CINS_1188 vs: Cj1318 in NCTC 11168 (Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome.)
Gene length: 1950bp / 650aa PV: Yes
Function: motility accessory factor (function unknown)

Score: 1716.00 bits: 744.04 e-value: 0.000000
length: 614 gaps: 20 id: 373 positives: 447 coverage: 0.57 query coverage 0.59

CINS_1188 +36 DNLDINLLNTQ---------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEAR +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ AR
Cj1318 +1246801 DNLDINLKDTSIKNNGGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQNAR +1247098

CINS_1188 +136 LVIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKN +235
L++++ + L+ +DY LCS P F FSR YFLEL S YYE++++DVL +N L FKN I GN P D LQGIEQFVYN+P MI+ PSYKELL KRKN
Cj1318 +1247101 LMVLENDKLQTQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNIILRNGNDPKDALQGIEQFVYNLPQMITHPSYKELLSKRKN +1247398

CINS_1188 +236 LSDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVI +335
LSDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER ++TAEFFN DFGEFDKDIVF+ VVHP A +YL K +V+
Cj1318 +1247401 LSDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFICAGVVHPKAIEYL--KGRNLVIT +1247698

CINS_1188 +336 SENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEK +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
Cj1318 +1247701 QKVLAFPYYINLKDFSYAAVGLSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGNGKVETHSIWLLFKNWFEN +1247998

CINS_1188 +436 LI---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKEL-DSLNKMMNDFL- +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + N + N +L
Cj1318 +1248001 EMIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFNNIQNIYLN +1248298

CINS_1188 +536 LSANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVL +635
L E LN I +D+ K K+EN K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
Cj1318 +1248301 LNKKENDLNLAIRKIDEFKNKLENIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKL +1248598

CINS_1188 +636 INRGFEKLVEKICK +649
R +K +E++ +
Cj1318 +1248601 KERKLDKWMERVRR +1248640

CINS_1188 vs: Cj1333 in NCTC 11168 (Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome.)
Gene length: 1962bp / 654aa PV: No
Function: PseD protein

Score: 1696.00 bits: 735.41 e-value: 0.000000
length: 609 gaps: 10 id: 360 positives: 445 coverage: 0.55 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL+I+ T L
Cj1333 +1259812 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQSARLMILQTSSL +1260109

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
Cj1333 +1260112 DIELFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQDFKDSILSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1260409

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+NIKPDYV LERI +T+EFFNNDFGEFDKDI+FVLKS VHP KYL+K +++S + FIN+
Cj1333 +1260412 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHNIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFVLKSYVHPHTTKYLQKNNRNFMLVSTYASFINY +1260709

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLIS-- +435
+ L + GY G SVANM + LA L HKNI+ IGQDLAYA++G SH KDY N F+ D ++ T AYG V++ F+W LF+ E+ ++
Cj1333 +1260712 LKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIGQDLAYAKDGLSHTKDYSNLDKHEGHFQRDKNKYT-TQAYGDNGKVESSFVWTLFRHNFEQDVANA +1261009

CINS_1188 +436 -RNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANER +535
+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D F K D + N M NE
Cj1333 +1261012 KKNYYITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSNKFIKSYDKIKNSFMSLQNSQENET +1261309

CINS_1188 +536 LLNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGF +635
L+ ++I +DKIK ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
Cj1333 +1261312 LIKEIIKDIDKIKTQIDELYNTQKDLMQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKL +1261609

CINS_1188 +636 EKLVEKICK +644
+K +E++ +
Cj1333 +1261612 DKWMERVRR +1261636

CINS_1188 vs: Cj1335 in NCTC 11168 (Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome.)
Gene length: 1948bp / 649aa PV: Yes
Function: motility accessory factor (function unknown)

Score: 1702.00 bits: 738.00 e-value: 0.000000
length: 591 gaps: 11 id: 365 positives: 437 coverage: 0.56 query coverage 0.57

CINS_1188 +50 LMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPM +149
L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL++++ + L+ +DY LCS P
Cj1335 +1263697 LLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQNARLMVLENDKLQTQDYTELCSSKPF +1263994

CINS_1188 +150 FNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQ +249
F FSR YFLEL S YYE++++DVL +N L FKN I GN P D LQGIEQFVYN+P MI+ PSYKELL KRKNLSDTAIIVSTGPSL KQLPLLK+
Cj1335 +1263997 FQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNIILRNGNDPKDALQGIEQFVYNLPQMITHPSYKELLSKRKNLSDTAIIVSTGPSLTKQLPLLKK +1264294

CINS_1188 +250 YSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPS +349
Y+SKATIFCADS+YPILAK+ IKPDYVCMLER ++TAEFFN DFGEFDKDIVF+ VVHP A +YL K +V+ + F +I+L++ YA G S
Cj1335 +1264297 YASKATIFCADSSYPILAKHGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFICAGVVHPKAIEYL--KGRNLVITQKVLAFPYYINLKDFSYAAVGLS +1264594

CINS_1188 +350 VANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI---SRNENCATYNCTEGGARI +449
VA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E + +R TYNCTEGGARI
Cj1335 +1264597 VAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGNGKVETHSIWLLFKNWFENEMIPNTRKMGITTYNCTEGGARI +1264894

CINS_1188 +450 EGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKEL-DSLNKMMNDFL-LSANERLLNDMILHVDKIKIKVE +549
EG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + N + N +L L E LN I +D+ K K+E
Cj1335 +1264897 EGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFNNIQNIYLNLNKKENDLNLAIRKIDEFKNKLE +1265194

CINS_1188 +550 NFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +640
N K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
Cj1335 +1265197 NIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRR +1265467

CINS_1188 vs: CJJ81176_1336 in 81-176 (Campylobacter jejuni subsp. jejuni 81-176, complete genome.)
Gene length: 1965bp / 655aa PV: No
Function: PseD

Score: 1464.00 bits: 635.34 e-value: 0.000000
length: 608 gaps: 10 id: 331 positives: 425 coverage: 0.51 query coverage 0.52

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL NT DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL++ L+II+TN L
CJ..6_1336 +1249538 DNLDINLQNTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWTMFHILDFSNELQKNNLIIINTNIL +1249835

CINS_1188 +136 KRRDY--DYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAII +235
D Y +N FSR YFLEL SNYYE+Y +++L++N+ +L + K SI +GN ID L GI++F+YN+ +++ P + L KR LSDTAII
CJ..6_1336 +1249838 SEFDLLNFYKKANSIFLQFSRIYFLELISNYYERYNEEILKLNDTILSTIKISIIQYGNDSIDNLMGIKHFIYNLSKLLTHPHSEIFLKKRYKLSDTAII +1250135

CINS_1188 +236 VSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFI +335
VSTGPSL KQLPLLKQY+ KATIFCADSAYPILAK+NIKPDYVCMLER DI ++ F+NDF EFDK I+F+L SVVH ++LE+ + +++ F
CJ..6_1336 +1250138 VSTGPSLTKQLPLLKQYANKATIFCADSAYPILAKHNIKPDYVCMLERDDIVSKCFDNDFKEFDKGILFILASVVHKEVIEFLERNNREYMLVPRAYDFF +1250435

CINS_1188 +336 NFIDLQNLGYAYSG-PSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEH---IDTLAYGGGYMVKTHFIWLLFKNEMEKLIS +435
+++L G SVA M Y LA L HKNIIFIGQDLAY+++ SH KD+ E + ++AYGG V++ + W LF+ EK IS
CJ..6_1336 +1250438 YYLNLAKYFQPIDGMVSVAHMNYWLAKFLSHKNIIFIGQDLAYSKDQSSHAKDFIHEKLHEGHFQKDENLFTSIAYGGKGEVESSYFWKLFREIFEKWIS +1250735

CINS_1188 +436 RNEN-CATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKM---MNDFLLSAN +535
+ N YNCTEGGARI+G IEKPF CE LL K+L KPF KL+ LNINKQNEL+LKAY KI +SI C D K +E + + ++ + + +
CJ..6_1336 +1250738 HDNNFINIYNCTEGGARIKGTIEKPFLWACENLLGKDLNKPFPKLNPLNINKQNELMLKAYNKIYKSIYHCKDFNKKLLQEYNEIKELYLTLENLQIEES +1251035

CINS_1188 +536 ERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRG +635
+ LLN +I +D IK ++++ K M DLYEILGP +VQFELNLARIYVLNPKT EDSFNKS++WIKEHLEWI++I HI AQ+ L +NI LE L R
CJ..6_1336 +1251038 KELLNFIIQKIDTIKYQIDDAKNMQDLYEILGPLLVQFELNLARIYVLNPKTPEDSFNKSLIWIKEHLEWIEMIYGHIQAQENALFENIIPLEQKLKERK +1251335

CINS_1188 +636 FEKLVEKI +643
+K + +I
CJ..6_1336 +1251338 MQKYLRRI +1251359

CINS_1188 vs: A911_06490 in PT14 (Campylobacter jejuni subsp. jejuni PT14, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: motility accessory factor

Score: 1709.00 bits: 741.02 e-value: 0.000000
length: 611 gaps: 15 id: 364 positives: 441 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL
A911_06490 +1263088 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRL +1263385

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY LCS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
A911_06490 +1263388 MILENDKLQAQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1263685

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDI+F+ VVHP A +YL K +V+
A911_06490 +1263688 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIIFICAGVVHPKAIEYL--KDRNLVITQ +1263985

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
A911_06490 +1263988 KVLAFPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +1264285

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
A911_06490 +1264288 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNE +1264585

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
A911_06490 +1264588 KEEDINLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1264885

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
A911_06490 +1264888 KLDKWMERVRR +1264918

CINS_1188 vs: A911_06480 in PT14 (Campylobacter jejuni subsp. jejuni PT14, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1732.00 bits: 750.94 e-value: 0.000000
length: 605 gaps: 5 id: 360 positives: 442 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL+I+ T L
A911_06480 +1259279 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRLMILQTSSL +1259576

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
A911_06480 +1259579 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1259876

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
A911_06480 +1259879 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERKAITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1260176

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA++ES Y H+ TLAYGG +KTH +WL+FK +E+ + + +
A911_06480 +1260179 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +1260476

