Strain name: RM16712
Filepath: ../polyG/campy.new\241861-744821558.gb
Species: C. lari
Created: 2018-09-09 12:25:37 (W. Europe Summer Time)
TractNo | Contig | Location | Tract | On length | Gene Group | Offset from gene | Gene | Length | Function | NCTC 11168 | 81-176 | PT14 | 00-0949 | 00-1597 | 00-2425 | 00-2426 | 00-2538 | 00-2544 | 00-6200 | 01-1512 | 269.97 | 4031 | 32488 | 35925B2 | 81116; NCTC 11828 | CG8421 | CJ677CC519 | CJM1cam | F38011 | IA3902 | ICDCCJ07001 | M1 | MTVDSCj20 | NCTC11351 | OD267 | R14 | RM1221 | RM1285 | RM3194 | RM3196 | RM3197 | S3 | WP2202 | YH001 | 15-537360 | BFR-CA-9557 | CVM N29710 | FB1 | HC2-48 | OR12 | RM1875 | RM4661 | RM5611 | YH501 | 13826 | ATCC 33237 | 525.92 | 03-427 | 04/554 | 82-40 | 84-112 | 97/608 | SP3 | cfvi03/293 | pet-3 | ATCC 33236 | ATCC BAA-381 | CCUG 27631 | LMG 9260 | 1485E | 2463D | RM11343 | NCTC 12927 | CCUG 22395 | LMG 11760 | NCTC 11845 | RM2100; ATCC BAA-1060D | RM16701 | RM16712 | Slaughter Beach | LMG 23910 | RM16704 | LMG 24374 | LMG 24377 | RIGS 9880 | LMG 24379 |
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0 | CP007778 | 16348 | G9 | 9 | 476 | 0 | UPTC16712_0018 | 1403 | autotransporter domain protein | UPTC16712_0688 UPTC16712_0746 UPTC16712_0018 | CD56_07755 CD56_05090 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1 | CP007778 | 46154 | G10 | None | 477 | 34 | 34bp downstream of UPTC16712_0041 | 72 | hypothetical protein | UPTC3659_0041 | UPTC16701_0040 | UPTC16712_0041 | CPEL_0033 | CSUB8521_0035 | CSUB8523_0035 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2 | CP007778 | 60985 | G9 | 9 | 478 | 0 | UPTC16712_0062 | 1242 | autotransporter domain protein | UPTC16712_0062 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3 | CP007778 | 283086 | G10 | 10 | 479 | 0 | UPTC16712_0309 | 724 | putative capsular polysaccharide biosynthesis protein | UPTC16712_0309 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4 | CP007778 | 442318 | C9 | None | -1 | -304 | 304bp upstream of UPTC16712_0465 | 2 | 16S ribosomal RNA | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5 | CP007778 | 495016 | C11 | None | -1 | -306 | 306bp upstream of UPTC16712_0521 | 2 | 16S ribosomal RNA | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6 | CP007778 | 660456 | G9 | 9 | 476 | 0 | UPTC16712_0688 | 1374 | autotransporter domain protein | UPTC16712_0688 UPTC16712_0746 UPTC16712_0018 | CD56_07755 CD56_05090 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7 | CP007778 | 683159 | G9 | 9 | 443 | 0 | UPTC16712_0708 | 870 | hypothetical protein | CJJ81176_0759 | A911_04670 | PJ16_05080 | PJ17_03570 | PJ19_05345 | M635_08855 | A0W68_05070 | H730_04590 | A0W69_05740 | UPTC4110_0710 UPTC4110_1148 | CONCH_0686 CONCH_1120 CONCH_1473 | UPTC3659_1740 UPTC3659_0546 