Analysis of poly-G tracts in 84-112


Strain name: 84-112
Filepath: ../polyG/campy.new\319081-577005241.gb
Species: C. fetus

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0HG004426229971G8None230-230230bp upstream of CSG_2380600UbiD family decarboxylase associated with menaquinone via futalosineCj0546CJJ81176_0571A911_02660PJ16_02710PJ17_02645N135_00595N564_00532N565_00580N755_00579PJ18_02715PJ19_02975JJD26997_1384BN867_05560M635_07075UC78_0530C8J_0507CJ8421_02670RC25_02655CJM1cam_0521CJH_02760CJSA_0513ICDCCJ07001_492CJM1_0521MTVDSCj20_0563ERS445056_00532A0W68_02665H730_03605CJE0650CjjRM1285_0517AXW77_02660CjjRM3196_0523CjjRM3197_0523CJS3_0536A0W69_03580QZ67_00556N149_0535AB430_04230G157_05935VC76_02845AR446_05375ATE51_03116YSQ_07125YSS_02530YSU_06135A6K30_06000CCC13826_1045CCON33237_0800CCV52592_0770CFT03427_0594CFF04554_0584CFF8240_0591CSG_2380CFV97608_0637CFTSP3_0595CFVI03293_0587CR44_03025CGRAC_1029CHAB381_0901CHL_1490CHH_0523CIG1485E_0648CIG2463D_0648CIG11343_0576CINS_0741UPTC4110_0786CONCH_0780UPTC3659_0883Cla_0766UPTC16701_0780UPTC16712_0784CD56_04185CPEL_0838CAQ16704_0774CSUB8521_0817CSUB8523_0904CUREO_0645CVOL_0758
1HG004426524327T10None274-5959bp upstream of CSG_5300126Putative periplasmic proteinCFT03427_0459CFF04554_0448CFF8240_0450CSG_5300CFV97608_0450CFTSP3_0459CFVI03293_0450
2HG004426536796C1092360CSG_5400995putative autotransporter proteinCFF04554_0475CFF8240_0465CSG_5400CFV97608_0520CFVI03293_0466
3HG004426602857C9102750CSG_6080130hypothetical proteinCSG_6080CFV97608_0462
4HG004426727634G9None276-486486bp upstream of CSG_7140297hypothetical proteinCFF04554_1105CSG_13260
CSG_7140
CFV97608_1332
CFV97608_0734
CFTSP3_0689
5HG004426763471G892630CSG_7650553methyl-accepting chemotaxis proteinCFT03427_1196CFF04554_1255CFF8240_1227CSG_7650CFV97608_1279CFTSP3_1258CFVI03293_1224CR44_06080
6HG004426858209G9102350CSG_8730418hypothetical proteinCFT03427_1099CFF04554_1149CFF8240_1123CSG_8730CFV97608_1174CFTSP3_1161CFVI03293_1119CR44_05590
7HG004426932951G8None234-44bp upstream of CSG_9530700Methyl-accepting chemotaxis proteinCj1506cCJJ81176_1498A911_07255PJ16_08255PJ17_07875N135_01597N564_01500N565_01536N755_01538PJ18_07650PJ19_08250JJD26997_1858BN867_14750M635_03225UC78_1438C8J_1409CJ8421_07535RC25_07085CJM1cam_1450CJH_07885CJSA_1428ICDCCJ07001_1432CJM1_1450MTVDSCj20_1471ERS445056_01629A0W68_07825H730_08820CJE1679CjjRM1285_1500AXW77_07460CjjRM3196_1506CjjRM3197_1506CJS3_1585A0W69_08660QZ67_01635G157_01355VC76_07445YSS_08035A6K30_01405CFT03427_1021CFF04554_1030CFF8240_1041CSG_9530CFV97608_1097CFTSP3_1083CFVI03293_0998CR44_05185CINS_0215
8HG0044261009903G992320CSG_10300446hypothetical proteinCFT03427_0951
CFT03427_1578
CFF04554_0962
CFF04554_1628
CFF8240_0963