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D F K D + N M NE + +
A911_06480 +1260479 DTKIYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEIFIQE +1260776

CINS_1188 +536 MILHVDKIKIKVENF-KTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K +++ T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
A911_06480 +1260779 IIQDIDKTKTQIDELCNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1261076

CINS_1188 +636 EKICK +640
E++ +
A911_06480 +1261079 ERVRR +1261091

CINS_1188 vs: PJ16_07340 in 00-0949 (Campylobacter jejuni subsp. jejuni strain 00-0949, complete genome.)
Gene length: 1941bp / 647aa PV: Yes
Function: PseD protein

Score: 1746.00 bits: 756.98 e-value: 0.000000
length: 610 gaps: 15 id: 370 positives: 451 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
PJ16_07340 +1354493 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQNARL +1354790

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++TN L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
PJ16_07340 +1354793 IVLNTNKLEIQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1355090

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER ++TAEFFN DFGEFDKDIVF+ VVHP A +YL+ + K ++I
PJ16_07340 +1355093 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFICAGVVHPKAIEYLKGRNRKYLIIP +1355390

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+F +I L+ + Y PSVA M+Y L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH W+ FK +E +
PJ16_07340 +1355393 RYLYFPIYIKLKYFDFLYNTPSVAHMSYFLSVLLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKKEIKTHEFWIFFKQILEAM +1355690

CINS_1188 +436 ISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER +535
I + TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + + LS NE+
PJ16_07340 +1355693 IIKY-HITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFEKIQSIYLSLNEK +1355990

CINS_1188 +536 --LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRG +635
LN I +D K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
PJ16_07340 +1355993 EEYLNLAIEKIDGFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERK +1356290

CINS_1188 +636 FEKLVEKICK +645
+K +E++ +
PJ16_07340 +1356293 LDKWMERVRR +1356320

CINS_1188 vs: PJ16_07410 in 00-0949 (Campylobacter jejuni subsp. jejuni strain 00-0949, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1773.00 bits: 768.63 e-value: 0.000000
length: 605 gaps: 5 id: 369 positives: 448 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+I+ T L
PJ16_07410 +1367508 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMILQTSSL +1367805

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
PJ16_07410 +1367808 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1368105

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
PJ16_07410 +1368108 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1368405

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA++ES Y H+ TLAYGG +KTH +WL+FK +E+ I + +
PJ16_07410 +1368408 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKQNLEQDIEKIQKYL +1368705

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D F K D + N M NE + +
PJ16_07410 +1368708 DTKVYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEIFIQE +1369005

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
PJ16_07410 +1369008 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1369305

CINS_1188 +636 EKICK +640
E++ +
PJ16_07410 +1369308 ERVRR +1369320

CINS_1188 vs: PJ16_07420 in 00-0949 (Campylobacter jejuni subsp. jejuni strain 00-0949, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: PseD protein

Score: 1673.00 bits: 725.49 e-value: 0.000000
length: 612 gaps: 15 id: 358 positives: 438 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
PJ16_07420 +1371317 DNLDINLKDTSIKNNGGGYSENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1371614

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++TN L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
PJ16_07420 +1371617 MVLNTNKLEIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1371914

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKD++FV S ++P KYL+K ++ S
PJ16_07420 +1371917 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDVLFVCISWIYPQTIKYLQKNNRAFILTS +1372214

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+L GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY+N F D LAYGG V++ IW +F+
PJ16_07420 +1372217 RPSSFIENINLCPYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYKNLDKHEGHFRRDK-GKFQCLAYGGNGKVESSEIWTMFRFS +1372514

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ IS+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
PJ16_07420 +1372517 LQNTISKNIVSTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLN +1372814

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E LN I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
PJ16_07420 +1372817 EKEEYLNLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKE +1373114

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
PJ16_07420 +1373117 RKLDKWMERVRR +1373150

CINS_1188 vs: PJ17_06980 in 00-1597 (Campylobacter jejuni subsp. jejuni strain 00-1597, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: PseD protein

Score: 1736.00 bits: 752.67 e-value: 0.000000
length: 613 gaps: 19 id: 375 positives: 450 coverage: 0.58 query coverage 0.59

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
PJ17_06980 +1346598 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +1346895

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++ + L+ +DY LCS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
PJ17_06980 +1346898 MVLENDKLQAQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1347195

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER ++TAEFFN DFGEFDKDIVFV VVHP A +YL+ K ++
PJ17_06980 +1347198 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFVCAGVVHPKAIEYLKGKT--FIITQ +1347495

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
PJ17_06980 +1347498 KVLAFPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +1347795

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKEL-DSLNKMMNDFL-L +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + N + N +L L
PJ17_06980 +1347798 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFNNIQNIYLNL +1348095

CINS_1188 +536 SANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLI +635
E LN I +D+ K K+EN K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
PJ17_06980 +1348098 NKKENDLNLAIRKIDEFKNKLENIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLK +1348395

CINS_1188 +636 NRGFEKLVEKICK +648
R +K +EK+ +
PJ17_06980 +1348398 ERKLDKWMEKVRR +1348434

CINS_1188 vs: PJ17_07050 in 00-1597 (Campylobacter jejuni subsp. jejuni strain 00-1597, complete genome.)
Gene length: 1950bp / 650aa PV: No
Function: PseD protein

Score: 1714.00 bits: 743.18 e-value: 0.000000
length: 609 gaps: 10 id: 363 positives: 450 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL++++TN
PJ17_07050 +1359617 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLNTNKP +1359914

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
PJ17_07050 +1359917 EIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQDFKDSILSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1360214

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+NIKPDYV LERI +T+EFFNNDFGEFDKDI+FVLKS VHP KYL+K +++S + FIN+
PJ17_07050 +1360217 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHNIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFVLKSYVHPHTTKYLQKNNRNFMLVSTYASFINY +1360514

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLIS-- +435
+ L + GY G SVANM + LA L HKNI+ IGQDLAYA++G SH KDY N F+ D ++ T AYG V++ F+W LF+ E+ ++
PJ17_07050 +1360517 LKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIGQDLAYAKDGLSHTKDYSNLDKHEGHFQRDKNKYT-TQAYGDNGKVESSFVWTLFRHNFEQDVANA +1360814

CINS_1188 +436 -RNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANER +535
+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D F K D + N M NE
PJ17_07050 +1360817 KKNYYITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSNKFIKSYDKIKNSFMSLQNSQENET +1361114

CINS_1188 +536 LLNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGF +635
L+ ++I +DKIK ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
PJ17_07050 +1361117 LIKEIIKDIDKIKTQIDELYNTQKDLMQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKL +1361414

CINS_1188 +636 EKLVEKICK +644
+K +E++ +
PJ17_07050 +1361417 DKWMERVRR +1361441

CINS_1188 vs: PJ17_07060 in 00-1597 (Campylobacter jejuni subsp. jejuni strain 00-1597, complete genome.)
Gene length: 1941bp / 647aa PV: Yes
Function: PseD protein

Score: 1736.00 bits: 752.67 e-value: 0.000000
length: 610 gaps: 15 id: 369 positives: 450 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+IL+FS EL+ ARL
PJ17_07060 +1363435 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILNFSSELQSARL +1363732

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++ + L+ +DY LCS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
PJ17_07060 +1363735 MVLENDKLQAQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1364032

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER ++TAEFFN DFGEFDKDIVFV VVHP A +YL+ + K ++I
PJ17_07060 +1364035 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFVCAGVVHPKAIEYLKGRNRKYLIIP +1364332

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+F +I L+ + Y PSVA MA L+ L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH +W+ FK +E +
PJ17_07060 +1364335 RYLYFPIYIKLKYFDFLYNTPSVAHMACYLSLHLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKKEIKTHEVWIFFKQILEAM +1364632

CINS_1188 +436 ISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKEL-DSLNKMMNDFL-LSAN +535
I + TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + N + N +L L
PJ17_07060 +1364635 IIKY-HITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFNNIQNIYLNLNKK +1364932

CINS_1188 +536 ERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRG +635
E LN I +D+ K K+EN K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
PJ17_07060 +1364935 ENDLNLAIRKIDEFKNKLENIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERK +1365232

CINS_1188 +636 FEKLVEKICK +645
+K +E++ +
PJ17_07060 +1365235 LDKWMERVRR +1365262

CINS_1188 vs: N135_01421 in 00-2425 (Campylobacter jejuni subsp. jejuni 00-2425, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1732.00 bits: 750.94 e-value: 0.000000
length: 605 gaps: 5 id: 360 positives: 442 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL+I+ T L
N135_01421 +1337511 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRLMILQTSSL +1337808

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
N135_01421 +1337811 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1338108

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
N135_01421 +1338111 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERKAITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1338408

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA++ES Y H+ TLAYGG +KTH +WL+FK +E+ + + +
N135_01421 +1338411 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +1338708

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D F K D + N M NE + +
N135_01421 +1338711 DTKIYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEIFIQE +1339008

CINS_1188 +536 MILHVDKIKIKVENF-KTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K +++ T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
N135_01421 +1339011 IIQDIDKTKTQIDELCNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1339308

CINS_1188 +636 EKICK +640
E++ +
N135_01421 +1339311 ERVRR +1339323

CINS_1188 vs: N135_01423 in 00-2425 (Campylobacter jejuni subsp. jejuni 00-2425, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: PseD protein

Score: 1709.00 bits: 741.02 e-value: 0.000000
length: 611 gaps: 15 id: 364 positives: 441 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL
N135_01423 +1341320 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRL +1341617

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY LCS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
N135_01423 +1341620 MILENDKLQAQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1341917

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDI+F+ VVHP A +YL K +V+
N135_01423 +1341920 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIIFICAGVVHPKAIEYL--KDRNLVITQ +1342217

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
N135_01423 +1342220 KVLAFPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +1342517

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
N135_01423 +1342520 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNE +1342817

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
N135_01423 +1342820 KEEDINLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1343117

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
N135_01423 +1343120 KLDKWMERVRR +1343150

CINS_1188 vs: N564_02285 in 00-2426 (Campylobacter jejuni subsp. jejuni 00-2426, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1732.00 bits: 750.94 e-value: 0.000000
length: 605 gaps: 5 id: 360 positives: 442 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL+I+ T L
N564_02285 +1299342 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRLMILQTSSL +1299639

