Analysis of poly-G tracts in S3


Strain name: S3
Filepath: ../polyG/campy.new\371558-315057441.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00196036911C10None31122122bp downstream of CJS3_0029331L-asparaginaseCj0029CJJ81176_0056A911_00140PJ16_00145PJ17_00145N135_00029N564_00028N565_00028N755_001770PJ18_00140PJ19_00145JJD26997_0031BN867_00280M635_04505UC78_0028C8J_0028CJ8421_00150RC25_08535CJM1cam_0027CJH_00150CJSA_0029ICDCCJ07001_25CJM1_0027MTVDSCj20_0028ERS445056_00031A0W68_00140H730_00150CJE0029CjjRM1285_0028AXW77_00140CjjRM3196_0029CjjRM3197_0029CJS3_0029A0W69_01015QZ67_00031N149_0028AB430_01505G157_00140VC76_00145AR446_08145ATE51_00056YSQ_00150YSS_00150YSU_00155A6K30_00145CINS_0082UPTC4110_0082CONCH_0079UPTC3659_0098Cla_0080UPTC16701_0089UPTC16712_0091CD56_00415CPEL_0081CAQ16704_0080CSUB8521_0091CSUB8523_0084CVOL_0080
1CP00196047268G9900CJS3_00311140Putative type IIS restriction /modification enzyme, N-terminal proteinCj0031CJJ81176_0068A911_00150PJ16_00180PJ17_00185N135_00036N564_00030N565_00030N755_00030PJ18_00175PJ19_00180JJD26997_0043BN867_00300UC78_0040C8J_0034CJ8421_00165RC25_00010CJM1cam_0039CJH_00185CJSA_0032ICDCCJ07001_36CJM1_0039MTVDSCj20_0039ERS445056_00036A0W68_00175H730_00165CJE0031CjjRM1285_0039AXW77_00175CjjRM3196_0040CjjRM3197_0040CJS3_0031A0W69_01050QZ67_00037N149_0037AB430_01470G157_00150VC76_00185AR446_08190ATE51_00072YSQ_00185YSS_00195YSU_00200A6K30_00205CINS_0480UPTC4110_1431CONCH_1400UPTC3659_1667UPTC16701_1425UPTC16712_1445CD56_07380CPEL_1557CSUB8521_1649CSUB8523_1744CVOL_1446
2CP00196064017G101010CJS3_0045254Hemerythrin-like iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
3CP001960250726G7750CJS3_0265407ATP-dependent Clp protease ATP-binding subunit ClpXCj0275CJJ81176_0302A911_01330PJ16_01315PJ17_01350N135_00266N564_00260N565_00256N755_00310PJ18_01325PJ19_01315JJD26997_1695BN867_02530M635_05655UC78_0262C8J_0252CJ8421_01370RC25_01405CJM1cam_0259CJH_01380CJSA_0252ICDCCJ07001_252CJM1_0259MTVDSCj20_0251ERS445056_00268A0W68_01330H730_01670CJE0324CjjRM1285_0255AXW77_01315CjjRM3196_0263CjjRM3197_0263CJS3_0265A0W69_02210QZ67_00276N149_0264AB430_02830G157_07370VC76_01395AR446_06805ATE51_03694YSQ_08595YSS_01095YSU_07575A6K30_07430CCC13826_2124CCON33237_0287CCV52592_0867CFT03427_0323CFF04554_0314CFF8240_0316CSG_3960CFV97608_0317CFTSP3_0320CFVI03293_0315CR44_01625CGRAC_0286CHAB381_1353CHL_0287CHH_1492CIG1485E_0327CIG2463D_0335CIG11343_0273CINS_1343UPTC4110_1376CONCH_1344UPTC3659_1612Cla_1398UPTC16701_1369UPTC16712_1390CD56_07100CPEL_1501CAQ16704_1406CSUB8521_1589CSUB8523_1685CUREO_0084CVOL_1386
