Analysis of poly-G tracts in RIGS 9880


Strain name: RIGS 9880
Filepath: ../polyG/campy.new\432751-909715533.gb
Species: C. ureolyticus

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP012195345674AG775310CUREO_0334369type I restriction-modification system, S subunitCUREO_0334
1CP012195483984AT675320CUREO_0477325selenophosphate synthetaseCj1504cCJJ81176_1496A911_07245PJ16_08245PJ17_07865N135_01595N564_01498N565_01534N755_01536PJ18_07640PJ19_08240M635_03210CJ8421_07525RC25_07075CJH_07875CJSA_1426ICDCCJ07001_1430A0W68_07815H730_08810CjjRM1285_1498AXW77_07450CjjRM3196_1504CjjRM3197_1504CJS3_1583A0W69_08650QZ67_01633G157_01365VC76_07435AR446_00780ATE51_00560YSU_01395A6K30_01415CCC13826_2135CCON33237_0330CCV52592_1781CFT03427_0349CFF04554_0340CFF8240_0340CSG_4200CFV97608_0341CFTSP3_0345CFVI03293_0339CR44_01755CGRAC_0521CHL_0316CHH_1469CIG1485E_0354CIG2463D_0359CIG11343_0298CUREO_0477
2CP012195930542G8None533143143bp downstream of CUREO_0913448anaerobic C4-dicarboxylate transporterCj0088CJJ81176_0123A911_00415PJ16_00450PJ17_00450N135_00088N564_00081N565_00080N755_00080PJ18_00450PJ19_00450JJD26997_0095BN867_00790M635_04785UC78_0089C8J_0081CJ8421_00450RC25_00245CJM1cam_0087CJH_00455CJSA_0079ICDCCJ07001_82CJM1_0087MTVDSCj20_0085ERS445056_00089A0W68_00455H730_00465CJE0083CjjRM1285_0089AXW77_00445CjjRM3196_0089CjjRM3197_0089CJS3_0087A0W69_01315QZ67_00093N149_0082AB430_01220G157_00420VC76_00425AR446_08415ATE51_00176YSQ_00445YSS_00435YSU_00430A6K30_00445CCC13826_0390CCON33237_1351CCV52592_1912CFT03427_1596CFF04554_1646CFF8240_1644CSG_17780CFV97608_1771CFTSP3_1661CFVI03293_1668CR44_08110CGRAC_1058CHAB381_1556CHH_1635CIG1485E_1543CIG2463D_1740CIG11343_1488CINS_0128UPTC4110_0140CONCH_0137UPTC3659_0157Cla_0139UPTC16701_0148UPTC16712_0147CD56_00705CPEL_0144CAQ16704_0139CSUB8521_0151CSUB8523_0145CUREO_0913CVOL_0134
3CP0121951538066C7None-1-472472bp upstream of CUREO_1560216S ribosomal RNA
4CP0121951574558T25None311-379379bp upstream of CUREO_1601384site-specific recombinase, phage integrase familyCSG_18870CFV97608_1880CFVI03293_1777CHAB381_0135CIG2463D_1138CUREO_1601