Analysis of poly-G tracts in OD267


Strain name: OD267
Filepath: ../polyG/campy.new\662621-1004802048.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01474468689G101010A0W68_00270254iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
1CP01474481135A101030A0W68_00355409chlorohydrolaseCj0067CJJ81176_0105A911_00320PJ16_00350PJ17_00350N135_00070N564_01795N565_01825N755_01830PJ18_00350PJ19_00350JJD26997_0077BN867_00590M635_04705UC78_0071C8J_0060CJ8421_00350RC25_00140CJM1cam_0069CJH_00355CJSA_0061ICDCCJ07001_62CJM1_0069MTVDSCj20_0065ERS445056_00069A0W68_00355CJE0064CjjRM1285_0071AXW77_00345CjjRM3196_0068CjjRM3197_0068CJS3_0067A0W69_01215QZ67_00074N149_0065AB430_01315G157_00325VC76_00335AR446_08320ATE51_00140YSQ_00350YSS_00350YSU_00335A6K30_00350CFT03427_1464CFF04554_1516CFF8240_1504CSG_16390CFV97608_1638CFTSP3_1528CFVI03293_1538CR44_07420CHAB381_1212CHL_0206CHH_1542CIG1485E_1454CIG2463D_1647CIG11343_1398CINS_0221UPTC4110_0229CONCH_0227UPTC3659_0246Cla_0229UPTC16701_0236UPTC16712_0235CD56_01155CPEL_0232CAQ16704_0233CSUB8521_0238CSUB8523_0232CUREO_0286CVOL_0223
2CP014744427227T10None6-3535bp upstream of A0W68_0228031No annotation dataNCTC 11168 [0]CJJ81176_1716A911_t08342PJ16_02315PJ17_02310N135_00518N564_00452N565_00503N755_00501PJ18_02315PJ19_02580JJD26997_1469M635_06685UC78_0452C8J_t0006CJ8421_t08717RC25_02325CJM1cam_0452CJH_02370CJSA_t0006ICDCCJ07001_430CJM1_0452MTVDSCj20_0443ERS445056_00466A0W68_02280H730_t10002CJE_tRNA-Thr-1CjjRM1285_0446AXW77_02275CjjRM3196_0456CjjRM3197_0456CJS3_1819A0W69_03195QZ67_01929N149_0467AB430_03895G157_t08574VC76_02455AR446_05760ATE51_03274YSQ_07515YSS_02140YSU_06525A6K30_06385CCC13826_2230CCON33237_0674CCV52592_2194CFT03427_1294CFF04554_1346CFF8240_1329CFV97608_1469CFTSP3_1357CFVI03293_1369CR44_06550CGRAC_1613CHAB381_1676CHL_1409CHH_1336CIG1485E_1341CIG2463D_1532CIG11343_1290CINS_0415UPTC4110_0433CONCH_0439UPTC3659_0456Cla_0436UPTC16701_0433UPTC16712_0439CD56_02165CPEL_0445CAQ16704_0452CSUB8521_0468CSUB8523_0454CUREO_1290CVOL_0426
3CP014744520807G10None146-165165bp upstream of A0W68_02765253hemolysinCj0588CJJ81176_0616A911_02870PJ16_02935PJ17_02850N135_00639N564_00576N565_00622N755_00621PJ18_02940PJ19_03200JJD26997_1081BN867_05970M635_07305UC78_0572C8J_0550CJ8421_02870RC25_02835CJM1cam_0565CJH_02985CJSA_0556ICDCCJ07001_536CJM1_0565MTVDSCj20_0608ERS445056_00575A0W68_02765H730_03815CJE0691CjjRM1285_0561AXW77_02880CjjRM3196_0567CjjRM3197_0567CJS3_0578A0W69_03810QZ67_00603N149_1224AB430_08000G157_02490VC76_06340AR446_01840ATE51_01038YSQ_02545YSS_06860YSU_02570A6K30_02510CCC13826_2024CCON33237_1308CFT03427_1088CFF04554_1138CFF8240_1111CSG_8840CFV97608_1163CFTSP3_1150CFVI03293_1108CR44_05535CHAB381_1016CIG1485E_1156CIG2463D_1247CIG11343_1110CINS_0654UPTC4110_0689CONCH_0683UPTC3659_0773Cla_0674UPTC16701_0680UPTC16712_0685CD56_03680CPEL_0742CAQ16704_0858CSUB8521_0719CSUB8523_0807CUREO_0802CVOL_0668
4CP014744550301G91080A0W68_02910409hypothetical proteinCj0617CJJ81176_0646A911_03015PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_1051M635_07445CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910H730_03970CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_04500AR446_05110ATE51_02354YSQ_06210YSS_02830