UPTC3659_0799 UPTC3659_0778 UPTC3659_1382 | Cla_1529 | UPTC16701_0706 UPTC16701_0685 UPTC16701_1140 | UPTC16712_0708 UPTC16712_1172 | CD56_06005 Slaughter Beach [0] CD56_03810 | CPEL_0265 | CAQ16704_0853 CAQ16704_1159 CAQ16704_0537 CAQ16704_1182 CAQ16704_1467 CAQ16704_1533 | CSUB8521_0659 CSUB8521_1739 CSUB8521_1339 | CSUB8523_1841 CSUB8523_0747 CSUB8523_1440 | CVOL_1139 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8 | CP007778 | 725941 | G9 | 9 | 476 | 0 | UPTC16712_0746 | 1344 | autotransporter domain protein | UPTC16712_0688 UPTC16712_0746 UPTC16712_0018 | CD56_07755 CD56_05090 | CSUB8523_0810 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9 | CP007778 | 790070 | G10 | 10 | 8 | 0 | UPTC16712_0815 | 398 | hypothetical protein (DUF2920 domain) | Cj0617 | CJJ81176_0646 | JJD26997_0407 | CJ8421_03015 | CJH_03130 | CJSA_0585 | ICDCCJ07001_566 | ERS445056_00604 | A0W68_02910 | CJE0720 | CjjRM1285_0590 | CJS3_0607 | A0W69_03955 | QZ67_00633 | AB430_04500 | YSS_02830 | CINS_0771 CINS_1271 CINS_0859 | CONCH_0811 CONCH_1260 | UPTC3659_0914 | Cla_1307 Cla_0797 | UPTC16712_0815 | CPEL_0870 | CAQ16704_0743 | CSUB8521_1498 CSUB8521_0845 | CSUB8523_1594 CSUB8523_0932 | CVOL_1289 | |||||||||||||||||||||||||||||||||||||||||||||||||||
10 | CP007778 | 973234 | G9 | None | 444 | -50 | 50bp upstream of UPTC16712_0986 | 778 | autotransporter domain protein | UPTC4110_0958 | CONCH_0934 | UPTC3659_1194 | UPTC16712_0986 | CPEL_1082 | CAQ16704_0970 | CSUB8521_1148 | CSUB8523_1254 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11 | CP007778 | 1137940 | G11 | 11 | 359 | 0 | UPTC16712_1159 | 403 | type I restriction/modification system, S subunit | CHL_1698 | UPTC16712_1159 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12 | CP007778 | 1160793 | G9 | 9 | 443 | 0 | UPTC16712_1172 | 870 | hypothetical protein | CJJ81176_0759 | A911_04670 | PJ16_05080 | PJ17_03570 | PJ19_05345 | M635_08855 | A0W68_05070 | H730_04590 | A0W69_05740 | UPTC4110_0710 UPTC4110_1148 | CONCH_0686 CONCH_1120 CONCH_1473 | UPTC3659_1740 UPTC3659_0546 UPTC3659_0799 UPTC3659_0778 UPTC3659_1382 | Cla_1529 | UPTC16701_0706 UPTC16701_0685 UPTC16701_1140 | UPTC16712_0708 UPTC16712_1172 | CD56_06005 Slaughter Beach [0] CD56_03810 | CPEL_0265 | CAQ16704_0853 CAQ16704_1159 CAQ16704_0537 CAQ16704_1182 CAQ16704_1467 CAQ16704_1533 | CSUB8521_0659 CSUB8521_1739 CSUB8521_1339 | CSUB8523_1841 CSUB8523_0747 CSUB8523_1440 | CVOL_1139 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13 | CP007778 | 1294416 | G9 | 9 | 15 | 0 | UPTC16712_1302 | 432 | hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase | Cj1295 | CJJ81176_1312 | A911_06290 | PJ16_07255 | PJ17_06865 | N135_01383 | N564_01313 | N565_02300 | N755_01345 | PJ18_06675 | PJ19_07255 | JJD26997_0427 | BN867_12880 | M635_08875 | UC78_1247 | C8J_1238 | CJ8421_06450 | RC25_06170 | CJM1cam_1277 | CJH_06560 | CJSA_1233 | ICDCCJ07001_1243 | CJM1_1277 | MTVDSCj20_1301 | ERS445056_01406 | A0W68_06980 | H730_07425 | CJE1487 | CjjRM1285_1309 | AXW77_06385 | CjjRM3196_1311 | CjjRM3197_1311 | CJS3_1392 | A0W69_07665 | QZ67_01430 | N149_1256 | AB430_08160 | VC76_06500 | AR446_01680 | ATE51_00974 | YSQ_02385 | YSS_07030 | YSU_02410 | A6K30_02350 | CFT03427_1431 | CFF04554_1483 | CFF8240_1468 | CSG_16050 | CFV97608_1605 | CFTSP3_1495 | CFVI03293_1505 | CR44_07250 | CHL_1692 | CHH_1509 | CIG1485E_0398 | CIG2463D_0403 | CIG11343_0347 | CINS_1263 | UPTC4110_1286 | CONCH_1253 | UPTC3659_1523 | Cla_1300 | UPTC16701_1283 | UPTC16712_1302 | CD56_06695 | CPEL_1409 | CAQ16704_1312 | CSUB8521_1489 | CSUB8523_1585 | CVOL_1279 CVOL_1280 | |||||||
14 | CP007778 | 1299486 | G10 | 10 | 29 | 0 | UPTC16712_1306 | 252 | formyltransferase domain-containing protein | PJ17_06920 | JJD26997_0414 | C8J_1241 | RC25_06185 | CJM1cam_1280 | ICDCCJ07001_1253 | CJM1_1280 | MTVDSCj20_1304 | CJE1498 | CjjRM3196_1322 | CjjRM3197_1322 | CJS3_1403 | N149_1269 | G157_02280 | VC76_06560 | AR446_01620 | YSQ_02320 | YSU_02350 | A6K30_02295 | UPTC4110_1290 | Cla_1312 | UPTC16712_1306 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
15 | CP007778 | 1303918 | G9 | 9 | 63 | 0 | UPTC16712_1313 | 228 | methyltransferase | JJD26997_0404 JJD26997_0405 | ICDCCJ07001_1256 | CjjRM3196_1326 CjjRM3196_1327 | CjjRM3197_1327 CjjRM3197_1326 | CINS_1273 CINS_1274 | UPTC4110_1297 UPTC4110_1298 | CONCH_1273 CONCH_1272 | UPTC3659_1533 UPTC3659_1534 | UPTC16701_1292 UPTC16701_1291 | UPTC16712_1313 UPTC16712_1314 | CSUB8521_1501 CSUB8521_1500 | CSUB8523_1596 CSUB8523_1597 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16 | CP007778 | 1309333 | G10 | None | 130 | -4 | 4bp upstream of UPTC16712_1320 | 378 | pseudaminic acid biosynthesis protein | Cj1316c | CJJ81176_1333 | A911_06400 | PJ16_07330 | PJ17_06970 | N135_01405 | N564_01334 | N565_01373 | N755_01369 | PJ18_06775 | PJ19_07330 | JJD26997_0398 | BN867_13050 | M635_02270 | UC78_1265 | C8J_1250 | CJ8421_06555 | RC25_06230 | CJM1cam_1289 | CJH_06660 | CJSA_1254 | ICDCCJ07001_1262 | CJM1_1289 | MTVDSCj20_1312 | ERS445056_01428 | A0W68_07085 | H730_07530 | CJE1511 | CjjRM1285_1330 | AXW77_06480 | CjjRM3196_1333 | CjjRM3197_1333 | CJS3_1416 | A0W69_07765 | QZ67_01451 | N149_1279 | AB430_08245 | VC76_06625 | AR446_01570 | ATE51_00932 | YSQ_02265 | YSS_07150 | YSU_02280 | A6K30_02245 | CINS_1280 | UPTC4110_1304 | CONCH_1279 | Cla_1328 | UPTC16701_1298 | UPTC16712_1320 | CD56_06785 | CSUB8521_1510 | CSUB8523_1606 | CVOL_1311 | |||||||||||||||||||||||
17 | CP007778 | 1481314 | C10 | None | 446 | -154 | 154bp upstream of UPTC16712_1501 | 206 | No annotation data |