Analysis of poly-G tracts in RM2100; ATCC BAA-1060D


Strain name: RM2100; ATCC BAA-1060D
Filepath: ../polyG/campy.new\40248-222538267.gb
Species: C. lari

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP000932282453G1094670Cla_0310648putative sugar transferase)A911_06911CJSA_1356A0W68_03535A0W69_04580Cla_0310CSUB8521_0341CSUB8523_0324
1CP000932284815G910190Cla_0312255conserved hypothetical proteinCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
2CP000932435935C10None438170170bp downstream of Cla_0459225molybdenum ABC transporter, permease proteinCCC13826_2282CCON33237_1646CCV52592_0581CFT03427_0368CFF04554_0358CFF8240_0359CSG_4390CFV97608_0359CFTSP3_0368CFVI03293_0357CR44_01850CGRAC_0353CHAB381_0313CHL_1667CHH_1453CIG1485E_0418CIG2463D_0419CIG11343_0368CINS_0436UPTC4110_0457CONCH_0463UPTC3659_0478Cla_0459UPTC16701_0456UPTC16712_0464CD56_02280CPEL_0469CAQ16704_0476CSUB8521_0490CSUB8523_0476CUREO_0193CVOL_0450
3CP000932488141C9None-1120120bp downstream of Cla_05164No annotation data
4CP000932756373A10None468-2121bp upstream of Cla_0795438conserved hypothetical integral membrane protein, MATE family efflux proteinCj0619CJJ81176_0648A911_03020PJ16_03085PJ17_03000N135_00671N564_00608N565_00653N755_00653PJ18_03090PJ19_03350JJD26997_1050BN867_06270M635_07450UC78_0601C8J_0579CJ8421_03025RC25_02980CJM1cam_0595CJH_03140CJSA_0587ICDCCJ07001_568CJM1_0595MTVDSCj20_0637ERS445056_00605A0W68_02915H730_03975CJE0722CjjRM1285_0591AXW77_03030CjjRM3196_0597CjjRM3197_0597CJS3_0609A0W69_03960QZ67_00635N149_0591AB430_04505G157_05660VC76_03120AR446_05105ATE51_02350YSQ_06205YSS_02835YSU_05850A6K30_05720CCC13826_0645CCON33237_1164CCV52592_0078CIG1485E_0679CIG2463D_0680CIG11343_0625CINS_0770UPTC4110_0816CONCH_0810UPTC3659_0913Cla_0795UPTC16701_0809UPTC16712_0814CD56_04335CPEL_0868CAQ16704_0744CSUB8521_0844CSUB8523_0931CVOL_0785
5CP000932757054G10980Cla_0796405conserved hypothetical protein (617 family)Cj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_1270
CINS_0772
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
6CP0009321190000G994690Cla_1236296formyltransferase, putativeCla_1236
7CP0009321192150A11114700Cla_123884No annotation data
8CP0009321192161G11114710Cla_123884No annotation data
9CP0009321254763G99160Cla_1301260conserved hypothetical proteinCj1298
Cj1296
CJJ81176_1315A911_06295
A911_06305
PJ16_07260
PJ16_07265
PJ17_06870N135_02210
N135_01386
N564_02215
N564_01316
N565_01353
N565_02305
N755_01348
N755_02360
PJ18_06680
PJ18_06685
PJ19_07260
PJ19_07265
JJD26997_0426
JJD26997_0425
BN867_12890M635_02175UC78_1248C8J_1239CJ8421_06460RC25_06175CJM1cam_1278CJH_06565
CJH_06570
CJSA_1236
CJSA_1234
ICDCCJ07001_1244CJM1_1278MTVDSCj20_1302ERS445056_01407A0W68_06985
A0W68_06990
H730_07430CJE1488CjjRM1285_1310
CjjRM1285_1311
AXW77_06390
AXW77_06395
CjjRM3196_1312CjjRM3197_1312CJS3_1394A0W69_07675
A0W69_07670
QZ67_01432
QZ67_01431
N149_1258AB430_08165G157_02335VC76_06505AR446_01675YSQ_02380YSS_07040
YSS_07035
YSU_02405A6K30_02345CFT03427_1427CFF04554_1479CFF8240_1463CSG_16000CFV97608_1601CFTSP3_1491CFVI03293_1501CR44_07230CHL_1687CHH_1505CIG1485E_0403CIG11343_0352CINS_1264UPTC4110_1292CONCH_1254UPTC3659_1527Cla_1301UPTC16712_1308CD56_06700CPEL_1413CSUB8521_1490
CSUB8521_0847
CSUB8523_0934
CSUB8523_1586
CVOL_1291
CVOL_1281
10CP0009321259809G9980Cla_1307410conserved hypothetical proteinCj0617CJJ81176_0646A911_03015PJ16_03080
PJ16_07450
PJ17_02995
PJ17_07090
N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_07445
PJ19_03345
JJD26997_1051
JJD26997_0368
BN867_13260M635_07445
M635_02400
UC78_1285C8J_1258CJ8421_03015CJM1cam_1299CJH_03130
CJH_06730
CJSA_0585ICDCCJ07001_1274
ICDCCJ07001_566
CJM1_1299MTVDSCj20_1320ERS445056_00604A0W68_02910H730_07660CJE0720
CJE1531
CjjRM1285_0590AXW77_06605
AXW77_03025
CjjRM3196_1342
CjjRM3196_0596
CjjRM3197_1342
CjjRM3197_0596
CJS3_1436
CJS3_0607
A0W69_03955QZ67_00633N149_0590AB430_08370
AB430_04500
G157_02115VC76_06720AR446_01515
AR446_05110
ATE51_00880
ATE51_02354
YSQ_06210
YSQ_02145
YSS_02830
YSS_07275
YSU_02180
YSU_05855
A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
UPTC16712_0815CPEL_0870CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
11CP0009321261977G1010160Cla_1310164conserved hypothetical proteinCla_1310CPEL_1413
12CP0009321265785G1112450Cla_13143363-oxoacyl-(acyl carrier protein) synthase III FabH2, putativePJ17_06935N149_1272G157_02260VC76_06585AR446_01605YSQ_02305YSS_07110YSU_02320A6K30_02280Cla_1314CD56_06750
13CP0009321266516G9980Cla_131581No annotation data
14CP0009321268013G9980Cla_1317222No annotation dataCla_1317
15CP0009321272614G991100Cla_1322163N-acetyltransferase specific for PseC product, UDP-4-amino-4,6-dideoxy-beta-L-AltNAcCj1313N135_01402N564_01331N565_01370N755_01366CINS_1277UPTC4110_1301CONCH_1276UPTC3659_1537Cla_1322
Cla_1325
UPTC16701_1295UPTC16712_1317CD56_06770CPEL_1427CAQ16704_1327
CAQ16704_1330
CSUB8521_1507
CSUB8521_1504
CSUB8523_1603
CSUB8523_1600
16CP0009321478808G11104430Cla_1529142No annotation data
17CP0009321517865TA10None4-5050bp upstream of Cla_1564225conserved hypothetical protein, possible methyltransferaseCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_00860
PJ19_07375
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451