Analysis of poly-G tracts in ICDCCJ07001


Strain name: ICDCCJ07001
Filepath: ../polyG/campy.new\275748-315017338.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP00202936898C10None31106106bp downstream of ICDCCJ07001_25331L-asparaginaseCj0029CJJ81176_0056A911_00140PJ16_00145PJ17_00145N135_00029N564_00028N565_00028N755_001770PJ18_00140PJ19_00145JJD26997_0031BN867_00280M635_04505UC78_0028C8J_0028CJ8421_00150RC25_08535CJM1cam_0027CJH_00150CJSA_0029ICDCCJ07001_25CJM1_0027MTVDSCj20_0028ERS445056_00031A0W68_00140H730_00150CJE0029CjjRM1285_0028AXW77_00140CjjRM3196_0029CjjRM3197_0029CJS3_0029A0W69_01015QZ67_00031N149_0028AB430_01505G157_00140VC76_00145AR446_08145ATE51_00056YSQ_00150YSS_00150YSU_00155A6K30_00145CINS_0082UPTC4110_0082CONCH_0079UPTC3659_0098Cla_0080UPTC16701_0089UPTC16712_0091CD56_00415CPEL_0081CAQ16704_0080CSUB8521_0091CSUB8523_0084CVOL_0080
1CP00202972567G101010ICDCCJ07001_49254putative iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
2CP00202984058G7730ICDCCJ07001_62409No annotation dataCj0067CJJ81176_0105A911_00320PJ16_00350PJ17_00350N135_00070N564_01795N565_01825N755_01830PJ18_00350PJ19_00350JJD26997_0077BN867_00590M635_04705UC78_0071C8J_0060CJ8421_00350RC25_00140CJM1cam_0069CJH_00355CJSA_0061ICDCCJ07001_62CJM1_0069MTVDSCj20_0065ERS445056_00069A0W68_00355CJE0064CjjRM1285_0071AXW77_00345CjjRM3196_0068CjjRM3197_0068CJS3_0067A0W69_01215QZ67_00074N149_0065AB430_01315G157_00325VC76_00335AR446_08320ATE51_00140YSQ_00350YSS_00350YSU_00335A6K30_00350CFT03427_1464CFF04554_1516CFF8240_1504CSG_16390CFV97608_1638CFTSP3_1528CFVI03293_1538CR44_07420CGRAC_1950CHAB381_1212CHL_0206CHH_1542CIG1485E_1454CIG2463D_1647CIG11343_1398CINS_0221UPTC4110_0229CONCH_0227UPTC3659_0246Cla_0229UPTC16701_0236UPTC16712_0235CD56_01155CPEL_0232CAQ16704_0233CSUB8521_0238CSUB8523_0232CUREO_0286CVOL_0223
3CP002029397924C1111390ICDCCJ07001_392239putative periplasmic ATP /GTP-binding proteinCj0431CJJ81176_0451A911_02100PJ16_02100PJ17_02095N135_00474N564_00412N565_00460N755_00461PJ18_02100PJ19_02365JJD26997_1525BN867_04030M635_06470UC78_0411C8J_0406CJ8421_02160RC25_02135CJM1cam_0409CJH_02155CJSA_0403ICDCCJ07001_392CJM1_0409MTVDSCj20_0400ERS445056_00425A0W68_02065H730_02730CJE0481CjjRM1285_0402AXW77_02060CjjRM3196_0412CjjRM3197_0412CJS3_0420A0W69_02980QZ67_00433N149_0422AB430_03675G157_06495VC76_02235AR446_05980ATE51_03360YSQ_07735YSS_01920YSU_06745A6K30_06605CINS_0412UPTC4110_0429CONCH_0436UPTC3659_0453Cla_0433UPTC16701_0429UPTC16712_0435CD56_02145CPEL_0442CAQ16704_0449CSUB8521_0465CSUB8523_0451CVOL_0423
4CP002029492973G771280ICDCCJ07001_480387succinyl-CoA synthase, beta subunitCj0533CJJ81176_0558A911_02595PJ16_02645PJ17_02580N135_00582N564_00519N565_00567N755_00566PJ18_02650PJ19_02910JJD26997_1397BN867_05430M635_07010UC78_0517C8J_0494CJ8421_02605RC25_02590CJM1cam_0508CJH_02695CJSA_0500ICDCCJ07001_480CJM1_0508MTVDSCj20_0550ERS445056_00519A0W68_02600H730_03540CJE0637CjjRM1285_0504AXW77_02595CjjRM3196_0510CjjRM3197_0510CJS3_0523A0W69_03515QZ67_00543N149_0522AB430_04165G157_06000VC76_02780AR446_05440ATE51_03142YSQ_07190YSS_02465YSU_06200A6K30_06065CCV52592_1882CFT03427_0904CFF04554_0912CFF8240_0911CSG_10810CFV97608_0972CFTSP3_0959CFVI03293_0843CR44_04595CHAB381_1137CUREO_0778
5CP002029522299G10None26-5353bp upstream of ICDCCJ07001_510247conserved hypothetical proteinCJJ81176_0590CJH_02860ICDCCJ07001_510
6CP002029572077G10980ICDCCJ07001_566421conserved hypothetical proteinCj0617CJJ81176_0646A911_03015PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_1051M635_07445UC78_1285CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_08370
