Strain name: Slaughter Beach
Filepath: ../polyG/campy.new\345011-827023298.gb
Species: C. lari
Created: 2018-09-09 12:25:37 (W. Europe Summer Time)
TractNo | Contig | Location | Tract | On length | Gene Group | Offset from gene | Gene | Length | Function | NCTC 11168 | 81-176 | PT14 | 00-0949 | 00-1597 | 00-2425 | 00-2426 | 00-2538 | 00-2544 | 00-6200 | 01-1512 | 269.97 | 4031 | 32488 | 35925B2 | 81116; NCTC 11828 | CG8421 | CJ677CC519 | CJM1cam | F38011 | IA3902 | ICDCCJ07001 | M1 | MTVDSCj20 | NCTC11351 | OD267 | R14 | RM1221 | RM1285 | RM3194 | RM3196 | RM3197 | S3 | WP2202 | YH001 | 15-537360 | BFR-CA-9557 | CVM N29710 | FB1 | HC2-48 | OR12 | RM1875 | RM4661 | RM5611 | YH501 | 13826 | ATCC 33237 | 525.92 | 03-427 | 04/554 | 82-40 | 84-112 | 97/608 | SP3 | cfvi03/293 | pet-3 | ATCC 33236 | ATCC BAA-381 | CCUG 27631 | LMG 9260 | 1485E | 2463D | RM11343 | NCTC 12927 | CCUG 22395 | LMG 11760 | NCTC 11845 | RM2100; ATCC BAA-1060D | RM16701 | RM16712 | Slaughter Beach | LMG 23910 | RM16704 | LMG 24374 | LMG 24377 | RIGS 9880 | LMG 24379 |
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0 | CP011372 | 281848 | G9 | 9 | 36 | 0 | CD56_01550 | 563 | hypothetical protein | PJ17_07485 | G157_01745 | CD56_01550 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1 | CP011372 | 283078 | G9 | 9 | 176 | 0 | CD56_01560 | 432 | uridine kinase | PJ18_07280 | CJE1606 | CJS3_1514 | QZ67_01560 | G157_01760 | VC76_07085 | ATE51_00730 | YSU_01815 | CINS_0296 | CD56_01560 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2 | CP011372 | 399196 | A13 | None | 441 | -57 | 57bp upstream of CD56_02130 | 799 | biotin sulfoxide reductase | CFT03427_0794 CFT03427_0438 | CFF04554_0427 | CFF8240_0429 | CSG_5080 | CFV97608_0429 | CFTSP3_0438 CFTSP3_0849 | CFVI03293_0426 | CR44_04040 CR44_02205 | CHH_0419 CHH_0761 | CIG1485E_0536 | CIG2463D_0536 | CINS_0409 | UPTC4110_0426 | CONCH_0433 | UPTC3659_0450 | Cla_0430 | UPTC16701_0426 | UPTC16712_0432 | CD56_02130 | CPEL_0439 | CAQ16704_0446 | CSUB8521_0462 | CSUB8523_0448 | CVOL_0420 | |||||||||||||||||||||||||||||||||||||||||||||||||||||
3 | CP011372 | 432813 | C9 | None | -1 | -301 | 301bp upstream of CD56_02285 | 5 | 16S ribosomal RNA | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4 | CP011372 | 432822 | T11 | None | -1 | -292 | 292bp upstream of CD56_02285 | 5 | 16S ribosomal RNA | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
