Analysis of poly-G tracts in Slaughter Beach


Strain name: Slaughter Beach
Filepath: ../polyG/campy.new\345011-827023298.gb
Species: C. lari

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP011372281848G99360CD56_01550563hypothetical proteinPJ17_07485G157_01745CD56_01550
1CP011372283078G991760CD56_01560432uridine kinasePJ18_07280CJE1606CJS3_1514QZ67_01560G157_01760VC76_07085ATE51_00730YSU_01815CINS_0296CD56_01560
2CP011372399196A13None441-5757bp upstream of CD56_02130799biotin sulfoxide reductaseCFT03427_0794
CFT03427_0438
CFF04554_0427CFF8240_0429CSG_5080CFV97608_0429CFTSP3_0438
CFTSP3_0849
CFVI03293_0426CR44_04040
CR44_02205
CHH_0419
CHH_0761
CIG1485E_0536CIG2463D_0536CINS_0409UPTC4110_0426CONCH_0433UPTC3659_0450Cla_0430UPTC16701_0426UPTC16712_0432CD56_02130CPEL_0439CAQ16704_0446CSUB8521_0462CSUB8523_0448CVOL_0420
3CP011372432813C9None-1-301301bp upstream of CD56_02285516S ribosomal RNA
4CP011372432822T11None-1-292292bp upstream of CD56_02285516S ribosomal RNA
5CP011372438816T10None114172172bp downstream of CD56_02305405S ribosomal RNAAL111168:[399643:399763](+)
AL111168:[701938:702058](+)
AL111168:[44740:44860](+)
CJJ81176_1728
CJJ81176_1708
CJJ81176_1715
A911_r08416
A911_r08414
A911_r08418
PJ16_04010
PJ16_00170
PJ16_02125
PJ17_02120
PJ17_03615
PJ17_00170
N135_00797
N135_00034
N135_00479
N564_02025
N564_01755
N564_01900
N565_01970
N565_01785
N565_02115
N755_001795
N755_02140
N755_01995
PJ18_03695
PJ18_02125
PJ18_00165
PJ19_04275
PJ19_02390
PJ19_00170
JJD26997_1519
JJD26997_0041
JJD26997_1263
HG428754:[390084:390202](+)
HG428754:[42978:43096](+)
HG428754:[731339:731457](+)
M635_04530
M635_06495
M635_08050
UC78_1665
UC78_1667
UC78_1666
C8J_Cj5SC
C8J_Cj5SA
C8J_Cj5SB
CJ8421_r08797
CJ8421_r08795
RC25_03450CJM1cam_0414
CJM1cam_0033
CJM1cam_0728
CJH_03765
CJH_02180
CJH_00175
CJSA_Cj5SC
CJSA_Cj5SB
CJSA_Cj5SA
ICDCCJ07001_30
ICDCCJ07001_719
ICDCCJ07001_397
CJM1_0729
CJM1_0415
CJM1_0033
MTVDSCj20_0033
MTVDSCj20_0405
MTVDSCj20_0764
A0W68_02090
A0W68_00165
A0W68_04020
H730_r10084
H730_r10080
H730_r10082
CjjRM1285_0713
CjjRM1285_0407
CjjRM1285_0033
AXW77_03645
AXW77_02085
AXW77_00165
CjjRM3196_0417
CjjRM3196_0034
CjjRM3196_0768
CjjRM3197_0768
CjjRM3197_0034
CjjRM3197_0417
CJS3_1812
CJS3_1831
CJS3_1818
A0W69_04630
A0W69_03005
A0W69_01040
QZ67_01994
QZ67_01924
QZ67_01894
N149_0693
N149_0428
N149_0033
AB430_05015
AB430_01480
AB430_03705
G157_r08604
G157_r08602
G157_r08600
VC76_03625
VC76_02260
VC76_00165
AR446_08170
AR446_04560
AR446_05950
ATE51_03349
ATE51_00065
ATE51_02145
YSQ_00175
YSQ_05655
YSQ_07705
YSS_00175
YSS_01950
YSS_03435
YSU_06715
YSU_05305
YSU_00180
A6K30_06575
A6K30_00180
A6K30_00185
A6K30_05210
CCC13826_2320
CCC13826_2239
CCC13826_2256
CCON33237_1210
CCON33237_1680
CCON33237_1127
CCV52592_2229
CCV52592_2159
CCV52592_2186
CGRAC_1945
CGRAC_1561
CGRAC_0525
CHAB381_1799
CHAB381_1805
CHAB381_1802
CHL_1711
CHL_1198
CHL_1486
CHH_0527
CHH_0161
CHH_1197
CIG1485E_0652
CIG1485E_0169
CIG1485E_0584
CIG2463D_0652
CIG2463D_0584
CIG2463D_0172
CIG11343_0118
CIG11343_0580
CIG11343_0520
CINS_0441
CINS_1402
CINS_0532
UPTC4110_0525
UPTC4110_0462
UPTC4110_1432
CONCH_0525
CONCH_0469
CONCH_1404
UPTC3659_0487
UPTC3659_0553
UPTC3659_1668
Cla_0521
Cla_1461
Cla_0464
UPTC16701_1427
UPTC16701_0461
UPTC16701_0517
UPTC16712_0469
UPTC16712_1447