AB430_04500
AR446_05110ATE51_02354YSQ_06210YSS_02830YSU_05855A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
UPTC16712_0815CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
7CP002029601419AG66410ICDCCJ07001_597164putative integral membrane proteinCj0651CJJ81176_0679A911_03180PJ16_03240PJ17_03155N135_00703N564_00638N565_00685N755_00683PJ18_03245PJ19_03505JJD26997_1348BN867_06570M635_07605UC78_0632C8J_0610CJ8421_03185RC25_03130CJM1cam_0626CJH_03295CJSA_0618ICDCCJ07001_597CJM1_0626MTVDSCj20_0668ERS445056_00636A0W68_03065H730_04135CJE0754CjjRM1285_0622AXW77_03185CjjRM3196_0628CjjRM3197_0628CJS3_0641A0W69_04110QZ67_00667N149_0621AB430_04655G157_05505VC76_03270AR446_04955ATE51_02290YSQ_06050YSS_02990YSU_05700A6K30_05570CVOL_0654
8CP002029631307C99110ICDCCJ07001_622464invasion phenotype proteinCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575
9CP002029721070G1091290ICDCCJ07001_711624adhesive protein CupB5, putativeCJJ81176_0761ICDCCJ07001_711ERS445056_00726CjjRM1285_0707CjjRM3196_0762CjjRM3197_0762
10CP002029724152C8None122626bp downstream of ICDCCJ07001_714110No annotation dataCJH_03740ICDCCJ07001_714CJE0843CJS3_0798
11CP0020291026398G99430ICDCCJ07001_1013960type II restriction-modification enzymeCj1051cPJ16_05500PJ17_05405N135_01087N564_01019N565_01064N755_01057PJ18_05205PJ19_05765BN867_10440M635_00715CJ8421_05225CJH_05290CJSA_0994ICDCCJ07001_1013H730_06230AXW77_05180QZ67_01124N149_0987G157_03715VC76_05120AR446_03050YSQ_03745YSS_05685YSU_03790A6K30_03710
12CP0020291268066G7None15-224224bp upstream of ICDCCJ07001_1243312hypothetical proteinCj1295CJJ81176_1313A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
13CP0020291275052G9980ICDCCJ07001_1249405hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07710
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1265
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06540
VC76_06590
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSQ_02345
YSQ_02340
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
14CP0020291278401G99290ICDCCJ07001_1253239formyl transferase domain proteinCJJ81176_1325PJ17_06920JJD26997_0414C8J_1241RC25_06185CJM1cam_1280ICDCCJ07001_1253CJM1_1280MTVDSCj20_1304ERS445056_01420
ERS445056_01419
CJE1498CjjRM3196_1322CjjRM3197_1322CJS3_1403N149_1269G157_02280VC76_06560AR446_01620YSQ_02320YSU_02350A6K30_02295Cla_1312CVOL_1294
15CP0020291279487G9980ICDCCJ07001_1254403conserved hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
16CP0020291281239G99630ICDCCJ07001_1256213conserved hypothetical proteinJJD26997_0405ICDCCJ07001_1256CjjRM3196_1326CjjRM3197_1326CINS_1273UPTC4110_1297CONCH_1272UPTC3659_1533UPTC16701_1291UPTC16712_1313CSUB8521_1500CSUB8523_1596
17CP0020291286697AT6None130-2323bp upstream of ICDCCJ07001_1262378flagellin modification protein, PseACj1316cCJJ81176_1333A911_06400PJ16_07330PJ17_06970N135_01405N564_01334N565_01373N755_01369PJ18_06775PJ19_07330JJD26997_0398BN867_13050M635_02270UC78_1265C8J_1250CJ8421_06555RC25_06230CJM1cam_1289CJH_06660CJSA_1254ICDCCJ07001_1262CJM1_1289MTVDSCj20_1312ERS445056_01428A0W68_07085H730_07530CJE1511CjjRM1285_1330AXW77_06480CjjRM3196_1333CjjRM3197_1333CJS3_1416A0W69_07765QZ67_01451N149_1279AB430_08245VC76_06625AR446_01570ATE51_00932YSQ_02265YSS_07150YSU_02280A6K30_02245CINS_1280UPTC4110_1304CONCH_1279Cla_1328UPTC16701_1298UPTC16712_1320CD56_06785CSUB8521_1510CSUB8523_1606CVOL_1311
18CP0020291288129G991310ICDCCJ07001_1264171Protein of unknown function familyICDCCJ07001_1264
ICDCCJ07001_1267
