Gene group 5

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Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


#GroupNameLikely Function#PV in gene#Total PV#Total GenesC. jejuni
NCTC 11168
C. jejuni
81-176
C. jejuni
PT14
C. jejuni
00-0949
C. jejuni
00-1597
C. jejuni
00-2425
C. jejuni
00-2426
C. jejuni
00-2538
C. jejuni
00-2544
C. jejuni
00-6200
C. jejuni
01-1512
C. jejuni
269.97
C. jejuni
4031
C. jejuni
32488
C. jejuni
35925B2
C. jejuni
81116; NCTC 11828
C. jejuni
CG8421
C. jejuni
CJ677CC519
C. jejuni
CJM1cam
C. jejuni
F38011
C. jejuni
IA3902
C. jejuni
ICDCCJ07001
C. jejuni
M1
C. jejuni
MTVDSCj20
C. jejuni
NCTC11351
C. jejuni
OD267
C. jejuni
R14
C. jejuni
RM1221
C. jejuni
RM1285
C. jejuni
RM3194
C. jejuni
RM3196
C. jejuni
RM3197
C. jejuni
S3
C. jejuni
WP2202
C. jejuni
YH001
C. coli
15-537360
C. coli
BFR-CA-9557
C. coli
CVM N29710
C. coli
FB1
C. coli
HC2-48
C. coli
OR12
C. coli
RM1875
C. coli
RM4661
C. coli
RM5611
C. coli
YH501
C. concisus
13826
C. concisus
ATCC 33237
C. curvus
525.92
C. fetus
03-427
C. fetus
04/554
C. fetus
82-40
C. fetus
84-112
C. fetus
97/608
C. fetus
SP3
C. fetus
cfvi03/293
C. fetus
pet-3
C. gracilis
ATCC 33236
C. hominis
ATCC BAA-381
C. hyointestinalis
CCUG 27631
C. hyointestinalis
LMG 9260
C. iguaniorum
1485E
C. iguaniorum
2463D
C. iguaniorum
RM11343
C. insulaenigrae
NCTC 12927
C. lari
CCUG 22395
C. lari
LMG 11760
C. lari
NCTC 11845
C. lari
RM2100; ATCC BAA-1060D
C. lari
RM16701
C. lari
RM16712
C. lari
Slaughter Beach
C. peloridis
LMG 23910
C. sp.
RM16704
C. subantarcticus
LMG 24374
C. subantarcticus
LMG 24377
C. ureolyticus
RIGS 9880
C. volucris
LMG 24379
5clpXATP-dependent Clp protease ATP-binding subunit ClpX131377
Cj0275
CJ..6_0302
A911_01330
PJ16_01315
PJ17_01350
N135_00266
N564_00260
N565_00256
N755_00310
PJ18_01325
PJ19_01315
JJ..7_1695
BN.._02530
M635_05655
UC78_0262
C8J_0252
CJ.._01370
RC25_01405
CJ..m_0259
CJH_01380
CJSA_0252
IC..01_252
CJM1_0259
MT..0_0251
ER.._00268
A0.._01330
H730_01670
CJE0324
Cj..5_0255
AX.._01315
Cj..6_0263
Cj..7_0263
CJS3_0265
A0.._02210
QZ67_00276
N149_0264
AB.._02830
G157_07370
VC76_01395
AR.._06805
AT.._03694
YSQ_08595
YSS_01095
YSU_07575
A6.._07430
CC..6_2124
CC..7_0287
CC..2_0867
CF..7_0323
CF..4_0314
CF..0_0316
CSG_3960
CF..8_0317
CF..3_0320
CF..3_0315
CR44_01625
CGRAC_0286
CH..1_1353
CHL_0287
CHH_1492
CI..E_0327
CI..D_0335
CI..3_0273
CINS_1343
UP..0_1376
CONCH_1344
UP..9_1612
Cla_1398
UP..1_1369
UP..2_1390
CD56_07100
CPEL_1501
CA..4_1406
CS..1_1589
CS..3_1685
CUREO_0084
CVOL_1386

Annotated functions

Function#Occuringscore
ATP-dependent Clp protease ATP-binding subunit ClpX35.09
ATP-dependent protease ATP-binding subunit ClpX24.70
ATP-dependent Clp protease ATP-binding subunit14.50
ATP-dependent Clp protease, ATP-binding subunit ClpX14.27
Clp protease ClpX43.88
ATP-dependent ClpXP protease, ATP-binding subunit ClpX13.55
ATP-dependent protease12.86

Subgroups

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
Cj0275
PJ16_01315
PJ18_01325
PJ19_01315
CJSA_0252
AX.._01315
QZ67_00276
1
PJ17_01350
2
CJ.._01370
3
CJH_01380
CJE0324
CJS3_0265
4
Cj..5_0255

Predicted On/Off state

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
Cj0275
PJ16_01315
PJ18_01325
PJ19_01315
CJSA_0252
AX.._01315
QZ67_00276
1
PJ17_01350
2
CJ.._01370
3
CJH_01380
CJE0324
CJS3_0265
4
Cj..5_0255

Neighbour joining tree

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UPGMA tree

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NCTC 11168

NCTC 11168 : Cj0275 [tract entry] [top]

Function: ATP-dependent Clp protease ATP-binding subunit
+0 VEFLSIGVKIMPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYN
+100 HYKRLFKAELQDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMS
+200 ENRSITRDVSGEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFG
+300 LIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITK
+400 EVVKDNAKALLIKRKIS

[show detailed alignment]

00-0949

00-0949 : PJ16_01315 [tract entry] [top]

Function: Clp protease ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

00-1597

00-1597 : PJ17_01350 [tract entry] [top]

Function: Clp protease ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSYNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

00-6200

00-6200 : PJ18_01325 [tract entry] [top]

Function: Clp protease ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

01-1512

01-1512 : PJ19_01315 [tract entry] [top]

Function: Clp protease ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

CG8421

CG8421 : CJ8421_01370 [tract entry] [top]

Function: ATP-dependent protease ATP-binding subunit ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

F38011

F38011 : CJH_01380 [tract entry] [top]

Function: ATP-dependent protease
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSYNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

IA3902

IA3902 : CJSA_0252 [tract entry] [top]

Function: ATP-dependent protease ATP-binding subunit ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

RM1221

RM1221 : CJE0324 [tract entry] [top]

Function: ATP-dependent Clp protease, ATP-binding subunit ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSYNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

RM1285

RM1285 : CjjRM1285_0255 [tract entry] [top]

Function: ATP-dependent ClpXP protease, ATP-binding subunit ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDGTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

RM3194

RM3194 : AXW77_01315 [tract entry] [top]

Function: ATP-dependent Clp protease ATP-binding subunit ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

S3

S3 : CJS3_0265 [tract entry] [top]

Function: ATP-dependent Clp protease ATP-binding subunit ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSYNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]

YH001

YH001 : QZ67_00276 [tract entry] [top]

Function: ATP-dependent Clp protease ATP-binding subunit ClpX
+0 MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEEKEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAEL
+100 QDDDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVS
+200 GEGVQQALLKIIEGSLVNIPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPELIGRLH
+300 VIASLNELNEEDMVRILTEPKNAIIKQYQKLFAIDGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEVVKDNAKAL
+400 LIKRKIS

[show detailed alignment]