Analysis of poly-G tracts in LMG 23910


Strain name: LMG 23910
Filepath: ../polyG/campy.new\242041-744805929.gb
Species: C. peloridis

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00776634808G10None484-3939bp upstream of CPEL_0032555GTPase family proteinCPEL_0032
1CP007766244461C9None443-171171bp upstream of CPEL_0265850hypothetical proteinUPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1467
CAQ16704_1182
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
2CP007766247391G10104630CPEL_02661057hemagglutinin domain-containing proteinUPTC3659_0800UPTC16701_0707
UPTC16701_1139
CPEL_0266
CPEL_1273
CPEL_0763
CPEL_0561
CPEL_0470
CAQ16704_1534
CAQ16704_0923
3CP007766289208G884850CPEL_0301697hypothetical protein (DUF2172 domain), putative M28 family zinc peptidaseCPEL_0301
4CP007766475451G10104630CPEL_04701147hemagglutinin domain-containing proteinCONCH_1474UPTC16701_0707
UPTC16701_1139
CPEL_0266
CPEL_1564
CPEL_1273
CPEL_0763
CPEL_0561
CPEL_0470
CAQ16704_1181
CAQ16704_0538
CAQ16704_1534
CAQ16704_1535
CAQ16704_0923
CAQ16704_0852
CAQ16704_1287
CSUB8523_0748
5CP007766569426G10104630CPEL_0561933hemagglutinin domain-containing proteinCPEL_0266
CPEL_1273
CPEL_0763
CPEL_0561
CPEL_0470
CAQ16704_1534
6CP007766776204G10104630CPEL_0763936hemagglutinin domain-containing proteinCONCH_1119CPEL_0266
CPEL_1273
CPEL_0763
CPEL_0561
CPEL_0470
CAQ16704_1534
CAQ16704_0923
7CP007766876332G9980CPEL_0870402hypothetical protein (DUF2920 domain)JJD26997_0407UPTC3659_0914Cla_0797UPTC16712_0815CPEL_0870CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_0932
8CP0077661062672G10104630CPEL_10351135hemagglutinin domain-containing proteinCPEL_1564
CPEL_1273
CPEL_1384
CPEL_1274
CPEL_1035
9CP0077661066213G10104630CPEL_10361125hemagglutinin domain-containing proteinUPTC3659_0779CPEL_1564
CPEL_0267
CPEL_1036
CAQ16704_0012
10CP0077661110081G9None-1-5050bp upstream of CPEL_108219No annotation data
11CP0077661122130G9None172-5050bp upstream of CPEL_1091742autotransporter domain proteinAXW77_06700N149_1457AB430_00255AR446_00760YSQ_01360YSU_01375CINS_0952UPTC3659_1199CPEL_1091CAQ16704_0970CSUB8521_1152CSUB8523_1258
12CP0077661293298G10101690CPEL_1266656phosphoglycerol transferaseN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
13CP0077661304139G10104630CPEL_1273910hemagglutinin domain-containing proteinCONCH_1119CPEL_1564
CPEL_1273
CPEL_0763
CPEL_0561
CPEL_0470
CPEL_1383
CAQ16704_1181
CAQ16704_0538
CAQ16704_0923
CAQ16704_0852
14CP0077661308313G10104630CPEL_12741346hemagglutinin domain-containing proteinUPTC4110_1147UPTC3659_1146CPEL_1564
CPEL_1384
CPEL_0470
CPEL_1274
CPEL_1035
CAQ16704_1181
CAQ16704_0852
CAQ16704_1287
15CP0077661311957G994630CPEL_12751173hemagglutinin domain-containing proteinCONCH_1119
CONCH_1474
Cla_1530UPTC16701_0686CD56_03710CPEL_1564
CPEL_1275
CAQ16704_0012