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
N564_02285 +1299642 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1299939

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
N564_02285 +1299942 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERKAITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1300239

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA++ES Y H+ TLAYGG +KTH +WL+FK +E+ + + +
N564_02285 +1300242 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +1300539

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D F K D + N M NE + +
N564_02285 +1300542 DTKIYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEIFIQE +1300839

CINS_1188 +536 MILHVDKIKIKVENF-KTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K +++ T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
N564_02285 +1300842 IIQDIDKTKTQIDELCNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1301139

CINS_1188 +636 EKICK +640
E++ +
N564_02285 +1301142 ERVRR +1301154

CINS_1188 vs: N564_02295 in 00-2426 (Campylobacter jejuni subsp. jejuni 00-2426, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: PseD protein

Score: 1709.00 bits: 741.02 e-value: 0.000000
length: 611 gaps: 15 id: 364 positives: 441 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL
N564_02295 +1303151 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRL +1303448

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY LCS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
N564_02295 +1303451 MILENDKLQAQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1303748

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDI+F+ VVHP A +YL K +V+
N564_02295 +1303751 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIIFICAGVVHPKAIEYL--KDRNLVITQ +1304048

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
N564_02295 +1304051 KVLAFPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +1304348

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
N564_02295 +1304351 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNE +1304648

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
N564_02295 +1304651 KEEDINLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1304948

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
N564_02295 +1304951 KLDKWMERVRR +1304981

CINS_1188 vs: N565_02385 in 00-2538 (Campylobacter jejuni subsp. jejuni 00-2538, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: PseD protein

Score: 1709.00 bits: 741.02 e-value: 0.000000
length: 611 gaps: 15 id: 364 positives: 441 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL
N565_02385 +1341707 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRL +1342004

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY LCS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
N565_02385 +1342007 MILENDKLQAQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1342304

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDI+F+ VVHP A +YL K +V+
N565_02385 +1342307 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIIFICAGVVHPKAIEYL--KDRNLVITQ +1342604

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
N565_02385 +1342607 KVLAFPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +1342904

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
N565_02385 +1342907 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNE +1343204

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
N565_02385 +1343207 KEEDINLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1343504

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
N565_02385 +1343507 KLDKWMERVRR +1343537

CINS_1188 vs: N565_02375 in 00-2538 (Campylobacter jejuni subsp. jejuni 00-2538, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1732.00 bits: 750.94 e-value: 0.000000
length: 605 gaps: 5 id: 360 positives: 442 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL+I+ T L
N565_02375 +1337898 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRLMILQTSSL +1338195

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
N565_02375 +1338198 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1338495

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
N565_02375 +1338498 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERKAITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1338795

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA++ES Y H+ TLAYGG +KTH +WL+FK +E+ + + +
N565_02375 +1338798 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +1339095

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D F K D + N M NE + +
N565_02375 +1339098 DTKIYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEIFIQE +1339395

CINS_1188 +536 MILHVDKIKIKVENF-KTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K +++ T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
N565_02375 +1339398 IIQDIDKTKTQIDELCNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1339695

CINS_1188 +636 EKICK +640
E++ +
N565_02375 +1339698 ERVRR +1339710

CINS_1188 vs: N755_02445 in 00-2544 (Campylobacter jejuni subsp. jejuni 00-2544, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: PseD protein

Score: 1709.00 bits: 741.02 e-value: 0.000000
length: 611 gaps: 15 id: 364 positives: 441 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL
N755_02445 +1341690 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRL +1341987

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY LCS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
N755_02445 +1341990 MILENDKLQAQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1342287

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDI+F+ VVHP A +YL K +V+
N755_02445 +1342290 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIIFICAGVVHPKAIEYL--KDRNLVITQ +1342587

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
N755_02445 +1342590 KVLAFPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +1342887

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
N755_02445 +1342890 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNE +1343187

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
N755_02445 +1343190 KEEDINLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1343487

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
N755_02445 +1343490 KLDKWMERVRR +1343520

CINS_1188 vs: N755_02435 in 00-2544 (Campylobacter jejuni subsp. jejuni 00-2544, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1732.00 bits: 750.94 e-value: 0.000000
length: 605 gaps: 5 id: 360 positives: 442 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL+I+ T L
N755_02435 +1337881 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRLMILQTSSL +1338178

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
N755_02435 +1338181 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1338478

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
N755_02435 +1338481 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERKAITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1338778

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA++ES Y H+ TLAYGG +KTH +WL+FK +E+ + + +
N755_02435 +1338781 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +1339078

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D F K D + N M NE + +
N755_02435 +1339081 DTKIYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEIFIQE +1339378

CINS_1188 +536 MILHVDKIKIKVENF-KTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K +++ T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
N755_02435 +1339381 IIQDIDKTKTQIDELCNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1339678

CINS_1188 +636 EKICK +640
E++ +
N755_02435 +1339681 ERVRR +1339693

CINS_1188 vs: PJ18_06860 in 00-6200 (Campylobacter jejuni subsp. jejuni strain 00-6200, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: PseD protein

Score: 1698.00 bits: 736.27 e-value: 0.000000
length: 611 gaps: 15 id: 366 positives: 444 coverage: 0.56 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
PJ18_06860 +1302652 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1302949

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRKNL
PJ18_06860 +1302952 MILENDKLQTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKNL +1303249

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DF EFD+DIVF+ VVHP A +YL K +V+
PJ18_06860 +1303252 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFREFDRDIVFICAGVVHPKAIEYL--KGRNLVITQ +1303549

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ +I+L++ YA G SVA M LAT LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYG VKTH IW+LFKN E
PJ18_06860 +1303552 KVLGLPYYINLKDFSYAAVGFSVAHMLAYLATYLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTKAYGEKEEVKTHAIWILFKNYFENE +1303849

CINS_1188 +436 ISRNE---NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
I N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
PJ18_06860 +1303852 IIPNTIKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNKILSNDFENIQSIY--LSLNE +1304149

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +D+ K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
PJ18_06860 +1304152 KEEDINLAIEKIDEFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1304449

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
PJ18_06860 +1304452 KLDKWMERVRR +1304482

CINS_1188 vs: PJ18_06850 in 00-6200 (Campylobacter jejuni subsp. jejuni strain 00-6200, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1771.00 bits: 767.76 e-value: 0.000000
length: 605 gaps: 5 id: 370 positives: 452 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL+++ T L
PJ18_06850 +1298843 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQNSRLMVLQTSSL +1299140

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRKNLSDTAIIVS
PJ18_06850 +1299143 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKNLSDTAIIVS +1299440

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DF EFDKDI F++KSVVHPNA YL KK ++S + FIN+
PJ18_06850 +1299443 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFREFDKDICFIIKSVVHPNAINYLTKKTDNFTLVSTYASFINY +1299740

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ L HKNIIFIGQDLAYA+NG+SHP DYQNSAT+ES +E I T AYGG VKTH +WL+FK +E+ I + +
PJ18_06850 +1299743 LKLDHFGYFNMGFSVAHMACYLSLHLKHKNIIFIGQDLAYAKNGNSHPDDYQNSATYESKAHEPILTKAYGGKGEVKTHHVWLMFKQNLEQDIEKIQKYL +1300040

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARI+GAIEKPF CE LL+K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + N M NE + +
PJ18_06850 +1300043 DTKVYNCTEGGARIKGAIEKPFLWACENLLAKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFMSLQNSQKNEIFIQE +1300340

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
PJ18_06850 +1300343 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1300640

CINS_1188 +636 EKICK +640
E++ +
PJ18_06850 +1300643 ERVRR +1300655

CINS_1188 vs: PJ18_06785 in 00-6200 (Campylobacter jejuni subsp. jejuni strain 00-6200, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: PseD protein

Score: 1651.00 bits: 716.00 e-value: 0.000000
length: 612 gaps: 15 id: 353 positives: 439 coverage: 0.54 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
PJ18_06785 +1284921 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1285218

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRKNL
PJ18_06785 +1285221 MILENDKLQTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKNL +1285518

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYV LERI +T+EFFN DFGEFD+D++FV S V+P KYL+K ++IS
PJ18_06785 +1285521 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNHDFGEFDRDVLFVCVSWVYPQTIKYLQKNNRNFMLIS +1285818

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+ + GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY N F+ D LAYGG V++ IW +F+
PJ18_06785 +1285821 RPSDFIKNINFHQYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1286118

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ ISRN TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
PJ18_06785 +1286121 LQNTISRNIISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNKILSNDFENIQSIY--LSLN +1286418

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E +N I +D+ K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
PJ18_06785 +1286421 EKEEDINLAIEKIDEFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKE +1286718

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
PJ18_06785 +1286721 RKLDKWMERVRR +1286754

CINS_1188 vs: PJ19_07340 in 01-1512 (Campylobacter jejuni subsp. jejuni strain 01-1512, complete genome.)
Gene length: 1941bp / 647aa PV: Yes
Function: PseD protein

Score: 1746.00 bits: 756.98 e-value: 0.000000
length: 610 gaps: 15 id: 370 positives: 451 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
PJ19_07340 +1353104 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQNARL +1353401

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++TN L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
PJ19_07340 +1353404 IVLNTNKLEIQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1353701

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER ++TAEFFN DFGEFDKDIVF+ VVHP A +YL+ + K ++I
PJ19_07340 +1353704 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFICAGVVHPKAIEYLKGRNRKYLIIP +1354001

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+F +I L+ + Y PSVA M+Y L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH W+ FK +E +
PJ19_07340 +1354004 RYLYFPIYIKLKYFDFLYNTPSVAHMSYFLSVLLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKKEIKTHEFWIFFKQILEAM +1354301

CINS_1188 +436 ISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER +535
I + TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + + LS NE+
PJ19_07340 +1354304 IIKY-HITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFEKIQSIYLSLNEK +1354601

CINS_1188 +536 --LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRG +635
LN I +D K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
PJ19_07340 +1354604 EEYLNLAIEKIDGFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERK +1354901

CINS_1188 +636 FEKLVEKICK +645
+K +E++ +
PJ19_07340 +1354904 LDKWMERVRR +1354931

CINS_1188 vs: PJ19_07420 in 01-1512 (Campylobacter jejuni subsp. jejuni strain 01-1512, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: PseD protein

