Created: 2018-09-09 12:25:37 (W. Europe Summer Time)
#Group | Name | Likely Function | #PV in gene | #Total PV | #Total Genes | C. jejuni NCTC 11168 | C. jejuni 81-176 | C. jejuni PT14 | C. jejuni 00-0949 | C. jejuni 00-1597 | C. jejuni 00-2425 | C. jejuni 00-2426 | C. jejuni 00-2538 | C. jejuni 00-2544 | C. jejuni 00-6200 | C. jejuni 01-1512 | C. jejuni 269.97 | C. jejuni 4031 | C. jejuni 32488 | C. jejuni 35925B2 | C. jejuni 81116; NCTC 11828 | C. jejuni CG8421 | C. jejuni CJ677CC519 | C. jejuni CJM1cam | C. jejuni F38011 | C. jejuni IA3902 | C. jejuni ICDCCJ07001 | C. jejuni M1 | C. jejuni MTVDSCj20 | C. jejuni NCTC11351 | C. jejuni OD267 | C. jejuni R14 | C. jejuni RM1221 | C. jejuni RM1285 | C. jejuni RM3194 | C. jejuni RM3196 | C. jejuni RM3197 | C. jejuni S3 | C. jejuni WP2202 | C. jejuni YH001 | C. coli 15-537360 | C. coli BFR-CA-9557 | C. coli CVM N29710 | C. coli FB1 | C. coli HC2-48 | C. coli OR12 | C. coli RM1875 | C. coli RM4661 | C. coli RM5611 | C. coli YH501 | C. concisus 13826 | C. concisus ATCC 33237 | C. curvus 525.92 | C. fetus 03-427 | C. fetus 04/554 | C. fetus 82-40 | C. fetus 84-112 | C. fetus 97/608 | C. fetus SP3 | C. fetus cfvi03/293 | C. fetus pet-3 | C. gracilis ATCC 33236 | C. hominis ATCC BAA-381 | C. hyointestinalis CCUG 27631 | C. hyointestinalis LMG 9260 | C. iguaniorum 1485E | C. iguaniorum 2463D | C. iguaniorum RM11343 | C. insulaenigrae NCTC 12927 | C. lari CCUG 22395 | C. lari LMG 11760 | C. lari NCTC 11845 | C. lari RM2100; ATCC BAA-1060D | C. lari RM16701 | C. lari RM16712 | C. lari Slaughter Beach | C. peloridis LMG 23910 | C. sp. RM16704 | C. subantarcticus LMG 24374 | C. subantarcticus LMG 24377 | C. ureolyticus RIGS 9880 | C. volucris LMG 24379 |
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5 | clpX | ATP-dependent Clp protease ATP-binding subunit ClpX | 13 | 13 | 77 | CJ..6_0302 | A911_01330 | N135_00266 | N564_00260 | N565_00256 | N755_00310 | JJ..7_1695 | BN.._02530 | M635_05655 | UC78_0262 | C8J_0252 | RC25_01405 | CJ..m_0259 | IC..01_252 | CJM1_0259 | MT..0_0251 | ER.._00268 | A0.._01330 | H730_01670 | Cj..6_0263 | Cj..7_0263 | A0.._02210 | N149_0264 | AB.._02830 | G157_07370 | VC76_01395 | AR.._06805 | AT.._03694 | YSQ_08595 | YSS_01095 | YSU_07575 | A6.._07430 | CC..6_2124 | CC..7_0287 | CC..2_0867 | CF..7_0323 | CF..4_0314 | CF..0_0316 | CSG_3960 | CF..8_0317 | CF..3_0320 | CF..3_0315 | CR44_01625 | CGRAC_0286 | CH..1_1353 | CHL_0287 | CHH_1492 | CI..E_0327 | CI..D_0335 | CI..3_0273 | CINS_1343 | UP..0_1376 | CONCH_1344 | UP..9_1612 | Cla_1398 | UP..1_1369 | UP..2_1390 | CD56_07100 | CPEL_1501 | CA..4_1406 | CS..1_1589 | CS..3_1685 | CUREO_0084 | CVOL_1386 |
Function | #Occuring | score |
