Core phasome for species with 2+ genomes

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)

Core phasome for C. jejuni (n=35)

Core phasome count (groups in >= 60%) of strains: 10

In % of strain	Gene group	Name	Function
100.0 (2)	8	maf7	carbonic anyhydrase
100.0 (2)	15	Cj1295	hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
94.3 (1)	1	Cj0045c	Hemerythrin-like iron-binding protein
88.6 (1)	11	cipA	Invasion protein CipA
82.9 (1)	19	ubiE_3	SAM-dependent methyltransferase
71.4 (1)	12	hxuB_1	Heme/hemopexin transporter protein HuxB precursor
68.6 (1)	20	Cj1421c	putative sugar transferase
65.7 (2)	17	maf1	motility accessory factor
65.7 (2)	31	ansA	L-asparaginase
60.0 (1)	4	Cj0170	SAM-dependent methyltransferase
57.1 (2)	6	A911_t08342	No annotation data
57.1 (2)	16	Cj1296	aminoglycoside N3'-acetyltransferase
51.4 (1)	3	Cj0067	chlorohydrolase

Core phasome count (groups in >= 60%) of strains: 12

In % of strain	Gene group	Name	Function
100.0 (2)	1	Cj0045c	Hemerythrin-like iron-binding protein
100.0 (2)	8	maf7	carbonic anyhydrase
90.0 (6)	15	Cj1295	hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
	167	murD	UDP-N-acetylmuramoylalanine--D-glutamate ligase
	168	N149_0842	Hypothetical protein
	169	N149_0993	Phosphoglycerol transferase
	170	hxuA	filamentous hemagglutinin
	98	vacA	autotransporter
70.0 (4)	4	Cj0170	SAM-dependent methyltransferase
	17	maf1	motility accessory factor
	29	lgrA	formyl transferase domain protein
	45	PJ17_06935	3-oxoacyl-ACP synthase

Core phasome count (groups in >= 60%) of strains: 0

No core phasome identified

Core phasome count (groups in >= 60%) of strains: 27

In % of strain	Gene group	Name	Function
100.0 (14)	256	CFT03427_1684	hypothetical protein
	15	Cj1295	hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
	19	ubiE_3	SAM-dependent methyltransferase
	231	CFT03427_0876	SAM-dependent methyltransferase
	232	CFT03427_0951	hypothetical protein
	234	CFT03427_1021	MCP-domain signal transduction protein
	235	CFT03427_1099	putative membrane protein
	236	CFT03427_1115	autotransporter domain protein
	239	CFT03427_1510	ATP-grasp domain protein
	241	CFT03427_1512	SAM-dependent methyltransferase
	249	CFT03427_1562	probable 3-demethylubiquinone-9 3-methyltransferase
	252	CFT03427_1573	hypothetical protein
	253	CFT03427_1574	hypothetical membrane protein
	255	CFT03427_1581	SAM-dependent methyltransferase
87.5 (10)	230	menA	1,4-dihydroxy-2-naphthoate octaprenyltransferase
	238	CFT03427_1442	transformation system protein
	242	CFT03427_1545	radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family
	243	CFT03427_1551	short-chain dehydrogenase/reductase family protein
	244	CFT03427_1554	methyltransferase
	247	CFT03427_1558	radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family (SPASM domain)
	248	CFT03427_1559	hypothetical protein
	250	CFT03427_1565	hypothetical protein
	251	CFT03427_1566	hypothetical protein
	254	CFT03427_1577	hypothetical membrane protein
75.0 (1)	246	CFT03427_1556	formyltransferase domain-containing protein
62.5 (2)	259	CFF04554_0871	putative type II secretion system protein
62.5 (2)	263	CFF04554_1255	4HB_MCP sensor-containing MCP-domain signal transduction protein