Score: 1673.00 bits: 725.49 e-value: 0.000000
length: 612 gaps: 15 id: 358 positives: 438 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
PJ19_07420 +1369928 DNLDINLKDTSIKNNGGGYSENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1370225

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++TN L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
PJ19_07420 +1370228 MVLNTNKLEIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1370525

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKD++FV S ++P KYL+K ++ S
PJ19_07420 +1370528 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDVLFVCISWIYPQTIKYLQKNNRAFILTS +1370825

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+L GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY+N F D LAYGG V++ IW +F+
PJ19_07420 +1370828 RPSSFIENINLCPYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYKNLDKHEGHFRRDK-GKFQCLAYGGNGKVESSEIWTMFRFS +1371125

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ IS+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
PJ19_07420 +1371128 LQNTISKNIVSTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLN +1371425

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E LN I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
PJ19_07420 +1371428 EKEEYLNLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKE +1371725

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
PJ19_07420 +1371728 RKLDKWMERVRR +1371761

CINS_1188 vs: PJ19_07410 in 01-1512 (Campylobacter jejuni subsp. jejuni strain 01-1512, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1773.00 bits: 768.63 e-value: 0.000000
length: 605 gaps: 5 id: 369 positives: 448 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+I+ T L
PJ19_07410 +1366119 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMILQTSSL +1366416

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
PJ19_07410 +1366419 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1366716

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
PJ19_07410 +1366719 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1367016

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA++ES Y H+ TLAYGG +KTH +WL+FK +E+ I + +
PJ19_07410 +1367019 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKQNLEQDIEKIQKYL +1367316

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D F K D + N M NE + +
PJ19_07410 +1367319 DTKVYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEIFIQE +1367616

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
PJ19_07410 +1367619 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1367916

CINS_1188 +636 EKICK +640
E++ +
PJ19_07410 +1367919 ERVRR +1367931

CINS_1188 vs: JJD26997_0374 in 269.97 (Campylobacter jejuni subsp. doylei 269.97, complete genome.)
Gene length: 1950bp / 650aa PV: Yes
Function: motility accessory factor

Score: 1619.00 bits: 702.20 e-value: 0.000000
length: 612 gaps: 16 id: 350 positives: 436 coverage: 0.54 query coverage 0.55

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
D LDINL +T L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL
JJ..7_0374 +331719 DKLDINLKDTSIKNNGGGYSENLLYQDPIKELQTMLNTYSDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQNARL +332016

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL++N L +FK I HGN D LQGIEQFVYN+PSMI+ PSY+ELL KRK L
JJ..7_0374 +331419 MILENDKLQTQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDVLKINHKLAETFKKVILMHGNDSTDALQGIEQFVYNLPSMITHPSYEELLAKRKHL +331716

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKAT+FCADSAYPILAK I+PDYV LER+ T+EFFNNDF EFDKDI+FVLKS HP KYL+K +++S
JJ..7_0374 +331119 SDTAIIVSTGPSLTKQLPLLKKYASKATLFCADSAYPILAKQGIRPDYVLSLERVLETSEFFNNDFKEFDKDILFVLKSYAHPHTTKYLQKNNRNFMLVS +331416

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHID----TLAYGGGYMVKTHFIWLLFKNE +435
+ FIN++ L + GY G SVANMAY LA L +KNII IGQDLAY+++G SHP D + T + + E I T AYGG +V T+ +W LF+
JJ..7_0374 +330819 TYANFINYLKLDDFGYFTMGFSVANMAYHLALLLQYKNIILIGQDLAYSKDGSSHP-DEHIFGTLDGEKKETISYDLQTTAYGGEGLVYTQEVWNLFRSI +331116

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
E+ I+ N TYNCTEGGARIEGAIEKPF CE LL+K+L KPF KL+ L + KQNE LLKAY K+ QSIK C D K + + + + L
JJ..7_0374 +330519 FEQDIT-NYHIPTYNCTEGGARIEGAIEKPFLWACENLLAKDLNKPFEKLEPLSLKKQNEFLLKAYYKVCQSIKHCRDFSKILSNDFENIQSIY--LSLN +330816

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E LN I +D+ K K+E+ K M DLYEILGP + QFELNLARIYVLNPKTKED FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
JJ..7_0374 +330219 EKEEYLNLAIRKIDEFKNKLEDIKQMQDLYEILGPLLTQFELNLARIYVLNPKTKEDVFNKSILWIKEHLEFMELVYGHIKAQESALIKNILPLEEKLKE +330516

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
JJ..7_0374 +329919 RKLDKGMERVRR +329952

CINS_1188 vs: JJD26997_0376 in 269.97 (Campylobacter jejuni subsp. doylei 269.97, complete genome.)
Gene length: 1944bp / 648aa PV: No
Function: motility accessory factor

Score: 1729.00 bits: 749.65 e-value: 0.000000
length: 608 gaps: 11 id: 373 positives: 451 coverage: 0.58 query coverage 0.59

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
D LDINL NT DNT ++EN + ELN+MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL+I+ T L
JJ..7_0376 +335522 DKLDINLKNTSDNTFLHENVINELNSMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQNARLMILQTSSL +335819

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN P+D LQGIEQFVYN+PSMI+ PSYKELL KRK LSDTAIIVS
JJ..7_0376 +335222 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSILSHGNDPLDALQGIEQFVYNLPSMITHPSYKELLAKRKHLSDTAIIVS +335519

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSLIKQLPLLK+Y+ KATIFCADSAYPILAK+NIKPDYVCMLER + TAEFFN DFGEFDKDI F++KSVVHPNA YL KK ++S + FIN+
JJ..7_0376 +334922 TGPSLIKQLPLLKKYANKATIFCADSAYPILAKHNIKPDYVCMLERSEFTAEFFNHDFGEFDKDICFIIKSVVHPNAIHYLNKKTDDFTLVSTYASFINY +335219

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L + GY G SVA MA L+ L HKNIIFIGQDLAYA+NG+SHP DYQNSAT+ES +E I T AYGG VKTH IWL+FK +E+ + + +
JJ..7_0376 +334622 VKLDDFGYFNMGFSVAHMACYLSLHLKHKNIIFIGQDLAYAKNGNSHPDDYQNSATYESKAHEPILTKAYGGKGEVKTHHIWLMFKQNLEQDVEKIQKYL +334919

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFL----LSANERL +535
+ YNCTEGGARIEGAIEKPF CE LL K+L KPF KL+ L + KQNE LLKAY K+ +SI+ C D F K S K+ N F+ NE L
JJ..7_0376 +334322 DTKVYNCTEGGARIEGAIEKPFLWACENLLGKDLNKPFEKLEPLSLKKQNEFLLKAYYKVCKSIEHCRDFNDKFIK---SYKKIKNSFMSLQNSQENEIL +334619

CINS_1188 +536 LNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFE +635
+ +I +DKIK ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
JJ..7_0376 +334022 VKKIIKNIDKIKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDVFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLN +334319

CINS_1188 +636 KLVEKICK +643
K +E++ +
JJ..7_0376 +333722 KWMERVRR +333743

CINS_1188 vs: JJD26997_0396 in 269.97 (Campylobacter jejuni subsp. doylei 269.97, complete genome.)
Gene length: 1933bp / 644aa PV: Yes
Function: No annotation data

Score: 1689.00 bits: 732.39 e-value: 0.000000
length: 588 gaps: 9 id: 357 positives: 437 coverage: 0.55 query coverage 0.56

CINS_1188 +50 LMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPM +149
L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL+I++ + L+ +DY+ LCS P
JJ..7_0396 +352297 LLYQDPIKELQTMLNTYSDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQNARLMILENDKLQTQDYNELCSSKPF +352594

CINS_1188 +150 FNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQ +249
F FSR YFLEL S YYE++++DVL++N L FK I HGN D LQGIEQFVYN+PSMI+ PSY+ELL KRK LSDTAIIVSTGPSL KQLPLLK+
JJ..7_0396 +351997 FQFSRIYFLELMSHYYERFHEDVLKINHKLAENFKKVILMHGNDSTDALQGIEQFVYNLPSMITHPSYEELLAKRKHLSDTAIIVSTGPSLTKQLPLLKK +352294

CINS_1188 +250 YSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPS +349
Y+SKAT+FCADSAYPILAK I+PDYVCMLER D TAEFFN DFGEFD+DIVF+ VVHP A +YL K +V+ + F +I+L++ YA G S
JJ..7_0396 +351697 YASKATLFCADSAYPILAKQGIRPDYVCMLERTDFTAEFFNHDFGEFDRDIVFICAGVVHPKAIEYL--KGRNLVITQKVLTFPYYINLKDFSYAAVGFS +351994

CINS_1188 +350 VANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNENCATYNCTEGGARIEGA +449
VA M+Y L+ LNHKNII IGQDLAYA+NG+SHP DYQNSAT+ES TYE I T AYGG VKTH +W+ FK +E +I TYNCTEGGARIEG
JJ..7_0396 +351397 VAHMSYFLSVLLNHKNIILIGQDLAYAKNGNSHPDDYQNSATYESQTYEPILTKAYGGKGEVKTHEVWIFFKQMLETMIIEY-SIPTYNCTEGGARIEGT +351694

CINS_1188 +450 IEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER--LLNDMILHVDKIKIKVENFK +549
IEKPF CE LL+K+L KPF KL+ L + KQNE LLKAY K+ +SI+ C KDF K L + + LS NE+ LN I +D+ K K+E+ K
JJ..7_0396 +351097 IEKPFLWACENLLAKDLNKPFEKLEPLSLKKQNEFLLKAYYKVCKSIEHC----KDFSKILSNDFENIQSIYLSLNEKEEYLNLAIRKIDEFKNKLEDIK +351394

CINS_1188 +550 TMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +637
M DLYEILGP + QFELNLARIYVLNPKTKED FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
JJ..7_0396 +350797 QMQDLYEILGPLLTQFELNLARIYVLNPKTKEDVFNKSILWIKEHLEFMELVYGHIKAQESALIKNILPLEEKLKERKLDKGMERVRR +351058

