Analysis of poly-G tracts in RM11343


Strain name: RM11343
Filepath: ../polyG/campy.new\740411-1028385505.gb
Species: C. iguaniorum

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01557730528G8None426-1111bp upstream of CIG11343_0027233glycosyltransferase, family 2CIG11343_0027
1CP01557758477G884270CIG11343_0071124formyltransferase domain-containing proteinCIG11343_0071
2CP01557788639AG673590CIG11343_0101389No annotation dataCHL_1698CIG11343_0101
3CP015577129049A10None428-107107bp upstream of CIG11343_0143167No annotation dataCIG11343_0143
4CP015577209247G994040CIG11343_0236691TonB-dependent receptorCFT03427_0282CFF04554_0275CFF8240_0276CSG_3570CFV97608_0277CFTSP3_0280CFVI03293_0275CR44_01420CIG1485E_0289CIG2463D_0294CIG11343_0236
5CP015577278510GA664290CIG11343_0309417cytosine-specific DNA methyltransferaseCIG11343_0309
6CP015577318741G88150CIG11343_0347423putative Zn-peptidase, M28 family (DUF2172 domain)Cj1295A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
7CP015577322603G99290CIG11343_0350244formyltransferase domain-containing proteinJJD26997_0414AR446_01620YSU_02350CHL_1689CIG1485E_0401CIG11343_0350
8CP015577504875T11None377-4848bp upstream of CIG11343_0542530MCP-domain signal transduction protein (DUF3365 domain)CFT03427_0567CFF04554_0557CFF8240_0562CSG_2080CFV97608_0608CFTSP3_0568CFVI03293_0560CR44_02890CHL_1523CHH_0490CIG1485E_0613CIG2463D_0613CIG11343_0542
9CP015577562521C10None430-2626bp upstream of CIG11343_059648hypothetical proteinCIG11343_0596
10CP015577565359G994310CIG11343_0600158No annotation dataCIG11343_0600
11CP015577715339C994320CIG11343_076071No annotation data
12CP015577819088G992150CIG11343_0874990type II restriction endonucleaseCCON33237_1757CIG2463D_0899CIG11343_0874
13CP015577878243G883480CIG11343_0927484membrane bound O-acyl transferase, MBOAT familyBN867_11440C8J_1093CJM1cam_1130CJM1_1130MTVDSCj20_1154CCV52592_0864CFT03427_1695CFF04554_1747CFF8240_1751CSG_18810CFV97608_1874CFTSP3_1760CFVI03293_1771CR44_08610CHL_0862CHH_0868CIG1485E_0946CIG2463D_0946CIG11343_0927CINS_1186CVOL_1205
14CP015577940397G872360CIG11343_0986318No annotation data
15CP015577999892G10104330CIG11343_1047293hypothetical proteinCIG11343_1047
16CP0155771068869G9104100CIG11343_1121411putative membrane proteinCIG1485E_1167CIG2463D_1258CIG11343_1121
17CP0155771291771G994340CIG11343_1355325glycosyltransferase, family 1CHAB381_0660CHL_0504CIG1485E_1411CIG2463D_1602CIG11343_1355
18CP0155771294173G993390CIG11343_1357356glycosyltransferase, family 1CHAB381_0661CHL_0502CIG1485E_1412CIG2463D_1603CIG11343_1357
19CP0155771371127G873320CIG11343_1444389No annotation dataCJH_06665CHL_0231CHH_1590CIG1485E_1499
CIG1485E_1500
CIG2463D_1693CIG11343_1444
CIG11343_1443
20CP0155771378757G884350CIG11343_1452220SAM-dependent methyltransferaseCJH_06680CHL_0239CHH_1598CIG1485E_1503CIG2463D_1700CIG11343_1452
CIG11343_1451
21CP0155771379455G993340CIG11343_1453340aminotransferase, DegT/DnrJ/EryC1/StrS familyCHL_0240CHH_1599CIG1485E_1504CIG2463D_1701CIG11343_1453
22CP0155771523693G994360CIG11343_1618324cytosine-specific DNA methyltransferaseERS445056_01151CHL_1829CIG1485E_1626CIG11343_1618