Analysis of poly-G tracts in LMG 11760


Strain name: LMG 11760
Filepath: ../polyG/campy.new\241781-744810511.gb
Species: C. lari

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00777131364A10114480CONCH_0029614No annotation dataCONCH_0029
1CP007771112042G994490CONCH_013467hypothetical proteinCONCH_0134
2CP007771144963G99170CONCH_0163636motility accessory factorCj1318
Cj1335
A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02285
M635_02370
UC78_1278
UC78_1267
UC78_1276
CJ8421_06665CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265ERS445056_01446
ERS445056_01430
ERS445056_01444
H730_07620
H730_07630
CJE1524AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1335CJS3_1430
CJS3_1427
A0W69_07845QZ67_01471N149_1281
N149_1298
N149_1296
AB430_08255
AB430_08325
AB430_08340
ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02185
YSQ_02175
YSQ_02255
YSS_07245
YSS_07160
YSS_07240
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
A6K30_02155
CINS_0156
CINS_1188
CONCH_0163Cla_0168CSUB8521_0178
CSUB8521_0235
CSUB8523_1511
CSUB8523_0172
CVOL_0220
CVOL_1306
CVOL_1208
3CP007771276292G994500CONCH_0312223hypothetical protein, putative serine acetyltransferaseCONCH_0312
4CP007771278412G10104510CONCH_0314561glycosyltransferase, family 2CONCH_0314
5CP007771432297G9940CONCH_0464228SAM-dependent methyltransferaseCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_00860
PJ19_07375
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451
6CP007771455747C7None452-8989bp upstream of CONCH_0486448malate:quinone-oxidoreductaseCj0393cCJJ81176_0416A911_01910PJ16_01910PJ17_01910N135_00437N564_00376N565_00426N755_00426PJ18_01910PJ19_02175JJD26997_1565BN867_03660M635_06275UC78_0379C8J_0368CJ8421_01970RC25_01950CJM1cam_0371CJH_01955CJSA_0366ICDCCJ07001_360CJM1_0371MTVDSCj20_0363ERS445056_00387A0W68_01900H730_02530CJE0442CjjRM1285_0369AXW77_01875CjjRM3196_0375CjjRM3197_0375CJS3_0383A0W69_02790QZ67_00395N149_0390AB430_03500G157_06675VC76_02060AR446_06150ATE51_03428YSQ_07920YSS_01740YSU_06920A6K30_06775CCC13826_0434CCON33237_1481CCV52592_1243CFT03427_0631CFF04554_0621CFF8240_0628CSG_6560CFV97608_0674CFTSP3_0629CFVI03293_0624CR44_03210CGRAC_0946CHAB381_1634CHL_1266CHH_1140CIG1485E_0721CIG2463D_0722CIG11343_0679CINS_0546UPTC4110_0483CONCH_0486UPTC3659_0508Cla_0480UPTC16701_0478UPTC16712_0486CD56_02390CPEL_0582CAQ16704_0501CSUB8521_0515CSUB8523_0501CVOL_0565
7CP007771545182G994420CONCH_0577707autotransporter domain proteinUPTC4110_0579CONCH_0577UPTC3659_0606CSUB8521_0608CSUB8523_0595CVOL_0507
8CP007771652025G10104430CONCH_0686869hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
9CP007771810496G774530CONCH_0844188DJ-1/PfpI family proteinCj0899cCJJ81176_0908A911_04345PJ16_04710PJ17_04340N135_00937N564_00868N565_00911N755_00908PJ18_04415PJ19_04975JJD26997_0914BN867_08850M635_08750UC78_0854C8J_0836CJ8421_04450RC25_04140CJM1cam_0865CJH_04485CJSA_0845ICDCCJ07001_855CJM1_0865MTVDSCj20_0896ERS445056_00872A0W68_04705H730_05375CJE0978CjjRM1285_0857AXW77_04355CjjRM3196_0909CjjRM3197_0909CJS3_0940A0W69_05375QZ67_00964N149_0874AB430_05965G157_04290VC76_04540AR446_03625ATE51_01748YSQ_04725YSS_04765YSU_04370A6K30_04285CINS_0861UPTC4110_0868CONCH_0844UPTC3659_1101Cla_0894UPTC16701_0859UPTC16712_0889CD56_04615CPEL_0994CAQ16704_0874CSUB8521_1053CSUB8523_1159CVOL_0865
10CP007771896769G9None444-5050bp upstream of CONCH_0934784autotransporter domain proteinUPTC4110_0958CONCH_0934UPTC3659_1194UPTC16712_0986CPEL_1082CAQ16704_0970CSUB8521_1148CSUB8523_1254
11CP0077711070284G881690CONCH_1111656phosphoglycerol transferaseN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CINS_1119CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
12CP0077711085718G10104430CONCH_1120869hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
13CP0077711107997C99110CONCH_114173No annotation data
14CP0077711142627G99170CONCH_1171253No annotation data
15CP0077711223452G99150CONCH_1253425hypothetical protein (DUF2172 domain), putative M28 family zinc peptidaseCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
16CP0077711237038G99190CONCH_1266255SAM-dependent methyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
17CP0077711440685G10104430CONCH_1473869hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139