16CP0077661384095G99140CPEL_1344287hypothetical proteinCj1144cA911_05550PJ16_05965N135_02190N564_01110N565_02255N755_02315PJ19_06230UC78_1098CJSA_1086A0W68_05955H730_06670CJE1281CJS3_1186A0W69_06915CPEL_1344CAQ16704_1249CSUB8523_1524
17CP0077661424215G10104630CPEL_13831041hemagglutinin domain-containing proteinCPEL_1564
CPEL_1273
CPEL_1383
CAQ16704_0538
CAQ16704_0923
CAQ16704_0012
18CP0077661428353G10104630CPEL_13841334hemagglutinin domain-containing proteinUPTC4110_1147CPEL_1564
CPEL_1384
CPEL_1274
CPEL_1035
CAQ16704_1181
CAQ16704_0852
CAQ16704_1287
19CP0077661456463G9980CPEL_1412400hypothetical protein (DUF2920 domain)Cj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06525CJM1cam_1282CJSA_1243
CJSA_1244
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07025
H730_07465CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324CJS3_1400A0W69_07730
A0W69_07710
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195G157_02255VC76_06590
VC76_06540
AR446_01640
AR446_01635
ATE51_00952
ATE51_00958
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
20CP0077661457420G99160CPEL_1413197aminoglycoside N3'-acetyltransferaseCla_1310CPEL_1413CVOL_1291
21CP0077661468310G10101100CPEL_1427169UDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferaseCj1313CJJ81176_1330A911_06385PJ16_07315PJ17_06955N135_01402N564_01331N565_01370N755_01366PJ18_06760PJ19_07315JJD26997_0400BN867_13020M635_02255UC78_1262CJ8421_06540CJH_06645CJSA_1251ERS445056_01425A0W68_07070CJE1508CjjRM1285_1327AXW77_06465CJS3_1413A0W69_07750QZ67_01448N149_1276AB430_08230G157_02240VC76_06605AR446_01585ATE51_00938YSQ_02280YSS_07135YSU_02295A6K30_02260CINS_1277UPTC4110_1301CONCH_1276UPTC3659_1537Cla_1322
Cla_1325
UPTC16701_1295UPTC16712_1317CD56_06770CPEL_1427CAQ16704_1327
CAQ16704_1330
CSUB8521_1507
CSUB8521_1504
CSUB8523_1603
CSUB8523_1600
22CP0077661519561G994860CPEL_1475578phosphoethanolamine transferaseCINS_1320CPEL_1475CSUB8521_1554CSUB8523_1650
23CP0077661593663G101000CPEL_15571260type II restriction endonucleaseCj0031CJJ81176_0068A911_00150PJ16_00180PJ17_00185N135_00036N564_00030N565_00030N755_00030PJ18_00175PJ19_00180JJD26997_0043BN867_00300UC78_0040C8J_0034CJ8421_00165RC25_00010CJM1cam_0039CJH_00185CJSA_0032ICDCCJ07001_36CJM1_0039MTVDSCj20_0039ERS445056_00036A0W68_00175H730_00165CJE0031CjjRM1285_0039AXW77_00175CjjRM3196_0040CjjRM3197_0040CJS3_0031A0W69_01050QZ67_00037N149_0037AB430_01470G157_00150VC76_00185AR446_08190ATE51_00072YSQ_00185YSS_00195YSU_00200A6K30_00205CINS_0480UPTC4110_1431CONCH_1400UPTC3659_1667Cla_1457UPTC16701_1425UPTC16712_1445CD56_07380CPEL_1557CSUB8521_1649CSUB8523_1744CVOL_1446
24CP0077661608515G10104630CPEL_15641022hemagglutinin domain-containing proteinCPEL_1564
CPEL_1273
CPEL_1384
CPEL_1383
CPEL_1035
CAQ16704_0538
CAQ16704_1535
CAQ16704_0923
CAQ16704_0012
CAQ16704_1287
25CP0077661637810C9None446-146146bp upstream of CPEL_1598694MCP-domain signal transduction proteinUPTC4110_1471CONCH_1442UPTC3659_1708Cla_1499UPTC16701_1466UPTC16712_1501CD56_07595CPEL_1598CAQ16704_1501CSUB8521_1703CSUB8523_1804