Analysis of poly-G tracts in RM16701


Strain name: RM16701
Filepath: ../polyG/campy.new\241851-744820081.gb
Species: C. lari

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00777739997G10None472-113113bp upstream of UPTC16701_003978hypothetical proteinUPTC16701_0039CSUB8523_0034
1CP007777396187A10None441-5454bp upstream of UPTC16701_0426799molybdopterin-containing oxidoreductase I, DMSO/TMAO/BSO reductase family, catalytic subunitCFT03427_0794
CFT03427_0438
CFF04554_0427CFF8240_0429CSG_5080CFV97608_0429CFTSP3_0438
CFTSP3_0849
CFVI03293_0426CR44_04040
CR44_02205
CHH_0419
CHH_0761
CIG1485E_0536CIG2463D_0536CINS_0409UPTC4110_0426CONCH_0433UPTC3659_0450Cla_0430UPTC16701_0426UPTC16712_0432CD56_02130CPEL_0439CAQ16704_0446CSUB8521_0462CSUB8523_0448CVOL_0420
2CP007777429821C9None-1-306306bp upstream of UPTC16701_0457216S ribosomal RNA
3CP007777429830T10None-1-297297bp upstream of UPTC16701_0457216S ribosomal RNA
4CP007777483062C10None-1-305305bp upstream of UPTC16701_0513216S ribosomal RNA
5CP007777655673G994430UPTC16701_0685870hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345M635_08855C8J_0908
C8J_0463
A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
6CP007777680189G10104430UPTC16701_0706870hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345M635_08855C8J_0908
C8J_0463
A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
7CP007777814108G10None473-22bp upstream of UPTC16701_08331587putative adhesin/invasin (DUF3442 domain)UPTC16701_0833CPEL_0141
8CP0077771033299G10104450UPTC16701_1056397hypothetical protein (DUF2920 domain)UPTC4110_1065UPTC3659_1299UPTC16701_1056UPTC16712_1086CD56_05580CAQ16704_1077
9CP0077771104690G881690UPTC16701_1131583No annotation dataN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
10CP0077771120625G10104430UPTC16701_1140870hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345M635_08855C8J_0908
C8J_0463
A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
11CP0077771191213G984740UPTC16701_1207286glucose-1-phosphate cytidylyltransferasePJ17_07535CJM1cam_1380ICDCCJ07001_1367CJM1_1380MTVDSCj20_1400CjjRM3196_1435CjjRM3197_1435N149_1084G157_03220VC76_05610A6K30_03230CCON33237_0119CGRAC_1925CHH_0049CIG2463D_0052CONCH_0315UPTC16701_1207CVOL_0299
12CP0077771206445G98960UPTC16701_1225145dTDP-6-deoxy-3,4-keto-hexulose isomeraseBN867_11290C8J_1078CJ8421_05655RC25_05370CJM1cam_1116CJM1_1116MTVDSCj20_1141AR446_02560YSU_03280UPTC4110_1222UPTC16701_1225
13CP0077771270405G99630UPTC16701_1291228methyltransferaseJJD26997_0404
JJD26997_0405
ICDCCJ07001_1256CjjRM3196_1326
CjjRM3196_1327
CjjRM3197_1327
CjjRM3197_1326
CINS_1273
CINS_1274
UPTC4110_1297
UPTC4110_1298
CONCH_1273
CONCH_1272
UPTC3659_1533
UPTC3659_1534
UPTC16701_1292
UPTC16701_1291
UPTC16712_1313
UPTC16712_1314
CSUB8521_1501
CSUB8521_1500
CSUB8523_1596
CSUB8523_1597
14CP0077771405146C9None4757878bp downstream of UPTC16701_1426926putative DNA helicase (AAA domain)AB430_01475G157_00145YSQ_00180UPTC16701_1426CPEL_1558
15CP0077771442559C10None446-130130bp upstream of UPTC16701_1466695MCP-domain signal transduction proteinUPTC4110_1471CONCH_1442UPTC3659_1708Cla_1499UPTC16701_1466UPTC16712_1501CD56_07595CPEL_1598CAQ16704_1501CSUB8521_1703CSUB8523_1804