4CP001960433959T10None6-3535bp upstream of CJS3_181928No annotation dataNCTC 11168 [0]CJJ81176_1716A911_t08342PJ16_02315PJ17_02310N135_00518N564_00452N565_00503N755_00501PJ18_02315PJ19_02580JJD26997_1469M635_06685UC78_0452C8J_t0006CJ8421_t08717RC25_02325CJM1cam_0452CJH_02370CJSA_t0006ICDCCJ07001_430CJM1_0452MTVDSCj20_0443ERS445056_00466A0W68_02280H730_t10002CJE_tRNA-Thr-1CjjRM1285_0446AXW77_02275CjjRM3196_0456CjjRM3197_0456CJS3_1819A0W69_03195QZ67_01929N149_0467AB430_03895G157_t08574VC76_02455AR446_05760ATE51_03274YSQ_07515YSS_02140YSU_06525A6K30_06385CCC13826_2230CCON33237_0674CCV52592_2194CFT03427_1294CFF04554_1346CFF8240_1329CFV97608_1469CFTSP3_1357CFVI03293_1369CR44_06550CGRAC_1613CHAB381_1676CHL_1409CHH_1336CIG1485E_1341CIG2463D_1532CIG11343_1290CINS_0415UPTC4110_0433CONCH_0439UPTC3659_0456Cla_0436UPTC16701_0433UPTC16712_0439CD56_02165CPEL_0445CAQ16704_0452CSUB8521_0468CSUB8523_0454CUREO_1290CVOL_0426
5CP001960527512G10None40-106106bp upstream of CJS3_0556355hypothetical proteinPJ17_02740UC78_0549CJ8421_02765ERS445056_00552CJE0670CJS3_0556
6CP001960575618G91080CJS3_0607409hypothetical proteinCj0617CJJ81176_0646A911_03015PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_1051M635_07445CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910H730_03970CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_04500AR446_05110ATE51_02354YSQ_06210YSS_02830
YSS_07275
YSU_05855A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
7CP001960609656AG66410CJS3_0641164membrane proteinCj0651CJJ81176_0679A911_03180PJ16_03240PJ17_03155N135_00703N564_00638N565_00685N755_00683PJ18_03245PJ19_03505JJD26997_1348BN867_06570M635_07605UC78_0632C8J_0610CJ8421_03185RC25_03130CJM1cam_0626CJH_03295CJSA_0618ICDCCJ07001_597CJM1_0626MTVDSCj20_0668ERS445056_00636A0W68_03065H730_04135CJE0754CjjRM1285_0622AXW77_03185CjjRM3196_0628CjjRM3197_0628CJS3_0641A0W69_04110QZ67_00667N149_0621AB430_04655G157_05505VC76_03270AR446_04955ATE51_02290YSQ_06050YSS_02990YSU_05700A6K30_05570CVOL_0654
8CP001960628516G99100CJS3_066467No annotation data
9CP001960630342G1010330CJS3_0669356No annotation dataCj0677CJJ81176_0700A911_03290PJ17_03280N135_00724N564_00659N565_00705N755_00703PJ18_03345BN867_06760UC78_0652C8J_0629RC25_01275CJM1cam_0646CJH_03390CJSA_0638ICDCCJ07001_615CJM1_0646MTVDSCj20_0686ERS445056_00657A0W68_03175H730_04265CJE0775CjjRM1285_0641AXW77_03305CjjRM3196_0646CjjRM3197_0646CJS3_0669A0W69_04220QZ67_00688
10CP001960639433C98110CJS3_0680465No annotation dataCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575
11CP001960722805G109270CJS3_0787245Putative periplasmic proteinCj0735CJJ81176_0758A911_03590PJ16_03950PJ17_03565N135_00784N564_00720N565_00765N755_00762PJ18_03635PJ19_04215BN867_07520C8J_0703RC25_03405CJM1cam_0719CJH_03695CJSA_0699CJM1_0719ERS445056_00720A0W68_03465H730_04585CJE0835AXW77_03600CJS3_0787A0W69_04510QZ67_00749
12CP001960729139C10None121919bp downstream of CJS3_079884hypothetical proteinCJJ81176_0765CJH_03740ICDCCJ07001_714CJE0843CJS3_0798
13CP0019601102530G11101530CJS3_1184325No annotation dataUC78_1096
UC78_1095
H730_06665CJE1280CJS3_1184YSS_06155CPEL_1346CAQ16704_1251CSUB8523_1525
14CP0019601103372G89140CJS3_1186295No annotation dataCj1144cA911_05550PJ16_05965N135_02190N564_01110N565_02255N755_02315PJ19_06230UC78_1098CJSA_1086A0W68_05955H730_06670CJE1281CJS3_1186A0W69_06915CPEL_1344CAQ16704_1249CSUB8523_1524