CINS_1188 vs: BN867_13180 in 4031 (Campylobacter jejuni 4031 genome sequence.)
Gene length: 1974bp / 658aa PV: Yes
Function: Motility accessory factor

Score: 1632.00 bits: 707.80 e-value: 0.000000
length: 620 gaps: 24 id: 354 positives: 439 coverage: 0.54 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
BN.._13180 +1296106 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +1296403

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++T L + CS P F FSR YFLEL S YYE+++ D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK++
BN.._13180 +1296406 MVLETSSLDIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHKDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKDI +1296703

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKDI+FVLKS VHP KYL+K +++S
BN.._13180 +1296706 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFVLKSYVHPHTTKYLQKNNRNFMLVS +1297003

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
+ FIN++ L + GY G SVANM + LA L HKNI+ IGQDLAY ++G SH KDY N F+ D ++ T AYGG V++ IW LF+
BN.._13180 +1297006 TYASFINYLKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIGQDLAYTKDGLSHTKDYSNLDKHEGHFQRDKNKYT-TQAYGGNGKVQSSEIWTLFRHN +1297303

CINS_1188 +436 MEK---LISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDF +535
EK I N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K NK+ N F
BN.._13180 +1297306 FEKDIVNIKMNYHITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIK---VYNKIKNSF +1297603

CINS_1188 +536 L----LSANERLLNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIK +635
+ NE + ++I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI
BN.._13180 +1297606 MSLQNSQKNEIFIQEIIQDIDKTKTQIDELYNTQKDLMQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNIL +1297903

CINS_1188 +636 QLECVLINRGFEKLVEKICK +655
LE + R +K +E++ +
BN.._13180 +1297906 PLEEKIKERKLDKWMERVRR +1297963

CINS_1188 vs: BN867_13200 in 4031 (Campylobacter jejuni 4031 genome sequence.)
Gene length: 1947bp / 649aa PV: Yes
Function: Motility accessory factor

Score: 1725.00 bits: 747.92 e-value: 0.000000
length: 613 gaps: 19 id: 373 positives: 448 coverage: 0.57 query coverage 0.59

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
BN.._13200 +1299948 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +1300245

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++T L + CS P F FSR YFLEL S YYE+++ D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK++
BN.._13200 +1300248 MVLETSSLDIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHKDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKDI +1300545

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDI+FV VVHP A +YL K +V+
BN.._13200 +1300548 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIIFVCAGVVHPKAIEYL--KGRNLVITQ +1300845

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT LNHKNIIFIGQDLAYAENG+SHP DYQNSAT+ES YEHI T AYGG V+TH IWLLFKN E
BN.._13200 +1300848 KVLAFPYYINLKDFSYAAVGLSVAHTLSYLATYLNHKNIIFIGQDLAYAENGNSHPDDYQNSATYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +1301145

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKEL-DSLNKMMNDFL-L +535
+ +R + TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + N + N +L L
BN.._13200 +1301148 MIPNTRKMDITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFNNIQNIYLNL +1301445

CINS_1188 +536 SANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLI +635
E LN I +D+ K K+EN K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE +
BN.._13200 +1301448 NKKENDLNLAIRKIDEFKNKLENIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKIK +1301745

CINS_1188 +636 NRGFEKLVEKICK +648
R +K +E++ +
BN.._13200 +1301748 ERKLDKWMERVRR +1301784

CINS_1188 vs: M635_02360 in 32488 (Campylobacter jejuni 32488, complete sequence.)
Gene length: 1950bp / 650aa PV: No
Function: PseD protein

Score: 1705.00 bits: 739.29 e-value: 0.000000
length: 609 gaps: 10 id: 361 positives: 448 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL+I++TN
M635_02360 +444860 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQSARLMILNTNKP +445157

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
M635_02360 +445160 EIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQDFKDSILSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +445457

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+NIKPDYV LERI +T+EFFNNDFGEFDKDIVFVLKS VHP KYL+K +++S + FIN+
M635_02360 +445460 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHNIKPDYVLSLERIPLTSEFFNNDFGEFDKDIVFVLKSYVHPHTTKYLQKNNRNFMLVSTYASFINY +445757

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLIS-- +435
+ L + GY G SVANM + LA L HKNI+ IGQDLAYA++G SH KDY N F+ D ++ T AYG V++ F+W LF+ E+ ++
M635_02360 +445760 LKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIGQDLAYAKDGLSHTKDYSNLDKHEGHFQRDKNKYT-TQAYGDNGKVESSFVWTLFRHNFEQDVANA +446057

CINS_1188 +436 -RNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANER +535
+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D F K D + N M NE
M635_02360 +446060 KKNYYITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSNKFIKSYDKIKNSFMSLQNSQKNEI +446357

CINS_1188 +536 LLNDMILHVDKIKIKVENF-KTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGF +635
+ ++I +DK K +++ T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
M635_02360 +446360 FIQEIIQDIDKTKTQIDELCNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKL +446657

CINS_1188 +636 EKLVEKICK +644
+K +E++ +
M635_02360 +446660 DKWMERVRR +446684

CINS_1188 vs: M635_02285 in 32488 (Campylobacter jejuni 32488, complete sequence.)
Gene length: 1776bp / 592aa PV: Yes
Function: PseD protein

Score: 1730.00 bits: 750.08 e-value: 0.000000
length: 586 gaps: 3 id: 357 positives: 436 coverage: 0.60 query coverage 0.56

CINS_1188 +50 LMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPM +149
L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL++++TN L+ +DY+ LCS P
M635_02285 +431910 LLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQSARLMVLNTNKLEIQDYNELCSSKPF +432207

CINS_1188 +150 FNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQ +249
F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVSTGPSL KQLPLLK+
M635_02285 +432210 FQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKK +432507

CINS_1188 +250 YSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPS +349
Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKD++FV VVHP A +YL+ + K ++ +F +I L+ + Y PS
M635_02285 +432510 YANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDVLFVCAGVVHPKAIEYLKGRNRKYLITPRYLYFPIYIKLKYFDFLYNTPS +432807

CINS_1188 +350 VANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNENCATYNCTEGGARIEGA +449
VA M+Y L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +E YEHI T AYGG +KTH +W+ FK +E +I + TYNCTEGGARIEG
M635_02285 +432810 VAHMSYFLSVLLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYENQMYEHILTEAYGGKKEIKTHEVWIFFKQILEAMIIKY-HITTYNCTEGGARIEGT +433107

CINS_1188 +450 IEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLNDMILHVDKIKIKVENFKTM +549
IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L E LN I +DK K K+E+ K M
M635_02285 +433110 IEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNEKEEYLNLAIEKIDKFKNKLEDIKQM +433407

CINS_1188 +550 NDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +635
DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
M635_02285 +433410 QDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRR +433665

CINS_1188 vs: M635_02370 in 32488 (Campylobacter jejuni 32488, complete sequence.)
Gene length: 1923bp / 641aa PV: No
Function: PseD protein

Score: 1680.00 bits: 728.51 e-value: 0.000000
length: 606 gaps: 13 id: 363 positives: 443 coverage: 0.57 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL+I++T L
M635_02370 +448678 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSSELQSARLMILNTSSL +448975

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
M635_02370 +448978 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +449275

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+NIKPDYV LERI +T+EFFNNDFGEFDKDIVFV VVHP +YL+ K ++ + F +
M635_02370 +449278 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHNIKPDYVLSLERIPLTSEFFNNDFGEFDKDIVFVCAGVVHPKTIEYLKNKT--FIITQKILAFPYY +449575

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
I+L+N YA G SVA MAY+ AT LN+KNIIFIGQDLAYAE+G SH KDY N F+ D LAYGG ++ +W +F+ ++ ISRN
M635_02370 +449578 INLKNFCYAAIGFSVAHMAYEFATHLNYKNIIFIGQDLAYAEDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKAESSEVWTMFRFFLQDTISRN +449875

CINS_1188 +436 ENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKEL-DSLNKMMNDFL-LSANERLL +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + N + N +L L E L
M635_02370 +449878 IISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFNNIQNIYLNLNKKENDL +450175

CINS_1188 +536 NDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKL +635
N I +D+ K K+EN K M DLYEIL ++QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K
M635_02370 +450178 NLAIRKIDEFKNKLENIKQMQDLYEILSTLLIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKW +450475

CINS_1188 +636 VEKICK +641
+E++ +
M635_02370 +450478 MERVRR +450493

CINS_1188 vs: UC78_1278 in 35925B2 (Campylobacter jejuni subsp. jejuni strain 35925B2, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: hypothetical protein

Score: 1633.00 bits: 708.24 e-value: 0.000000
length: 612 gaps: 15 id: 349 positives: 432 coverage: 0.54 query coverage 0.55

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
UC78_1278 +1249267 DNLDINLKDTSIKNNGGGYNEDLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +1249564

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++T L + CS P F FSR YFLEL SNYYE++++D+L +N L +FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
UC78_1278 +1249567 MVLETSSLDIEFFSNFCSSKPFFQFSRIYFLELMSNYYERFHEDILGLNKKLAETFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1249864

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK++IKPDYV LERI +T+EFFNNDFGEFDK+++FV S V+P KYL+K ++IS
UC78_1278 +1249867 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHDIKPDYVLSLERIPLTSEFFNNDFGEFDKNVLFVCVSWVYPQTIKYLQKNNRNFMLIS +1250164

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+ + GY GPSVA MAY+ +T L KNIIFIGQDLAYA++G SH KDY N F+ D LAYGG V++ IW +F+
UC78_1278 +1250167 RPSDFIKNINFHQYGYVGYGPSVAHMAYEFSTHLSCKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1250464

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ ISRN TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
UC78_1278 +1250467 LQNTISRNIISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLN +1250764

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E +N I +DK K K+E+ K M DLYEILGP + QFELNLARIYVLNPKTKED FNK +LWIKEHLE ++L+ HI AQ+ LIKNI LE L
UC78_1278 +1250767 EKEEDINLAIEKIDKFKNKLEDIKQMQDLYEILGPLLTQFELNLARIYVLNPKTKEDVFNKNILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKE +1251064

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
UC78_1278 +1251067 RKLDKWMERVRR +1251100

CINS_1188 vs: UC78_1267 in 35925B2 (Campylobacter jejuni subsp. jejuni strain 35925B2, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: hypothetical protein

