Core phasome for species with 2+ genomes


Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


Core phasome for C. jejuni (n=35)

Core phasome count (groups in >= 60%) of strains: 10

In % of strainGene groupNameFunction
100.0 (2)8maf7carbonic anyhydrase
15Cj1295hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
94.3 (1)1Cj0045cHemerythrin-like iron-binding protein
88.6 (1)11cipAInvasion protein CipA
82.9 (1)19ubiE_3SAM-dependent methyltransferase
71.4 (1)12hxuB_1Heme/hemopexin transporter protein HuxB precursor
68.6 (1)20Cj1421cputative sugar transferase
65.7 (2)17maf1motility accessory factor
31ansAL-asparaginase
60.0 (1)4Cj0170SAM-dependent methyltransferase
57.1 (2)6A911_t08342No annotation data
16Cj1296aminoglycoside N3'-acetyltransferase
51.4 (1)3Cj0067chlorohydrolase

Core phasome for C. coli (n=10)

Core phasome count (groups in >= 60%) of strains: 12

In % of strainGene groupNameFunction
100.0 (2)1Cj0045cHemerythrin-like iron-binding protein
8maf7carbonic anyhydrase
90.0 (6)15Cj1295hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
167murDUDP-N-acetylmuramoylalanine--D-glutamate ligase
168N149_0842Hypothetical protein
169N149_0993Phosphoglycerol transferase
170hxuAfilamentous hemagglutinin
98vacAautotransporter
70.0 (4)4Cj0170SAM-dependent methyltransferase
17maf1motility accessory factor
29lgrAformyl transferase domain protein
45PJ17_069353-oxoacyl-ACP synthase

Core phasome for C. concisus (n=2)

Core phasome count (groups in >= 60%) of strains: 0

No core phasome identified


Core phasome for C. fetus (n=8)

Core phasome count (groups in >= 60%) of strains: 27

In % of strainGene groupNameFunction
100.0 (14)256CFT03427_1684hypothetical protein
15Cj1295hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
19ubiE_3SAM-dependent methyltransferase
231CFT03427_0876SAM-dependent methyltransferase
232CFT03427_0951hypothetical protein
234CFT03427_1021MCP-domain signal transduction protein
235CFT03427_1099putative membrane protein
236CFT03427_1115autotransporter domain protein
239CFT03427_1510ATP-grasp domain protein
241CFT03427_1512SAM-dependent methyltransferase
249CFT03427_1562probable 3-demethylubiquinone-9 3-methyltransferase
252CFT03427_1573hypothetical protein
253CFT03427_1574hypothetical membrane protein
255CFT03427_1581SAM-dependent methyltransferase
87.5 (10)230menA1,4-dihydroxy-2-naphthoate octaprenyltransferase
238CFT03427_1442transformation system protein
242CFT03427_1545radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family
243CFT03427_1551short-chain dehydrogenase/reductase family protein
244CFT03427_1554methyltransferase
247CFT03427_1558radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)
248CFT03427_1559hypothetical protein
250CFT03427_1565hypothetical protein
251CFT03427_1566hypothetical protein
254CFT03427_1577hypothetical membrane protein
75.0 (1)246CFT03427_1556formyltransferase domain-containing protein
62.5 (2)259CFF04554_0871putative type II secretion system protein
263CFF04554_12554HB_MCP sensor-containing MCP-domain signal transduction protein

Core phasome for C. hyointestinalis (n=2)

Core phasome count (groups in >= 60%) of strains: 13

In % of strainGene groupNameFunction
100.0 (13)15Cj1295hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
321CHL_0019phosphoglycerol transferase
332CHL_0231ATP-grasp domain-containing protein
333CHL_0238WbqC family protein
334CHL_0240aminotransferase, DegT/DnrJ/EryC1/StrS family
337CHL_0424TonB-dependent receptor
340cmoAcarboxy-S-adenosyl-L-methionine synthase
341CHL_0706diguanylate cyclase
342CHL_0780autotransporter domain protein
348CHL_0862membrane bound O-acyl transferase, MBOAT family
354CHL_1325receiver domain protein
357fla1flagellin
233CFT03427_0957type III restriction/modification system, mod subunit

Core phasome for C. iguaniorum (n=3)

Core phasome count (groups in >= 60%) of strains: 20

In % of strainGene groupNameFunction
100.0 (7)404CIG1485E_0289TonB-dependent receptor
410CIG1485E_1167hypothetical membrane protein
332CHL_0231ATP-grasp domain-containing protein
334CHL_0240aminotransferase, DegT/DnrJ/EryC1/StrS family
15Cj1295hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
348CHL_0862membrane bound O-acyl transferase, MBOAT family
236CFT03427_1115autotransporter domain protein
66.7 (13)402CIG1485E_0074hypothetical type II secretion system protein
405CIG1485E_0543hypothetical protein
406CIG1485E_0617autotransporter domain protein
407CIG1485E_0654autotransporter domain protein
409CIG1485E_1074hypothetical protein
412CIG1485E_1451hypothetical protein
29lgrAformyl transferase domain protein
321CHL_0019phosphoglycerol transferase
342CHL_0780autotransporter domain protein
215CCON33237_1757type II restriction endonuclease
362CHH_0019putative membrane protein, EpsG family
363CHH_0020glycosyltransferase, family 1
381CHH_0814outer membrane beta-barrel domain protein

Core phasome for C. lari (n=7)

Core phasome count (groups in >= 60%) of strains: 2

In % of strainGene groupNameFunction
100.0 (1)443UPTC4110_0710No annotation data
71.4 (1)446UPTC4110_1471MCP-domain signal transduction protein
57.1 (2)19ubiE_3SAM-dependent methyltransferase
444UPTC4110_0958autotransporter domain protein

Core phasome for C. subantarcticus (n=2)

Core phasome count (groups in >= 60%) of strains: 22

In % of strainGene groupNameFunction
100.0 (22)513CSUB8521_0371No annotation data
4Cj0170SAM-dependent methyltransferase
517CSUB8521_1458type III restriction/modification enzyme, mod subunit
519CSUB8521_1494hypothetical protein, possible glyoxalase/bleomycin resistance protein
8maf7carbonic anyhydrase
172N149_1457autotransporter domain protein
11cipAInvasion protein CipA
15Cj1295hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
16Cj1296aminoglycoside N3'-acetyltransferase
17maf1motility accessory factor
19ubiE_3SAM-dependent methyltransferase
20Cj1421cputative sugar transferase
36A911_07000sugar transferase
169N149_0993Phosphoglycerol transferase
54PJ18_06805N-acetyl sugar amidotransferase
442UPTC4110_0579autotransporter domain protein
443UPTC4110_0710No annotation data
444UPTC4110_0958autotransporter domain protein
63JJD26997_0405methyltransferase
467Cla_0310putative capsular polysaccharide biosynthesis protein
476UPTC16712_0018autotransporter domain protein
110pseHUDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferase