Analysis of poly-G tracts in ATCC BAA-381


Strain name: ATCC BAA-381
Filepath: ../polyG/campy.new\38688-153803875.gb
Species: C. hominis

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP000776118945T57None311-403403bp upstream of CHAB381_0135385bacteriophage-related integraseCSG_18870CFV97608_1880CFVI03293_1777CHAB381_0135CIG2463D_1138CUREO_1601
1CP000776520400A10113120CHAB381_057058hypothetical proteinCHAB381_0570
2CP000776733856AG13123130CHAB381_0791520No annotation dataCHAB381_0791
3CP000776811497T14None314124124bp downstream of CHAB381_0867335conserved hypothetical proteinCHAB381_0867
4CP000776926869A10101220CHAB381_0988312ferrochelataseCj0503cCJJ81176_0531A911_02455PJ16_02510PJ17_02445N135_00553N564_00490N565_00538N755_00537PJ18_02505PJ19_02775JJD26997_1433BN867_05160M635_06880UC78_0490C8J_0467CJ8421_02470RC25_02455CJM1cam_0481CJH_02555CJSA_0473ICDCCJ07001_454CJM1_0481MTVDSCj20_0523ERS445056_00492A0W68_02465H730_03405CJE0610CjjRM1285_0477AXW77_02460CjjRM3196_0483CjjRM3197_0483CJS3_0496A0W69_03380QZ67_00513N149_0494AB430_04025G157_06140VC76_02640AR446_05580ATE51_03198YSQ_07330YSS_02325YSU_06340A6K30_06205CCC13826_0053CCON33237_1236CCV52592_0688CFT03427_0692CFF04554_0710CFF8240_0703CSG_12920CFV97608_0767CFTSP3_0751CFVI03293_0669CR44_03520CHAB381_0988CHL_1091CHH_1095CIG1485E_0754CIG2463D_0755CIG11343_0718UPTC4110_1048CONCH_1023UPTC3659_1282Cla_1069UPTC16701_1039UPTC16712_1069CD56_05495CPEL_1173CAQ16704_1058CSUB8521_0891CSUB8523_1049CUREO_0589CVOL_1043
5CP0007761060982TA8None315-4949bp upstream of CHAB381_1125182conserved hypothetical proteinCHAB381_1125
6CP0007761400488A15None316-287287bp upstream of CHAB381_1453232NAD-dependent deacetylase (Regulatory protein SIR2-like protein)Cj1050cCJJ81176_1071A911_05080PJ16_05495PJ17_05400N135_01086N564_01017N565_01063N755_01056PJ18_05200PJ19_05760BN867_10430M635_00710UC78_1007C8J_0991CJ8421_05215RC25_04950CJM1cam_1029CJH_05285CJSA_0993ICDCCJ07001_1012CJM1_1029MTVDSCj20_1056ERS445056_01157A0W68_05490H730_06225CJE1194CjjRM1285_1070AXW77_05175CjjRM3196_1069CjjRM3197_1069CJS3_1099A0W69_06445QZ67_01123N149_0986AB430_06535G157_03720VC76_05115AR446_03055ATE51_01518YSQ_03750YSS_05680YSU_03795A6K30_03715CHAB381_1453UPTC4110_1136CONCH_1107UPTC3659_1369Cla_1154UPTC16701_1127UPTC16712_1158CD56_05940CPEL_1262CAQ16704_1145CSUB8523_1425
7CP0007761408451G893170CHAB381_147078hypothetical proteinCHAB381_1470
8CP0007761416247G773180CHAB381_1478404NDP-N-acetyl-D-galactosaminuronic acid dehydrogenaseCGRAC_0730CHAB381_1478CIG1485E_0065CIG2463D_0068UPTC3659_0317CPEL_0313
9CP0007761512192A10None319109109bp downstream of CHAB381_157995hypothetical proteinCHAB381_1579
10CP0007761595957T10None6-3434bp upstream of CHAB381_167629No annotation dataNCTC 11168 [0]CJJ81176_1716A911_t08342PJ16_02315PJ17_02310N135_00518N564_00452N565_00503N755_00501PJ18_02315PJ19_02580JJD26997_1469M635_06685UC78_0452C8J_t0006CJ8421_t08717RC25_02325CJM1cam_0452CJH_02370CJSA_t0006ICDCCJ07001_430CJM1_0452MTVDSCj20_0443ERS445056_00466A0W68_02280H730_t10002CJE_tRNA-Thr-1CjjRM1285_0446AXW77_02275CjjRM3196_0456CjjRM3197_0456CJS3_1819A0W69_03195QZ67_01929N149_0467AB430_03895G157_t08574VC76_02455AR446_05760ATE51_03274YSQ_07515YSS_02140YSU_06525A6K30_06385CCC13826_2230CCON33237_0674CCV52592_2194CFT03427_1294CFF04554_1346CFF8240_1329CFV97608_1469CFTSP3_1357CFVI03293_1369CR44_06550CGRAC_1613CHAB381_1676CHL_1409CHH_1336CIG1485E_1341CIG2463D_1532CIG11343_1290CINS_0415UPTC4110_0433CONCH_0439UPTC3659_0456Cla_0436UPTC16701_0433UPTC16712_0439CD56_02165CPEL_0445CAQ16704_0452CSUB8521_0468CSUB8523_0454CUREO_1290CVOL_0426
11CP0007761650398T18183200CHAB381_172766hypothetical proteinCHAB381_1727