YSS_07275
YSU_05855A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
UPTC16712_0815CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
5CP014744599107G1011100OD267 [0]311No data, identified by scriptCj0676CJJ81176_0699PJ16_03350PJ17_0327500-2425 [0]00-2426 [0]00-2538 [0]00-2544 [0]PJ18_03340PJ19_03615BN867_06750M635_07715UC78_0651C8J_0628RC25_01270CJM1cam_0644CJH_03385CJSA_0637ICDCCJ07001_614CJM1_0645MTVDSCj20_0685ERS445056_00656OD267 [0]CJE0774CjjRM1285_0640AXW77_03300CjjRM3196_0645CjjRM3197_0645CJS3_0664A0W69_04210QZ67_00687
6CP014744609945C89110A0W68_03215436invasion proteinCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575
7CP014744666880G11None1478888bp downstream of A0W68_03505446AMP-dependent synthetaseJJD26997_1426A0W68_03505H730_08120A0W69_04550CONCH_0302CSUB8521_0275CSUB8523_0269CVOL_1301
CVOL_0256
8CP014744671122G99360A0W68_03520587hypothetical proteinA911_07000JJD26997_1789CJH_07630A0W68_03520A0W69_08405
A0W69_04565
CSUB8521_0320
CSUB8521_0278
CSUB8523_0272
9CP014744676483G10None92-141141bp upstream of A0W68_03540308sugar transferaseERS445056_01581A0W68_03540CjjRM1285_1456AXW77_07060A0W69_04585
10CP014744679529G99200A0W68_03560360capsular biosynthesis proteinA0W68_03560H730_08070
11CP014744681757G109190A0W68_03575258methyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
12CP0147441114573G98130A0W68_05925295beta-1,3 galactosyltransferaseCj1139cA911_05520PJ16_05935PJ17_05830N135_01176N564_02175N565_01148N755_02310PJ18_05645PJ19_06200M635_01395CJSA_1081A0W68_05925A0W69_06885UPTC16712_1240
13CP0147441120121G99140A0W68_05955283hypothetical proteinCj1144c
Cj1144c
A911_05550
A911_05550
PJ16_05965
PJ16_05965
N135_02190
N135_02190
N564_01110
N564_01110
N565_02255
N565_02255
N755_02315
N755_02315
PJ19_06230
PJ19_06230
UC78_1098
UC78_1098
CJSA_1086
CJSA_1086
A0W68_05955
A0W68_05955
H730_06670
H730_06670
CJE1281
CJE1281
CJS3_1186
CJS3_1186
A0W69_06915
A0W69_06915
CPEL_1344
CPEL_1344
CAQ16704_1249
CAQ16704_1249
CSUB8523_1524
CSUB8523_1524
14CP0147441120130A13131480A0W68_05955283hypothetical protein
15CP0147441307108G109150A0W68_06980444aminopeptidaseCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
16CP0147441308579G1010160A0W68_06985263acetyltransferaseCj1298
Cj1296
CJJ81176_1315A911_06295
A911_06305
PJ16_07260
PJ16_07265
PJ17_06870N135_02210
N135_01386
N564_02215
N564_01316
N565_01353
N565_02305
N755_01348
N755_02360
PJ18_06680
PJ18_06685
PJ19_07265
PJ19_07260
JJD26997_0426
JJD26997_0425
BN867_12890M635_02175
M635_02170
UC78_1248C8J_1239CJ8421_06460RC25_06175CJM1cam_1278CJH_06565
CJH_06570
CJSA_1236
CJSA_1234
ICDCCJ07001_1244CJM1_1278MTVDSCj20_1302ERS445056_01407A0W68_06985
A0W68_06990
H730_07430CJE1488CjjRM1285_1310
CjjRM1285_1311
AXW77_06390
AXW77_06395
CjjRM3196_1312CjjRM3197_1312CJS3_1394A0W69_07670
A0W69_07675
QZ67_01432
QZ67_01431
N149_1258AB430_08165G157_02335VC76_06505AR446_01675YSQ_02380YSS_07040
YSS_07035
YSU_02405A6K30_02345CFF04554_1479CONCH_1254Cla_1301CD56_06700CPEL_1413CSUB8521_1490CSUB8523_1586CVOL_1291
CVOL_1281
