Analysis of poly-G tracts in SP3


Strain name: SP3
Filepath: ../polyG/campy.new\603811-971363820.gb
Species: C. fetus

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP010953441767G9None226-145145bp upstream of CFTSP3_0448288hypothetical proteinCFT03427_0448CFF04554_0437CFF8240_0439CSG_5180CFV97608_0439CFTSP3_0448CFVI03293_0436CR44_02255
1CP010953473924C8None280-179179bp upstream of CFTSP3_0471791surface array protein ACFT03427_0494CFF8240_0461CSG_6170CFV97608_0513CFTSP3_0471
CFTSP3_0489
CFTSP3_0495
CFVI03293_0483CR44_02505
2CP010953490968C9None281-179179bp upstream of CFTSP3_04841107surface array protein ACFT03427_0485
CFT03427_0465
CFT03427_0490
CFF04554_0481
CFF04554_0463
CFF8240_0486
CFF8240_0462
CFF8240_0456
CFF8240_0478
CSG_6150
CSG_5520
CSG_5360
CFV97608_0456
CFV97608_0534
CFV97608_0514
CFTSP3_0465
CFTSP3_0484
CFTSP3_0491
CFVI03293_0465
CFVI03293_0456
CFVI03293_0478
CFVI03293_0484
CR44_02445
3CP010953525458C8None2281010bp downstream of CFTSP3_0510429hypothetical protein (DUF945 domain)CFT03427_0509CFF04554_0497CFF8240_0505CSG_6320CFV97608_0549CFTSP3_0510CFVI03293_0501CR44_02590
4CP010953532127G9None229-120120bp upstream of CFTSP3_0516361MCP-domain signal transduction protein (chemoreceptor zinc-binding domain)CCC13826_1521CCON33237_0505CCV52592_0520CFT03427_0515CFF04554_0503CFF8240_0511CSG_1570CFV97608_0555CFTSP3_0516CFVI03293_0507CR44_02620
5CP010953619863G9None230-228228bp upstream of CFTSP3_05956001,4-dihydroxy-2-naphthoate octaprenyltransferaseCj0546CJJ81176_0571A911_02660PJ16_02710PJ17_02645N135_00595N564_00532N565_00580N755_00579PJ18_02715PJ19_02975JJD26997_1384BN867_05560M635_07075UC78_0530C8J_0507CJ8421_02670RC25_02655CJM1cam_0521CJH_02760CJSA_0513ICDCCJ07001_492CJM1_0521MTVDSCj20_0563ERS445056_00532A0W68_02665H730_03605CJE0650CjjRM1285_0517AXW77_02660CjjRM3196_0523CjjRM3197_0523CJS3_0536A0W69_03580QZ67_00556N149_0535AB430_04230G157_05935VC76_02845AR446_05375ATE51_03116YSQ_07125YSS_02530YSU_06135A6K30_06000CCC13826_1045CCON33237_0800CCV52592_0770CFT03427_0594CFF04554_0584CFF8240_0591CSG_2380CFV97608_0637CFTSP3_0595CFVI03293_0587CR44_03025CGRAC_1029CHAB381_0901CHL_1490CHH_0523CIG1485E_0648CIG2463D_0648CIG11343_0576CINS_0741UPTC4110_0786CONCH_0780UPTC3659_0883Cla_0766UPTC16701_0780UPTC16712_0784CD56_04185CPEL_0838CAQ16704_0774CSUB8521_0817CSUB8523_0904CUREO_0645CVOL_0758
6CP010953626531G8None-1-172172bp upstream of CFTSP3_06015No annotation data
7CP010953695513G9None262-3636bp upstream of CFTSP3_0688148hypothetical proteinCFF04554_1106CFV97608_0735
CFV97608_1331
CFTSP3_0688
8CP010953943344G992310CFTSP3_0931522SAM-dependent methyltransferaseCFT03427_0876CFF04554_0883CFF8240_0879CSG_11100CFV97608_0943CFTSP3_0931CFVI03293_0872CR44_04455