Score: 1716.00 bits: 744.04 e-value: 0.000000
length: 611 gaps: 13 id: 359 positives: 442 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
UC78_1267 +1235070 DNLDINLKDTSIKNNGGGYNEDLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +1235367

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++T L + CS P F FSR YFLEL SNYYE++++D+L +N L +FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
UC78_1267 +1235370 MVLETSSLDIEFFSNFCSSKPFFQFSRIYFLELMSNYYERFHEDILGLNKKLAETFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1235667

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK++IKPDYVCMLER ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S
UC78_1267 +1235670 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHDIKPDYVCMLERKAITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVS +1235967

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ FI ++ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA++ES Y H+ TLAYGG +KTH +WL+FK +E+
UC78_1267 +1235970 TYASFIQYLKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSASYESRRYPHLYTLAYGGKEKIKTHHVWLMFKRNLEQD +1236267

CINS_1188 +436 ISRNE---NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ + + + YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
UC78_1267 +1236270 VQKIQKYLDAKIYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNE +1236567

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +DK K K+E+ K M DLYEILGP + QFELNLARIYVLNPKTKED FNK +LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
UC78_1267 +1236570 KEEDINLAIEKIDKFKNKLEDIKQMQDLYEILGPLLTQFELNLARIYVLNPKTKEDVFNKNILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1236867

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
UC78_1267 +1236870 KLDKWMERVRR +1236900

CINS_1188 vs: UC78_1276 in 35925B2 (Campylobacter jejuni subsp. jejuni strain 35925B2, complete genome.)
Gene length: 1968bp / 656aa PV: Yes
Function: hypothetical protein

Score: 1618.00 bits: 701.77 e-value: 0.000000
length: 614 gaps: 15 id: 348 positives: 435 coverage: 0.53 query coverage 0.55

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
UC78_1276 +1245434 DNLDINLKDTSIKNNGGGYNEDLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +1245731

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++T L + CS P F FSR YFLEL SNYYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
UC78_1276 +1245734 MVLETSSLDIEFFSNFCSSKPFFQFSRIYFLELMSNYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1246031

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK++IKPDYV LERI +T+EFFNNDFGEFDK+++FV S V+P KYL+K ++IS
UC78_1276 +1246034 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHDIKPDYVLSLERIPLTSEFFNNDFGEFDKNVLFVCVSWVYPQTIKYLQKNNRNFMLIS +1246331

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+ + GY GPSVA MAY+ +T L KNIIFIGQDLAYA++G SH KDY N F+ D LAYGG V++ IW +F+
UC78_1276 +1246334 RPSDFIKNINFHQYGYVGYGPSVAHMAYEFSTHLSCKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1246631

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLL +535
++ ISRN TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D +F K D + N M
UC78_1276 +1246634 LQNTISRNIISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFNDNFIKVYDKIKNSFMSLQNS +1246931

CINS_1188 +536 SANERLLNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVL +635
NE + ++I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED FNK +LWIKEHLE ++L+ HI AQ+ LIKNI LE L
UC78_1276 +1246934 QKNEIFIQEIIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDVFNKNILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKL +1247231

CINS_1188 +636 INRGFEKLVEKICK +649
R +K +E++ +
UC78_1276 +1247234 KERKLDKWMERVRR +1247273

CINS_1188 vs: C8J_1253 in 81116; NCTC 11828 (Campylobacter jejuni subsp. jejuni 81116, complete genome.)
Gene length: 1965bp / 655aa PV: No
Function: hypothetical protein

Score: 1457.00 bits: 632.32 e-value: 0.000000
length: 609 gaps: 12 id: 331 positives: 425 coverage: 0.51 query coverage 0.52

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
D LDINL NT DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL++ L+II+TN L
C8J_1253 +1261960 DILDINLQNTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWTMFHILDFSNELQKNNLIIINTNIL +1262257

CINS_1188 +136 KRRDY--DYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAII +235
D Y +N FSR YFLEL SNYYE+Y +++L++N+ +L + K SI +GN ID L GI++F+YN+ +++ P + L KR LSDTAII
C8J_1253 +1262260 SEFDLLNFYKKANSIFLQFSRIYFLELISNYYERYNEEILKLNDTILSTIKISIIQYGNDSIDNLMGIKHFIYNLSKLLTHPHSEIFLKKRYKLSDTAII +1262557

CINS_1188 +236 VSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFI +335
VSTGPSL KQLPLLKQY+ KATIFCADSAYPILAK+NIKPDYVCMLER DI ++ F+NDF EFDK I+F+L SVVH ++LE+ + +++ F
C8J_1253 +1262560 VSTGPSLTKQLPLLKQYANKATIFCADSAYPILAKHNIKPDYVCMLERDDIVSKCFDNDFKEFDKGILFILASVVHKEVIEFLERNNREYMLVPRAYDFF +1262857

CINS_1188 +336 NFIDLQNLGYAYSG-PSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDY----QNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI +435
+++L G SVA M Y LA L HKNIIFIGQDLAY+++ SH KD+ F+ D ++AYGG V++ + W LF+ EK I
C8J_1253 +1262860 YYLNLAKYFQPIDGMVSVAHMNYWLAKFLSHKNIIFIGQDLAYSKDQSSHAKDFIHEKLHEGHFQKDE-NLFTSIAYGGKGEVESSYFWKLFREIFEKWI +1263157

CINS_1188 +436 SRNEN-CATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKM---MNDFLLSA +535
S + N YNCTEGGARI+G IEKPF CE LL K+L KPF KL+ LNINKQNEL+LKAY KI +SI C D K +E + + ++ + + +
C8J_1253 +1263160 SHDNNFINIYNCTEGGARIKGTIEKPFLWACENLLGKDLNKPFPKLNPLNINKQNELMLKAYNKIYKSIYHCKDFNKKLLQEYNEIKELYLTLENLQIEE +1263457

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
+ LLN +I +D IK ++++ K M DLYEILGP +VQFELNLARIYVLNPKT EDSFNKS++WIKEHLEWI++I HI AQ+ L +NI LE L R
C8J_1253 +1263460 SKELLNFIIQKIDTIKYQIDDAKNMQDLYEILGPLLVQFELNLARIYVLNPKTPEDSFNKSLIWIKEHLEWIEMIYGHIQAQENALFENIIPLEQKLKER +1263757

CINS_1188 +636 GFEKLVEKI +644
+K + +I
C8J_1253 +1263760 KMQKYLRRI +1263784

CINS_1188 vs: CJ8421_06665 in CG8421 (Campylobacter jejuni subsp. jejuni CG8421, complete genome.)
Gene length: 1938bp / 646aa PV: No
Function: motility accessory factor

Score: 1628.00 bits: 706.08 e-value: 0.000000
length: 609 gaps: 14 id: 362 positives: 444 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLY YGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL++++TN L
CJ.._06665 +1261634 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYLYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLNTNKL +1261931

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
CJ.._06665 +1261934 EIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1262231

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKDI+F++KSV HP KYL+K +++S + FI +
CJ.._06665 +1262234 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDIMFIVKSVTHPHTIKYLQKNNRAFILVSTYASFIQY +1262531

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
+ L GY G SVANM+Y L LN+KNII IGQDLAYA++G SH KDY+N F+ D LAYGG V++ IW +F+ E I
CJ.._06665 +1262534 LKLDYFGYFNMGKSVANMSYLLTEYLNYKNIILIGQDLAYAKDGFSHTKDYKNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSEIWTMFRLIFENDINYF +1262831

CINS_1188 +436 E---NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERL +535
+ N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C +DF K L K + LS NE+
CJ.._06665 +1262834 QKLFNITTYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHC----RDFSKILSNDFKKIQSIYLSLNEKE +1263131

CINS_1188 +536 --LNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGF +635
+N I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
CJ.._06665 +1263134 EDINLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKL +1263431

CINS_1188 +636 EKLVEKICK +644
+K +E++ +
CJ.._06665 +1263434 DKWMERVRR +1263458

CINS_1188 vs: RC25_06245 in CJ677CC519 (Campylobacter jejuni strain CJ677CC519, complete genome.)
Gene length: 1965bp / 655aa PV: No
Function: PseD protein

Score: 1457.00 bits: 632.32 e-value: 0.000000
length: 609 gaps: 12 id: 333 positives: 426 coverage: 0.51 query coverage 0.52

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL NT DNT +Y N ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL++ L+II+TN L
RC25_06245 +1195470 DNLDINLKNTNDNTFLYGNVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVMFHILDFSNELQKNNLIIINTNIL +1195767

CINS_1188 +136 KRRDYD--YLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAII +235
D Y +N FSR YFLEL SNYYE+Y +++L++NN +L + K SI +GN ID L GI++F+YN+ +++ P + L KR LSDTAII
RC25_06245 +1195770 SEFDLSNFYKKANSIFLQFSRIYFLELISNYYERYNEEILKLNNTILSTIKISIIQYGNDSIDNLMGIKHFIYNLSKLLTHPYSEIFLKKRYKLSDTAII +1196067

CINS_1188 +236 VSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFI +335
VSTGPSL KQLPLLKQY+ KATIFCADSAYPILAK+NIKPDYVCMLER DI ++ F+NDF EFDK I+F+L SVVH ++LE+ + +++ F
RC25_06245 +1196070 VSTGPSLTKQLPLLKQYANKATIFCADSAYPILAKHNIKPDYVCMLERDDIVSKCFDNDFKEFDKGILFILASVVHKEVIEFLERNNREYMLVPRAYDFF +1196367

CINS_1188 +336 NFIDLQNLGYAYSG-PSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDY----QNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI +435
+++L G SVA M Y LA L HKNIIFIGQDLAY+++ SH KD+ F+ D T AYGG V++ + W LF+ E I
RC25_06245 +1196370 YYLNLAKYFQPIDGMVSVAHMNYWLAKFLSHKNIIFIGQDLAYSKDQSSHAKDFIHEKLHEGHFQKDENLFTST-AYGGKDKVESSYFWNLFRELFETWI +1196667

