Analysis of poly-G tracts in RM1285


Strain name: RM1285
Filepath: ../polyG/campy.new\770401-1043914326.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01520974771G101110CjjRM1285_0054254No annotation dataCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
1CP01520988952A101030CjjRM1285_0071409metallo-dependent hydrolase, subgroup DCj0067CJJ81176_0105A911_00320PJ16_00350PJ17_00350N135_00070N564_01795N565_01825N755_01830PJ18_00350PJ19_00350JJD26997_0077BN867_00590M635_04705UC78_0071C8J_0060CJ8421_00350RC25_00140CJM1cam_0069CJH_00355CJSA_0061ICDCCJ07001_62CJM1_0069MTVDSCj20_0065ERS445056_00069A0W68_00355CJE0064CjjRM1285_0071AXW77_00345CjjRM3196_0068CjjRM3197_0068CJS3_0067A0W69_01215QZ67_00074N149_0065AB430_01315G157_00325VC76_00335AR446_08320ATE51_00140YSQ_00350YSS_00350YSU_00335A6K30_00350CFT03427_1464CFF04554_1516CFF8240_1504CSG_16390CFV97608_1638CFTSP3_1528CFVI03293_1538CR44_07420CHAB381_1212CHL_0206CHH_1542CIG1485E_1454CIG2463D_1647CIG11343_1398CINS_0221UPTC4110_0229CONCH_0227UPTC3659_0246Cla_0229UPTC16701_0236UPTC16712_0235CD56_01155CPEL_0232CAQ16704_0233CSUB8521_0238CSUB8523_0232CUREO_0286CVOL_0223
2CP015209176778G10None32257257bp downstream of CjjRM1285_0170220superoxide dismutase (Fe)Cj0169CJJ81176_0205A911_00815PJ16_00855PJ17_00855N135_00228N564_00161N565_00158N755_00213PJ18_01135PJ19_00855JJD26997_0184BN867_01600M635_05185UC78_0171C8J_0165CJ8421_00855RC25_00675CJM1cam_0171CJH_00880CJSA_0159ICDCCJ07001_165CJM1_0171MTVDSCj20_0168ERS445056_00174A0W68_00860H730_01175CJE0164CjjRM1285_0170AXW77_00850CjjRM3196_0172CjjRM3197_0172CJS3_0167A0W69_01725QZ67_00237N149_1539AB430_02385G157_07810VC76_07880AR446_07245ATE51_03994YSQ_09035YSS_08780YSU_08030A6K30_07865CCC13826_0328CCON33237_1766CCV52592_1312CFT03427_0030CFF04554_0031CFF8240_0032CSG_330CFV97608_0031CFTSP3_0030CFVI03293_0031CR44_00155CGRAC_1767CHAB381_0365CHL_0107CHH_0079CIG1485E_0078CIG2463D_0081CINS_0052UPTC4110_0053CONCH_0049UPTC3659_0068Cla_0050UPTC16701_0060UPTC16712_0061CD56_00270CPEL_0052CAQ16704_0050CSUB8521_0062CSUB8523_0055CUREO_1478CVOL_0051
3CP015209256834G7750CjjRM1285_0255407ATP-dependent ClpXP protease, ATP-binding subunit ClpXCj0275CJJ81176_0302A911_01330PJ16_01315PJ17_01350N135_00266N564_00260N565_00256N755_00310PJ18_01325PJ19_01315JJD26997_1695BN867_02530M635_05655UC78_0262C8J_0252CJ8421_01370RC25_01405CJM1cam_0259CJH_01380CJSA_0252ICDCCJ07001_252CJM1_0259MTVDSCj20_0251ERS445056_00268A0W68_01330H730_01670CJE0324CjjRM1285_0255AXW77_01315CjjRM3196_0263CjjRM3197_0263CJS3_0265A0W69_02210QZ67_00276N149_0264AB430_02830G157_07370VC76_01395AR446_06805ATE51_03694YSQ_08595YSS_01095YSU_07575A6K30_07430CCC13826_2124CCON33237_0287CCV52592_0867CFT03427_0323CFF04554_0314CFF8240_0316CSG_3960CFV97608_0317CFTSP3_0320CFVI03293_0315CR44_01625CGRAC_0286CHAB381_1353CHL_0287CHH_1492CIG1485E_0327CIG2463D_0335CIG11343_0273CINS_1343UPTC4110_1376CONCH_1344UPTC3659_1612Cla_1398UPTC16701_1369UPTC16712_1390CD56_07100CPEL_1501CAQ16704_1406CSUB8521_1589CSUB8523_1685CUREO_0084CVOL_1386
4CP015209524772G10None26-119119bp upstream of CjjRM1285_053741No annotation data
5CP015209574546G10980CjjRM1285_0590421No annotation dataCj0617CJJ81176_0646A911_03015PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_1051M635_07445CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_04500AR446_05110ATE51_02354YSQ_06210YSS_02830YSU_05855A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
UPTC16712_0815CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
6CP015209634943C99110CjjRM1285_0649464No annotation dataCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575
7CP015209694176C10None-12121bp downstream of CjjRM1285_07080No annotation data
8CP0152091273432G99150CjjRM1285_1309435hypothetical proteinCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
9CP0152091274902G1110160CjjRM1285_1310264No annotation dataCj1298