15CP0019601210724C8None1011414bp downstream of CJS3_1300160G:T/U mismatch-specific uracil/thymine DNA-glycosylaseCj1254CJJ81176_1270A911_06095PJ16_06780PJ17_06405N135_01287N564_01218N565_01259N755_01254PJ18_06205PJ19_07045JJD26997_0471BN867_12490M635_01965UC78_1206C8J_1198CJ8421_06255RC25_05960CJM1cam_1236CJH_06270CJSA_1193ICDCCJ07001_1202CJM1_1236MTVDSCj20_1260ERS445056_01364A0W68_06500H730_07230CJE1391CjjRM1285_1267AXW77_06180CjjRM3196_1269CjjRM3197_1269CJS3_1300A0W69_07460QZ67_01332N149_1208AB430_07915G157_02575VC76_06250AR446_01950ATE51_01072YSQ_02630YSS_06775YSU_02655A6K30_02595UPTC4110_0084CONCH_0081UPTC3659_0100Cla_0082UPTC16701_0091UPTC16712_0093CD56_00425CPEL_0083CAQ16704_0082CSUB8521_0093CSUB8523_0086CVOL_0082
16CP0019601289214G109150CJS3_1392437No annotation dataCj1295CJJ81176_1312
CJJ81176_1313
A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
17CP0019601295773G9980CJS3_1400268hypothetical proteinCj1305c
Cj1306c
CJJ81176_1321A911_06345
A911_06340
PJ17_06905N135_01395
N135_02215
N564_02225
N564_02220
N565_02310
N565_02315
N755_02365
N755_02370
PJ18_06725
PJ18_06720
JJD26997_0416BN867_12950M635_02215
M635_02220
CJ8421_06495CJH_06610CJSA_1244ICDCCJ07001_1249ERS445056_01416
ERS445056_01422
A0W68_07025H730_07465CJE1495CjjRM1285_1320AXW77_06430CjjRM3196_1319CjjRM3197_1319CJS3_1400A0W69_07710QZ67_01439
QZ67_01441
N149_1265
N149_1264
AB430_08195VC76_06540AR446_01635ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02345
YSS_07090
YSS_07075
YSS_07085
YSU_02365A6K30_02310
18CP0019601299126G99290CJS3_1403239formyl transferase domain proteinCJJ81176_1325PJ17_06920JJD26997_0414C8J_1241RC25_06185CJM1cam_1280ICDCCJ07001_1253CJM1_1280MTVDSCj20_1304ERS445056_01420CJE1498CjjRM3196_1322CjjRM3197_1322CJS3_1403N149_1269G157_02280VC76_06560AR446_01620YSQ_02320YSU_02350A6K30_02295CVOL_1294
19CP0019601299934G1110680CJS3_1405309No annotation dataJJD26997_0684CJE1500CJS3_1405CSUB8523_1426
20CP0019601301818G1010160CJS3_1408262hypothetical proteinCJE1502CJS3_1408CFF04554_1479CPEL_1413
21CP0019601302916G8980CJS3_1409403No annotation dataCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07710
A0W69_07730
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
22CP0019601311987G981580CJS3_1420131formyltransferase, putativeCJE1515CJS3_1420
23CP0019601331542G9980CJS3_1436413hypothetical proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_1051
JJD26997_0368
BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
Cla_1307CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
24CP0019601351852G10None46-4242bp upstream of CJS3_145866hypothetical proteinPJ17_07195CJE1552CJS3_1458
25CP0019601406337G991590CJS3_1510639Capsular polysaccharide biosynthesis heptosyltransferase HddDCJE1602CJS3_1510
26CP0019601408234G1091600CJS3_1511510Capsular polysaccharide biosynthesis heptosyltransferase HddDCJE1603CJS3_1511