Analysis of poly-G tracts in ATCC 33236


Strain name: ATCC 33236
Filepath: ../polyG/campy.new\432741-909717139.gb
Species: C. gracilis

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01219633977C7None291-290290bp upstream of CGRAC_0030269zinc metallopeptidase, M48 familyCCC13826_1711CCON33237_1693CCV52592_0655CFT03427_0154CFF04554_0149CFF8240_0148CSG_1520CFV97608_0151CFTSP3_0152CR44_00780CGRAC_0030CHAB381_0032CHL_1720CHH_0152CIG1485E_0163CIG2463D_0166CIG11343_0112CUREO_0149
1CP01219652097G11None292-143143bp upstream of CGRAC_0049209hypothetical proteinCGRAC_0049
2CP01219693180GA662930CGRAC_0085333iron-sulfur cluster assembly scaffold protein IscUCj0239cCJJ81176_0264A911_01155PJ16_01140PJ17_01155N135_00166N564_00224N565_00220N755_00276PJ18_00840PJ19_01140JJD26997_0237BN867_02140M635_05485UC78_0228C8J_0217CJ8421_01185RC25_00920CJM1cam_0222CJH_01205CJSA_0216ICDCCJ07001_223CJM1_0222MTVDSCj20_0217ERS445056_00229A0W68_01160H730_01495CJE0290CjjRM1285_0221AXW77_01145CjjRM3196_0229CjjRM3197_0229CJS3_0228A0W69_02035QZ67_00174N149_0235AB430_02685G157_07510VC76_01250AR446_06950ATE51_03870YSQ_08740YSS_08470YSU_07720A6K30_07575CCC13826_1162CCON33237_0242CCV52592_1771CFT03427_1650CFF04554_1698CFF8240_1697CSG_18260CFV97608_1823CFTSP3_1715CFVI03293_1720CR44_08375CGRAC_0085CHAB381_0043CHL_1773CHH_1685CIG1485E_1592CIG2463D_1789CIG11343_1528CINS_1430UPTC4110_1459CONCH_1430UPTC3659_1696Cla_1487UPTC16701_1454UPTC16712_1489CD56_07535CPEL_1586CAQ16704_1489CSUB8521_1691CSUB8523_1792CUREO_1567CVOL_1473
3CP012196167883G872940CGRAC_0152137hypothetical proteinCGRAC_0152
4CP012196287665G772950CGRAC_0311169NADH:quinone oxidoreductase I, chain BCj1578cCJJ81176_1563A911_07590PJ16_08575PJ17_08220N135_01661N564_01565N565_01600N755_01601PJ18_07970PJ19_08565JJD26997_1929BN867_15430M635_03560UC78_1507C8J_1475CJ8421_07890RC25_07415CJM1cam_1514CJH_08215CJSA_1490ICDCCJ07001_1490CJM1_1514MTVDSCj20_1533ERS445056_01697A0W68_08140H730_09200CJE1749CjjRM1285_1562AXW77_07810CjjRM3196_1564CjjRM3197_1564CJS3_1658A0W69_00070QZ67_01701N149_0189AB430_00615G157_01000VC76_01005AR446_00395ATE51_00404YSQ_01005YSS_00975YSU_01000A6K30_01035CCC13826_1657CCON33237_0215CCV52592_1528CGRAC_0311CHAB381_0182CINS_1388UPTC4110_1422CONCH_1390UPTC3659_1657Cla_1444UPTC16701_1415UPTC16712_1435CD56_07330CPEL_1547CAQ16704_1452CSUB8521_1635CSUB8523_1731CUREO_1587CVOL_1432
5CP012196487960G882960CGRAC_0512381FAD-dependent oxidoreductaseCGRAC_0512
6CP012196592020G14142970CGRAC_0634270adenine-specific DNA methyltransferasePJ16_06195
PJ16_03400
N135_00338N565_00327N755_00179PJ19_06460
PJ19_03665
RC25_01055CJH_07145ICDCCJ07001_696H730_00905
H730_01920
H730_08360
CJE0220CjjRM1285_0687CjjRM3196_0742CjjRM3197_0742CJS3_0732A0W69_06085QZ67_00757AB430_07730ATE51_03824
ATE51_04018
YSS_03530
YSS_09095
CFF04554_1096CFF8240_0670CSG_6070
CSG_7060
CSG_13340
CFV97608_1340
CFV97608_0463
CFV97608_0726
CFVI03293_1042CGRAC_0634CINS_0850CSUB8521_0944CSUB8523_0977
7CP012196612599G12None298-3333bp upstream of CGRAC_065484hypothetical proteinCGRAC_0654
