Analysis of poly-G tracts in CVM N29710


Strain name: CVM N29710
Filepath: ../polyG/campy.new\62951-540365286.gb
Species: C. coli

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00406665723G101010G157_00215268putative iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
1CP004066355496G99360G157_01745591sugar transferaseG157_01745CD56_01550CAQ16704_0309CSUB8523_0276
2CP004066357471G991750G157_01750666capsular polysaccharide biosynthesis proteinG157_01750
3CP004066358700G991760G157_01760432haloacid dehalogenase-like hydrolase domain/phosphoribulokinase domain proteinPJ18_07280CJE1606CJS3_1514QZ67_01560G157_01760VC76_07085ATE51_00730YSU_01815CINS_0296CD56_01560
4CP004066414378G9None98-5151bp upstream of G157_02025755hypothetical proteinBN867_13460UC78_1307C8J_1278CJM1cam_1321CJH_06895ICDCCJ07001_1296CJM1_1321MTVDSCj20_1341ERS445056_01472AXW77_06700CjjRM3196_1363CjjRM3197_1363N149_1324AB430_08465G157_02025VC76_06820AR446_01420ATE51_00842YSQ_02050YSS_07370YSU_02085A6K30_02030
5CP004066435260G9980G157_02115413hypothetical proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0368BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
6CP004066453247G101040G157_02190226Putative methyl transferaseCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_07375
PJ19_00860
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220YSU_02255CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451
7CP004066458635C10None155-634634bp upstream of G157_02210343Pse synthetaseCj1317CJJ81176_1334A911_06405PJ16_07335PJ17_06975N135_01406N564_01335N565_01374N755_01370PJ18_06780PJ19_07335JJD26997_0397BN867_13060M635_02275UC78_1266C8J_1251CJ8421_06560RC25_06235CJM1cam_1290CJH_06690CJSA_1255ICDCCJ07001_1263CJM1_1290MTVDSCj20_1313ERS445056_01429A0W68_07090H730_07535CJE1512CjjRM1285_1331AXW77_06485CjjRM3196_1334CjjRM3197_1334CJS3_1417A0W69_07770QZ67_01452N149_1280AB430_08250G157_02210VC76_06635AR446_01565ATE51_00930YSQ_02260YSS_07155YSU_02275A6K30_02240CCV52592_0565CSG_16920CFVI03293_1587CHL_0245CHH_1600CINS_0157UPTC4110_0170CONCH_0164UPTC3659_0189Cla_0169UPTC16701_0178UPTC16712_0176CD56_00855CPEL_0174CAQ16704_0169CSUB8521_0179CSUB8523_0173CVOL_0160
8CP004066464311G99450G157_022603393-oxoacyl-ACP synthasePJ17_06935N149_1272G157_02260VC76_06585AR446_01605YSQ_02305YSS_07110YSU_02320A6K30_02280Cla_1314CD56_06750
9CP004066466839G99290G157_02280239formyl transferase domain-containing proteinCJJ81176_1325PJ17_06920JJD26997_0414C8J_1241RC25_06185CJM1cam_1280ICDCCJ07001_1253CJM1_1280MTVDSCj20_1304ERS445056_01420CJE1498CjjRM3196_1322CjjRM3197_1322CJS3_1403N149_1269G157_02280VC76_06560AR446_01620YSQ_02320YSU_02350A6K30_02295CVOL_1294
10CP004066470191C9None118-637637bp upstream of G157_02290502Putative amino acid activating enzymeCj1307CJJ81176_1322A911_06350PJ17_06910N135_01396N564_01325N565_01364N755_01359PJ18_06730JJD26997_0415BN867_12960M635_02225UC78_1255C8J_1240CJ8421_06510RC25_06180CJM1cam_1279CJH_06615CJSA_1245ICDCCJ07001_1250CJM1_1279MTVDSCj20_1303ERS445056_01417A0W68_07030H730_07470CJE1496CjjRM1285_1321AXW77_06435CjjRM3196_1320CjjRM3197_1320CJS3_1401A0W69_07715QZ67_01442N149_1267AB430_08200G157_02290VC76_06550AR446_01630ATE51_00950YSQ_02330YSS_07095YSU_02360A6K30_02305CFT03427_1430CFF04554_1482CFF8240_1466CSG_16030CFV97608_1604CFTSP3_1494CFVI03293_1504CR44_07245CHL_1691CHH_1508CIG1485E_0399CIG11343_0348CINS_0774UPTC4110_1288CONCH_1261UPTC3659_1524Cla_1311UPTC16712_1304CD56_06705CPEL_1414CAQ16704_1316CSUB8521_0848CSUB8523_0935CVOL_1292
