Analysis of poly-G tracts in RM16712


Strain name: RM16712
Filepath: ../polyG/campy.new\241861-744821558.gb
Species: C. lari

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00777816348G994760UPTC16712_00181403autotransporter domain proteinUPTC16712_0688
UPTC16712_0746
UPTC16712_0018
CD56_07755
CD56_05090
1CP00777846154G10None4773434bp downstream of UPTC16712_004172hypothetical proteinUPTC3659_0041UPTC16701_0040UPTC16712_0041CPEL_0033CSUB8521_0035CSUB8523_0035
2CP00777860985G994780UPTC16712_00621242autotransporter domain proteinUPTC16712_0062
3CP007778283086G10104790UPTC16712_0309724putative capsular polysaccharide biosynthesis proteinUPTC16712_0309
4CP007778442318C9None-1-304304bp upstream of UPTC16712_0465216S ribosomal RNA
5CP007778495016C11None-1-306306bp upstream of UPTC16712_0521216S ribosomal RNA
6CP007778660456G994760UPTC16712_06881374autotransporter domain proteinUPTC16712_0688
UPTC16712_0746
UPTC16712_0018
CD56_07755
CD56_05090
7CP007778683159G994430UPTC16712_0708870hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345M635_08855A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
8CP007778725941G994760UPTC16712_07461344autotransporter domain proteinUPTC16712_0688
UPTC16712_0746
UPTC16712_0018
CD56_07755
CD56_05090
CSUB8523_0810
9CP007778790070G101080UPTC16712_0815398hypothetical protein (DUF2920 domain)Cj0617CJJ81176_0646JJD26997_0407CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910CJE0720CjjRM1285_0590CJS3_0607A0W69_03955QZ67_00633AB430_04500YSS_02830CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1307
Cla_0797
UPTC16712_0815CPEL_0870CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
10CP007778973234G9None444-5050bp upstream of UPTC16712_0986778autotransporter domain proteinUPTC4110_0958CONCH_0934UPTC3659_1194UPTC16712_0986CPEL_1082CAQ16704_0970CSUB8521_1148CSUB8523_1254
11CP0077781137940G11113590UPTC16712_1159403type I restriction/modification system, S subunitCHL_1698UPTC16712_1159
12CP0077781160793G994430UPTC16712_1172870hypothetical proteinCJJ81176_0759A911_04670PJ16_05080PJ17_03570PJ19_05345M635_08855A0W68_05070H730_04590A0W69_05740UPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
13CP0077781294416G99150UPTC16712_1302432hypothetical protein (DUF2172 domain), putative M28 family zinc peptidaseCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
14CP0077781299486G1010290UPTC16712_1306252formyltransferase domain-containing proteinPJ17_06920JJD26997_0414C8J_1241RC25_06185CJM1cam_1280ICDCCJ07001_1253CJM1_1280MTVDSCj20_1304CJE1498CjjRM3196_1322CjjRM3197_1322CJS3_1403N149_1269G157_02280VC76_06560AR446_01620YSQ_02320YSU_02350A6K30_02295UPTC4110_1290Cla_1312UPTC16712_1306
15CP0077781303918G99630UPTC16712_1313228methyltransferaseJJD26997_0404
JJD26997_0405
ICDCCJ07001_1256CjjRM3196_1326
CjjRM3196_1327
CjjRM3197_1327
CjjRM3197_1326
CINS_1273
CINS_1274
UPTC4110_1297
UPTC4110_1298
CONCH_1273
CONCH_1272
UPTC3659_1533
UPTC3659_1534
UPTC16701_1292
UPTC16701_1291
UPTC16712_1313
UPTC16712_1314
CSUB8521_1501
CSUB8521_1500
CSUB8523_1596
CSUB8523_1597
16CP0077781309333G10None130-44bp upstream of UPTC16712_1320378pseudaminic acid biosynthesis proteinCj1316cCJJ81176_1333A911_06400PJ16_07330PJ17_06970N135_01405N564_01334N565_01373N755_01369PJ18_06775PJ19_07330JJD26997_0398BN867_13050M635_02270UC78_1265C8J_1250CJ8421_06555RC25_06230CJM1cam_1289CJH_06660CJSA_1254ICDCCJ07001_1262CJM1_1289MTVDSCj20_1312ERS445056_01428A0W68_07085H730_07530CJE1511CjjRM1285_1330AXW77_06480CjjRM3196_1333CjjRM3197_1333CJS3_1416A0W69_07765QZ67_01451N149_1279AB430_08245VC76_06625AR446_01570ATE51_00932YSQ_02265YSS_07150YSU_02280A6K30_02245CINS_1280UPTC4110_1304CONCH_1279Cla_1328UPTC16701_1298UPTC16712_1320CD56_06785CSUB8521_1510CSUB8523_1606CVOL_1311
17CP0077781481314C10None446-154154bp upstream of UPTC16712_1501206No annotation data