Analysis of poly-G tracts in 1485E


Strain name: 1485E
Filepath: ../polyG/campy.new\201601-669187427.gb
Species: C. iguaniorum

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP0090438652C992360CIG1485E_0008685autotransporter domain proteinCIG1485E_0008
CIG1485E_0796
CIG1485E_1594
CIG1485E_1021
CIG1485E_0473
CIG2463D_0797
CIG2463D_1074
CIG2463D_1791
CIG2463D_0008
CIG2463D_0474
CIG11343_0424
CIG11343_0986
1CP00904328581A10None362-2222bp upstream of CIG1485E_0022349hypothetical membrane protein, EpsG familyCHH_0019CIG1485E_0022CIG2463D_0022
2CP00904328591G91036201485E [0]354No data, identified by scriptCHH_0019CIG1485E_0022CIG2463D_0022
3CP00904330664G993630CIG1485E_0023371glycosyltransferase, family 1CHL_0081CHH_0020CIG1485E_0023CIG2463D_0023
4CP00904335073G893940CIG1485E_0027213sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD familyCCC13826_2304CIG1485E_0027
5CP00904338757G993950CIG1485E_0031310formyltransferase domain-containing proteinJJD26997_0383CIG1485E_0031Cla_1233
6CP00904344062G99600CIG1485E_0037228deacetylase, PIG-L familyJJD26997_0382CIG1485E_0037CONCH_0308Cla_1232
7CP00904345527G10103960CIG1485E_0039251glycosyl amidation-associated protein WbuZCIG1485E_0039
8CP00904348029C10103970CIG1485E_0042239SAM-dependent methyltransferaseCIG1485E_0042
9CP00904349153G99540CIG1485E_0043370N-acetyl sugar amidotransferaseCj1324A911_06435PJ16_07370PJ17_07010N135_01412N564_02245N565_02335N755_02395PJ19_07370JJD26997_0389M635_02315CJ8421_06605ERS445056_01436A0W68_07120H730_07580AXW77_06525A0W69_07800N149_1288AB430_08285G157_02195VC76_06650ATE51_00916YSQ_02225YSS_07195A6K30_02200CIG1485E_0043CINS_1196CD56_06370CSUB8521_1419CSUB8523_1519
10CP00904351668G993980CIG1485E_0045258CMP-N-acetylneuraminic acid synthetaseCIG1485E_0045CD56_06350
11CP00904356276G993990CIG1485E_0050419hypothetical proteinCIG1485E_0050
12CP00904357551G9104000CIG1485E_0051431No annotation dataCIG1485E_0051
13CP00904358813G884010CIG1485E_0052259SAM-dependent methyltransferaseCIG1485E_0052
14CP00904386120G10104020CIG1485E_0074155hypothetical type II secretion system proteinCIG1485E_0074CIG2463D_0077CIG11343_0034
15CP009043142699AT6None403-6363bp upstream of CIG1485E_0147289glucose-1-phosphate thymidylyltransferaseBN867_11270C8J_1076CJ8421_05645RC25_05360CJM1cam_1114CJM1_1114MTVDSCj20_1139N149_1392AR446_02545ATE51_01304YSQ_03235YSU_03265CCV52592_0305CIG1485E_0147UPTC4110_1219UPTC16701_1227
16CP009043275581G994040CIG1485E_0289690TonB-dependent receptorCFT03427_0282CFF04554_0275CFF8240_0276CSG_3570CFV97608_0277CFTSP3_0280CFVI03293_0275CR44_01420CIG1485E_0289CIG2463D_0294CIG11343_0236
17CP009043385501G1011150CIG1485E_0398424No annotation dataCj1295A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
18CP009043389364G1010290CIG1485E_0401244formyltransferase domain-containing proteinJJD26997_0414AR446_01620CHL_1689CIG1485E_0401CIG11343_0350
19CP009043465644C992360CIG1485E_0473685autotransporter domain proteinCIG1485E_0008
CIG1485E_0796
CIG1485E_1594
CIG1485E_1021
CIG1485E_0473
CIG2463D_0797
CIG2463D_1074
CIG2463D_1791
CIG2463D_0008
CIG2463D_0474
CIG11343_0424
CIG11343_0986
20CP009043530078G10None405-277277bp upstream of CIG1485E_0543286hypothetical proteinCIG1485E_0543CIG2463D_0543
21CP009043601145G884060CIG1485E_06171130autotransporter domain proteinCIG1485E_0617CIG2463D_0617
22CP009043656514G10104070CIG1485E_0654946autotransporter domain proteinCIG1485E_0654CIG2463D_0654
23CP009043810175C872360CIG1485E_0796639No annotation dataCIG1485E_0008
CIG1485E_0796
CIG1485E_0473
CIG2463D_0797
CIG2463D_0008
CIG2463D_0474
CIG11343_0424
24CP009043820977G984080CIG1485E_0808232No annotation dataCIG1485E_0808
25CP009043955154G883480CIG1485E_0946484membrane bound O-acyl transferase, MBOAT familyBN867_11440C8J_1093CJM1cam_1130CJM1_1130MTVDSCj20_1154CCV52592_0864CFT03427_1695CFF04554_1747CFF8240_1751CSG_18810CFV97608_1874CFTSP3_1760CFVI03293_1771CR44_08610CHL_0862CHH_0868CIG1485E_0946CIG2463D_0946CIG11343_0927CINS_1186UPTC4110_1214CD56_06335CVOL_1205
26CP0090431026322T12None381-6161bp upstream of CIG1485E_1015210outer membrane beta-barrel domain proteinCHH_0814CIG1485E_1015CIG2463D_1068
27CP0090431033259G11112360CIG1485E_1021716autotransporter domain proteinCIG1485E_0008
CIG1485E_1021
CIG1485E_0473
CIG2463D_1074
CIG2463D_0008
CIG2463D_0474
CIG11343_0424
CIG11343_0986
28CP0090431083227G8None409-3434bp upstream of CIG1485E_1074115hypothetical proteinCIG1485E_1074CIG2463D_1166
29CP0090431170599G874100CIG1485E_1167411hypothetical membrane proteinCIG1485E_1167CIG2463D_1258CIG11343_1121
30CP0090431219690G10103420CIG1485E_1223775autotransporter domain proteinCHH_0746
CHH_1466
CIG1485E_1223CIG2463D_1314
31CP0090431219846G9None411-4545bp upstream of CIG1485E_122453hypothetical proteinCIG1485E_1224
32CP0090431440277C12None412-166166bp upstream of CIG1485E_1451597hypothetical proteinCHH_0151CIG1485E_1451
CIG1485E_0159
CIG2463D_1644
CIG2463D_0162
33CP0090431485265G10103320CIG1485E_1500391ATP-grasp domain-containing proteinCJH_06665CHL_0231CHH_1590CIG1485E_1499
CIG1485E_1500
CIG2463D_1693
CIG2463D_1692
CIG11343_1444
CIG11343_1443
34CP0090431489569G993340CIG1485E_1504340aminotransferase, DegT/DnrJ/EryC1/StrS familyCHL_0240CHH_1599CIG1485E_1504CIG2463D_1701CIG11343_1453
35CP0090431575194G10102360CIG1485E_1594815autotransporter domain proteinCIG1485E_1594CIG2463D_1791
CIG2463D_0008
CIG2463D_0474
CIG11343_0424
36CP0090431588250C883210CIG1485E_1607537phosphoglycerol transferaseCHL_0019CHH_1700CIG1485E_1607CIG2463D_1804CIG11343_1542