Core phasome count (groups in >= 60%) of strains: 13

In % of strain	Gene group	Name	Function
100.0 (13)	15	Cj1295	hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
	321	CHL_0019	phosphoglycerol transferase
	332	CHL_0231	ATP-grasp domain-containing protein
	333	CHL_0238	WbqC family protein
	334	CHL_0240	aminotransferase, DegT/DnrJ/EryC1/StrS family
	337	CHL_0424	TonB-dependent receptor
	340	cmoA	carboxy-S-adenosyl-L-methionine synthase
	341	CHL_0706	diguanylate cyclase
	342	CHL_0780	autotransporter domain protein
	348	CHL_0862	membrane bound O-acyl transferase, MBOAT family
	354	CHL_1325	receiver domain protein
	357	fla1	flagellin
	233	CFT03427_0957	type III restriction/modification system, mod subunit

Core phasome count (groups in >= 60%) of strains: 20

In % of strain	Gene group	Name	Function
100.0 (7)	404	CIG1485E_0289	TonB-dependent receptor
	410	CIG1485E_1167	hypothetical membrane protein
	332	CHL_0231	ATP-grasp domain-containing protein
	334	CHL_0240	aminotransferase, DegT/DnrJ/EryC1/StrS family
	15	Cj1295	hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
	348	CHL_0862	membrane bound O-acyl transferase, MBOAT family
	236	CFT03427_1115	autotransporter domain protein
66.7 (13)	402	CIG1485E_0074	hypothetical type II secretion system protein
	405	CIG1485E_0543	hypothetical protein
	406	CIG1485E_0617	autotransporter domain protein
	407	CIG1485E_0654	autotransporter domain protein
	409	CIG1485E_1074	hypothetical protein
	412	CIG1485E_1451	hypothetical protein
	29	lgrA	formyl transferase domain protein
	321	CHL_0019	phosphoglycerol transferase
	342	CHL_0780	autotransporter domain protein
	215	CCON33237_1757	type II restriction endonuclease
	362	CHH_0019	putative membrane protein, EpsG family
	363	CHH_0020	glycosyltransferase, family 1
	381	CHH_0814	outer membrane beta-barrel domain protein

Core phasome count (groups in >= 60%) of strains: 2

In % of strain	Gene group	Name	Function
100.0 (1)	443	UPTC4110_0710	No annotation data
71.4 (1)	446	UPTC4110_1471	MCP-domain signal transduction protein
57.1 (2)	19	ubiE_3	SAM-dependent methyltransferase
57.1 (2)	444	UPTC4110_0958	autotransporter domain protein

Core phasome count (groups in >= 60%) of strains: 22

In % of strain	Gene group	Name	Function
100.0 (22)	513	CSUB8521_0371	No annotation data
	4	Cj0170	SAM-dependent methyltransferase
	517	CSUB8521_1458	type III restriction/modification enzyme, mod subunit
	519	CSUB8521_1494	hypothetical protein, possible glyoxalase/bleomycin resistance protein
	8	maf7	carbonic anyhydrase
	172	N149_1457	autotransporter domain protein
	11	cipA	Invasion protein CipA
	15	Cj1295	hypothetical protein (DUF2172 domain), putative M28 family zinc peptidase
	16	Cj1296	aminoglycoside N3'-acetyltransferase
	17	maf1	motility accessory factor
	19	ubiE_3	SAM-dependent methyltransferase
	20	Cj1421c	putative sugar transferase
	36	A911_07000	sugar transferase
	169	N149_0993	Phosphoglycerol transferase
	54	PJ18_06805	N-acetyl sugar amidotransferase
	442	UPTC4110_0579	autotransporter domain protein
	443	UPTC4110_0710	No annotation data
	444	UPTC4110_0958	autotransporter domain protein
	63	JJD26997_0405	methyltransferase
	467	Cla_0310	putative capsular polysaccharide biosynthesis protein
	476	UPTC16712_0018	autotransporter domain protein
	110	pseH	UDP-4-amino-4,6-dideoxy-beta-L-AltNAc o-acetyltransferase