Gene group 442

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Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


#GroupNameLikely Function#PV in gene#Total PV#Total GenesC. jejuni
NCTC 11168
C. jejuni
81-176
C. jejuni
PT14
C. jejuni
00-0949
C. jejuni
00-1597
C. jejuni
00-2425
C. jejuni
00-2426
C. jejuni
00-2538
C. jejuni
00-2544
C. jejuni
00-6200
C. jejuni
01-1512
C. jejuni
269.97
C. jejuni
4031
C. jejuni
32488
C. jejuni
35925B2
C. jejuni
81116; NCTC 11828
C. jejuni
CG8421
C. jejuni
CJ677CC519
C. jejuni
CJM1cam
C. jejuni
F38011
C. jejuni
IA3902
C. jejuni
ICDCCJ07001
C. jejuni
M1
C. jejuni
MTVDSCj20
C. jejuni
NCTC11351
C. jejuni
OD267
C. jejuni
R14
C. jejuni
RM1221
C. jejuni
RM1285
C. jejuni
RM3194
C. jejuni
RM3196
C. jejuni
RM3197
C. jejuni
S3
C. jejuni
WP2202
C. jejuni
YH001
C. coli
15-537360
C. coli
BFR-CA-9557
C. coli
CVM N29710
C. coli
FB1
C. coli
HC2-48
C. coli
OR12
C. coli
RM1875
C. coli
RM4661
C. coli
RM5611
C. coli
YH501
C. concisus
13826
C. concisus
ATCC 33237
C. curvus
525.92
C. fetus
03-427
C. fetus
04/554
C. fetus
82-40
C. fetus
84-112
C. fetus
97/608
C. fetus
SP3
C. fetus
cfvi03/293
C. fetus
pet-3
C. gracilis
ATCC 33236
C. hominis
ATCC BAA-381
C. hyointestinalis
CCUG 27631
C. hyointestinalis
LMG 9260
C. iguaniorum
1485E
C. iguaniorum
2463D
C. iguaniorum
RM11343
C. insulaenigrae
NCTC 12927
C. lari
CCUG 22395
C. lari
LMG 11760
C. lari
NCTC 11845
C. lari
RM2100; ATCC BAA-1060D
C. lari
RM16701
C. lari
RM16712
C. lari
Slaughter Beach
C. peloridis
LMG 23910
C. sp.
RM16704
C. subantarcticus
LMG 24374
C. subantarcticus
LMG 24377
C. ureolyticus
RIGS 9880
C. volucris
LMG 24379
442UPTC4110_0579autotransporter domain protein677
UP..0_0579
CONCH_0577
UP..9_0606
UP..9_0606
CS..1_0608
CS..3_0595
CVOL_0507

Annotated functions

Function#Occuringscore
autotransporter domain protein51.43
No annotation data20.00

Subgroups

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
UP..0_0579
1
CONCH_0577
UP..9_0606
UP..9_0606
CS..1_0608
CS..3_0595
CVOL_0507

Predicted On/Off state

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
UP..0_0579
1
CONCH_0577
UP..9_0606
UP..9_0606
CS..1_0608
CS..3_0595
CVOL_0507

CCUG 22395

CCUG 22395 : UPTC4110_0579 [tract entry] [top]

Function: autotransporter domain protein
+0 MKKLNRKIFLSACVATFVASSAMAIEPSNPIPGAIEDSQLTHLGGGEYQFVISKPQEQTFYISNHLGDNDYGQGAVLETPIKHLTINAANNTIVVGGKDV
+100 PFGSIGGIKPHYSFAIKAKEVNFIGKKNPDNVIGFKPYPVGPNTGADMNNPDNIDDGFGAIFNPDTGINSGALTDRNPWGPTWIQDSRENVSLNVFHDGL
+200 IDGNVNMDHANFKIIAGDFNGINYNGALTINGNLFAHDSLFTLHGPHQFTVNGNAVIRNSVFELANFSNPVTEKGVYLLSATNFNKEFAEVNTVRNVLLI
+300 PEGKILGLKGHALAEYEGEVVKVIIDQDKKYFNYKLNVIGNDAYAQGGLTSGIKNINISDFLKEMRIEVLTQLHDYYAQKAYEQNQQHPGIDPKVDYDKI
+400 LADIKKEMNNITNNQKVITYGHQIDSVLASLKNSDRHLAANSALVNAIKGDVRQAQAIVDSARESANNSNRQGAIQVINLANEMAIATRMAQSRGTGENS
+500 VWANAFGGANIIGSDSEGVYGTTIGIDRQFNDAIFFGAYLTYADSQLNHNSLNQDSNNLQLGLYSRIANGQHEFDIKSYAQFSFADQERFVNGSVQKSDF
+600 TQTYLGASGSYGYVFDFSDNFSIKPLIGLNLYYSHTPDYTESGIWAQKVYSMDSFAASAELGAEFRKFFSGGSYFYVTPKIEQFFAMSGDNFKARFTGSD
+700 FSYNVAGAEKDKTFGKILIGSNISVTDRFSIDLSVGAKQILGNKDDNTDETYVTGNIGVKYSF

