Gene group 130

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Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


#GroupNameLikely Function#PV in gene#Total PV#Total GenesC. jejuni
NCTC 11168
C. jejuni
81-176
C. jejuni
PT14
C. jejuni
00-0949
C. jejuni
00-1597
C. jejuni
00-2425
C. jejuni
00-2426
C. jejuni
00-2538
C. jejuni
00-2544
C. jejuni
00-6200
C. jejuni
01-1512
C. jejuni
269.97
C. jejuni
4031
C. jejuni
32488
C. jejuni
35925B2
C. jejuni
81116; NCTC 11828
C. jejuni
CG8421
C. jejuni
CJ677CC519
C. jejuni
CJM1cam
C. jejuni
F38011
C. jejuni
IA3902
C. jejuni
ICDCCJ07001
C. jejuni
M1
C. jejuni
MTVDSCj20
C. jejuni
NCTC11351
C. jejuni
OD267
C. jejuni
R14
C. jejuni
RM1221
C. jejuni
RM1285
C. jejuni
RM3194
C. jejuni
RM3196
C. jejuni
RM3197
C. jejuni
S3
C. jejuni
WP2202
C. jejuni
YH001
C. coli
15-537360
C. coli
BFR-CA-9557
C. coli
CVM N29710
C. coli
FB1
C. coli
HC2-48
C. coli
OR12
C. coli
RM1875
C. coli
RM4661
C. coli
RM5611
C. coli
YH501
C. concisus
13826
C. concisus
ATCC 33237
C. curvus
525.92
C. fetus
03-427
C. fetus
04/554
C. fetus
82-40
C. fetus
84-112
C. fetus
97/608
C. fetus
SP3
C. fetus
cfvi03/293
C. fetus
pet-3
C. gracilis
ATCC 33236
C. hominis
ATCC BAA-381
C. hyointestinalis
CCUG 27631
C. hyointestinalis
LMG 9260
C. iguaniorum
1485E
C. iguaniorum
2463D
C. iguaniorum
RM11343
C. insulaenigrae
NCTC 12927
C. lari
CCUG 22395
C. lari
LMG 11760
C. lari
NCTC 11845
C. lari
RM2100; ATCC BAA-1060D
C. lari
RM16701
C. lari
RM16712
C. lari
Slaughter Beach
C. peloridis
LMG 23910
C. sp.
RM16704
C. subantarcticus
LMG 24374
C. subantarcticus
LMG 24377
C. ureolyticus
RIGS 9880
C. volucris
LMG 24379
130pseApseudaminic acid biosynthesis protein1554Cj1316c
CJ..6_1333
A911_06400
PJ16_07330
PJ17_06970
N135_01405
N564_01334
N565_01373
N755_01369
PJ18_06775
PJ19_07330
JJ..7_0398
BN.._13050
M635_02270
UC78_1265
C8J_1250
CJ.._06555
RC25_06230
CJ..m_1289
CJH_06660
CJSA_1254
IC..1_1262
CJM1_1289
MT..0_1312
ER.._01428
A0.._07085
H730_07530
CJE1511
Cj..5_1330
AX.._06480
Cj..6_1333
Cj..7_1333
CJS3_1416
A0.._07765
QZ67_01451
N149_1279
AB.._08245
VC76_06625
AR.._01570
AT.._00932
YSQ_02265
YSS_07150
YSU_02280
A6.._02245
CINS_1280
UP..0_1304
CONCH_1279
Cla_1328
UP..1_1298
UP..2_1320
CD56_06785
CS..1_1510
CS..3_1606
CVOL_1311

Annotated functions

Function#Occuringscore
pseudaminic acid biosynthesis protein31.12
flagellin modification protein, PseA10.44
hypothetical protein10.00

Subgroups

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
IC..1_1262
Cj..6_1333
Cj..7_1333
UP..2_1320
1
VC76_06625

Predicted On/Off state

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
IC..1_1262
Cj..6_1333
Cj..7_1333
UP..2_1320
1
VC76_06625

ICDCCJ07001

ICDCCJ07001 : ICDCCJ07001_1262 [tract entry] [top]

Function: flagellin modification protein, PseA
+0 MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREKEFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGR
+100 KNLDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPLIIWGESPQMEYGGPASSKNKNILGREWLEEFGGLLGNRAS
+200 DMLGVNGITEKDLFLYTYPSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSNHVHDYLKYCKYGFGRATDNACLDI
+300 RLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSGFSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK

[show detailed alignment]

RM3196

RM3196 : CjjRM3196_1333 [tract entry] [top]

Function: pseudaminic acid biosynthesis protein
+0 MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREKEFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGR
+100 KNLDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPLIIWGESPQMEYGGPASSKNKNILGREWLEEFGGLLGNRAS
+200 DMLGVNGITEKDLFLYTYPSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSNHVHDYLKYCKYGFGRATDNACLDI
+300 RLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSGFSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK

[show detailed alignment]

RM3197

RM3197 : CjjRM3197_1333 [tract entry] [top]

Function: pseudaminic acid biosynthesis protein
+0 MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREKEFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGR
+100 KNLDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPLIIWGESPQMEYGGPASSKNKNILGREWLEEFGGLLGNRAS
+200 DMLGVNGITEKDLFLYTYPSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSNHVHDYLKYCKYGFGRATDNACLDI
+300 RLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSGFSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK

[show detailed alignment]

FB1

FB1 : VC76_06625 [tract entry] [top]

Function: hypothetical protein
+0 VPTKIGRKNLENLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPLIIWGGGSPQIEYGGPASSKNKNILGREWLEEFG
+100 GLLGNRASDMLGVNGITEKDLFLYTYPSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSNHVHDYLKYCKYGFGRA
+200 TDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSGFSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK

[show detailed alignment]

RM16712

RM16712 : UPTC16712_1320 [tract entry] [top]

Function: pseudaminic acid biosynthesis protein
+0 VIFCKRCVMPDTKPDLHFNDEGICDACYSQEEKNYKINWQEREKEFLELVKKYKKHPIYDCVIGVSGGKDSTFQVLKCLELGLKPLCVCFEPSIPTKLGK
+100 KNLKNLNNLGVDLIHIKRNPLVYKKLSREAFIRTGDNEWQNHLGIFTCVPKIAVAFEIPLIIWGESPQIEYGGPASSKEKNTLGREWLEEFGGLLGNRIS
+200 DMIGVDGIREKDLYFYTYPSDEELERVGVTGLFLGYYFKWDYKYNLKLAQENGFQTSTKPVETTYENFENLDCYSNHVHDYLKYCKYGFGRATDNACLDI
+300 RFGYISREEGVRLVNKYDGKPPKKAIKKYLEFSGFSQKEFEKIVDSYTNKKIFKRDENGKFLRDSDGSLIKKDEFILK

[show detailed alignment]