CINS_1188 +436 SRNEN-CATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKM---MNDFLLSA +535
S ++N YNCTEGGARIEG IEKPF CE LLSK+L KPF KL+ LNINKQNEL+LK Y KI +SI C D K +E + + ++ + + +
RC25_06245 +1196670 SYDKNFINIYNCTEGGARIEGTIEKPFLWACENLLSKDLNKPFPKLNPLNINKQNELMLKTYNKIYKSIYHCKDFNKKLLQEYNEIKELYLTLENLQIEE +1196967

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
+ LLN +I +D +K ++++ K M DLYEILGP +VQFELNLARIYVLNPKT EDSFNKS++WIKEHLEWI++I HI AQ+ L +NI LE L R
RC25_06245 +1196970 SKELLNFIIQKIDIVKYQIDDAKNMQDLYEILGPLLVQFELNLARIYVLNPKTLEDSFNKSLIWIKEHLEWIEMIYGHIQAQENALFENIIPLEQKLEER +1197267

CINS_1188 +636 GFEKLVEKI +644
+K +E+I
RC25_06245 +1197270 KMQKYLERI +1197294

CINS_1188 vs: CJM1cam_1292 in CJM1cam (Campylobacter jejuni strain CJM1cam, complete genome.)
Gene length: 1965bp / 655aa PV: No
Function: Motility accessory factor Maf-3/PseD

Score: 1457.00 bits: 632.32 e-value: 0.000000
length: 609 gaps: 12 id: 331 positives: 425 coverage: 0.51 query coverage 0.52

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
D LDINL NT DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL++ L+II+TN L
CJ..m_1292 +1256260 DILDINLQNTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWTMFHILDFSNELQKNNLIIINTNIL +1256557

CINS_1188 +136 KRRDY--DYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAII +235
D Y +N FSR YFLEL SNYYE+Y +++L++N+ +L + K SI +GN ID L GI++F+YN+ +++ P + L KR LSDTAII
CJ..m_1292 +1256560 SEFDLLNFYKKANSIFLQFSRIYFLELISNYYERYNEEILKLNDTILSTIKISIIQYGNDSIDNLMGIKHFIYNLSKLLTHPHSEIFLKKRYKLSDTAII +1256857

CINS_1188 +236 VSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFI +335
VSTGPSL KQLPLLKQY+ KATIFCADSAYPILAK+NIKPDYVCMLER DI ++ F+NDF EFDK I+F+L SVVH ++LE+ + +++ F
CJ..m_1292 +1256860 VSTGPSLTKQLPLLKQYANKATIFCADSAYPILAKHNIKPDYVCMLERDDIVSKCFDNDFKEFDKGILFILASVVHKEVIEFLERNNREYMLVPRAYDFF +1257157

CINS_1188 +336 NFIDLQNLGYAYSG-PSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDY----QNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI +435
+++L G SVA M Y LA L HKNIIFIGQDLAY+++ SH KD+ F+ D ++AYGG V++ + W LF+ EK I
CJ..m_1292 +1257160 YYLNLAKYFQPIDGMVSVAHMNYWLAKFLSHKNIIFIGQDLAYSKDQSSHAKDFIHEKLHEGHFQKDE-NLFTSIAYGGKGEVESSYFWKLFREIFEKWI +1257457

CINS_1188 +436 SRNEN-CATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKM---MNDFLLSA +535
S + N YNCTEGGARI+G IEKPF CE LL K+L KPF KL+ LNINKQNEL+LKAY KI +SI C D K +E + + ++ + + +
CJ..m_1292 +1257460 SHDNNFINIYNCTEGGARIKGTIEKPFLWACENLLGKDLNKPFPKLNPLNINKQNELMLKAYNKIYKSIYHCKDFNKKLLQEYNEIKELYLTLENLQIEE +1257757

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
+ LLN +I +D IK ++++ K M DLYEILGP +VQFELNLARIYVLNPKT EDSFNKS++WIKEHLEWI++I HI AQ+ L +NI LE L R
CJ..m_1292 +1257760 SKELLNFIIQKIDTIKYQIDDAKNMQDLYEILGPLLVQFELNLARIYVLNPKTPEDSFNKSLIWIKEHLEWIEMIYGHIQAQENALFENIIPLEQKLKER +1258057

CINS_1188 +636 GFEKLVEKI +644
+K + +I
CJ..m_1292 +1258060 KMQKYLRRI +1258084

CINS_1188 vs: CJH_06700 in F38011 (Campylobacter jejuni subsp. jejuni F38011, complete genome.)
Gene length: 1962bp / 654aa PV: Yes
Function: PseD protein

Score: 1554.00 bits: 674.16 e-value: 0.000000
length: 613 gaps: 20 id: 343 positives: 442 coverage: 0.52 query coverage 0.54

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T++ T +Y+++++EL+ ML Y EKY LYPVLYFYGFGNGIL+KALL+N+ HKH+++FE +LE+I MF++LDFS+ELEE RL+I+D N L
CJH_06700 +1267986 DNLDINLKDTKNHTFLYQDSIKELDIMLKTYNEKYLLYPVLYFYGFGNGILFKALLKNKHHKHLVIFEKELEIIKIMFHLLDFSQELEENRLLILDVNSL +1268283

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ +DY LCS P F FSRTYFLEL S+YYEK Q+++L +NNNL++ FKN+I GN P D LQGIEQ +YN+P +++ Y+ LL +R+NLSDTAIIVS
CJH_06700 +1268286 EFQDYYDLCSTSPFFEFSRTYFLELSSDYYEKDQEEILNLNNNLMDRFKNTILLKGNDPKDALQGIEQLIYNLPVLLTHAPYQNLLKQRENLSDTAIIVS +1268583

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQL LKQY+ KATI AD++YPILAK+ IKPDYV LERI T++FF+N+FG+FDKDI+F+ + HP K L+ ++ + S FI +
CJH_06700 +1268586 TGPSLAKQLDTLKQYANKATIIAADASYPILAKHGIKPDYVLSLERILSTSKFFDNNFGDFDKDILFITTHLTHPQTIKKLKNNNRNFLLSYKGSEFIYY +1268883

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKD--YQNSATFESD--TYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
+ L+ G G SVAN+AY LA L HKNIIFIGQDLAYAE+G SHP + Y N + + TY H+ TLAYGG MV T W +F+ +EK IS+
CJH_06700 +1268886 LKLKQFGEFVEGHSVANIAYGLAVFLKHKNIIFIGQDLAYAEDGSSHPSEHIYGNYDAVDKNKITY-HLKTLAYGGKNMVYTKEAWNVFRGILEKHISQT +1269183

CINS_1188 +436 EN---CATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQ-KELDSLNKMMNDFL------ +535
+ C TYNCTEGGARIEGAIEKPFKE+CETLL ++L KPF K++ LN +KQ+ELLLK+Y KI +SIK C KDF K L S N ++ F
CJH_06700 +1269186 KRLKLCTTYNCTEGGARIEGAIEKPFKELCETLLKEDLKKPFPKVEALNKDKQDELLLKSYYKIYKSIKHC----KDFSDKLLKSYNHILESFSNLNLIS +1269483

CINS_1188 +536 -LSANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECV +635
L +++LN +I +DKIK K+E+ K M DLYEILGP + QFELNLARIYVLNPKT EDS+NKS+LW+KEH+E ++ +I AQ+ LI+NI LE
CJH_06700 +1269486 NLNEGKKILNYLIQEIDKIKFKLEDGKNMLDLYEILGPLLTQFELNLARIYVLNPKTPEDSYNKSLLWVKEHIEFFDMVYEYIKAQEKALIENITPLENE +1269783

CINS_1188 +636 LINRGFEKLVEKI +648
L R EK KI
CJH_06700 +1269786 LTQRNLEKYKRKI +1269822

CINS_1188 vs: CJSA_1271 in IA3902 (Campylobacter jejuni subsp. jejuni IA3902, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: motility accessory factor

Score: 1645.00 bits: 713.41 e-value: 0.000000
length: 612 gaps: 15 id: 352 positives: 438 coverage: 0.54 query coverage 0.55

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
CJSA_1271 +1268833 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1269130

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRKNL
CJSA_1271 +1269133 MILENDKLQTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKNL +1269430

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ ATIFCADSAYPILAK++IKPDYV LERI +T+EFFN DFGEFD+D++FV S V+P KYL+K ++IS
CJSA_1271 +1269433 SDTAIIVSTGPSLTKQLPLLKKYANTATIFCADSAYPILAKHDIKPDYVLSLERIPLTSEFFNHDFGEFDRDVLFVCVSWVYPQTIKYLQKNNRNFMLIS +1269730

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+ + GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY N F+ D LAYGG V++ IW +F+
CJSA_1271 +1269733 RPSDFIKNINFHQYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1270030

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ ISRN TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
CJSA_1271 +1270033 LQNTISRNIISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNKILSNDFENIQSIY--LSLN +1270330

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E +N I +D+ K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
CJSA_1271 +1270333 EKEEDINLAIEKIDEFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKE +1270630

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
CJSA_1271 +1270633 RKLDKWMERVRR +1270666

CINS_1188 vs: CJSA_1256 in IA3902 (Campylobacter jejuni subsp. jejuni IA3902, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: motility accessory factor

Score: 1644.00 bits: 712.98 e-value: 0.000000
length: 612 gaps: 15 id: 352 positives: 438 coverage: 0.54 query coverage 0.55

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
CJSA_1256 +1251103 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1251400

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRKNL
CJSA_1256 +1251403 MILENDKLQTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKNL +1251700

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ ATIFCADSAYPILAK++IKPDYV LERI +T+EFFN DFGEFD+D++FV S V+P KYL+K ++IS
CJSA_1256 +1251703 SDTAIIVSTGPSLTKQLPLLKKYANTATIFCADSAYPILAKHDIKPDYVLSLERIPLTSEFFNHDFGEFDRDVLFVCVSWVYPQTIKYLQKNNRNFMLIS +1252000

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+ + GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY N F+ D LAYGG V++ IW +F+
CJSA_1256 +1252003 RPSDFIKNINFHQYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1252300

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ ISRN TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
CJSA_1256 +1252303 LQNTISRNIISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNKILSNDFENIQSIY--LSLN +1252600

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E +N I +D+ K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
CJSA_1256 +1252603 EKEEDINLAIEKIDEFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKE +1252900