[show detailed alignment]

LMG 11760

LMG 11760 : CONCH_0577 [tract entry] [top]

Function: autotransporter domain protein
+0 MKNSRKIFLSACVATMVASSAHAIMGGGSFSDTNLKDENKNGNYSFIVDKDTGSIYNISSVIGSSFDGKTNKFINHLNIDAAKSIFTIDGSTQDATIGHY
+100 YIKSEDKDKFYSFNIKAQELIFSGNKATLNVGNTGIIEGDLSLKDNAVLAISNGTLGGQSANGSLLVKGNFAAENANFDFYGNHSFHITGKANIINSTFK
+200 ASNAPVSENGIFLLSADGGFNKNITTSNTAGIYKEFYIDKNENIFISILTGKTPGYIGADGLTPTNTIEVKIDGLEYKLATIGNSLYLQADTSAWKNYKP
+300 NEISQNLIIAKQKVLTQLSNHLRAQIGLPVPRNKNQQELNAEIEKIIEKIDAEIDKLNKSTTVFNQQVDAVLASLLTSNRQQAAGSALTDAMVGNAQQAK
+400 NVVNSARESANNSNRQGAIQVINLANEMAISTRMMQDRNQGENSVWSNAFGGANMIGSESDSVYGVTLGIDRQFSDSVLFGAYLTYADSKLNYNSISQDA
+500 DNLQFGAYSRITNGQHEFDIKTYAQFSYTDQERFLNGTSNKSDYTQTFLGASGAYGYVFNMGDKFDIKPLIGLNVYYGKTPDYTENGVWAQKVYSMDSFA
+600 ASAEIGAEFRKGFDSGSYFYITPKIEQFFATSGNDFKGHFTGSNMNYHVAGAEKDKTFGKILIGSNISLTDRFSVDLSIGAKQILGNKDDNTDETYLTGN
+700 IGVKYSF

[show detailed alignment]

NCTC 11845

NCTC 11845 : UPTC3659_0606 [tract entry] [top]

Function: autotransporter domain protein
+0 MRNSRKIFLSTCVATMVASSAHAVIGGGISFTDSNLKDENKNGNYSFIVDKDTGSIYNISSVIGSSFDGKTNKFINHLNIDAAKSTFNIGANGQDAEIGH
+100 YFDGEKDKFYSFNIKAKEIIFDGSNNALGQETSLNVGNTGVIEGDLALLNGADLFISNGTLGSQSANGSLLVKGNFSATNANLDFYGNHSFHITGKANIT
+200 NSTFSATNAPVSENGIFLLSADGGFNKNITTSNTAGVYTAISTADALGLSAEEAKKYNESFDSIKVNIKDVDHEIKVVGNSLYISANVNTKAWNENIKTN
+300 GLAKSLKEAQKLALQSMIDEYTRLMNEAPGVQPKADTKQDFTKADYQQIIRDLTNKMNTIDVNDKSPVFNSQIDAILASLLTSNRQQAAGSALTDAMVGN
+400 AQQAKNVANSARESANNSNRQGAIQVINLANEMAISTRMMQDRNQGENSVWSNAFGGANMIGSESDSVYGITLGIDRQFSDSVLFGAYLTYADSKLNYNS
+500 ISQDADNLQFGIYSRITNGQHEFDIKTYAQFSYADQERFLNGTSNKSDFTQTYLGASGAYGYVFDMGNDFAIKPSIGLNLYYSHTPDYTETGVWAQHVQS
+600 MDSFATSAEIGAEFRKGFNGGSYFYITPKIEQFFAMSGDNFTAKFIDGMNYNVAGAEKDKTFGKILIGSNISVTDRFSVDLSIGAKQILGNKDDNTDETY
+700 LTGNIGVKYSF

[show detailed alignment]

NCTC 11845 : UPTC3659_0606 [tract entry] [top]