CFF8240_1626
CSG_17600
CSG_10300
CFV97608_1022
CFV97608_1753
CFTSP3_1006
CFTSP3_1642
CFVI03293_1650
CFVI03293_0793
CR44_08020
CR44_04830
9HG0044261087064G992310CSG_11100522MethyltransferaseCFT03427_0876CFF04554_0883CFF8240_0879CSG_11100CFV97608_0943CFTSP3_0931CFVI03293_0872CR44_04455
10HG0044261103790G992590CSG_11240253General secretion pathway protein GCFT03427_0866CFF04554_0871CFF8240_0865CSG_11240CFV97608_0930CFTSP3_0921CFVI03293_0884CR44_04400
11HG0044261290445G9None276-495495bp upstream of CSG_13260297hypothetical proteinCFF04554_1105CSG_13260
CSG_7140
CFV97608_1332
CFV97608_0734
CFTSP3_0689
12HG0044261327592G10None277-9898bp upstream of CSG_1371073hypothetical proteinCSG_13710
13HG0044261406657AT651740CSG_14450705Ferrous iron transport protein BCj1398A911_06800PJ16_07725PJ17_07360N135_02245N564_02335N565_02415N755_01432PJ18_07145PJ19_07720BN867_13780M635_02665UC78_1340C8J_1312CJ8421_07035RC25_06525CJM1cam_1355CJH_07075CJSA_1329ICDCCJ07001_1329CJM1_1355MTVDSCj20_1374ERS445056_01514A0W68_03685CJE1585CjjRM1285_1394AXW77_06880CjjRM3196_1398CjjRM3197_1398CJS3_1493A0W69_08150N149_1359AB430_08635G157_01855VC76_06995AR446_01250YSQ_01880YSS_07540YSU_01915A6K30_01855CFT03427_1271CFF04554_1323CFF8240_1297CSG_14450CFV97608_1447CFTSP3_1334CFVI03293_1347CR44_06425CHAB381_0441CHL_1357CHH_1316CIG1485E_1322CIG2463D_1456CIG11343_1271UPTC4110_0290CONCH_0286UPTC3659_0304Cla_0283UPTC16701_0291UPTC16712_0293CD56_01430CPEL_0296CAQ16704_0295CSUB8521_0303CVOL_0281
14HG0044261565689G98150CSG_16050425hypothetical proteinCj1295A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
15HG0044261574044G872380CSG_16150179transformation system proteinCFT03427_1442CFF04554_1493CFF8240_1480
CFF8240_1481
CSG_16150CFV97608_1615CFTSP3_1506CFVI03293_1515CR44_07310
16HG0044261639834G9102390CSG_16870129hypothetical proteinCFF8240_1551CSG_16870CR44_07655
17HG0044261640010G982390CSG_16880321hypothetical proteinCFT03427_1510CFF04554_1562CFF8240_1552CSG_16880CFV97608_1684CFTSP3_1574CFVI03293_1574CR44_07655CHL_0243
18HG0044261641801G992410CSG_16910228Possible methyltransferaseCFT03427_1512CFF04554_1564CFF8240_1555CSG_16910CFV97608_1688CFTSP3_1576CFVI03293_1586CR44_07670CHL_0244
19HG0044261670906G992420CSG_17230356Radical SAMCFT03427_1545CFF04554_1595CFF8240_1586CSG_17230CFV97608_1720CFTSP3_1609CFVI03293_1617CR44_07835
20HG0044261675943G982430CSG_17290238hypothetical proteinCFT03427_1551CFF04554_1601CSG_17290CFV97608_1726CFTSP3_1615CFVI03293_1623CR44_07865
21HG0044261678134G892440CSG_17340423D-mycarose 3-C-methyltransferaseCFT03427_1554CFF04554_1604CFF8240_1599CSG_17340CFV97608_1729CFTSP3_1618CFVI03293_1626CR44_07880
22HG0044261680921G992460CSG_17370311methionyl-tRNA(fmet) n-formyltransferaseCFT03427_1556CFF04554_1606CSG_17370CFV97608_1731CFTSP3_1620CFVI03293_1628
