Gene group 247

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Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


#GroupNameLikely Function#PV in gene#Total PV#Total GenesC. jejuni
NCTC 11168
C. jejuni
81-176
C. jejuni
PT14
C. jejuni
00-0949
C. jejuni
00-1597
C. jejuni
00-2425
C. jejuni
00-2426
C. jejuni
00-2538
C. jejuni
00-2544
C. jejuni
00-6200
C. jejuni
01-1512
C. jejuni
269.97
C. jejuni
4031
C. jejuni
32488
C. jejuni
35925B2
C. jejuni
81116; NCTC 11828
C. jejuni
CG8421
C. jejuni
CJ677CC519
C. jejuni
CJM1cam
C. jejuni
F38011
C. jejuni
IA3902
C. jejuni
ICDCCJ07001
C. jejuni
M1
C. jejuni
MTVDSCj20
C. jejuni
NCTC11351
C. jejuni
OD267
C. jejuni
R14
C. jejuni
RM1221
C. jejuni
RM1285
C. jejuni
RM3194
C. jejuni
RM3196
C. jejuni
RM3197
C. jejuni
S3
C. jejuni
WP2202
C. jejuni
YH001
C. coli
15-537360
C. coli
BFR-CA-9557
C. coli
CVM N29710
C. coli
FB1
C. coli
HC2-48
C. coli
OR12
C. coli
RM1875
C. coli
RM4661
C. coli
RM5611
C. coli
YH501
C. concisus
13826
C. concisus
ATCC 33237
C. curvus
525.92
C. fetus
03-427
C. fetus
04/554
C. fetus
82-40
C. fetus
84-112
C. fetus
97/608
C. fetus
SP3
C. fetus
cfvi03/293
C. fetus
pet-3
C. gracilis
ATCC 33236
C. hominis
ATCC BAA-381
C. hyointestinalis
CCUG 27631
C. hyointestinalis
LMG 9260
C. iguaniorum
1485E
C. iguaniorum
2463D
C. iguaniorum
RM11343
C. insulaenigrae
NCTC 12927
C. lari
CCUG 22395
C. lari
LMG 11760
C. lari
NCTC 11845
C. lari
RM2100; ATCC BAA-1060D
C. lari
RM16701
C. lari
RM16712
C. lari
Slaughter Beach
C. peloridis
LMG 23910
C. sp.
RM16704
C. subantarcticus
LMG 24374
C. subantarcticus
LMG 24377
C. ureolyticus
RIGS 9880
C. volucris
LMG 24379
247CFT03427_1558radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)7714
CF..7_1558
CF..7_1552
CF..4_1608
CF..4_1602
CSG_17390
CSG_17310
CF..8_1733
CF..8_1727
CF..3_1622
CF..3_1616
CF..3_1630
CF..3_1624
CR44_07900
CR44_07870

Annotated functions

Function#Occuringscore
radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)32.31
radical SAM domain protein (DUF4008 domain)21.90
molybdenum cofactor biosynthesis protein MoaB10.44
Predicted Fe-S oxidoreductase10.38

Subgroups

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
CF..7_1558
CF..3_1622
CR44_07900
1
CF..4_1608
CSG_17390
CF..8_1733
CF..3_1630

Predicted On/Off state

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
CF..7_1558
CF..3_1622
CR44_07900
1
CF..4_1608
CSG_17390
CF..8_1733
CF..3_1630

03-427

03-427 : CFT03427_1558 [tract entry] [top]

Function: radical SAM domain protein (DUF4008 domain)
+0 MKIDDKDLDNKKEIIKNRFSLKNFNDYIKFPKYFEVETVNACNAHCKMCSIEHWEGYQDKNKFKRIMSDDTWSKFVQCITPYSKWIEKISLTKLGEPLLD
+100 FKIQDRIKDLKKLNIKNVSITTNASLLNEDISKKLLDSELDELNVSIDGLSKEVYEAIRIGLKHENVYKNTIKFINMRDGGGYHTSIRIRLTQQEQNLHE
+200 IADWTNFWKSKTDKNDKVYTMPLLTWGNRLFSETQSKIEFMSNKACSYLFSSMSIDYDGRVVLCCSDFNSIFDLGNINEKTINEIWTSKKYEKIREMHLN
+300 NERNKINICKGCMIWDKSYTSNNTNKK

[show detailed alignment]

04/554

04/554 : CFF04554_1608 [tract entry] [top]

Function: radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)
+0 MKIDNKDLDAKKEIIKNRFSLKNFNDYIKFPKYFEVETVNACNAHCKMCSIEHWEGYRDKNKFKRIMSDDTWSKFVQYITPYSQWIEKISLTKLGEPLLD
+100 FKIQDRIKDLKKLNIKNVSITTNASLLNENISKKLLDSGLDELNVSIDGLSKEVYEGIRIGLKHENVYKNTIQFINMRDGGGYRTSIRVRLTQQEQNLHE
+200 IDDWINFWTSKTDKNDKVYTMPLLTWGNRLFNETQSKIEFMSNKACSYLFSSMSIDYDGRVVLCCSDFNSIFDLGNINEKTINDIWTSKKYETIREMHLN
+300 NERNKINICKGCMIWDKSYTSNNTNKK