Function: autotransporter domain protein
+0 MRNSRKIFLSTCVATMVASSAHAVIGGGISFTDSNLKDENKNGNYSFIVDKDTGSIYNISSVIGSSFDGKTNKFINHLNIDAAKSTFNIGANGQDAEIGH
+100 YFDGEKDKFYSFNIKAKEIIFDGSNNALGQETSLNVGNTGVIEGDLALLNGADLFISNGTLGSQSANGSLLVKGNFSATNANLDFYGNHSFHITGKANIT
+200 NSTFSATNAPVSENGIFLLSADGGFNKNITTSNTAGVYTAISTADALGLSAEEAKKYNESFDSIKVNIKDVDHEIKVVGNSLYISANVNTKAWNENIKTN
+300 GLAKSLKEAQKLALQSMIDEYTRLMNEAPGVQPKADTKQDFTKADYQQIIRDLTNKMNTIDVNDKSPVFNSQIDAILASLLTSNRQQAAGSALTDAMVGN
+400 AQQAKNVANSARESANNSNRQGAIQVINLANEMAISTRMMQDRNQGENSVWSNAFGGANMIGSESDSVYGITLGIDRQFSDSVLFGAYLTYADSKLNYNS
+500 ISQDADNLQFGIYSRITNGQHEFDIKTYAQFSYADQERFLNGTSNKSDFTQTYLGASGAYGYVFDMGNDFAIKPSIGLNLYYSHTPDYTETGVWAQHVQS
+600 MDSFATSAEIGAEFRKGFNGGSYFYITPKIEQFFAMSGDNFTAKFIDGMNYNVAGAEKDKTFGKILIGSNISVTDRFSVDLSIGAKQILGNKDDNTDETY
+700 LTGNIGVKYSF

[show detailed alignment]

LMG 24374

LMG 24374 : CSUB8521_0608 [tract entry] [top]

Function: No annotation data
+0 MKNSRKFFLSACVATMVASSAHAVTKKKGGGGSFSDTNLKDINKNGNYSFVVEKDTGSIYNISSVIGESFDGENNKHIKHLNIDAAKSTLKVGANDQDAK
+100 IGHYHDGKKDKFYSFDIKAKEIIFDGINSALEVGNTGVIEGNLHIINGANLSVSNGTLGSQSAYGSLLVKGDFAAEDAKFDFYGNHNFHVTGKANIINST
+200 FKTSNAPVSENGIFLLSANGGFNKNITTSNTAGVYKEFYLDKDENIFISILTGKTPGYIAAEGLVPSEGTIEIEIEGLNYKLATIGNSLYLQADTSAWKD
+300 YKPSEISKNLIIAKKEVLTQLNNYLRTEAGLPIPLNQNQQEDPNAELKKIIKK

No BLAST hits


LMG 24377

LMG 24377 : CSUB8523_0595 [tract entry] [top]

Function: No annotation data
+0 MKNSRKFFLSACVATMVASSAHAVTKKKGGGGSFSDTNLKDINKNGNYSFVVEKDTGSIYNISSVIGESFDGENNKHIKHLNIDAAKSTLKVGANDQDAK
+100 IGHYHDGKKDKFYSFDIKAKEIIFDGINSALEVGNTGVIEGNLHIINGANLSVSNGTLGSQSAYGSLLVKGDFAAEDAKFDFYGNHNFHVTGKANIINST
+200 FKTSNAPVSENGIFLLSANGGFNKNITTSNTAGVYKEFYLDKDENIFISILTGKTPGYIAAEGLVPSEGTIEIEIEGLNYKLATIGNSLYLQADTSAWKD
+300 YKPSEISKNLIIAKKEVLTQLNNYLRTEARLPIPLNQNQQEDPNAELKKIIKK

No BLAST hits


LMG 24379

LMG 24379 : CVOL_0507 [tract entry] [top]

Function: autotransporter domain protein
+0 MKNLNRKIFLSACVATMVASSAHAVTGGGNPFSDTNLKDENKNGNYSFIDKNTGSTYNITSIIGSTFDGKTNKYINHLNIDAAKSTFNISVKDKDAEIGH
+100 YFDGEKDKFYSFNIKAKEIIFNGASDGMGKETSLNVGNTGVIEGNLALLNSADLFISNGTLGSQSANGSLLVKGDFLATDANLDFYGNHNFHVTGTAFIR
+200 NSNFSATNAPISENGIFLLSADKGFNKDIELTNTAGVYTAISTAQALGLSAEEAKKYEENIDSIKVDIKGVDHKIKVVGNSLYISAQVDTKSWQNSIKTD
+300 GLAKSLREAQKLALQSMIEEYTKLMNEAPGVEPKAANKQEFTKADYKQIIKDLTGKMNAINIDSKSPVFNSQIDAVLGSLLTSNRQQAAGSALTDAMIGK
+400 AQQAQNVINSARESANNSNRQGAIQVINLANEMAISTRMIQSRNQGENSIWSNAFGGANMIGSENDSIYGITLGIDRQFSDSILFGTYLTYADSKLSHNS
+500 INQDADNLQFGAYSRITNGQHEFDIKTYAQFSYTDQERFLNGTNNKSDYTQTFLGASGAYGYVLDMGDKFAIKPLIGLNLYYGKTPDYTENGVWAQKVYS
+600 MDSFAASAEIGAEFRKGFDGGSYFYITPKIEQFFATSGNDFKGRFAGSDMNYHVSGAEKDKTFGKLLIGSNIGITENLSVDLSLGAKQILGNKDDNTDET
+700 YFTGNIGFKYSF

[show detailed alignment]