Gene group 10

[Back to Gene Group Index]

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


#GroupNameLikely Function#PV in gene#Total PV#Total GenesC. jejuni
NCTC 11168
C. jejuni
81-176
C. jejuni
PT14
C. jejuni
00-0949
C. jejuni
00-1597
C. jejuni
00-2425
C. jejuni
00-2426
C. jejuni
00-2538
C. jejuni
00-2544
C. jejuni
00-6200
C. jejuni
01-1512
C. jejuni
269.97
C. jejuni
4031
C. jejuni
32488
C. jejuni
35925B2
C. jejuni
81116; NCTC 11828
C. jejuni
CG8421
C. jejuni
CJ677CC519
C. jejuni
CJM1cam
C. jejuni
F38011
C. jejuni
IA3902
C. jejuni
ICDCCJ07001
C. jejuni
M1
C. jejuni
MTVDSCj20
C. jejuni
NCTC11351
C. jejuni
OD267
C. jejuni
R14
C. jejuni
RM1221
C. jejuni
RM1285
C. jejuni
RM3194
C. jejuni
RM3196
C. jejuni
RM3197
C. jejuni
S3
C. jejuni
WP2202
C. jejuni
YH001
C. coli
15-537360
C. coli
BFR-CA-9557
C. coli
CVM N29710
C. coli
FB1
C. coli
HC2-48
C. coli
OR12
C. coli
RM1875
C. coli
RM4661
C. coli
RM5611
C. coli
YH501
C. concisus
13826
C. concisus
ATCC 33237
C. curvus
525.92
C. fetus
03-427
C. fetus
04/554
C. fetus
82-40
C. fetus
84-112
C. fetus
97/608
C. fetus
SP3
C. fetus
cfvi03/293
C. fetus
pet-3
C. gracilis
ATCC 33236
C. hominis
ATCC BAA-381
C. hyointestinalis
CCUG 27631
C. hyointestinalis
LMG 9260
C. iguaniorum
1485E
C. iguaniorum
2463D
C. iguaniorum
RM11343
C. insulaenigrae
NCTC 12927
C. lari
CCUG 22395
C. lari
LMG 11760
C. lari
NCTC 11845
C. lari
RM2100; ATCC BAA-1060D
C. lari
RM16701
C. lari
RM16712
C. lari
Slaughter Beach
C. peloridis
LMG 23910
C. sp.
RM16704
C. subantarcticus
LMG 24374
C. subantarcticus
LMG 24377
C. ureolyticus
RIGS 9880
C. volucris
LMG 24379
10kdpApseudogene (potassium-transporting ATPase A chain)101032
Cj0676
CJ..6_0699
PJ16_03350
PJ17_03275
00..25 [0]
00..26 [0]
00..38 [0]
00..44 [0]
PJ18_03340
PJ19_03615
BN.._06750
M635_07715
UC78_0651
C8J_0628
RC25_01270
CJ..m_0644
CJH_03385
CJSA_0637
IC..01_614
CJM1_0645
MT..0_0685
ER.._00655
ER.._00656
OD267 [0]
CJE0774
Cj..5_0640
AX.._03300
Cj..6_0645
Cj..7_0645
CJS3_0664
A0.._04210
QZ67_00687

Annotated functions

Function#Occuringscore
pseudogene (potassium-transporting ATPase A chain)10.50
transcriptional regulator10.29
No data, identified by script50.00
No annotation data30.00

Subgroups

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
Cj0676
00..25 [0]
00..26 [0]
00..38 [0]
00..44 [0]
OD267 [0]
CJE0774
CJS3_0664
A0.._04210
1
CJSA_0637

Predicted On/Off state

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
Cj0676
00..25 [0]
00..26 [0]
00..38 [0]
00..44 [0]
OD267 [0]
CJE0774
CJS3_0664
A0.._04210
1
CJSA_0637

NCTC 11168

NCTC 11168 : Cj0676 [tract entry] [top]

