Analysis of poly-G tracts in FB1


Strain name: FB1
Filepath: ../polyG/campy.new\312341-769548161.gb
Species: C. coli

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01101548827G10900VC76_001851266Eco57I restriction-modification methylaseCj0031CJJ81176_0068A911_00150PJ16_00180PJ17_00185N135_00036N564_00030N565_00030N755_00030PJ18_00175PJ19_00180JJD26997_0043BN867_00300UC78_0040C8J_0034CJ8421_00165RC25_00010CJM1cam_0039CJH_00185CJSA_0032ICDCCJ07001_36CJM1_0039MTVDSCj20_0039ERS445056_00036A0W68_00175H730_00165CJE0031CjjRM1285_0039AXW77_00175CjjRM3196_0040CjjRM3197_0040CJS3_0031A0W69_01050QZ67_00037N149_0037AB430_01470G157_00150VC76_00185AR446_08190ATE51_00072YSQ_00185YSS_00195YSU_00200A6K30_00205CINS_0480UPTC4110_1431CONCH_1400UPTC3659_1667Cla_1457UPTC16701_1425UPTC16712_1445CD56_07380CPEL_1557CSUB8521_1649CSUB8523_1744CVOL_1446
1CP01101564793G91010VC76_00250254BacteriohemerythrinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
2CP011015436982C9None1671313bp downstream of VC76_02270402UDP-N-acetylmuramoylalanine--D-glutamate ligaseCj0432cCJJ81176_0458A911_02105PJ16_02130PJ17_02125N135_00480N564_00413N565_01975N755_00462PJ18_02130PJ19_02395JJD26997_1512BN867_04040M635_06500UC78_0416C8J_0407CJ8421_02165RC25_02140CJM1cam_0416CJH_02185CJSA_0404ICDCCJ07001_398CJM1_0416MTVDSCj20_0406ERS445056_00429A0W68_02095H730_02735CJE0482CjjRM1285_0408AXW77_02090CjjRM3196_0418CjjRM3197_0418CJS3_0421A0W69_03010QZ67_00437N149_0430AB430_03710G157_06485VC76_02270AR446_05945ATE51_03348YSQ_07700YSS_01955YSU_06710A6K30_06570CCC13826_0566CCON33237_1498CCV52592_1046CFT03427_1322CFF04554_1374CFF8240_1358CSG_14960CFV97608_1497CFTSP3_1385CFVI03293_1397CR44_06690CHAB381_1595CHL_0518CHH_1368CIG1485E_1368CIG2463D_1559CIG11343_1315CINS_0263UPTC4110_0272CONCH_0268UPTC3659_0286Cla_0266UPTC16701_0273UPTC16712_0275CD56_01340CPEL_0278CAQ16704_0277CSUB8521_0285CSUB8523_0279CUREO_1551CVOL_0263
3CP011015853657G9None168-480480bp upstream of VC76_04385146hypothetical proteinN149_0841AB430_05810G157_04440VC76_04385ATE51_01810YSU_04530A6K30_04445
4CP0110151011773G10111690VC76_05155656hypothetical proteinN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CINS_1119CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
5CP0110151194256G991700FB1 [0]522No data, identified by script15-537360 [0]AB430_07445FB1 [0]AR446_02110RM4661 [0]YSU_02825A6K30_02755
6CP0110151268109G1010150VC76_06500435hypothetical proteinCj1295CJJ81176_1312
CJJ81176_1313
A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
7CP0110151275096G9980VC76_06540334hypothetical proteinCj1305c
Cj1306c
CJJ81176_1321
CJJ81176_1327
A911_06345
A911_06340
A911_06370
PJ16_07300PJ17_06905N135_01395
N135_02215
N564_02220
N564_02225
N565_02310
N565_02315
N755_02365
N755_02370
PJ18_06725
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
BN867_12950M635_02215
M635_02220
UC78_1254C8J_1243CJ8421_06495CJM1cam_1282CJH_06610CJSA_1243
CJSA_1244
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07025H730_07465CJE1495CjjRM1285_1318
CjjRM1285_1320
AXW77_06430CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1400A0W69_07710QZ67_01439
QZ67_01441
N149_1265
N149_1264
AB430_08195VC76_06540AR446_01640
AR446_01635
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02345
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
A6K30_02310CSUB8523_0939
CSUB8523_0933
CVOL_1290
8CP0110151278451G89290VC76_06560239Linear gramicidin synthase subunit ACJJ81176_1325PJ17_06920JJD26997_0414C8J_1241RC25_06185CJM1cam_1280ICDCCJ07001_1253CJM1_1280MTVDSCj20_1304ERS445056_01420CJE1498CjjRM3196_1322CjjRM3197_1322CJS3_1403N149_1269G157_02280VC76_06560AR446_01620YSQ_02320YSU_02350A6K30_02295CVOL_1294
9CP0110151282038G9980VC76_06590403hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1504CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07710
A0W69_07730
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0772
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0940
CVOL_1290
CVOL_0789
10CP0110151286650G10101300VC76_06625286hypothetical proteinCj1316cCJJ81176_1333A911_06400PJ16_07330PJ17_06970N135_01405N564_01334N565_01373N755_01369PJ18_06775PJ19_07330JJD26997_0398BN867_13050M635_02270UC78_1265C8J_1250CJ8421_06555RC25_06230CJM1cam_1289CJH_06660CJSA_1254ICDCCJ07001_1262CJM1_1289MTVDSCj20_1312ERS445056_01428A0W68_07085H730_07530CJE1511CjjRM1285_1330AXW77_06480CjjRM3196_1333CjjRM3197_1333CJS3_1416A0W69_07765QZ67_01451N149_1279AB430_08245VC76_06625AR446_01570ATE51_00932YSQ_02265YSS_07150YSU_02280A6K30_02245CINS_1280UPTC4110_1304CONCH_1279Cla_1328UPTC16701_1298UPTC16712_1320CD56_06785CSUB8521_1510CSUB8523_1606CVOL_1311
11CP0110151292035G101040VC76_06655226tellurite resistance protein TehBCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_07375
PJ19_00860
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220YSU_02255CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451
12CP0110151310025G9980VC76_06720413hypothetical proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0368BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
13CP0110151387856G991800VC76_07095437hypothetical proteinVC76_07095
VC76_07100
ATE51_00726YSU_01805