[show detailed alignment]

84-112

84-112 : CSG_17390 [tract entry] [top]

Function: Predicted Fe-S oxidoreductase
+0 MKIDNKDLDAKKEIIKNRFSLKNFNDYIKFPKYFEVETVNACNAHCKMCSIEHWEGYRDKNKFKRIMSDDTWSKFVQYITPYSQWIEKISLTKLGEPLLD
+100 FKIQDRIKDLKKLNIKNVSITTNASLLNENISKKLLDSGLDELNVSIDGLSKEVYEGIRIGLKHENVYKNTIQFINMRDGGGYRTSIRVRLTQQEQNLHE
+200 IDDWINFWTSKTDKNDKVYTMPLLTWGNRLFNETQSKIEFMSNKACSYLFSSMSIDYDGRVVLCCSDFNSIFDLGNINEKTINDIWTSKKYETIREMHLN
+300 NERNKINICKGCMIWDKSYTSNNTNKK

[show detailed alignment]

97/608

97/608 : CFV97608_1733 [tract entry] [top]

Function: radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)
+0 MKIDNKDLDAKKEIIKNRFSLKNFNDYIKFPKYFEVETVNACNAHCKMCSIEHWEGYRDKNKFKRIMSDDTWSKFVQYITPYSQWIEKISLTKLGEPLLD
+100 FKIQDRIKDLKKLNIKNVSITTNASLLNENISKKLLDSGLDELNVSIDGLSKEVYEGIRIGLKHENVYKNTIQFINMRDGGGYRTSIRVRLTQQEQNLHE
+200 IDDWINFWTSKTDKNDKVYTMPLLTWGNRLFNETQSKIEFMSNKACSYLFSSMSIDYDGRVVLCCSDFNSIFDLGNINEKTINDIWTSKKYETIREMHLN
+300 NERNKINICKGCMIWDKSYTSNNTNKK

[show detailed alignment]

SP3

SP3 : CFTSP3_1622 [tract entry] [top]

Function: radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)
+0 MKIDNKDLDNKKEIIKNRFSLKNFNDYIKFPKYFEVETVNACNAHCKMCSIEHWEGYQDKNKFKRIMSDDTWSKFVQCITPYSKWIEKISLTKLGEPLLD
+100 FKIQDRIKDLKKLNIKNVSITTNASLLNEDISKKLLDSELDELNVSIDGLSKEVYEAIRIGLKHENVYKNTIKFINMRDGGGYHTSIRIRLTQQEQNLHE
+200 IADWTNFWKSKTDKNDKVYTMPLLTWGNRLFSETQSKIEFMSNKACSYLFSSMSIDYDGRVVLCCSDFNSIFDLGNINEKTINEIWTSKKYEKIREMHLN
+300 NERNKINICKGCMIWDKSYTSNNTNKK

[show detailed alignment]

cfvi03/293

cfvi03/293 : CFVI03293_1630 [tract entry] [top]

Function: radical SAM domain protein (DUF4008 domain)
+0 MKIDNKDLDAKKEIIKNRFSLKNFNDYIKFPKYFEVETVNACNAHCKMCSIEHWEGYRDKNKFKRIMSDDTWSKFVQYITPYSQWIEKISLTKLGEPLLD
+100 FKIQDRIKDLKKLNIKNVSITTNASLLNENISKKLLDSGLDELNVSIDGLSKEVYEGIRIGLKHENVYKNTIQFINMRDGGGYRTSIRVRLTQQEQNLHE
+200 IDDWINFWTSKTDKNDKVYTMPLLTWGNRLFNETQSKIEFMSNKACSYLFSSMSIDYDGRVVLCCSDFNSIFDLGNINEKTINDIWTSKKYETIREMHLN
+300 NERNKINICKGCMIWDKSYTSNNTNKK

[show detailed alignment]

pet-3

pet-3 : CR44_07900 [tract entry] [top]

Function: molybdenum cofactor biosynthesis protein MoaB
+0 MKIDDKDLDNKKEIIKNRFSLKNFNDYIKFPKYFEVETVNACNAHCKMCSIEHWEGYQDKNKFKRIMSDDTWSKFVQCITPYSKWIEKISLTKLGEPLLD
+100 FKIQDRIKDLKKLNIKNVSITTNASLLNEDISKKLLDSELDELNVSIDGLSKEVYEAIRIGLKHENVYKNTIKFINMRDGGGYHTSIRIRLTQQEQNLHE
+200 IADWTNFWKSKTDKNDKVYTMPLLTWGNRLFSETQSKIEFMSNKACSYLFSSMSIDYDGRVVLCCSDFNSIFDLGNINEKTINEIWTSKKYEKIREMHLN
+300 NERNKINICKGCMIWDKSYTSNNTNKK

[show detailed alignment]