Analysis of poly-G tracts in NCTC 11845


Strain name: NCTC 11845
Filepath: ../polyG/campy.new\241831-744816895.gb
Species: C. lari

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00777545205G11None454-3232bp upstream of UPTC3659_0047281GTP binding proteinUPTC3659_0047CSUB8521_0041
1CP00777561286G10None455-6666bp upstream of UPTC3659_00692048autotransporter domain proteinUPTC3659_0069
2CP00777561373G12124550UPTC3659_00692048autotransporter domain proteinUPTC3659_0069
3CP007775252239G994560UPTC3659_0279594hypothetical protein (DUF2972 domain)UPTC3659_0279
4CP007775292588A10104570UPTC3659_03181484glycosyltransferase, family 1UPTC3659_0318
UPTC3659_0318
CPEL_0314
CPEL_0314
5CP007775292617A10104580UPTC3659_03181484glycosyltransferase, family 1
6CP007775344775AT764590UPTC3659_0363422No annotation dataUPTC3659_0363
7CP007775467020C9None-1-299299bp upstream of UPTC3659_0483216S ribosomal RNA
8CP007775498981G774600UPTC3659_0516500lysyl-tRNA synthetaseCj0401CJJ81176_0424A911_01950PJ16_01950PJ17_01950N135_00445N564_00384N565_00433N755_00433PJ18_01950PJ19_02215JJD26997_1556BN867_03740M635_06315UC78_0387C8J_0376CJ8421_02010RC25_01990CJM1cam_0379CJH_01995CJSA_0374ICDCCJ07001_365CJM1_0379MTVDSCj20_0371ERS445056_00395A0W68_01940H730_02570CJE0450CjjRM1285_0377AXW77_01915CjjRM3196_0383CjjRM3197_0383CJS3_0391A0W69_02830QZ67_00403N149_0398AB430_03540G157_06635VC76_02100AR446_06110ATE51_03412YSQ_07880YSS_01780YSU_06880A6K30_06735CCC13826_0225CCON33237_1548CCV52592_1349CFT03427_1120CFF04554_1169CFF8240_1142CSG_8510CFV97608_1194CFTSP3_1182CFVI03293_1139CR44_05695CGRAC_1854CHAB381_1646CHL_0653CHH_0618CIG1485E_1187CIG2463D_1278CIG11343_1141CINS_0554UPTC4110_0491CONCH_0494UPTC3659_0516Cla_0488UPTC16701_0486UPTC16712_0494CD56_02430CPEL_0590CAQ16704_0508CSUB8521_0523CSUB8523_0509CUREO_1401CVOL_0573
9CP007775523334G994430UPTC3659_0546867hypothetical proteinUPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1467
CAQ16704_1182
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
10CP007775591642G994420UPTC3659_0606711autotransporter domain proteinUPTC4110_0579CONCH_0577UPTC3659_0606CSUB8521_0608CSUB8523_0595CVOL_0507
11CP007775591815T13None442-8989bp upstream of UPTC3659_0606711autotransporter domain proteinUPTC4110_0579CONCH_0577UPTC3659_0606CSUB8521_0608CSUB8523_0595CVOL_0507
12CP007775744449G994430UPTC3659_0778867hypothetical proteinUPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1467
CAQ16704_1182
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
13CP007775768847G994430UPTC3659_0799867hypothetical proteinUPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1467
CAQ16704_1182
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
14CP007775780807A10104610UPTC3659_0805418MiaB-like tRNA modifying enzymeCj1006cCJJ81176_1024A911_04855PJ16_05270PJ17_04910N135_01041N564_00972N565_01018N755_01011PJ18_04975PJ19_05535JJD26997_0783BN867_09940M635_00495UC78_0962C8J_0943CJ8421_04990RC25_04720CJM1cam_0979CJH_05040CJSA_0949ICDCCJ07001_965CJM1_0979MTVDSCj20_1007ERS445056_00993A0W68_05265H730_05910CJE1086CjjRM1285_1025AXW77_04930CjjRM3196_1025CjjRM3197_1025CJS3_1055A0W69_06220QZ67_01078N149_0939AB430_06295G157_03960VC76_04865AR446_03295ATE51_01616YSQ_04010YSS_05425YSU_04045A6K30_03955CCC13826_0085CCON33237_0904CCV52592_1067CFT03427_0853CFF04554_0862CFF8240_0856CSG_11330CFV97608_0921CFTSP3_0908CFVI03293_0893CR44_04335CGRAC_1007CHAB381_1072CHL_0911CHH_0963CIG1485E_0839CIG2463D_0838CIG11343_0818CINS_0678UPTC4110_0716CONCH_0710UPTC3659_0805Cla_0698UPTC16701_0712UPTC16712_0714CD56_03840CPEL_0767CAQ16704_0847CSUB8521_0746CSUB8523_0834CUREO_0761CVOL_0692
15CP007775815837G1094620UPTC3659_0845825No annotation dataUPTC3659_0845
16CP007775881555G8980UPTC3659_0914399No annotation dataCj0617CJJ81176_0646PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_0407CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_04500AR446_05110ATE51_02354YSS_02830YSU_05855CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1307
Cla_0797
UPTC16712_0815CPEL_0870CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
17CP0077751150819G994630UPTC3659_11461290hemagglutinin domain-containing proteinUPTC4110_1147CONCH_1474UPTC3659_1741
UPTC3659_0800
UPTC3659_0779
UPTC3659_1146
UPTC3659_1381
Cla_1530UPTC16712_1171
UPTC16712_0709
CD56_06000CPEL_1564
CPEL_1036
CPEL_0470
CPEL_1035
CAQ16704_1466
CAQ16704_1181
CAQ16704_1534
CAQ16704_1535
CAQ16704_1158
CAQ16704_0852
CAQ16704_1287
CSUB8521_1740
CSUB8521_0660
CSUB8523_0748
18CP0077751196156G9None444-5050bp upstream of UPTC3659_119471No annotation data
19CP0077751202687G9None172-5050bp upstream of UPTC3659_1199387No annotation dataUPTC3659_1199
20CP0077751370246G881690UPTC3659_1373656phosphoglycerol transferaseN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CINS_1119CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
21CP0077751386032G994430UPTC3659_1382867hypothetical proteinUPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1467
CAQ16704_1182
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
22CP0077751409899G99190UPTC3659_1405255SAM-dependent methyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
23CP0077751420016G994640UPTC3659_141582No annotation data
24CP0077751466018G994650UPTC3659_1458789phosphoethanolamine transferaseUPTC3659_1458
25CP0077751511032G994630UPTC3659_14981134hemagglutinin domain-containing proteinCONCH_0687UPTC3659_1498CPEL_1273CAQ16704_1181
CAQ16704_0538
CAQ16704_1535
CAQ16704_0923
CAQ16704_0852
CAQ16704_0012
26CP0077751548940G994660UPTC3659_1538246hypothetical proteinUPTC3659_1538CPEL_1430
27CP0077751713155C11None446-141141bp upstream of UPTC3659_1708694MCP-domain signal transduction proteinUPTC4110_1471CONCH_1442UPTC3659_1708Cla_1499UPTC16701_1466UPTC16712_1501CD56_07595CPEL_1598CAQ16704_1501CSUB8521_1703CSUB8523_1804
28CP0077751747572G994430UPTC3659_1740867hypothetical proteinUPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_0799
UPTC3659_0546
UPTC3659_1740
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1467
CAQ16704_1182
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139