Analysis of poly-G tracts in M1


Strain name: M1
Filepath: ../polyG/campy.new\371398-307746964.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00190073659G101010CJM1_0054254Putative iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
1CP001900522495G11None26-5454bp upstream of CJM1_0540560Putative uncharacterized proteinCJJ81176_0591BN867_05750C8J_0526CJM1cam_0540CJH_02860
CJH_02865
ICDCCJ07001_511
ICDCCJ07001_510
CJM1_0540MTVDSCj20_0583CjjRM1285_0537CjjRM3196_0543CjjRM3197_0543
2CP001900635641G99190CJM1_0659257Putative uncharacterized proteinCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
3CP001900641778C99110CJM1_0667463Invasion phenotype proteinCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575
4CP001900648785A1091350CJM1_0674313probable membrane proteinCj0692cCJJ81176_0715A911_03375PJ16_03735PJ17_03350N135_00740N564_00676N565_00721N755_00719PJ18_03420PJ19_04000JJD26997_1315BN867_07080M635_07790UC78_0667C8J_0659CJ8421_03405RC25_03190CJM1cam_0674CJH_03480CJSA_0656ICDCCJ07001_628CJM1_0674MTVDSCj20_0714ERS445056_00674A0W68_03250H730_04370CJE0791CjjRM1285_0655AXW77_03385CjjRM3196_0660CjjRM3197_0660CJS3_0743A0W69_04295QZ67_00705N149_0646AB430_04780G157_05380VC76_03395AR446_04795ATE51_02238YSQ_05890YSS_03200YSU_05540A6K30_05445
5CP001900689013G910270CJM1_0719180Putative periplasmic proteinCj0735CJJ81176_0758A911_03590PJ16_03950PJ17_03565N135_00784N564_00720N565_00765N755_00762PJ18_03635PJ19_04215BN867_07520C8J_0703RC25_03405CJM1cam_0719CJH_03695CJSA_0699CJM1_0719ERS445056_00720A0W68_03465H730_04585CJE0835AXW77_03600CJS3_0787A0W69_04510QZ67_00749
6CP001900696035C9None122626bp downstream of CJM1_0723562Putative outer-membrane proteinCj0742CJJ81176_0764PJ16_03985PJ17_03590N135_02060N564_02000N565_02090N755_02115PJ18_03670PJ19_04250BN867_07560M635_08925UC78_0931
UC78_0713
C8J_0706RC25_03425CJM1cam_0723CJSA_0706ICDCCJ07001_713CJM1_0723MTVDSCj20_0759ERS445056_00730A0W68_03500CjjRM1285_0708AXW77_03620CjjRM3196_0763CjjRM3197_0763A0W69_04545QZ67_00815
7CP0019001082259G99960CJM1_1116148Putative uncharacterized proteinBN867_11290C8J_1078CJ8421_05655RC25_05370CJM1cam_1116CJM1_1116MTVDSCj20_1141AR446_02560YSU_03280UPTC16701_1225
8CP0019001242319G99150CJM1_1277436Putative uncharacterized proteinCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
9CP0019001247344G9980CJM1_1282403Putative uncharacterized proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
10CP0019001250016G991100CJM1_1285187Acetyltransferase, GNAT familyCj1313CJJ81176_1330A911_06385PJ16_07315PJ17_06955N135_01402N564_01331N565_01370N755_01366PJ18_06760PJ19_07315JJD26997_0400BN867_13020M635_02255UC78_1262C8J_1246CJ8421_06540RC25_06210CJM1cam_1285CJH_06645CJSA_1251ICDCCJ07001_1259CJM1_1285MTVDSCj20_1308ERS445056_01425A0W68_07070H730_07515CJE1508CjjRM1285_1327AXW77_06465CjjRM3196_1330CjjRM3197_1330CJS3_1413A0W69_07750QZ67_01448N149_1276AB430_08230G157_02240VC76_06605AR446_01585ATE51_00938YSQ_02280YSS_07135YSU_02295A6K30_02260CINS_1277UPTC4110_1301CONCH_1276UPTC3659_1537UPTC16701_1295UPTC16712_1317CAQ16704_1327
11CP0019001266229G8980CJM1_1299415Putative uncharacterized proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0368BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
Cla_1307CSUB8521_1498
CSUB8521_0845
CSUB8523_1594CVOL_1289