UPTC16712_0525
CD56_07385
CD56_02600
CD56_02305
CPEL_0475
CPEL_1559
CPEL_0566
CAQ16704_0485
CAQ16704_1460
CAQ16704_0544
CSUB8521_1653
CSUB8521_0558
CSUB8521_0499
CSUB8523_1748
CSUB8523_0544
CSUB8523_0485
CUREO_0635
CUREO_0489
CUREO_1556
CVOL_0549
CVOL_0456
CVOL_1447
6CP011372486607C8None-1-298298bp upstream of CD56_02580516S ribosomal RNA
7CP011372633493G9None480-1212bp upstream of CD56_03390167hypothetical proteinCCV52592_1962UPTC4110_0631UPTC3659_0716UPTC16701_0622CD56_03390
8CP011372695975G10104430Slaughter Beach [0]862No data, identified by scriptCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345M635_08855C8J_0908
C8J_0463
CJH_03700A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_03810
Slaughter Beach [0]
CD56_06005
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
9CP011372720509G10None481244244bp downstream of CD56_03805406MFS transporterCj0981cCJJ81176_1000A911_04735PJ16_05145PJ17_04790N135_01018N564_00948N565_00995N755_00987PJ18_04850PJ19_05410JJD26997_0808BN867_09710M635_00370UC78_0939C8J_0920CJ8421_04875RC25_04595CJM1cam_0956CJH_04920CJSA_0924ICDCCJ07001_941CJM1_0956MTVDSCj20_0984ERS445056_00966A0W68_05135H730_05790CJE1063CjjRM1285_1002AXW77_04800CjjRM3196_1002CjjRM3197_1002CJS3_1031A0W69_05805QZ67_01055N149_0918AB430_06190G157_04070VC76_04760AR446_03400ATE51_01658YSQ_04115YSS_05320YSU_04150A6K30_04060CINS_0674UPTC4110_0709CONCH_0706UPTC3659_0798Cla_0694UPTC16701_0705UPTC16712_0707CD56_03805CPEL_0762CAQ16704_1162CSUB8521_0741CSUB8523_0829CVOL_0688
10CP011372967088G11None482128128bp downstream of CD56_05085187aminobenzoate synthetaseCj0861cCJJ81176_0877A911_04175PJ16_04540PJ17_04165N135_00903N564_00835N565_00879N755_00876PJ18_04240PJ19_04805JJD26997_1009BN867_08570M635_08585UC78_0822C8J_0808CJ8421_04285RC25_03985CJH_04310CJSA_0815ICDCCJ07001_825MTVDSCj20_0866ERS445056_00840A0W68_04565H730_05180CJE0948CjjRM1285_0827AXW77_04180CjjRM3196_0879CjjRM3197_0879CJS3_0905A0W69_05205QZ67_00929N149_0858AB430_05885G157_04365VC76_04460AR446_03705ATE51_01780YSQ_04805YSS_04685YSU_04450A6K30_04365CINS_0951UPTC4110_0962CONCH_0938UPTC3659_1198Cla_0985UPTC16701_0953UPTC16712_0985CD56_05085CPEL_1087CAQ16704_0974CSUB8521_1151CSUB8523_1257CVOL_0958
11CP0113721155347G9None483241241bp downstream of CD56_06010165hypothetical proteinCJJ81176_1656N149_0089AB430_01185G157_00455VC76_00460AR446_08450ATE51_00190YSQ_00480YSS_00470YSU_00465A6K30_00480CINS_1126UPTC4110_1149CONCH_1121UPTC3659_1383Cla_1163UPTC16701_1141UPTC16712_1173CD56_06010CPEL_1276CAQ16704_1183CSUB8521_1340CSUB8523_1441CVOL_1140
12CP0113721310317G99190CD56_06730255methyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
13CP0113721313586G98450CD56_067503343-oxoacyl-ACP synthasePJ17_06935N149_1272G157_02260VC76_06585AR446_01605YSQ_02305YSS_07110YSU_02320A6K30_02280Cla_1314CD56_06750
14CP0113721442870T11None-1-281281bp upstream of CD56_07405516S ribosomal RNA
15CP0113721442881C9None-1-292292bp upstream of CD56_07405516S ribosomal RNA
16CP0113721475914C9None446-133133bp upstream of CD56_07595694hypothetical proteinUPTC4110_1471CONCH_1442UPTC3659_1708Cla_1499UPTC16701_1466UPTC16712_1501CD56_07595CPEL_1598CAQ16704_1501CSUB8521_1703CSUB8523_1804
17CP0113721514467G10104760CD56_077551283hypothetical proteinUPTC16712_0688
UPTC16712_0746
UPTC16712_0018
CD56_07755
CD56_05090