Cj1296
CJJ81176_1315A911_06295
A911_06305
PJ16_07260
PJ16_07265
PJ17_06870N135_02210
N135_01386
N564_02215
N564_01316
N565_01353
N565_02305
N755_01348
N755_02360
PJ18_06680
PJ18_06685
PJ19_07265
PJ19_07260
JJD26997_0426
JJD26997_0425
BN867_12890M635_02175
M635_02170
UC78_1248C8J_1239CJ8421_06460RC25_06175CJM1cam_1278CJH_06565
CJH_06570
CJSA_1236
CJSA_1234
ICDCCJ07001_1244CJM1_1278MTVDSCj20_1302ERS445056_01407A0W68_06985
A0W68_06990
H730_07430CJE1488CjjRM1285_1310
CjjRM1285_1311
AXW77_06390
AXW77_06395
CjjRM3196_1312CjjRM3197_1312CJS3_1394A0W69_07670
A0W69_07675
QZ67_01432
QZ67_01431
N149_1258AB430_08165G157_02335VC76_06505AR446_01675YSQ_02380YSS_07040
YSS_07035
YSU_02405A6K30_02345CFF04554_1479CONCH_1254Cla_1301CD56_06700CPEL_1413CSUB8521_1490CSUB8523_1586CVOL_1291
CVOL_1281
10CP0152091281229G9980CjjRM1285_1318404hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06540
VC76_06590
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSQ_02340
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
11CP0152091282453G8980CjjRM1285_1320402hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02225
N564_02220
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1265
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06540
VC76_06590
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSQ_02345
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
12CP0152091286588G9980CjjRM1285_1324404hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07710
A0W69_07730
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
13CP0152091304914G9980CjjRM1285_1338414motility accessory factor (function unknown)Cj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0407
JJD26997_0368
BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_0797CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
14CP0152091380114G10None87-1111bp upstream of CjjRM1285_1409394capsular polysaccharide export proteinCj1413cCJJ81176_1412A911_06875PJ16_07800PJ17_07435N135_01502N564_01410N565_01450N755_01447PJ18_07220PJ19_07795JJD26997_1746BN867_13930M635_02740UC78_1355C8J_1327CJ8421_07110RC25_06600CJM1cam_1370CJH_07450CJSA_1344ICDCCJ07001_1344CJM1_1370MTVDSCj20_1389ERS445056_01529A0W68_03610H730_08020CJE1600CjjRM1285_1409AXW77_06955CjjRM3196_1413CjjRM3197_1413CJS3_1508A0W69_08225QZ67_01548N149_1374AB430_08710G157_01780VC76_07065AR446_01180ATE51_00740YSQ_01805YSS_07610YSU_01835A6K30_01780CINS_0313UPTC4110_0314CONCH_0327UPTC3659_0336Cla_0319UPTC16701_0321UPTC16712_0323CD56_01580CPEL_0325CAQ16704_0325CSUB8521_0351CSUB8523_0333CVOL_0313
15CP0152091387592G99190CjjRM1285_1416257MethyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
16CP0152091389779G8None20-165165bp upstream of CjjRM1285_1417521Capsular polysaccharide biosynthesisCjjRM1285_1417
17CP0152091411303G891430CjjRM1285_1436425alpha-2,3-sialyltransferaseERS445056_01564CjjRM1285_1436
18CP0152091417251G10111610CjjRM1285_1441405putative sulfotransferaseCjjRM1285_1441ATE51_00704YSU_01750UPTC16712_0321
19CP0152091418117TA66300CjjRM1285_1442576glycosyltransferaseCJJ81176_1432M635_02980CJ8421_07205ERS445056_01547CjjRM1285_1418
CjjRM1285_1442
AXW77_07215YSS_07620CINS_0258
20CP0152091419185G9None162-196196bp upstream of CjjRM1285_1443208hypothetical proteinCjjRM1285_1443
21CP0152091426630G109900CjjRM1285_1450379No annotation dataJJD26997_1799M635_02790RC25_06740ERS445056_01573A0W68_03530CjjRM1285_1450AXW77_07010A0W69_04575CINS_0299Cla_0309CSUB8521_0340CSUB8523_0323
22CP0152091431419G10None92-151151bp upstream of CjjRM1285_1456308putative SAM-dependent methyltransferaseJJD26997_1809M635_02835RC25_06690ERS445056_01581A0W68_03540CjjRM1285_1456AXW77_07060A0W69_04585
23CP0152091550772G1091630CjjRM1285_1570220No annotation dataCJJ81176_1571BN867_15520UC78_1515C8J_1484RC25_07455CJM1cam_1522CJM1_1522MTVDSCj20_1541CjjRM1285_1570CSUB8521_1733CSUB8523_1835