Function: pseudogene (potassium-transporting ATPase A chain)
+0 MLEILITLIIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLIYKICAIDRKNMTWQKYSLHLIAFNALVAIFSFVIFYLQDKLF

No BLAST hits


00-2425

00-2425 : 00-2425 [0] [tract entry] [top]

Function: No data, identified by script
+0 KRNTRFCSYGKRRRRGGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFGTDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISAT
+100 LLNMMLNVAFGGEGVGLMNMIIYVLLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISNPSFHGLAQILYEFSSSAA
+200 NNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAGSLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFAALTFFQCLLYQALQNIYLYGIKESQC
+300 LKNKINSLQKKF

[show detailed alignment]

00-2426

00-2426 : 00-2426 [0] [tract entry] [top]

Function: No data, identified by script
+0 KRNTRFCSYGKRRRRGGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFGTDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISAT
+100 LLNMMLNVAFGGEGVGLMNMIIYVLLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISNPSFHGLAQILYEFSSSAA
+200 NNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAGSLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFAALTFFQCLLYQALQNIYLYGIKESQC
+300 LKNKINSLQKKF

[show detailed alignment]

00-2538

00-2538 : 00-2538 [0] [tract entry] [top]

Function: No data, identified by script
+0 KRNTRFCSYGKRRRRGGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFGTDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISAT
+100 LLNMMLNVAFGGEGVGLMNMIIYVLLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISNPSFHGLAQILYEFSSSAA
+200 NNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAGSLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFAALTFFQCLLYQALQNIYLYGIKESQC
+300 LKNKINSLQKKF

[show detailed alignment]

00-2544

00-2544 : 00-2544 [0] [tract entry] [top]

Function: No data, identified by script
+0 KRNTRFCSYGKRRRRGGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFGTDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISAT
+100 LLNMMLNVAFGGEGVGLMNMIIYVLLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISNPSFHGLAQILYEFSSSAA
+200 NNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAGSLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFAALTFFQCLLYQALQNIYLYGIKESQC
+300 LKNKINSLQKKF

[show detailed alignment]

IA3902

IA3902 : CJSA_0637 [tract entry] [top]

Function: No annotation data
+0 MLEILITLIIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLIYKICAIDRKNMTWQKLFFAFNCF

No BLAST hits


OD267

OD267 : OD267 [0] [tract entry] [top]

Function: No data, identified by script
+0 KKYKVLLLWEKKKKGGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFGTDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISATL
+100 LNMMLNVAFGGEGVGLMNMIIYVLLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISNPSFHGLAQILYEFSSSAAN
+200 NGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAGSLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFAALTFFQCLLYQALQNIYLYGIKESQCL
+300 KNKINSLQKKF

[show detailed alignment]

RM1221

RM1221 : CJE0774 [tract entry] [top]

Function: No annotation data
+0 MLEILITLIIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLIYKICAIDRKNMTWQKLFFAFNCF

No BLAST hits


S3

S3 : CJS3_0664 [tract entry] [top]

Function: No annotation data
+0 MLEILITLIIAFILALIFGNYLYKIASCKKTIFDFIFNPIDNLIYKICAIDRKNMTWQKLFFAFNCF

No BLAST hits


WP2202

WP2202 : A0W69_04210 [tract entry] [top]

Function: transcriptional regulator
+0 VLTLENKFQSIATGPVAALESIKHLGTNGGGFFGTNSSMPFENPTLLTNFLQILSMMLIPSACVVAFGLMVYHRKEIQGFALMGKEEEGGGGVIFGAMGI
+100 IFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFGTDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISATLLNMMLNVAFGGEGVGLMNMIIYVLL
+200 TVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISNPSFHGLAQILYEFSSSAANNGSGLEGLKDDNLFWNLSTAFAMFC
+300 GRYLVLIAQLAIAGSLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFAALTFFQCLLYQALQNIYLYGIKESQCLKNKINSLQKKF

[show detailed alignment]