A0W68_07175
19CP0020291291955G991310ICDCCJ07001_1267140hypothetical proteinICDCCJ07001_1267
ICDCCJ07001_1264
A0W68_07175
20CP0020291301878G9980ICDCCJ07001_1274413hypothetical proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0368BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
21CP0020291376454G11None87-1111bp upstream of ICDCCJ07001_1344394capsule polysaccharide export protein KpsSCj1413cCJJ81176_1412A911_06875PJ16_07800PJ17_07435N135_01502N564_01410N565_01450N755_01447PJ18_07220PJ19_07795JJD26997_1746BN867_13930M635_02740UC78_1355C8J_1327CJ8421_07110RC25_06600CJM1cam_1370CJH_07450CJSA_1344ICDCCJ07001_1344CJM1_1370MTVDSCj20_1389ERS445056_01529A0W68_03610H730_08020CJE1600CjjRM1285_1409AXW77_06955CjjRM3196_1413CjjRM3197_1413CJS3_1508A0W69_08225QZ67_01548N149_1374AB430_08710G157_01780VC76_07065AR446_01180ATE51_00740YSQ_01805YSS_07610YSU_01835A6K30_01780CINS_0313UPTC4110_0314CONCH_0327UPTC3659_0336Cla_0319UPTC16701_0321UPTC16712_0323CD56_01580CPEL_0325CAQ16704_0325CSUB8521_0351CSUB8523_0333CVOL_0313
22CP0020291384175G1010990ICDCCJ07001_1351589putative glycosyltransferaseBN867_13990ICDCCJ07001_1351CjjRM3196_1419CjjRM3197_1419
23CP0020291384351G98360ICDCCJ07001_1352303putative sugar transferasePJ17_0748032488 [0]ICDCCJ07001_1352AXW77_07185CjjRM3196_1420CjjRM3197_1420
24CP0020291386174T1010880ICDCCJ07001_1353221capsular biosynthesis nucleotidyltransferase, putativeCj1423cCJJ81176_1422PJ16_07850N135_01513N564_02350N565_02430N755_02485PJ18_07290PJ19_07845JJD26997_1755BN867_14000M635_02840UC78_1364CJ8421_07155RC25_06685CJH_07500ICDCCJ07001_1353ERS445056_01538A0W68_07450H730_08135CJE1608AXW77_07065CjjRM3196_1421CjjRM3197_1421CJS3_1516A0W69_08285QZ67_01562AB430_08765YSQ_01745CHL_0876CINS_0294UPTC3659_0328UPTC16701_0318UPTC16712_0316CAQ16704_0317CSUB8521_0329
25CP0020291387626G11101320ICDCCJ07001_1355412putative sugar transferaseICDCCJ07001_1355CjjRM3196_1423CjjRM3197_1423
26CP0020291391772G910700ICDCCJ07001_1359386GDP-4-keto-6-deoxy-D-sugar-3, 5-epimerase-4-reduct aseCj1428cCJJ81176_1427PJ16_07875N135_01519N564_01426N565_01466N755_01462PJ19_07870JJD26997_1765
JJD26997_0706
JJD26997_1764
BN867_14040UC78_1369CJ8421_07180ICDCCJ07001_1359
ICDCCJ07001_1358
ERS445056_01543A0W68_07475H730_08160CJE1612CjjRM3196_1426
CjjRM3196_1427
CjjRM3197_1426
CjjRM3197_1427
CJS3_1520A0W69_08310YSQ_01725CCON33237_0118CIG2463D_1604CINS_0289CAQ16704_0313CSUB8521_0324
CSUB8521_0325
27CP0020291398343G11101330ICDCCJ07001_1365210dTDP-4-dehydrorhamnose 3,5-epimerasePJ17_07520ICDCCJ07001_1365CjjRM3196_1433CjjRM3197_1433UPTC16701_1209CVOL_0302
28CP0020291409313AT771000ICDCCJ07001_1374456glycosyl transferase, group 2 family proteinCj1138
Cj1136
CJJ81176_1153A911_05515
A911_05505
PJ16_05920
PJ16_05930
PJ17_07545
PJ17_05820
N135_01175
N135_01173
N564_02160
N564_02170
N565_02240
N565_02250
N755_02295
N755_02305
PJ18_05635PJ19_06195
PJ19_06185
BN867_14120M635_01385CJH_07560CJSA_1080
CJSA_1078
ICDCCJ07001_1374
ICDCCJ07001_1094
ERS445056_01245A0W68_05915CjjRM1285_1153AXW77_05590CjjRM3196_1153
CjjRM3196_1442
CjjRM3197_1153
CjjRM3197_1442
A0W69_06880
A0W69_06870
QZ67_01214G157_01675UPTC4110_0303
UPTC4110_1229
UPTC3659_1462Cla_1242UPTC16701_0305CD56_06415
CD56_01490
CPEL_1348CAQ16704_1255
CAQ16704_1253
CSUB8521_1431CSUB8523_1526
29CP0020291634466G11111340ICDCCJ07001_1596419major facilitator family proteinJJD26997_2061UC78_1623ICDCCJ07001_1596ERS445056_01817CjjRM1285_1681CjjRM3196_1682CjjRM3197_1682CINS_0889UPTC4110_0898CONCH_0873UPTC3659_1132UPTC16712_0919CD56_04765CPEL_0992CSUB8521_1087CSUB8523_1192CVOL_0897