Analysis of poly-G tracts in BFR-CA-9557


Strain name: BFR-CA-9557
Filepath: ../polyG/campy.new\498261-933786786.gb
Species: C. coli

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01177746933G9None172-5151bp upstream of AB430_00255746hypothetical proteinN149_1457AB430_00255AR446_00760YSQ_01360YSU_01375CINS_0952UPTC3659_1199CPEL_1091CSUB8521_1152CSUB8523_1258
1CP011777258726G101010AB430_01410268iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
2CP011777442261G11None173-77bp upstream of AB430_0241040hypothetical proteinN149_1534AB430_02410G157_07835VC76_07855AR446_07220ATE51_04004YSQ_09060YSS_08805YSU_08005A6K30_07890
3CP011777689956C10None1671414bp downstream of AB430_03710402UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetaseCj0432cCJJ81176_0458A911_02105PJ16_02130PJ17_02125N135_00480N564_00413N565_01975N755_00462PJ18_02130PJ19_02395JJD26997_1512BN867_04040M635_06500UC78_0416C8J_0407CJ8421_02165RC25_02140CJM1cam_0416CJH_02185CJSA_0404ICDCCJ07001_398CJM1_0416MTVDSCj20_0406ERS445056_00429A0W68_02095H730_02735CJE0482CjjRM1285_0408AXW77_02090CjjRM3196_0418CjjRM3197_0418CJS3_0421A0W69_03010QZ67_00437N149_0430AB430_03710G157_06485VC76_02270AR446_05945ATE51_03348YSQ_07700YSS_01955YSU_06710A6K30_06570CCC13826_0566CCON33237_1498CCV52592_1046CFT03427_1322CFF04554_1374CFF8240_1358CSG_14960CFV97608_1497CFTSP3_1385CFVI03293_1397CR44_06690CHAB381_1595CHL_0518CHH_1368CIG1485E_1368CIG2463D_1559CIG11343_1315CINS_0263UPTC4110_0272CONCH_0268UPTC3659_0286Cla_0266UPTC16701_0273UPTC16712_0275CD56_01340CPEL_0278CAQ16704_0277CSUB8521_0285CSUB8523_0279CUREO_1551CVOL_0263
4CP011777851085G10980AB430_04500409No annotation dataCj0617CJJ81176_0646A911_03015PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_1051M635_07445CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910H730_03970CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_04500AR446_05110ATE51_02354YSQ_06210YSS_02830YSU_05855A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
UPTC16712_0815CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
5CP0117771099189G10None168-479479bp upstream of AB430_0581083hypothetical proteinAB430_05810G157_04440
6CP0117771257487G981690AB430_06575656hypothetical proteinN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CINS_1119CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
7CP0117771427910G991700AB430_07445515filamentous hemagglutinin15-537360 [0]AB430_07445FB1 [0]AR446_02110RM4661 [0]YSU_02825A6K30_02755
8CP0117771541264G76150AB430_08160436No annotation dataCj1295CJJ81176_1312
CJJ81176_1313
A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
9CP0117771547848G9980AB430_08195405carbonic anhydraseCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07710
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1265
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06540
VC76_06590
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSQ_02345
YSQ_02340
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
10CP0117771562460G10None18-4747bp upstream of AB430_08270180transferaseCj1321A911_06420PJ16_07355PJ17_06995N135_01409N564_02230N565_02320N755_02380PJ19_07355CJ8421_06595A0W68_07105AXW77_06510
AXW77_06505
A0W69_07785N149_1285AB430_08270ATE51_00922
ATE51_00920
YSS_07180
YSS_07175
A6K30_02220
A6K30_02215
11CP0117771565336G9940AB430_08290224methyltransferaseCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_07375
PJ19_00860
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220YSU_02255CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451
12CP0117771575332G1010170AB430_08340593PseD proteinCj1318
Cj1333
Cj1335
CJJ81176_1336A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07050
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ18_06785
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02360
M635_02285
M635_02370
UC78_1278
UC78_1267
UC78_1276
C8J_1253CJ8421_06665RC25_06245CJM1cam_1292CJH_06700CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265
ICDCCJ07001_1268
CJM1_1292MTVDSCj20_1315ERS445056_01444
ERS445056_01446
ERS445056_01430
A0W68_07165H730_07620
H730_07630
CJE1524
CJE1522
CjjRM1285_1333AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1337
CjjRM3196_1335
CjjRM3197_1337
CjjRM3197_1335
CJS3_1430
CJS3_1427
A0W69_07845QZ67_01453
QZ67_01469
QZ67_01471
N149_1281
N149_1298
N149_1296
AB430_08255
AB430_08325
AB430_08340
G157_02140VC76_06695AR446_01560
AR446_01545
ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02185
YSQ_02175
YSQ_02255
YSS_07230
YSS_07245
YSS_07160
YSS_07240
YSU_02220
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
A6K30_02155
CINS_1188CONCH_0163CSUB8521_1411
CSUB8521_0235
CVOL_1306
13CP0117771587049G8980AB430_08370413No annotation dataCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0368BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
Cla_1307CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
14CP0117771607917G9None98-4242bp upstream of AB430_08465751autotransporterBN867_13460UC78_1307C8J_1278CJM1cam_1321CJH_06895ICDCCJ07001_1296CJM1_1321MTVDSCj20_1341ERS445056_01472AXW77_06700CjjRM3196_1363CjjRM3197_1363N149_1324AB430_08465G157_02025VC76_06820AR446_01420ATE51_00842YSQ_02050YSS_07370YSU_02085A6K30_02030
15CP0117771645063G981740AB430_08635615No annotation dataCj1398CJJ81176_1397A911_06800PJ16_07725PJ17_07360N135_02245N564_02335N565_02415N755_01432PJ18_07145PJ19_07720JJD26997_1729BN867_13780M635_02665UC78_1340C8J_1312CJ8421_07035RC25_06525CJM1cam_1355CJH_07075CJSA_1329ICDCCJ07001_1329CJM1_1355MTVDSCj20_1374ERS445056_01514A0W68_03685CJE1585CjjRM1285_1394AXW77_06880CjjRM3196_1398CjjRM3197_1398CJS3_1493A0W69_08150QZ67_01532N149_1359AB430_08635G157_01855VC76_06995AR446_01250ATE51_00770YSQ_01880YSS_07540YSU_01915A6K30_01855CHAB381_0441CHH_1316CIG11343_1271UPTC4110_0290CONCH_0286UPTC3659_0304Cla_0283UPTC16701_0291UPTC16712_0293CD56_01430CPEL_0296CAQ16704_0295CSUB8521_0303CSUB8523_0297CVOL_0281
16CP0117771660758G99360AB430_08720133No annotation dataCJM1cam_1374CJM1_1374MTVDSCj20_1393AB430_08720AR446_01140
17CP0117771668862G89360AB430_08760199No annotation dataAB430_08730
AB430_08800
AB430_08720
AB430_08760
AR446_01105YSU_01755