23HG0044261682102G992470CSG_17390327Predicted Fe-S oxidoreductaseCFT03427_1558
CFT03427_1552
CFF04554_1608
CFF04554_1602
CSG_17390
CSG_17310
CFV97608_1733
CFV97608_1727
CFTSP3_1622
CFTSP3_1616
CFVI03293_1624
CFVI03293_1630
CR44_07900
CR44_07870
24HG0044261682996G992480CSG_17400444hypothetical proteinCFT03427_1559CFF04554_1609CFF8240_1606CSG_17400CFV97608_1734CFTSP3_1623CFVI03293_1631CR44_07905
25HG0044261686598G982490CSG_17430288Probable 3-demethylubiquinone-9 3-methyltransferaseCFT03427_1562CFF04554_1612CFF8240_1609CSG_17430CFV97608_1737CFTSP3_1626CFVI03293_1634CR44_07920
26HG0044261691167G992500CSG_17470484hypothetical proteinCFT03427_1565CFF04554_1615CFF8240_1613CSG_17470CFV97608_1740CFTSP3_1629CFVI03293_1637CR44_07935
27HG0044261692772G10102510CSG_17480672hypothetical proteinCFT03427_1566CFF04554_1616CFF8240_1624CSG_17480CFV97608_1741CFTSP3_1630CFVI03293_1638CR44_07940
28HG0044261700585G992520CSG_17550481hypothetical proteinCFT03427_1573CFF04554_1623CFF8240_1621CSG_17550CFV97608_1748CFTSP3_1637CFVI03293_1645CR44_07980
29HG0044261701599G992530CSG_17560465hypothetical proteinCFT03427_1574CFF04554_1624CFF8240_1622CSG_17560CFV97608_1749CFTSP3_1638CFVI03293_1646CR44_07990
30HG0044261706278G992540CSG_17590448hypothetical proteinCFT03427_1577CFF04554_1627CSG_17590CFV97608_1752CFTSP3_1641CFVI03293_1649CR44_08005
31HG0044261707073G882320CSG_17600453hypothetical proteinCFT03427_0951
CFT03427_1578
CFF04554_0962
CFF04554_1628
CFF8240_0963
CFF8240_1626
CSG_17600
CSG_10300
CFV97608_1022
CFV97608_1753
CFTSP3_1006
CFTSP3_1642
CFVI03293_1650
CFVI03293_0793
CR44_08020
CR44_04830
32HG0044261709497G99190CSG_17620253Methyltransferase, possibly involved in O-methyl phosphoramidate capsule modificationCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
33HG0044261709859G992550CSG_17630258Methyltransferase, possibly involved in O-methyl phosphoramidate capsule modificationCj1419cCJJ81176_1418A911_06905PJ16_07830N135_01508N564_01416N565_01456N755_01453PJ18_07250PJ19_07825JJD26997_1752BN867_06870M635_02770UC78_1361C8J_0640CJ8421_07140RC25_06630CJM1cam_0658CJH_07480CJSA_1350CJM1_0658MTVDSCj20_0697ERS445056_01535A0W68_03580H730_08050CjjRM1285_1415AXW77_06985A0W69_08255QZ67_01554AR446_04840YSQ_05935YSS_03105YSU_05585CFT03427_1581CFF04554_1631CFF8240_1629CSG_17630CFV97608_1756CFTSP3_1646CFVI03293_1653CR44_08035CINS_0303CONCH_1265UPTC3659_1406Cla_0313CD56_06725CSUB8521_0344CSUB8523_0327
34HG0044261812009G1092560CSG_18690459hypothetical proteinCFT03427_1684CFF04554_1736CFF8240_1739CSG_18690CFV97608_1863CFTSP3_1749CFVI03293_1760CR44_08555
35HG0044261840742G9None278-5858bp upstream of CSG_1895069hypothetical proteinCSG_18950CFV97608_1887CFVI03293_1784CHH_0214