9CP0109531016121G882320CFTSP3_1006446hypothetical proteinCFT03427_0951
CFT03427_1578
CFF04554_0962
CFF04554_1628
CFF8240_0963
CFF8240_1626
CSG_17600
CSG_10300
CFV97608_1022
CFV97608_1753
CFTSP3_1006
CFTSP3_1642
CFVI03293_1650
CFVI03293_0793
CR44_08020
CR44_04830
10CP0109531089120G992340CFTSP3_1083706MCP-domain signal transduction proteinCj1506cCJJ81176_1498A911_07255PJ16_08255PJ17_07875N135_01597N564_01500N565_01536N755_01538PJ18_07650PJ19_08250JJD26997_1858BN867_14750M635_03225UC78_1438C8J_1409CJ8421_07535RC25_07085CJM1cam_1450CJH_07885CJSA_1428ICDCCJ07001_1432CJM1_1450MTVDSCj20_1471ERS445056_01629A0W68_07825H730_08820CJE1679CjjRM1285_1500AXW77_07460CjjRM3196_1506CjjRM3197_1506CJS3_1585A0W69_08660QZ67_01635G157_01355VC76_07445YSS_08035A6K30_01405CFT03427_1021CFF04554_1030CFF8240_1041CSG_9530CFV97608_1097CFTSP3_1083CFVI03293_0998CR44_05185CINS_0215
11CP0109531166452G882350CFTSP3_1161416hypothetical membrane proteinCFT03427_1099CFF04554_1149CFF8240_1123CSG_8730CFV97608_1174CFTSP3_1161CFVI03293_1119CR44_05590
12CP0109531183673G992360CFTSP3_11771310autotransporter domain proteinCFT03427_1115CFF8240_0465CFTSP3_1177CR44_05670CIG1485E_0008
CIG1485E_0796
CIG1485E_1594
CIG1485E_0473
CIG2463D_0797
CIG2463D_1791
CIG2463D_0008
CIG2463D_0474
13CP0109531498952G88150CFTSP3_1495424putative Zn-peptidase, M28 family (DUF2172 domain)Cj1295A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
14CP0109531508069G10102380CFTSP3_1506177hypothetical proteinCFT03427_1442CFF04554_1493CFF8240_1481CSG_16150CFV97608_1615CFTSP3_1506CFVI03293_1515CR44_07310
15CP0109531573454G9102390CFTSP3_1574128No annotation data
16CP0109531573630G10102820CFTSP3_157469No annotation data
17CP0109531575417G992410CFTSP3_1576228SAM-dependent methyltransferaseCFT03427_1512CFF04554_1564CFF8240_1555CSG_16910CFV97608_1688CFTSP3_1576CFVI03293_1586CR44_07670CHL_0244
18CP0109531605781G10102420CFTSP3_1609356radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB familyCFT03427_1545CFF04554_1595CFF8240_1586CSG_17230CFV97608_1720CFTSP3_1609CFVI03293_1617CR44_07835
19CP0109531610818G882430CFTSP3_16152373-oxoacyl-[acp] reductaseCFT03427_1551CFF04554_1601CSG_17290CFV97608_1726CFTSP3_1615CFVI03293_1623CR44_07865
20CP0109531613009G992440CFTSP3_1618423methyltransferaseCFT03427_1554
CFT03427_1554
CFF04554_1604
CFF04554_1604
CFF8240_1599
CFF8240_1599
CSG_17340
CSG_17340
CFV97608_1729
CFV97608_1729
CFTSP3_1618
CFTSP3_1618
CFVI03293_1626
CFVI03293_1626
CR44_07880
CR44_07880
21CP0109531613412G772830CFTSP3_1618423methyltransferase
22CP0109531615798G982460CFTSP3_1620312formyltransferase domain-containing proteinCFT03427_1556CFF04554_1606CSG_17370CFV97608_1731CFTSP3_1620CFVI03293_1628
