Analysis of poly-G tracts in 81-176


Strain name: 81-176
Filepath: ../polyG/campy.new\36628-121504137.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00053876401G9None24-44bp upstream of CJJ81176_0082622conserved domain proteinCj0044cCJJ81176_0082A911_00215PJ16_00240PJ17_00245N135_00048N564_00042N565_00042N755_00042PJ18_00245PJ19_00240JJD26997_0059BN867_00430M635_04610UC78_0053C8J_0047CJ8421_00235RC25_00070CJM1cam_0053CJH_00255CJSA_0044ICDCCJ07001_48CJM1_0053MTVDSCj20_0052ERS445056_00049A0W68_00265H730_00235CJE0043CjjRM1285_0053AXW77_00235CjjRM3196_0053CjjRM3197_0053CJS3_0044A0W69_01115QZ67_00049N149_0048AB430_01415G157_00210VC76_00245AR446_08245ATE51_00094YSQ_00265YSS_00255YSU_00255A6K30_00260
1CP00053878355G99250CJJ81176_008659anion transporterCJJ81176_0086
2CP00053890586A101030CJJ81176_0105409amidohydrolase family proteinCj0067CJJ81176_0105A911_00320PJ16_00350PJ17_00350N135_00070N564_01795N565_01825N755_01830PJ18_00350PJ19_00350JJD26997_0077BN867_00590M635_04705UC78_0071C8J_0060CJ8421_00350RC25_00140CJM1cam_0069CJH_00355CJSA_0061ICDCCJ07001_62CJM1_0069MTVDSCj20_0065ERS445056_00069A0W68_00355CJE0064CjjRM1285_0071AXW77_00345CjjRM3196_0068CjjRM3197_0068CJS3_0067A0W69_01215QZ67_00074N149_0065AB430_01315G157_00325VC76_00335AR446_08320ATE51_00140YSQ_00350YSS_00350YSU_00335A6K30_00350CFT03427_1464CFF04554_1516CFF8240_1504CSG_16390CFV97608_1638CFTSP3_1528CFVI03293_1538CR44_07420CHAB381_1212CHL_0206CHH_1542CIG1485E_1454CIG2463D_1647CIG11343_1398CINS_0221UPTC4110_0229CONCH_0227UPTC3659_0246Cla_0229UPTC16701_0236UPTC16712_0235CD56_01155CPEL_0232CAQ16704_0233CSUB8521_0238CSUB8523_0232CUREO_0286CVOL_0223
3CP000538178080G9840CJJ81176_0206230conserved hypothetical proteinCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_00860
PJ19_07375
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451
4CP000538524723G10None26-118118bp upstream of CJJ81176_0590225conserved hypothetical proteinCJJ81176_0590CJH_02860ICDCCJ07001_510
5CP000538574473G91080CJJ81176_0646409hypothetical proteinCj0617CJJ81176_0646A911_03015PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_1051M635_07445CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910H730_03970CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_04500AR446_05110ATE51_02354YSQ_06210YSS_02830YSU_05855A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
UPTC16712_0815CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
6CP000538634743C99110CJJ81176_0708464invasion phenotype proteinCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575
7CP000538685347G910270CJJ81176_0758244conserved hypothetical proteinCj0735CJJ81176_0758A911_03590PJ16_03950PJ17_03565N135_00784N564_00720N565_00765N755_00762PJ18_03635PJ19_04215BN867_07520C8J_0703RC25_03405CJM1cam_0719CJH_03695CJSA_0699CJM1_0719ERS445056_00720A0W68_03465H730_04585CJE0835AXW77_03600CJS3_0787A0W69_04510QZ67_00749
8CP000538692429C11None122626bp downstream of CJJ81176_076547hypothetical proteinCJJ81176_0765CJE0843CJS3_0798
9CP0005381079096G1010280CJJ81176_1160315beta-1,4-N-acetylgalactosaminyltransferaseCJJ81176_1154
CJJ81176_1160
PJ16_05955PJ17_05850PJ19_06220ERS445056_01253A0W68_05945AXW77_05620A0W69_06905QZ67_01221YSS_06175CSUB8521_1425
10CP0005381228777G99150CJJ81176_1312252conserved hypothetical proteinCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350
11CP0005381236753G9None8-5151bp upstream of CJJ81176_1321192hypothetical proteinCJJ81176_1321CJ8421_06495CJE1495CJS3_1400N149_1265VC76_06540YSQ_02345
12CP0005381240069G99290CJJ81176_1325136formyl transferase domain proteinCJJ81176_1325RC25_06185ICDCCJ07001_1253ERS445056_01420CjjRM3196_1322CjjRM3197_1322
13CP0005381241155G9980CJJ81176_1327403conserved hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_1270
CINS_0772
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
14CP0005381259526G9980CJJ81176_1341416hypothetical proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0407
JJD26997_0368
BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_0797CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594CVOL_1289
15CP0005381341393G99190CJJ81176_1419257putative methyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
16CP0005381343529G109200CJJ81176_1421593putative glycosyltransferaseCj1421cCJJ81176_1421A911_06907
A911_06918
PJ16_07840N135_02255N564_01419N565_01459N755_01456PJ18_07260PJ19_07835JJD26997_1754M635_02775
M635_02880
UC78_1363CJ8421_07150RC25_06765CJH_07495CJSA_1352
CJSA_1363
ERS445056_01537A0W68_03560H730_08070
H730_08075
CjjRM1285_1417AXW77_07105
AXW77_06995
A0W69_04605QZ67_01556
17CP0005381349684G109220CJJ81176_1429308conserved hypothetical proteinCj1429cCJJ81176_1429PJ16_07880N135_02265N564_02360N565_01467N755_02495PJ19_07875JJD26997_0708
JJD26997_1766
ERS445056_01544A0W68_07485A0W69_08315CSUB8521_0322
18CP0005381352277G99300CJJ81176_1432569galactosyltransferaseCJJ81176_1432PJ17_07545M635_02980CJ8421_07205ERS445056_01547CjjRM1285_1442AXW77_07215YSS_07695
YSS_07620
CINS_0258CVOL_0293
19CP0005381358363G99200CJJ81176_1435603putative sugar transferaseCJJ81176_1421
CJJ81176_1435
CJ8421_07220
CJ8421_07150
ERS445056_01550H730_08070