Analysis of poly-G tracts in 4031


Strain name: 4031
Filepath: ../polyG/campy.new\78581-549035525.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0HG42875437024C9None31108108bp downstream of BN867_00280331L-asparaginaseCj0029CJJ81176_0056A911_00140PJ16_00145PJ17_00145N135_00029N564_00028N565_00028N755_001770PJ18_00140PJ19_00145JJD26997_0031BN867_00280M635_04505UC78_0028C8J_0028CJ8421_00150RC25_08535CJM1cam_0027CJH_00150CJSA_0029ICDCCJ07001_25CJM1_0027MTVDSCj20_0028ERS445056_00031A0W68_00140H730_00150CJE0029CjjRM1285_0028AXW77_00140CjjRM3196_0029CjjRM3197_0029CJS3_0029A0W69_01015QZ67_00031N149_0028AB430_01505G157_00140VC76_00145AR446_08145ATE51_00056YSQ_00150YSS_00150YSU_00155A6K30_00145CINS_0082UPTC4110_0082CONCH_0079UPTC3659_0098Cla_0080UPTC16701_0089UPTC16712_0091CD56_00415CPEL_0081CAQ16704_0080CSUB8521_0091CSUB8523_0084CVOL_0080
1HG42875465605G91010BN867_00440254Hemerythrin-like iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
2HG42875476908G7730BN867_00590409Chlorohydrolase/deaminase family proteinCj0067CJJ81176_0105A911_00320PJ16_00350PJ17_00350N135_00070N564_01795N565_01825N755_01830PJ18_00350PJ19_00350JJD26997_0077BN867_00590M635_04705UC78_0071C8J_0060CJ8421_00350RC25_00140CJM1cam_0069CJH_00355CJSA_0061ICDCCJ07001_62CJM1_0069MTVDSCj20_0065ERS445056_00069A0W68_00355CJE0064CjjRM1285_0071AXW77_00345CjjRM3196_0068CjjRM3197_0068CJS3_0067A0W69_01215QZ67_00074N149_0065AB430_01315G157_00325VC76_00335AR446_08320ATE51_00140YSQ_00350YSS_00350YSU_00335A6K30_00350CFT03427_1464CFF04554_1516CFF8240_1504CSG_16390CFV97608_1638CFTSP3_1528CFVI03293_1538CR44_07420CGRAC_1950CHAB381_1212CHL_0206CHH_1542CIG1485E_1454CIG2463D_1647CIG11343_1398CINS_0221UPTC4110_0229CONCH_0227UPTC3659_0246Cla_0229UPTC16701_0236UPTC16712_0235CD56_01155CPEL_0232CAQ16704_0233CSUB8521_0238CSUB8523_0232CUREO_0286CVOL_0223
3HG428754550536G10None26-5353bp upstream of BN867_05750560FIG00470712: hypothetical proteinCJJ81176_0591BN867_05750C8J_0526CJM1cam_0540CJH_02860
CJH_02865
ICDCCJ07001_511
ICDCCJ07001_510
CJM1_0540MTVDSCj20_0583CjjRM1285_0537CjjRM3196_0543CjjRM3197_0543
4HG428754664987G89190BN867_06890257Methyltransferase, possibly involved in O-methyl phosphoramidate capsule modificationCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
5HG428754671124C89110BN867_07010463Possible sugar transferaseCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575
6HG428754718361G1010270BN867_07520180Putative periplasmic proteinCj0735CJJ81176_0758A911_03590PJ16_03950PJ17_03565N135_00784N564_00720N565_00765N755_00762PJ18_03635PJ19_04215BN867_07520C8J_0703RC25_03405CJM1cam_0719CJH_03695CJSA_0699CJM1_0719ERS445056_00720A0W68_03465H730_04585CJE0835AXW77_03600CJS3_0787A0W69_04510QZ67_00749
7HG428754725384C10None122626bp downstream of BN867_07560562FIG00469655: hypothetical proteinCj0742CJJ81176_0764PJ16_03985PJ17_03590N135_02060N564_02000N565_02090N755_02115PJ18_03670PJ19_04250BN867_07560M635_08925UC78_0931
UC78_0713
C8J_0706RC25_03425CJM1cam_0723CJSA_0706ICDCCJ07001_713CJM1_0723MTVDSCj20_0759ERS445056_00730A0W68_03500CjjRM1285_0708AXW77_03620CjjRM3196_0763CjjRM3197_0763A0W69_04545QZ67_00815
8HG4287541109229G99960BN867_11290149unknownBN867_11290C8J_1078CJ8421_05655RC25_05370CJM1cam_1116CJM1_1116MTVDSCj20_1141YSU_03280UPTC16701_1225
9HG4287541110032G1011970BN867_11310157hypothetical proteinBN867_11310CJ8421_05665MTVDSCj20_1143AR446_02565YSQ_03250YSU_03285UPTC4110_1223UPTC16701_1223
10HG4287541268774G99150BN867_12880436FIG00604134: hypothetical proteinCj1295CJJ81176_1312
CJJ81176_1313
A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
11HG4287541275332G9980BN867_12950409FIG00469527: hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02225
N564_02220
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07710
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1265
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06540
VC76_06590
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSQ_02345
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
12HG4287541279471G9980BN867_12990404FIG00469527: hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07710
A0W69_07730
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
13HG4287541289379G8None54-4040bp upstream of BN867_13110319FIG00470314: hypothetical proteinJJD26997_0390BN867_13110YSQ_02230CINS_1197CVOL_1215
14HG4287541296150G99170BN867_13180657Motility accessory factorCj1318
Cj1333
Cj1335
CJJ81176_1336A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07050
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ18_06785
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02360
M635_02285
M635_02370
M635_02375
UC78_1278
UC78_1267
UC78_1276
C8J_1253CJ8421_06665RC25_06245CJM1cam_1292CJH_06700CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265
ICDCCJ07001_1268
CJM1_1292MTVDSCj20_1315ERS445056_01444
ERS445056_01446
ERS445056_01430
A0W68_07165H730_07620
H730_07630
CJE1522
CJE1524
CjjRM1285_1333AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1337
CjjRM3196_1335
CjjRM3197_1337
CjjRM3197_1335
CJS3_1430
CJS3_1427
A0W69_07845QZ67_01453
QZ67_01469
QZ67_01471
N149_1281
N149_1298
N149_1296
N149_1299
AB430_08255
AB430_08325
AB430_08340
VC76_06695AR446_01555
AR446_01560
AR446_01545
ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02175
YSQ_02185
YSQ_02255
YSS_07230
YSS_07245
YSS_07160
YSS_07240
YSU_02220
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
A6K30_02155
CINS_1188CONCH_0163CSUB8521_0178
CSUB8521_0235
CSUB8523_0172CVOL_0220
CVOL_1306
CVOL_1208
15HG4287541299992G99170BN867_13200648Motility accessory factorCj1318
Cj1333
Cj1335
CJJ81176_1336A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07050
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ18_06785
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02360
M635_02285
M635_02370
UC78_1278
UC78_1267
UC78_1276
C8J_1253CJ8421_06665RC25_06245CJM1cam_1292CJH_06700CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265
ICDCCJ07001_1268
CJM1_1292MTVDSCj20_1315ERS445056_01444
ERS445056_01446
ERS445056_01430
A0W68_07165H730_07620
H730_07630
CJE1524
CJE1522
CjjRM1285_1333AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1337
CjjRM3196_1335
CjjRM3197_1337
CjjRM3197_1335
CJS3_1430
CJS3_1427
A0W69_07845QZ67_01453
QZ67_01469
QZ67_01471
N149_1281
N149_1298
N149_1296
AB430_08255
AB430_08325
AB430_08340
VC76_06695AR446_01555
AR446_01560
AR446_01545
ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02185
YSQ_02175
YSQ_02255
YSS_07230
YSS_07245
YSS_07160
YSS_07240
YSU_02220
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
A6K30_02155
CINS_1188CONCH_0163CSUB8521_0178
CSUB8521_0235
CSUB8523_0172CVOL_0220
CVOL_1306
CVOL_1208
16HG4287541311683G9980BN867_13260413FIG00469623: hypothetical proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0368BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_1271CONCH_0811
CONCH_1260
CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
17HG4287541332782G10None98-4242bp upstream of BN867_13460757FIG00471264: hypothetical proteinBN867_13460UC78_1307C8J_1278CJM1cam_1321CJH_06895ICDCCJ07001_1296CJM1_1321MTVDSCj20_1341ERS445056_01472AXW77_06700CjjRM3196_1363CjjRM3197_1363N149_1324AB430_08465G157_02025VC76_06820AR446_01420ATE51_00842YSQ_02050YSS_07370YSU_02085A6K30_02030
18HG4287541389772G8None99-165165bp upstream of BN867_13990517Capsular polysaccharide biosynthesis heptosyltransferase HddDBN867_13990
19HG4287541404567AT771000BN867_14120456Beta-1,3-galactosyltransferase / Beta-1,4-galactosyltransferaseCj1138CJJ81176_1153A911_05515PJ16_05930PJ17_07545
PJ17_05820
N135_01175N564_02170N565_02250N755_02305PJ18_05635PJ19_06195BN867_14120M635_01385CJH_07560CJSA_1080ICDCCJ07001_1374
ICDCCJ07001_1094
ERS445056_01245CjjRM1285_1153AXW77_05590CjjRM3196_1153
CjjRM3196_1442
CjjRM3197_1153
CjjRM3197_1442
A0W69_06880QZ67_01214UPTC4110_1229UPTC3659_1462Cla_1242UPTC16701_0305CPEL_1350
CPEL_1348
CAQ16704_1255
CAQ16704_1253
CSUB8521_1431CSUB8523_1526
20HG4287541419541G89360BN867_14260517alpha-2,3-sialyltransferasePJ17_07485BN867_14260M635_02780