8CP0121961044272C10None299-179179bp upstream of CGRAC_10311490hypothetical proteinCGRAC_1031
9CP0121961175658CT9103000CGRAC_1153709No annotation dataCGRAC_1153
10CP0121961458117C8None301-315315bp upstream of CGRAC_1400355bifunctional (RS)-methionine sulfoxide reductase A/BCCC13826_1633CCON33237_0761CCV52592_1839CFT03427_1256CFF04554_1306CFF8240_1279CSG_14270CFV97608_1430CFTSP3_1318CFVI03293_1330CR44_06340CGRAC_1400CHAB381_1085CHL_1335CHH_1291CIG1485E_1305CIG2463D_1438CIG11343_1254CUREO_0099
11CP0121961520533TA8None302-3131bp upstream of CGRAC_146398hypothetical proteinCGRAC_1463
12CP0121961747503G9None303112112bp downstream of CGRAC_168275hypothetical proteinCGRAC_1682
13CP0121961758018C7None304284284bp downstream of CGRAC_169176hypothetical proteinCj0449cCJJ81176_0474A911_02190PJ16_02210PJ17_02205N135_00497N564_00431N565_00481N755_00480PJ18_02210PJ19_02475JJD26997_1490BN867_04190M635_06580UC78_0431C8J_0422CJ8421_02245RC25_02220CJM1cam_0431CJH_02265CJSA_0419CJM1_0431MTVDSCj20_0421ERS445056_00444A0W68_02175H730_02825CJE0499CjjRM1285_0424AXW77_02170CjjRM3196_0434CjjRM3197_0434CJS3_0441A0W69_03090QZ67_00455N149_0446AB430_03790G157_06400VC76_02350AR446_05865ATE51_03316YSQ_07620YSS_02035YSU_06630A6K30_06490CCV52592_0719CFT03427_0964CFF04554_0972CFF8240_0974CSG_10200CFV97608_1032CFTSP3_1017CFVI03293_0783CR44_04900CGRAC_1691CHL_0823CHH_0797UPTC4110_1009CONCH_0985UPTC3659_1243Cla_1031UPTC16701_1000CD56_05300CPEL_1135CAQ16704_1018CSUB8521_1196CSUB8523_1302CVOL_1005
14CP0121961811472AG7None305-3636bp upstream of CGRAC_1754232hypothetical proteinCGRAC_1754
15CP0121961879762GC653060CGRAC_1825948DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonucleaseCj0338cCJJ81176_0360A911_01635PJ16_01640PJ17_01640N135_00384N564_00322N565_00373N755_00373PJ18_01625PJ19_01640JJD26997_1620BN867_03130M635_05990UC78_0327C8J_0315CJ8421_01675RC25_01685CJM1cam_0318CJH_01685CJSA_0312ICDCCJ07001_309CJM1_0318MTVDSCj20_0310ERS445056_00334A0W68_01630H730_02240CJE0383CjjRM1285_0315AXW77_01605CjjRM3196_0320CjjRM3197_0320CJS3_0325A0W69_02520QZ67_00339N149_0336AB430_03230G157_06945VC76_01790AR446_06420ATE51_03536YSQ_08190YSS_01470YSU_07190A6K30_07045CCC13826_0350CCON33237_0431CCV52592_1705CFT03427_0236CFF04554_0229CFF8240_0229CSG_3110CFV97608_0231CFTSP3_0234CFVI03293_0229CR44_01190CGRAC_1825CHAB381_1725CHL_0324CHH_0242CIG1485E_0244CIG2463D_0249CIG11343_0192CINS_1293UPTC4110_1317CONCH_1292UPTC3659_1551Cla_1341UPTC16701_1311UPTC16712_1334CD56_06850CPEL_1443CAQ16704_1346CSUB8521_1523CSUB8523_1619CUREO_0526CVOL_1324
16CP0121961980011G993070CGRAC_1916611acyltransferaseCGRAC_1916
17CP0121961998823G14None308-3636bp upstream of CGRAC_1933227Sel1 domain proteinCCON33237_0054CFT03427_1384CFTSP3_1448CR44_07000CGRAC_1933
CGRAC_0930
CHAB381_1232CAQ16704_1395CUREO_0151
CUREO_0975
18CP0121962001474G15153090CGRAC_1935137hypothetical proteinCGRAC_1935
19CP0121962118594G10None310-5050bp upstream of CGRAC_2035255hypothetical proteinCGRAC_0345
CGRAC_2035
20CP0121962180439G992240CGRAC_2093908TonB-dependent receptorCCV52592_2212
CCV52592_0932
CGRAC_2093