5 | CP011372 | 438816 | T10 | None | 114 | 172 | 172bp downstream of CD56_02305 | 40 | 5S ribosomal RNA | AL111168:[399643:399763](+) AL111168:[701938:702058](+) AL111168:[44740:44860](+) | CJJ81176_1728 CJJ81176_1708 CJJ81176_1715 | A911_r08416 A911_r08414 A911_r08418 | PJ16_04010 PJ16_00170 PJ16_02125 | PJ17_02120 PJ17_03615 PJ17_00170 | N135_00797 N135_00034 N135_00479 | N564_02025 N564_01755 N564_01900 | N565_01970 N565_01785 N565_02115 | N755_001795 N755_02140 N755_01995 | PJ18_03695 PJ18_02125 PJ18_00165 | PJ19_04275 PJ19_02390 PJ19_00170 | JJD26997_1519 JJD26997_0041 JJD26997_1263 | HG428754:[390084:390202](+) HG428754:[42978:43096](+) HG428754:[731339:731457](+) | M635_04530 M635_06495 M635_08050 | UC78_1665 UC78_1667 UC78_1666 | C8J_Cj5SC C8J_Cj5SA C8J_Cj5SB | CJ8421_r08797 CJ8421_r08795 | RC25_03450 | CJM1cam_0414 CJM1cam_0033 CJM1cam_0728 | CJH_03765 CJH_02180 CJH_00175 | CJSA_Cj5SC CJSA_Cj5SB CJSA_Cj5SA | ICDCCJ07001_30 ICDCCJ07001_719 ICDCCJ07001_397 | CJM1_0729 CJM1_0415 CJM1_0033 | MTVDSCj20_0033 MTVDSCj20_0405 MTVDSCj20_0764 | A0W68_02090 A0W68_00165 A0W68_04020 | H730_r10084 H730_r10080 H730_r10082 | CjjRM1285_0713 CjjRM1285_0407 CjjRM1285_0033 | AXW77_03645 AXW77_02085 AXW77_00165 | CjjRM3196_0417 CjjRM3196_0034 CjjRM3196_0768 | CjjRM3197_0768 CjjRM3197_0034 CjjRM3197_0417 | CJS3_1812 CJS3_1831 CJS3_1818 | A0W69_04630 A0W69_03005 A0W69_01040 | QZ67_01994 QZ67_01924 QZ67_01894 | N149_0693 N149_0428 N149_0033 | AB430_05015 AB430_01480 AB430_03705 | G157_r08604 G157_r08602 G157_r08600 | VC76_03625 VC76_02260 VC76_00165 | AR446_08170 AR446_04560 AR446_05950 | ATE51_03349 ATE51_00065 ATE51_02145 | YSQ_00175 YSQ_05655 YSQ_07705 | YSS_00175 YSS_01950 YSS_03435 | YSU_06715 YSU_05305 YSU_00180 | A6K30_06575 A6K30_00180 A6K30_00185 A6K30_05210 | CCC13826_2320 CCC13826_2239 CCC13826_2256 | CCON33237_1210 CCON33237_1680 CCON33237_1127 | CCV52592_2229 CCV52592_2159 CCV52592_2186 | CGRAC_1945 CGRAC_1561 CGRAC_0525 | CHAB381_1799 CHAB381_1805 CHAB381_1802 | CHL_1711 CHL_1198 CHL_1486 | CHH_0527 CHH_0161 CHH_1197 | CIG1485E_0652 CIG1485E_0169 CIG1485E_0584 | CIG2463D_0652 CIG2463D_0584 CIG2463D_0172 | CIG11343_0118 CIG11343_0580 CIG11343_0520 | CINS_0441 CINS_1402 CINS_0532 | UPTC4110_0525 UPTC4110_0462 UPTC4110_1432 | CONCH_0525 CONCH_0469 CONCH_1404 | UPTC3659_0487 UPTC3659_0553 UPTC3659_1668 | Cla_0521 Cla_1461 Cla_0464 | UPTC16701_1427 UPTC16701_0461 UPTC16701_0517 | UPTC16712_0469 UPTC16712_1447 UPTC16712_0525 | CD56_07385 CD56_02600 CD56_02305 | CPEL_0475 CPEL_1559 CPEL_0566 | CAQ16704_0485 CAQ16704_1460 CAQ16704_0544 | CSUB8521_1653 CSUB8521_0558 CSUB8521_0499 | CSUB8523_1748 CSUB8523_0544 CSUB8523_0485 | CUREO_0635 CUREO_0489 CUREO_1556 | CVOL_0549 CVOL_0456 CVOL_1447 | ||||||||||