---|---|---|
ATP-dependent Clp protease ATP-binding subunit ClpX | 3 | 5.09 |
ATP-dependent protease ATP-binding subunit ClpX | 2 | 4.70 |
ATP-dependent Clp protease ATP-binding subunit | 1 | 4.50 |
ATP-dependent Clp protease, ATP-binding subunit ClpX | 1 | 4.27 |
Clp protease ClpX | 4 | 3.88 |
ATP-dependent ClpXP protease, ATP-binding subunit ClpX | 1 | 3.55 |
ATP-dependent protease | 1 | 2.86 |
Subgroup | NCTC 11168 | 81-176 | PT14 | 00-0949 | 00-1597 | 00-2425 | 00-2426 | 00-2538 | 00-2544 | 00-6200 | 01-1512 | 269.97 | 4031 | 32488 | 35925B2 | 81116; NCTC 11828 | CG8421 | CJ677CC519 | CJM1cam | F38011 | IA3902 | ICDCCJ07001 | M1 | MTVDSCj20 | NCTC11351 | OD267 | R14 | RM1221 | RM1285 | RM3194 | RM3196 | RM3197 | S3 | WP2202 | YH001 | 15-537360 | BFR-CA-9557 | CVM N29710 | FB1 | HC2-48 | OR12 | RM1875 | RM4661 | RM5611 | YH501 | 13826 | ATCC 33237 | 525.92 | 03-427 | 04/554 | 82-40 | 84-112 | 97/608 | SP3 | cfvi03/293 | pet-3 | ATCC 33236 | ATCC BAA-381 | CCUG 27631 | LMG 9260 | 1485E | 2463D | RM11343 | NCTC 12927 | CCUG 22395 | LMG 11760 | NCTC 11845 | RM2100; ATCC BAA-1060D | RM16701 | RM16712 | Slaughter Beach | LMG 23910 | RM16704 | LMG 24374 | LMG 24377 | RIGS 9880 | LMG 24379 |
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Subgroup | NCTC 11168 | 81-176 | PT14 | 00-0949 | 00-1597 | 00-2425 | 00-2426 | 00-2538 | 00-2544 | 00-6200 | 01-1512 | 269.97 | 4031 | 32488 | 35925B2 | 81116; NCTC 11828 | CG8421 | CJ677CC519 | CJM1cam | F38011 | IA3902 | ICDCCJ07001 | M1 | MTVDSCj20 | NCTC11351 | OD267 | R14 | RM1221 | RM1285 | RM3194 | RM3196 | RM3197 | S3 | WP2202 | YH001 | 15-537360 | BFR-CA-9557 | CVM N29710 | FB1 | HC2-48 | OR12 | RM1875 | RM4661 | RM5611 | YH501 | 13826 | ATCC 33237 | 525.92 | 03-427 | 04/554 | 82-40 | 84-112 | 97/608 | SP3 | cfvi03/293 | pet-3 | ATCC 33236 | ATCC BAA-381 | CCUG 27631 | LMG 9260 | 1485E | 2463D | RM11343 | NCTC 12927 | CCUG 22395 | LMG 11760 | NCTC 11845 | RM2100; ATCC BAA-1060D | RM16701 | RM16712 | Slaughter Beach | LMG 23910 | RM16704 | LMG 24374 | LMG 24377 | RIGS 9880 | LMG 24379 |
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Neighbour joining tree
UPGMA tree
NCTC 11168 : Cj0275 [tract entry] [top]
00-0949 : PJ16_01315 [tract entry] [top]
00-1597 : PJ17_01350 [tract entry] [top]
00-6200 : PJ18_01325 [tract entry] [top]
01-1512 : PJ19_01315 [tract entry] [top]
CG8421 : CJ8421_01370 [tract entry] [top]
F38011 : CJH_01380 [tract entry] [top]
IA3902 : CJSA_0252 [tract entry] [top]
RM1221 : CJE0324 [tract entry] [top]
RM1285 : CjjRM1285_0255 [tract entry] [top]
RM3194 : AXW77_01315 [tract entry] [top]
S3 : CJS3_0265 [tract entry] [top]
YH001 : QZ67_00276 [tract entry] [top]