Analysis of poly-G tracts in YH501


Strain name: YH501
Filepath: ../polyG/campy.new\735271-1026296924.gb
Species: C. coli

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01552852479G111200A6K30_002051266restriction endonucleaseCj0031CJJ81176_0068A911_00150PJ16_00180PJ17_00185N135_00036N564_00030N565_00030N755_00030PJ18_00175PJ19_00180JJD26997_0043BN867_00300UC78_0040C8J_0034CJ8421_00165RC25_00010CJM1cam_0039CJH_00185CJSA_0032ICDCCJ07001_36CJM1_0039MTVDSCj20_0039ERS445056_00036A0W68_00175H730_00165CJE0031CjjRM1285_0039AXW77_00175CjjRM3196_0040CjjRM3197_0040CJS3_0031A0W69_01050QZ67_00037N149_0037AB430_01470G157_00150VC76_00185AR446_08190ATE51_00072YSQ_00185YSS_00195YSU_00200A6K30_00205CINS_0480UPTC4110_1431CONCH_1400UPTC3659_1667Cla_1457UPTC16701_1425UPTC16712_1445CD56_07380CPEL_1557CSUB8521_1649CSUB8523_1744CVOL_1446
1CP01552868472G101010A6K30_00265268iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
2CP015528347161G1211760A6K30_01745247acylneuraminate cytidylyltransferaseJJD26997_0722YSQ_01770A6K30_01745UPTC4110_0308
3CP015528404112G9None98-5151bp upstream of A6K30_02030755autotransporter outer membrane beta-barrel domain-containing proteinBN867_13460UC78_1307C8J_1278CJM1cam_1321CJH_06895ICDCCJ07001_1296CJM1_1321MTVDSCj20_1341ERS445056_01472AXW77_06700CjjRM3196_1363CjjRM3197_1363N149_1324AB430_08465G157_02025VC76_06820AR446_01420ATE51_00842YSQ_02050YSS_07370YSU_02085A6K30_02030
4CP015528424995G9980A6K30_02125416hypothetical proteinCj1342cCJJ81176_1341A911_03015
A911_06515
PJ16_03080
PJ16_07450
PJ17_02995
PJ17_07090
N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445
PJ19_03345
JJD26997_0407
JJD26997_0368
BN867_13260M635_07445
M635_02400
UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277
CJSA_0585
ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215
A0W68_02910
H730_07660CJE0720
CJE1531
CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436
CJS3_0607
A0W69_07875
A0W69_03955
N149_0590
N149_1304
AB430_08370
AB430_04500
G157_02115VC76_06720AR446_01515ATE51_00880
ATE51_02354
YSQ_02145YSS_07275YSU_02180A6K30_02125CCON33237_0365CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_0797CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
5CP015528436748G99170A6K30_02155296PseD proteinQZ67_01453
6CP015528448932G12None18-3636bp upstream of A6K30_0222082hypothetical proteinM635_02300AXW77_06505ATE51_00922YSS_07175A6K30_02220
7CP015528452935G9None17-4848bp upstream of A6K30_02235253PseD protein
8CP015528459605G9980A6K30_02275403carbonic anhydraseCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1504CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07710
A0W69_07730
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0772
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0853
CSUB8521_0852
CSUB8523_0940CVOL_1290
9CP015528460667G1111450A6K30_02280613-oxoacyl-ACP synthase
10CP015528463202G99290A6K30_02295239formyl transferaseCJJ81176_1325PJ17_06920JJD26997_0414C8J_1241RC25_06185CJM1cam_1280ICDCCJ07001_1253CJM1_1280MTVDSCj20_1304ERS445056_01420CJE1498CjjRM3196_1322CjjRM3197_1322CJS3_1403N149_1269G157_02280VC76_06560AR446_01620YSQ_02320YSU_02350A6K30_02295CVOL_1294
