CFVI03293_0998CR44_05185CINS_0215
7CP0088081102970A10112610CFF04554_1097185No annotation dataCFF04554_1097CSG_7070
CSG_6060
CSG_13330
CFV97608_1339
CFV97608_0464
CFV97608_0727
CFVI03293_1043CHL_1000
8CP0088081107558G9None262-2727bp upstream of CFF04554_1106148hypothetical proteinCFF04554_1106CFV97608_0735
CFV97608_1331
CFTSP3_0688
9CP0088081146215G9102350CFF04554_1149418putative membrane proteinCFT03427_1099CFF04554_1149CFF8240_1123CSG_8730CFV97608_1174CFTSP3_1161CFVI03293_1119CR44_05590
10CP0088081240946G992630CFF04554_12555534HB_MCP sensor-containing MCP-domain signal transduction proteinCFT03427_1196CFF04554_1255CFF8240_1227CSG_7650CFV97608_1279CFTSP3_1258CFVI03293_1224CR44_06080
11CP0088081401327G99430CFF04554_1405659No annotation dataCFF04554_1405CFF8240_1393CSG_15310CFV97608_1531CFVI03293_1431
12CP0088081479793G1111150CFF04554_1483398putative Zn-peptidase, M28 family (DUF2172 domain)Cj1295A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
13CP0088081553877G10102390CFF04554_1562400ATP-grasp domain-containing proteinCFT03427_1510
CFT03427_1510
CFF04554_1562
CFF04554_1562
CFF8240_1552
CFF8240_1552
CSG_16880
CSG_16880
CFV97608_1684
CFV97608_1684
CFTSP3_1574
CFTSP3_1574
CFVI03293_1574
CFVI03293_1574
CR44_07655
CR44_07655
CHL_0243
CHL_0243
14CP0088081554054G882640CFF04554_1562400ATP-grasp domain-containing protein
15CP0088081555844G992410CFF04554_1564228SAM-dependent methyltransferaseCFT03427_1512CFF04554_1564CFF8240_1555CSG_16910CFV97608_1688CFTSP3_1576CFVI03293_1586CR44_07670CHL_0244
16CP0088081584831G992420CFF04554_1595356radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB familyCFT03427_1545CFF04554_1595CFF8240_1586CSG_17230CFV97608_1720CFTSP3_1609CFVI03293_1617CR44_07835
17CP0088081588966G772650CFF04554_1600353radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB familyCFT03427_1550CFF04554_1600CFF8240_1593
CFF8240_1592
CSG_17280CFV97608_1725CFTSP3_1614CFVI03293_1622CR44_07860
18CP0088081589867G882430CFF04554_160182No annotation data
19CP0088081592057G992440CFF04554_1604423methyltransferaseCFT03427_1554CFF04554_1604CFF8240_1599CSG_17340CFV97608_1729CFTSP3_1618CFVI03293_1626CR44_07880
20CP0088081594845G1092460CFF04554_1606312formyltransferase domain-containing proteinCFT03427_1556CFF04554_1606CSG_17370CFV97608_1731CFTSP3_1620CFVI03293_1628
21CP0088081596027G992470CFF04554_1608327radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)CFT03427_1558
CFT03427_1552
CFF04554_1608
CFF04554_1602
CSG_17390
CSG_17310
CFV97608_1733
CFV97608_1727
CFTSP3_1622
CFTSP3_1616
CFVI03293_1624
CFVI03293_1630
CR44_07900
CR44_07870
22CP0088081600523G982490CFF04554_1612288No annotation dataCFT03427_1562CFF04554_1612CFF8240_1609CSG_17430CFV97608_1737CFTSP3_1626CFVI03293_1634CR44_07920
23CP0088081603850TA772500CFF04554_1615486hypothetical proteinCFT03427_1565
CFT03427_1565
CFF04554_1615
CFF04554_1615
CFF8240_1613
CFF8240_1613
CSG_17470
CSG_17470
CFV97608_1740
CFV97608_1740
CFTSP3_1629
CFTSP3_1629
CFVI03293_1637
CFVI03293_1637
CR44_07935
CR44_07935
24CP0088081605098G992660CFF04554_1615486hypothetical protein
25CP0088081606703G992510CFF04554_1616673hypothetical proteinCFT03427_1566CFF04554_1616CFF8240_1624CSG_17480CFV97608_1741CFTSP3_1630CFVI03293_1638CR44_07940
26CP0088081614519G992520CFF04554_1623481hypothetical proteinCFT03427_1573CFF04554_1623CFF8240_1621CSG_17550CFV97608_1748CFTSP3_1637CFVI03293_1645CR44_07980
27CP0088081615533G992530CFF04554_1624465hypothetical proteinCFT03427_1574CFF04554_1624CFF8240_1622CSG_17560CFV97608_1749CFTSP3_1638CFVI03293_1646CR44_07990
28CP0088081620212G992540CFF04554_1627448hypothetical proteinCFT03427_1577CFF04554_1627CSG_17590CFV97608_1752CFTSP3_1641CFVI03293_1649CR44_08005
29CP0088081621007G982320CFF04554_1628454No annotation dataCFT03427_0951
CFT03427_1578
CFF04554_0962
CFF04554_1628
CFF8240_0963
CFF8240_1626
CSG_17600
CSG_10300
CFV97608_1022
CFV97608_1753
CFTSP3_1006
CFTSP3_1642
CFVI03293_1650
CFVI03293_0793
CR44_08020
CR44_04830
30CP0088081623432G99190CFF04554_1630253SAM-dependent methyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
31CP0088081623794G882550CFF04554_1631258SAM-dependent methyltransferaseCj1419cCJJ81176_1418A911_06905PJ16_07830N135_01508N564_01416N565_01456N755_01453PJ18_07250PJ19_07825JJD26997_1752BN867_06870M635_02770UC78_1361C8J_0640CJ8421_07140RC25_06630CJM1cam_0658CJH_07480CJSA_1350CJM1_0658MTVDSCj20_0697ERS445056_01535A0W68_03580H730_08050CjjRM1285_1415AXW77_06985A0W69_08255QZ67_01554AR446_04840YSQ_05935YSS_03105YSU_05585CFT03427_1581CFF04554_1631CFF8240_1629CSG_17630CFV97608_1756CFTSP3_1646CFVI03293_1653CR44_08035CINS_0303CONCH_1265UPTC3659_1406Cla_0313CD56_06725CSUB8521_0344CSUB8523_0327
32CP0088081701028G9None267-604604bp upstream of CFF04554_1707103hypothetical proteinCFT03427_1199CFF04554_1707CFF8240_1707CSG_18380CFV97608_1833CFTSP3_1261CFVI03293_1730
33CP0088081725358G992560CFF04554_1736458hypothetical proteinCFT03427_1684CFF04554_1736CFF8240_1739CSG_18690CFV97608_1863CFTSP3_1749CFVI03293_1760CR44_08555