23CP0109531616980G992470CFTSP3_1622327radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)CFT03427_1558
CFT03427_1552
CFF04554_1608
CFF04554_1602
CSG_17390
CSG_17310
CFV97608_1733
CFV97608_1727
CFTSP3_1622
CFTSP3_1616
CFVI03293_1624
CFVI03293_1630
CR44_07900
CR44_07870
24CP0109531617873G992480CFTSP3_1623444hypothetical proteinCFT03427_1559CFF04554_1609CFF8240_1606CSG_17400CFV97608_1734CFTSP3_1623CFVI03293_1631CR44_07905
25CP0109531621474G10102490CFTSP3_1626289methyltransferaseCFT03427_1562CFF04554_1612CFF8240_1609CSG_17430CFV97608_1737CFTSP3_1626CFVI03293_1634CR44_07920
26CP0109531626049G992500CFTSP3_1629484hypothetical proteinCFT03427_1565CFF04554_1615CFF8240_1613CSG_17470CFV97608_1740CFTSP3_1629CFVI03293_1637CR44_07935
27CP0109531627654G9102510CFTSP3_1630672No annotation dataCFT03427_1566CFF04554_1616CFF8240_1624CSG_17480CFV97608_1741CFTSP3_1630CFVI03293_1638CR44_07940
28CP0109531635466G992520CFTSP3_1637481hypothetical proteinCFT03427_1573CFF04554_1623CFF8240_1621CSG_17550CFV97608_1748CFTSP3_1637CFVI03293_1645CR44_07980
29CP0109531636480G992530CFTSP3_1638465hypothetical membrane proteinCFT03427_1574CFF04554_1624CFF8240_1622CSG_17560CFV97608_1749CFTSP3_1638CFVI03293_1646CR44_07990
30CP0109531641162G992540CFTSP3_1641448hypothetical membrane proteinCFT03427_1577CFF04554_1627CSG_17590CFV97608_1752CFTSP3_1641CFVI03293_1649CR44_08005
31CP0109531641957G882320CFTSP3_1642453hypothetical proteinCFT03427_0951
CFT03427_1578
CFF04554_0962
CFF04554_1628
CFF8240_0963
CFF8240_1626
CSG_17600
CSG_10300
CFV97608_1022
CFV97608_1753
CFTSP3_1006
CFTSP3_1642
CFVI03293_1650
CFVI03293_0793
CR44_08020
CR44_04830
32CP0109531644376G99190CFTSP3_1645253SAM-dependent methyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
33CP0109531644738G992550CFTSP3_1646258SAM-dependent methyltransferaseCj1419cCJJ81176_1418A911_06905PJ16_07830N135_01508N564_01416N565_01456N755_01453PJ18_07250PJ19_07825JJD26997_1752BN867_06870M635_02770UC78_1361C8J_0640CJ8421_07140RC25_06630CJM1cam_0658CJH_07480CJSA_1350CJM1_0658MTVDSCj20_0697ERS445056_01535A0W68_03580H730_08050CjjRM1285_1415AXW77_06985A0W69_08255QZ67_01554AR446_04840YSQ_05935YSS_03105YSU_05585CFT03427_1581CFF04554_1631CFF8240_1629CSG_17630CFV97608_1756CFTSP3_1646CFVI03293_1653CR44_08035CINS_0303CONCH_1265UPTC3659_1406Cla_0313CD56_06725CSUB8521_0344CSUB8523_0327
34CP0109531743466G992560CFTSP3_1749458hypothetical proteinCFT03427_1684CFF04554_1736CFF8240_1739CSG_18690CFV97608_1863CFTSP3_1749CFVI03293_1760CR44_08555
35CP0109531811557G9None257-4343bp upstream of CFTSP3_182169hypothetical proteinCFT03427_1756CFTSP3_1821CR44_08920