Analysis of poly-G tracts in 35925B2


Strain name: 35925B2
Filepath: ../polyG/campy.new\301191-761233003.gb
Species: C. jejuni

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP01090655618G9900UC78_00401240Modification methylase PaeR7ICj0031CJJ81176_0068A911_00150PJ16_00180PJ17_00185N135_00036N564_00030N565_00030N755_00030PJ18_00175PJ19_00180JJD26997_0043BN867_00300UC78_0040C8J_0034CJ8421_00165RC25_00010CJM1cam_0039CJH_00185CJSA_0032ICDCCJ07001_36CJM1_0039MTVDSCj20_0039ERS445056_00036A0W68_00175H730_00165CJE0031CjjRM1285_0039AXW77_00175CjjRM3196_0040CjjRM3197_0040CJS3_0031A0W69_01050QZ67_00037N149_0037AB430_01470G157_00150VC76_00185AR446_08190ATE51_00072YSQ_00185YSS_00195YSU_00200A6K30_00205CINS_0480UPTC4110_1431CONCH_1400UPTC3659_1667Cla_1457UPTC16701_1425UPTC16712_1445CD56_07380CPEL_1557CSUB8521_1649CSUB8523_1744CVOL_1446
1CP01090674654G91010UC78_0054241BacteriohemerythrinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265
2CP010906535308G10None40-5656bp upstream of UC78_0549372GTPase EraPJ17_02740UC78_0549CJ8421_02765ERS445056_00552CJE0670CJS3_0556
3CP010906642501C109110UC78_0661465hypothetical proteinCj0685cCJJ81176_0708A911_03335PJ16_03700PJ17_03315N135_00732N564_01975N565_00713N755_00711PJ18_03385PJ19_03965BN867_07010M635_07755UC78_0661C8J_0652CJ8421_03370RC25_03155CJM1cam_0667CJSA_0649ICDCCJ07001_622CJM1_0667MTVDSCj20_0707ERS445056_00667A0W68_03215H730_04335CJE0783CjjRM1285_0649AXW77_03350CjjRM3196_0654CjjRM3197_0654CJS3_0680A0W69_04260QZ67_00698AR446_04830YSQ_05925YSS_03165YSU_05575CINS_0307
4CP010906696277C10None122626bp downstream of UC78_0713480Heme/hemopexin transporter protein HuxB precursorCj0742CJJ81176_0764PJ16_03985PJ17_03590N135_02060N564_02000N565_02090N755_02115PJ18_03670PJ19_04250BN867_07560M635_08925UC78_0713C8J_0706RC25_03425CJM1cam_0723CJH_03735CJSA_0706ICDCCJ07001_713CJM1_0723MTVDSCj20_0759ERS445056_00730A0W68_03500CjjRM1285_0708AXW77_03620CjjRM3196_0763CjjRM3197_0763A0W69_04545QZ67_00815
5CP010906901260G991040UC78_0928866hypothetical proteinCj0967A911_04670PJ16_05080N135_01007N564_00936N565_00983N755_00975PJ18_04785PJ19_05345BN867_09580
BN867_05110
M635_08855UC78_0928C8J_0908
C8J_0463
CJ8421_04795RC25_04540CJM1cam_0477
CJM1cam_0944
CJH_04870CJSA_0911ICDCCJ07001_933CJM1_0477
CJM1_0944
MTVDSCj20_0520
MTVDSCj20_0974
ERS445056_00950A0W68_05070CJE1047CjjRM1285_0472
CjjRM1285_0992
AXW77_04735CjjRM3196_0991CjjRM3197_0991A0W69_05740QZ67_01044CD56_03810
CD56_06005
6CP0109061069916G89140UC78_1098295hypothetical proteinCj1144cA911_05550PJ16_05965N135_02190N564_01110N565_02255N755_02315PJ19_06230UC78_1098CJSA_1086A0W68_05955H730_06670CJE1281CJS3_1186A0W69_06915CPEL_1344CAQ16704_1249CSUB8523_1524
7CP0109061217884G99150UC78_1247435hypothetical proteinCj1295CJJ81176_1312
CJJ81176_1313
A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
8CP0109061228566G10980UC78_1259405hypothetical proteinCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07710
A0W69_07730
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
9CP0109061235114G99170UC78_1267650hypothetical proteinCj1318
Cj1333
Cj1335
CJJ81176_1336A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07050
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ18_06785
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02360
M635_02285
M635_02370
UC78_1278
UC78_1267
UC78_1276
C8J_1253CJ8421_06665RC25_06245CJM1cam_1292CJH_06700CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265
ICDCCJ07001_1268
CJM1_1292MTVDSCj20_1315ERS445056_01444
ERS445056_01446
ERS445056_01430
A0W68_07165H730_07620
H730_07630
CJE1524
CJE1522
CjjRM1285_1333AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1337
CjjRM3196_1335
CjjRM3197_1337
CjjRM3197_1335
CJS3_1430
CJS3_1427
A0W69_07845QZ67_01453
QZ67_01469
QZ67_01471
N149_1281
N149_1298
N149_1296
AB430_08255
AB430_08325
AB430_08340
VC76_06695AR446_01555
AR446_01560
AR446_01545
ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02175
YSQ_02185
YSQ_02255
YSS_07230
YSS_07245
YSS_07160
YSS_07240
YSU_02220
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
A6K30_02155
CINS_1188CONCH_0163CSUB8521_0178
CSUB8521_0235
CSUB8523_1511
CSUB8523_0172
CVOL_0220
CVOL_1306
CVOL_1208