17CP0147441314913G9980A0W68_07025365carbonic anhydraseCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02225
N564_02220
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06610CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07055
A0W68_07025
A0W68_07045
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07710
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195G157_02255VC76_06540
VC76_06590
AR446_01640
AR446_01635
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CONCH_1270Cla_1317
Cla_1308
CSUB8521_0851
CSUB8521_0846
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CVOL_1290
CVOL_0789
18CP0147441319052G9980A0W68_07045397carbonic anhydraseCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07710
A0W69_07730
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0772
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
19CP0147441320243G8980A0W68_07055362hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07055
A0W68_07025
A0W68_07045
H730_07465CJE1504CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0772
CINS_0773
Cla_1317
Cla_1308
Cla_0796
CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8523_0933
CSUB8523_0938
CVOL_1290
20CP0147441328804G9None18-4545bp upstream of A0W68_07105180transferaseCj1321A911_06420PJ16_07355PJ17_06995N135_01409N564_02230N565_02320N755_02380PJ19_07355CJ8421_06595A0W68_07105AXW77_06510A0W69_07785N149_1285AB430_08270ATE51_00922
ATE51_00920
YSS_07180
YSS_07175
A6K30_02220
A6K30_02215
21CP0147441331665G10940A0W68_07125225methyltransferaseCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_07375
PJ19_00860
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220YSU_02255CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451
22CP0147441350979G9980A0W68_07215416hypothetical proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0407
JJD26997_0368
BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_0797UPTC16712_0815CSUB8521_1498
CSUB8521_0845
CSUB8523_1594CVOL_1289
23CP0147441404234G1110700A0W68_07475396GDP-fucose synthetaseCj1428cCJJ81176_1427PJ16_07875N135_01519N564_01426N565_01466N755_01462PJ18_07315PJ19_07870JJD26997_1765
JJD26997_0706
JJD26997_1764
BN867_14040M635_02865UC78_1369CJ8421_07180RC25_06660CJH_07520ICDCCJ07001_1359
ICDCCJ07001_1358
ERS445056_01543A0W68_07470
A0W68_07475
H730_08155
H730_08160
CJE1612AXW77_07090CjjRM3196_1426
CjjRM3196_1427
CjjRM3197_1426
CjjRM3197_1427
CJS3_1520A0W69_08305
A0W69_08310
QZ67_01568CCON33237_0118CIG2463D_1604CINS_0289CAQ16704_0313CSUB8521_0324
CSUB8521_0325
24CP0147441405956G1112220A0W68_07485310hypothetical proteinCj1429cCJJ81176_1429PJ16_07880N135_02265N564_02360N565_01467N755_02495PJ19_07875JJD26997_0708
JJD26997_1766
ERS445056_01544A0W68_07485A0W69_08315CSUB8521_0322
25CP0147441630835G111190A0W68_086701143hypothetical proteinCj0628
Cj1677
A911_03065
A911_08080
PJ16_09115
PJ16_03130
PJ17_03045N135_01995
N135_02340
N564_01935
N564_02445
N565_02035
N565_02535
N755_02065
N755_02575
PJ18_08515PJ19_03395
PJ19_09105
JJD26997_1370
JJD26997_1041
JJD26997_0096
M635_07495
M635_08800
RC25_02740CJH_03185
CJH_08755
CJSA_1588A0W68_08670AXW77_03075A0W69_00605QZ67_01813