11CP015528466554G9980A6K30_0231064carbonic anhydrase
12CP015528473537G910150A6K30_02350435aminopeptidaseCj1295CJJ81176_1312
CJJ81176_1313
A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
13CP015528547396A13None170-2626bp upstream of A6K30_02755515filamentous hemagglutinin15-537360 [0]AB430_07445FB1 [0]AR446_02110RM4661 [0]YSU_02825A6K30_02755
14CP015528547409G13None170-1313bp upstream of A6K30_02755515filamentous hemagglutinin15-537360 [0]AB430_07445FB1 [0]AR446_02110RM4661 [0]YSU_02825A6K30_02755
15CP015528729911G981690A6K30_03670656hypothetical proteinN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CINS_1119CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
16CP015528888196A11None168-231231bp upstream of A6K30_0444086hypothetical proteinN149_0842G157_04435A6K30_04440
17CP015528888207G9None168-220220bp upstream of A6K30_0444086hypothetical proteinN149_0842G157_04435A6K30_04440
18CP0155281133531G101180A6K30_05725215hypothetical proteinA911_03015PJ16_03080PJ17_02995PJ19_03345M635_07445A0W68_02910CJE0720CJS3_0607A0W69_03955N149_0590ATE51_02354YSQ_06210A6K30_05725
19CP0155281303740C11None16744bp downstream of A6K30_06570402UDP-N-acetylmuramoylalanine--D-glutamate ligaseCj0432cCJJ81176_0458A911_02105PJ16_02130PJ17_02125N135_00480N564_00413N565_01975N755_00462PJ18_02130PJ19_02395JJD26997_1512BN867_04040M635_06500UC78_0416C8J_0407CJ8421_02165RC25_02140CJM1cam_0416CJH_02185CJSA_0404ICDCCJ07001_398CJM1_0416MTVDSCj20_0406ERS445056_00429A0W68_02095H730_02735CJE0482CjjRM1285_0408AXW77_02090CjjRM3196_0418CjjRM3197_0418CJS3_0421A0W69_03010QZ67_00437N149_0430AB430_03710G157_06485VC76_02270AR446_05945ATE51_03348YSQ_07700YSS_01955YSU_06710A6K30_06570CCC13826_0566CCON33237_1498CCV52592_1046CFT03427_1322CFF04554_1374CFF8240_1358CSG_14960CFV97608_1497CFTSP3_1385CFVI03293_1397CR44_06690CHAB381_1595CHL_0518CHH_1368CIG1485E_1368CIG2463D_1559CIG11343_1315CINS_0263UPTC4110_0272CONCH_0268UPTC3659_0286Cla_0266UPTC16701_0273UPTC16712_0275CD56_01340CPEL_0278CAQ16704_0277CSUB8521_0285CSUB8523_0279CUREO_1551CVOL_0263
20CP0155281483775A1091790A6K30_07545159cysteine permeaseCj0249CJJ81176_0276A911_01200PJ16_01185PJ17_01225N135_00157N564_00234N565_00230N755_00285PJ18_00795PJ19_01185JJD26997_0249BN867_02240M635_05525UC78_0236C8J_0226CJ8421_01230RC25_00965CJM1cam_0231CJH_01250CJSA_0226ICDCCJ07001_230CJM1_0231MTVDSCj20_0225ERS445056_00240A0W68_01205H730_01540CJE0299CjjRM1285_0229AXW77_01190CjjRM3196_0237CjjRM3197_0237CJS3_0239A0W69_02080QZ67_00165N149_0241AB430_02715G157_07480VC76_01280AR446_06920ATE51_03858YSQ_08710YSS_08440YSU_07690A6K30_07545CCC13826_1699CCON33237_1686CCV52592_0632CFT03427_0157CFF04554_0152CFF8240_0150CSG_1550CFV97608_0154CFTSP3_0155CFVI03293_0152CR44_00795CHL_1715CHH_0157CIG1485E_0165CIG2463D_0168CIG11343_0114CINS_0136UPTC4110_0148CONCH_0144UPTC3659_0166Cla_0148UPTC16701_0156UPTC16712_0154CD56_00745CPEL_0152CAQ16704_0147CSUB8521_0158CSUB8523_0152CVOL_0141