6 | CP011372 | 486607 | C8 | None | -1 | -298 | 298bp upstream of CD56_02580 | 5 | 16S ribosomal RNA | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7 | CP011372 | 633493 | G9 | None | 480 | -12 | 12bp upstream of CD56_03390 | 167 | hypothetical protein | CCV52592_1962 | UPTC4110_0631 | UPTC3659_0716 | UPTC16701_0622 | CD56_03390 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8 | CP011372 | 695975 | G10 | 10 | 443 | 0 | Slaughter Beach [0] | 862 | No data, identified by script | CJJ81176_0759 | A911_04670 | PJ16_05080 | PJ17_03570 | PJ19_05345 | M635_08855 | C8J_0908 C8J_0463 | CJH_03700 | A0W68_05070 | H730_04590 | A0W69_05740 | UPTC4110_0710 UPTC4110_1148 | CONCH_0686 CONCH_1120 CONCH_1473 | UPTC3659_1740 UPTC3659_0546 UPTC3659_0799 UPTC3659_0778 UPTC3659_1382 | Cla_1529 | UPTC16701_0706 UPTC16701_0685 UPTC16701_1140 | UPTC16712_0708 UPTC16712_1172 | CD56_03810 Slaughter Beach [0] CD56_06005 | CPEL_0265 | CAQ16704_0853 CAQ16704_1159 CAQ16704_0537 CAQ16704_1182 CAQ16704_1467 CAQ16704_1533 | CSUB8521_0659 CSUB8521_1739 CSUB8521_1339 | CSUB8523_1841 CSUB8523_0747 CSUB8523_1440 | CVOL_1139 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
9 | CP011372 | 720509 | G10 | None | 481 | 244 | 244bp downstream of CD56_03805 | 406 | MFS transporter | Cj0981c | CJJ81176_1000 | A911_04735 | PJ16_05145 | PJ17_04790 | N135_01018 | N564_00948 | N565_00995 | N755_00987 | PJ18_04850 | PJ19_05410 | JJD26997_0808 | BN867_09710 | M635_00370 | UC78_0939 | C8J_0920 | CJ8421_04875 | RC25_04595 | CJM1cam_0956 | CJH_04920 | CJSA_0924 | ICDCCJ07001_941 | CJM1_0956 | MTVDSCj20_0984 | ERS445056_00966 | A0W68_05135 | H730_05790 | CJE1063 | CjjRM1285_1002 | AXW77_04800 | CjjRM3196_1002 | CjjRM3197_1002 | CJS3_1031 | A0W69_05805 | QZ67_01055 | N149_0918 | AB430_06190 | G157_04070 | VC76_04760 | AR446_03400 | ATE51_01658 | YSQ_04115 | YSS_05320 | YSU_04150 | A6K30_04060 | CINS_0674 | UPTC4110_0709 | CONCH_0706 | UPTC3659_0798 | Cla_0694 | UPTC16701_0705 | UPTC16712_0707 | CD56_03805 | CPEL_0762 | CAQ16704_1162 | CSUB8521_0741 | CSUB8523_0829 | CVOL_0688 | |||||||||||||||||||
10 | CP011372 | 967088 | G11 | None | 482 | 128 | 128bp downstream of CD56_05085 | 187 | aminobenzoate synthetase | Cj0861c | CJJ81176_0877 | A911_04175 | PJ16_04540 | PJ17_04165 | N135_00903 | N564_00835 | N565_00879 | N755_00876 | PJ18_04240 | PJ19_04805 | JJD26997_1009 | BN867_08570 | M635_08585 | UC78_0822 | C8J_0808 | CJ8421_04285 | RC25_03985 | CJH_04310 | CJSA_0815 | ICDCCJ07001_825 | MTVDSCj20_0866 | ERS445056_00840 | A0W68_04565 | H730_05180 | CJE0948 | CjjRM1285_0827 | AXW77_04180 | CjjRM3196_0879 | CjjRM3197_0879 | CJS3_0905 | A0W69_05205 | QZ67_00929 | N149_0858 | AB430_05885 | G157_04365 | VC76_04460 | AR446_03705 | ATE51_01780 | YSQ_04805 | YSS_04685 | YSU_04450 | A6K30_04365 | CINS_0951 | UPTC4110_0962 | CONCH_0938 | UPTC3659_1198 | Cla_0985 | UPTC16701_0953 | UPTC16712_0985 | CD56_05085 | CPEL_1087 | CAQ16704_0974 | CSUB8521_1151 | CSUB8523_1257 | CVOL_0958 | |||||||||||||||||||||