11CP004066477174G9None177144144bp downstream of G157_02350376aminotransferase, DegT/DnrJ/EryC1/StrS family proteinCj1294CJJ81176_1311A911_06285PJ16_07250PJ17_06860N135_01382N564_01312N565_01349N755_01344PJ18_06670PJ19_07250JJD26997_0428BN867_12870M635_02165UC78_1246C8J_1237CJ8421_06445RC25_06165CJM1cam_1276CJH_06555CJSA_1232ICDCCJ07001_1242CJM1_1276MTVDSCj20_1300ERS445056_01405A0W68_06975H730_07420CJE1486CjjRM1285_1308AXW77_06380CjjRM3196_1310CjjRM3197_1310CJS3_1391A0W69_07660QZ67_01429N149_1255AB430_08155G157_02350VC76_06495AR446_01685ATE51_00976YSQ_02390YSS_07025YSU_02415A6K30_02355CCV52592_0561CFT03427_1526CFF04554_1576CFF8240_1567CSG_17040CFV97608_1700CFTSP3_1590CFVI03293_1598CR44_07740CHL_1448CHH_1613CIG1485E_1519CIG2463D_1716CIG11343_1465CINS_1262UPTC4110_1285CONCH_1252UPTC3659_1522Cla_1299UPTC16701_1282UPTC16712_1301CD56_06690CPEL_1408CAQ16704_1311CSUB8521_1488CSUB8523_1584CVOL_1278
12CP004066551068G10None-1455455bp downstream of G157_t085346No annotation data
13CP004066733559G10None178302302bp downstream of G157_03665259hypothetical proteinCj1056cCJJ81176_1076A911_05110PJ16_05525PJ17_05430N135_01092N564_01024N565_01069N755_01062PJ18_05230PJ19_05790JJD26997_0666BN867_10500M635_00990UC78_1013C8J_0997CJ8421_05250RC25_04970CJM1cam_1034CJH_05315CJSA_0999ICDCCJ07001_1020CJM1_1034MTVDSCj20_1061ERS445056_01162A0W68_05520H730_06255CJE1199CjjRM1285_1075AXW77_05200CjjRM3196_1075CjjRM3197_1075CJS3_1104A0W69_06475QZ67_01129N149_0994AB430_06580G157_03665VC76_05160AR446_03005ATE51_01496YSQ_03700YSS_05725YSU_03745A6K30_03665CCC13826_0273CCON33237_0422CCV52592_0982CFT03427_0618CFF04554_0608CFF8240_0615CSG_6430CFV97608_0661CFTSP3_0616CFVI03293_0611CR44_03145CHL_0586CHH_0548CIG1485E_0708CIG2463D_0709CIG11343_0666CINS_1120UPTC4110_1140CONCH_1112UPTC3659_1374Cla_1158UPTC16701_1132UPTC16712_1164CD56_05960CPEL_1267CAQ16704_1151CSUB8521_1331CSUB8523_1432CUREO_0304CVOL_1131
14CP004066891799G10None168-4646bp upstream of G157_04435144hypothetical proteinN149_0842G157_04435A6K30_04440
15CP0040661308480C9None16744bp downstream of G157_06485402UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetaseCj0432cCJJ81176_0458A911_02105PJ16_02130PJ17_02125N135_00480N564_00413N565_01975N755_00462PJ18_02130PJ19_02395JJD26997_1512BN867_04040M635_06500UC78_0416C8J_0407CJ8421_02165RC25_02140CJM1cam_0416CJH_02185CJSA_0404ICDCCJ07001_398CJM1_0416MTVDSCj20_0406ERS445056_00429A0W68_02095H730_02735CJE0482CjjRM1285_0408AXW77_02090CjjRM3196_0418CjjRM3197_0418CJS3_0421A0W69_03010QZ67_00437N149_0430AB430_03710G157_06485VC76_02270AR446_05945ATE51_03348YSQ_07700YSS_01955YSU_06710A6K30_06570CCC13826_0566CCON33237_1498CCV52592_1046CFT03427_1322CFF04554_1374CFF8240_1358CSG_14960CFV97608_1497CFTSP3_1385CFVI03293_1397CR44_06690CHAB381_1595CHL_0518CHH_1368CIG1485E_1368CIG2463D_1559CIG11343_1315CINS_0263UPTC4110_0272CONCH_0268UPTC3659_0286Cla_0266UPTC16701_0273UPTC16712_0275CD56_01340CPEL_0278CAQ16704_0277CSUB8521_0285CSUB8523_0279CUREO_1551CVOL_0263
16CP0040661489441A1091790G157_07480159hypothetical proteinCj0249CJJ81176_0276A911_01200PJ16_01185PJ17_01225N135_00157N564_00234N565_00230N755_00285PJ18_00795PJ19_01185JJD26997_0249BN867_02240M635_05525UC78_0236C8J_0226CJ8421_01230RC25_00965CJM1cam_0231CJH_01250CJSA_0226ICDCCJ07001_230CJM1_0231MTVDSCj20_0225ERS445056_00240A0W68_01205H730_01540CJE0299CjjRM1285_0229AXW77_01190CjjRM3196_0237CjjRM3197_0237CJS3_0239A0W69_02080QZ67_00165N149_0241AB430_02715G157_07480VC76_01280AR446_06920ATE51_03858YSQ_08710YSS_08440YSU_07690A6K30_07545CCC13826_1699CCON33237_1686CCV52592_0632CFT03427_0157CFF04554_0152CFF8240_0150CSG_1550CFV97608_0154CFTSP3_0155CFVI03293_0152CR44_00795CHL_1715CHH_0157CIG1485E_0165CIG2463D_0168CIG11343_0114CINS_0136UPTC4110_0148CONCH_0144UPTC3659_0166Cla_0148UPTC16701_0156UPTC16712_0154CD56_00745CPEL_0152CAQ16704_0147CSUB8521_0158CSUB8523_0152CVOL_0141