10CP0109061239575G10None105-178178bp upstream of UC78_1270334N,N'-diacetyllegionaminic acid synthaseCj1327A911_06450PJ16_07380PJ17_07020N135_01415N564_02255N565_02345N755_02405PJ18_06820PJ19_07380JJD26997_0385BN867_13120M635_02330UC78_1270CJ8421_06620CJSA_1263ERS445056_01438A0W68_07135H730_07590CJE1516AXW77_06535CJS3_1421A0W69_07815QZ67_01463N149_1290AB430_08295G157_02185VC76_06660ATE51_00910YSQ_02215YSS_07200YSU_02250A6K30_02195CCC13826_2303CCON33237_1630CIG1485E_0029CINS_1194CONCH_0304Cla_1235CD56_06365CSUB8521_1417CSUB8523_1517CVOL_1214
11CP0109061245478G99170UC78_1276655hypothetical proteinCj1318
Cj1333
Cj1335
CJJ81176_1336A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07050
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ18_06785
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02360
M635_02285
M635_02370
UC78_1278
UC78_1267
UC78_1276
C8J_1253CJ8421_06665RC25_06245CJM1cam_1292CJH_06700CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265
ICDCCJ07001_1268
CJM1_1292MTVDSCj20_1315ERS445056_01444
ERS445056_01446
ERS445056_01430
A0W68_07165H730_07620
H730_07630
CJE1522
CJE1524
CjjRM1285_1333AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1337
CjjRM3196_1335
CjjRM3197_1337
CjjRM3197_1335
CJS3_1430
CJS3_1427
A0W69_07845QZ67_01453
QZ67_01469
QZ67_01471
N149_1281
N149_1298
N149_1296
AB430_08255
AB430_08325
AB430_08340
VC76_06695AR446_01555
AR446_01560
AR446_01545
ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02175
YSQ_02185
YSQ_02255
YSS_07230
YSS_07245
YSS_07160
YSS_07240
YSU_02220
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
A6K30_02155
CINS_1188CONCH_0163CSUB8521_0178
CSUB8521_0235
CSUB8523_0172CVOL_0220
CVOL_1306
12CP0109061249311G99170UC78_1278650hypothetical proteinCj1318
Cj1333
Cj1335
CJJ81176_1336A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07050
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ18_06785
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02360
M635_02285
M635_02370
UC78_1278
UC78_1267
UC78_1276
C8J_1253CJ8421_06665RC25_06245CJM1cam_1292CJH_06700CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265
ICDCCJ07001_1268
CJM1_1292MTVDSCj20_1315ERS445056_01446
ERS445056_01430
ERS445056_01444
A0W68_07165H730_07620
H730_07630
CJE1524
CJE1522
CjjRM1285_1333AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1337
CjjRM3196_1335
CjjRM3197_1337
CjjRM3197_1335
CJS3_1430
CJS3_1427
A0W69_07845QZ67_01453
QZ67_01469
QZ67_01471
N149_1281
N149_1298
N149_1296
AB430_08255
AB430_08325
AB430_08340
VC76_06695AR446_01555
AR446_01560
AR446_01545
ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02185
YSQ_02175
YSQ_02255
YSS_07230
YSS_07245
YSS_07160
YSS_07240
YSU_02220
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
A6K30_02155
CINS_1188CONCH_0163Cla_0168CSUB8521_0178
CSUB8521_0235
CSUB8523_0172CVOL_0220
CVOL_1306
13CP0109061260999G10980UC78_1285414hypothetical proteinCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_0368BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
CSUB8521_1498
CSUB8521_0845
CSUB8523_1594CVOL_1289
14CP0109061281306G9None98-4242bp upstream of UC78_1307373hypothetical proteinPJ17_07190UC78_1307ICDCCJ07001_1296CJE1550AXW77_06705CJS3_1456
15CP0109061338086G99190UC78_1362257hypothetical proteinCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
16CP0109061340277G99200UC78_1363609hypothetical proteinCj1421cCJJ81176_1421A911_06907PJ16_07840N135_02255N564_01419N565_01459N755_01456PJ18_07330
PJ18_07260
PJ19_07835JJD26997_1754
JJD26997_0570
M635_02775
M635_02880
UC78_1363CJ8421_07150CJH_07495CJSA_1352ERS445056_01537H730_08070CjjRM1285_1417AXW77_07105
AXW77_06995
QZ67_01571
QZ67_01556
17CP0109061346514G991060UC78_1371742F5/8 type C domain proteinUC78_1371
18CP0109061348745G991070UC78_1372548hypothetical proteinUC78_1372
19CP0109061374122A10101080UC78_1398144FlgN proteinCj1465CJJ81176_1458A911_07060PJ16_08055PJ17_07675N135_01556N564_01458N565_01497N755_01499PJ18_07450PJ19_08050JJD26997_1813BN867_14370M635_03025UC78_1398C8J_1371CJ8421_07340RC25_06885CJM1cam_1411CJH_07685CJSA_1389ICDCCJ07001_1397CJM1_1411MTVDSCj20_1431ERS445056_01585A0W68_07625H730_08310CJE1639CjjRM1285_1460AXW77_07260CjjRM3196_1466CjjRM3197_1466CJS3_1546A0W69_08460QZ67_01596N149_1414AB430_08930
AB430_00035
G157_01560VC76_07235AR446_00980ATE51_00640YSQ_01580YSS_07825YSU_01595A6K30_01615CINS_0380UPTC4110_0392CONCH_0399UPTC3659_0413Cla_0397UPTC16701_0392UPTC16712_0394CD56_01960CPEL_0407CAQ16704_0412CSUB8521_0430CSUB8523_0415CVOL_0387