11 | CP011372 | 1155347 | G9 | None | 483 | 241 | 241bp downstream of CD56_06010 | 165 | hypothetical protein | CJJ81176_1656 | N149_0089 | AB430_01185 | G157_00455 | VC76_00460 | AR446_08450 | ATE51_00190 | YSQ_00480 | YSS_00470 | YSU_00465 | A6K30_00480 | CINS_1126 | UPTC4110_1149 | CONCH_1121 | UPTC3659_1383 | Cla_1163 | UPTC16701_1141 | UPTC16712_1173 | CD56_06010 | CPEL_1276 | CAQ16704_1183 | CSUB8521_1340 | CSUB8523_1441 | CVOL_1140 | |||||||||||||||||||||||||||||||||||||||||||||||||||||
12 | CP011372 | 1310317 | G9 | 9 | 19 | 0 | CD56_06730 | 255 | methyltransferase | Cj1420c | CJJ81176_1419 | A911_06906 | PJ16_07835 | N135_02250 | N564_02340 | N565_02420 | N755_02475 | PJ18_07255 | PJ19_07830 | JJD26997_1753 | BN867_06890 | M635_08895 | UC78_1362 | C8J_0641 | CJ8421_07145 | RC25_06635 | CJM1cam_0659 | CJH_07485 | CJSA_1351 | CJM1_0659 | MTVDSCj20_0698 | ERS445056_01536 | A0W68_03575 | H730_08055 | CjjRM1285_1416 | AXW77_06990 | A0W69_08260 | QZ67_01555 | AR446_04835 | YSQ_05930 | YSS_03110 | YSU_05580 | CFT03427_1580 | CFF04554_1630 | CFF8240_1628 | CSG_17620 | CFV97608_1755 | CFTSP3_1645 | CFVI03293_1652 | CR44_08030 | CINS_0302 | CONCH_1266 | UPTC3659_1405 | Cla_0312 | CD56_06730 | CSUB8521_0343 | CSUB8523_0326 | |||||||||||||||||||||||||||||
13 | CP011372 | 1313586 | G9 | 8 | 45 | 0 | CD56_06750 | 334 | 3-oxoacyl-ACP synthase | PJ17_06935 | N149_1272 | G157_02260 | VC76_06585 | AR446_01605 | YSQ_02305 | YSS_07110 | YSU_02320 | A6K30_02280 | Cla_1314 | CD56_06750 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14 | CP011372 | 1442870 | T11 | None | -1 | -281 | 281bp upstream of CD56_07405 | 5 | 16S ribosomal RNA | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15 | CP011372 | 1442881 | C9 | None | -1 | -292 | 292bp upstream of CD56_07405 | 5 | 16S ribosomal RNA | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16 | CP011372 | 1475914 | C9 | None | 446 | -133 | 133bp upstream of CD56_07595 | 694 | hypothetical protein | UPTC4110_1471 | CONCH_1442 | UPTC3659_1708 | Cla_1499 | UPTC16701_1466 | UPTC16712_1501 | CD56_07595 | CPEL_1598 | CAQ16704_1501 | CSUB8521_1703 | CSUB8523_1804 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17 | CP011372 | 1514467 | G10 | 10 | 476 | 0 | CD56_07755 | 1283 | hypothetical protein | UPTC16712_0688 UPTC16712_0746 UPTC16712_0018 | CD56_07755 CD56_05090 |