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
CJSA_1256 +1252903 RKLDKWMERVRR +1252936

CINS_1188 vs: CJSA_1269 in IA3902 (Campylobacter jejuni subsp. jejuni IA3902, complete genome.)
Gene length: 1953bp / 651aa PV: No
Function: PseD protein

Score: 1771.00 bits: 767.76 e-value: 0.000000
length: 605 gaps: 5 id: 370 positives: 452 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL+++ T L
CJSA_1269 +1265024 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQNSRLMVLQTSSL +1265321

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRKNLSDTAIIVS
CJSA_1269 +1265324 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKNLSDTAIIVS +1265621

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DF EFDKDI F++KSVVHPNA YL KK ++S + FIN+
CJSA_1269 +1265624 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFREFDKDICFIIKSVVHPNAINYLTKKTDNFTLVSTYASFINY +1265921

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ L HKNIIFIGQDLAYA+NG+SHP DYQNSAT+ES +E I T AYGG VKTH +WL+FK +E+ I + +
CJSA_1269 +1265924 LKLDHFGYFNMGFSVAHMACYLSLHLKHKNIIFIGQDLAYAKNGNSHPDDYQNSATYESKAHEPILTKAYGGKGEVKTHHVWLMFKQNLEQDIEKIQKYL +1266221

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARI+GAIEKPF CE LL+K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + N M NE + +
CJSA_1269 +1266224 DTKVYNCTEGGARIKGAIEKPFLWACENLLAKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFMSLQNSQKNEIFIQE +1266521

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
CJSA_1269 +1266524 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1266821

CINS_1188 +636 EKICK +640
E++ +
CJSA_1269 +1266824 ERVRR +1266836

CINS_1188 vs: ICDCCJ07001_1265 in ICDCCJ07001 (Campylobacter jejuni subsp. jejuni ICDCCJ07001, complete genome.)
Gene length: 1437bp / 479aa PV: No
Function: Protein of unknown function family

Score: 1319.00 bits: 572.79 e-value: 0.000000
length: 503 gaps: 10 id: 287 positives: 355 coverage: 0.60 query coverage 0.45

CINS_1188 +138 RDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTG +237
R + CS P F FSR YFLEL S YYE++++D+L +N L FK SI SHGN P+D LQGIEQFVYN+PSMI+ PSYKELL KRKNLSDTAIIVSTG
IC..1_1265 +1288414 RFFSNFCSSKPFFQFSRIYFLELISHYYERFHEDILGLNKKLAENFKYSIISHGNDPLDALQGIEQFVYNLPSMITHPSYKELLAKRKNLSDTAIIVSTG +1288711

CINS_1188 +238 PSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFID +337
PSL KQLPLLK+Y+SKATIFCADSAYPILAK+ +KPDYV LER+ T+EFFNNDF EFDKD+ FVLKS HP KYL+K +++S + FIN++
IC..1_1265 +1288714 PSLTKQLPLLKKYASKATIFCADSAYPILAKHGLKPDYVLSLERVLETSEFFNNDFKEFDKDVWFVLKSYTHPHTTKYLQKNNRNFMLVSTYASFINYLK +1289011

CINS_1188 +338 LQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDY----QNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE- +437
L + GY G SVA MAY L+ L HKNIIFIGQDLAYA+NG+SHP ++ + E+ +Y+ + T AYGG +V T+ +W LF+N E+ + + +
IC..1_1265 +1289014 LDDFGYFDMGFSVAHMAYYLSLHLKHKNIIFIGQDLAYAKNGNSHPDEHIFGALDGEKKETISYD-LQTTAYGGEGLVYTQEVWNLFRNIFEQDVEKIQK +1289311

CINS_1188 +438 --NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLN +537
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C D K + + + + L E LN
IC..1_1265 +1289314 YLDTKVYNCTEGGARIEGTIEKPFLWACENLLHKDLDKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHCRDFSKILSDDFENIQSIY--LSLNEKEEDLN +1289611

CINS_1188 +538 DMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +637
I +D+ K K+E+ + M DLYEILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R K +
IC..1_1265 +1289614 LAIEKIDEFKNKLEDMEQMQDLYEILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQESALIKNILPLEEKLKERKLNKWM +1289911

CINS_1188 +638 EKI +640
E++
IC..1_1265 +1289914 ERV +1289920

CINS_1188 vs: CJM1_1292 in M1 (Campylobacter jejuni subsp. jejuni M1, complete genome.)
Gene length: 1965bp / 655aa PV: No
Function: Motility accessory factor

Score: 1457.00 bits: 632.32 e-value: 0.000000
length: 609 gaps: 12 id: 331 positives: 425 coverage: 0.51 query coverage 0.52

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
D LDINL NT DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL++ L+II+TN L
CJM1_1292 +1256250 DILDINLQNTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWTMFHILDFSNELQKNNLIIINTNIL +1256547

CINS_1188 +136 KRRDY--DYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAII +235
D Y +N FSR YFLEL SNYYE+Y +++L++N+ +L + K SI +GN ID L GI++F+YN+ +++ P + L KR LSDTAII
CJM1_1292 +1256550 SEFDLLNFYKKANSIFLQFSRIYFLELISNYYERYNEEILKLNDTILSTIKISIIQYGNDSIDNLMGIKHFIYNLSKLLTHPHSEIFLKKRYKLSDTAII +1256847

CINS_1188 +236 VSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFI +335
VSTGPSL KQLPLLKQY+ KATIFCADSAYPILAK+NIKPDYVCMLER DI ++ F+NDF EFDK I+F+L SVVH ++LE+ + +++ F
CJM1_1292 +1256850 VSTGPSLTKQLPLLKQYANKATIFCADSAYPILAKHNIKPDYVCMLERDDIVSKCFDNDFKEFDKGILFILASVVHKEVIEFLERNNREYMLVPRAYDFF +1257147

CINS_1188 +336 NFIDLQNLGYAYSG-PSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDY----QNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI +435
+++L G SVA M Y LA L HKNIIFIGQDLAY+++ SH KD+ F+ D ++AYGG V++ + W LF+ EK I
CJM1_1292 +1257150 YYLNLAKYFQPIDGMVSVAHMNYWLAKFLSHKNIIFIGQDLAYSKDQSSHAKDFIHEKLHEGHFQKDE-NLFTSIAYGGKGEVESSYFWKLFREIFEKWI +1257447

CINS_1188 +436 SRNEN-CATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKM---MNDFLLSA +535
S + N YNCTEGGARI+G IEKPF CE LL K+L KPF KL+ LNINKQNEL+LKAY KI +SI C D K +E + + ++ + + +
CJM1_1292 +1257450 SHDNNFINIYNCTEGGARIKGTIEKPFLWACENLLGKDLNKPFPKLNPLNINKQNELMLKAYNKIYKSIYHCKDFNKKLLQEYNEIKELYLTLENLQIEE +1257747

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
+ LLN +I +D IK ++++ K M DLYEILGP +VQFELNLARIYVLNPKT EDSFNKS++WIKEHLEWI++I HI AQ+ L +NI LE L R
CJM1_1292 +1257750 SKELLNFIIQKIDTIKYQIDDAKNMQDLYEILGPLLVQFELNLARIYVLNPKTPEDSFNKSLIWIKEHLEWIEMIYGHIQAQENALFENIIPLEQKLKER +1258047

CINS_1188 +636 GFEKLVEKI +644
+K + +I
CJM1_1292 +1258050 KMQKYLRRI +1258074

CINS_1188 vs: MTVDSCj20_1315 in MTVDSCj20 (Campylobacter jejuni subsp. jejuni strain MTVDSCj20, complete genome.)
Gene length: 1965bp / 655aa PV: No
Function: PseD protein

Score: 1457.00 bits: 632.32 e-value: 0.000000
length: 609 gaps: 12 id: 331 positives: 425 coverage: 0.51 query coverage 0.52

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
D LDINL NT DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL++ L+II+TN L
MT..0_1315 +1291347 DILDINLQNTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWTMFHILDFSNELQKNNLIIINTNIL +1291644

CINS_1188 +136 KRRDY--DYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAII +235
D Y +N FSR YFLEL SNYYE+Y +++L++N+ +L + K SI +GN ID L GI++F+YN+ +++ P + L KR LSDTAII
MT..0_1315 +1291647 SEFDLLNFYKKANSIFLQFSRIYFLELISNYYERYNEEILKLNDTILSTIKISIIQYGNDSIDNLMGIKHFIYNLSKLLTHPHSEIFLKKRYKLSDTAII +1291944

CINS_1188 +236 VSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFI +335
VSTGPSL KQLPLLKQY+ KATIFCADSAYPILAK+NIKPDYVCMLER DI ++ F+NDF EFDK I+F+L SVVH ++LE+ + +++ F
MT..0_1315 +1291947 VSTGPSLTKQLPLLKQYANKATIFCADSAYPILAKHNIKPDYVCMLERDDIVSKCFDNDFKEFDKGILFILASVVHKEVIEFLERNNREYMLVPRAYDFF +1292244

CINS_1188 +336 NFIDLQNLGYAYSG-PSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDY----QNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI +435
+++L G SVA M Y LA L HKNIIFIGQDLAY+++ SH KD+ F+ D ++AYGG V++ + W LF+ EK I
MT..0_1315 +1292247 YYLNLAKYFQPIDGMVSVAHMNYWLAKFLSHKNIIFIGQDLAYSKDQSSHAKDFIHEKLHEGHFQKDE-NLFTSIAYGGKGEVESSYFWKLFREIFEKWI +1292544

CINS_1188 +436 SRNEN-CATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKM---MNDFLLSA +535
S + N YNCTEGGARI+G IEKPF CE LL K+L KPF KL+ LNINKQNEL+LKAY KI +SI C D K +E + + ++ + + +
MT..0_1315 +1292547 SHDNNFINIYNCTEGGARIKGTIEKPFLWACENLLGKDLNKPFPKLNPLNINKQNELMLKAYNKIYKSIYHCKDFNKKLLQEYNEIKELYLTLENLQIEE +1292844

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
+ LLN +I +D IK ++++ K M DLYEILGP +VQFELNLARIYVLNPKT EDSFNKS++WIKEHLEWI++I HI AQ+ L +NI LE L R
MT..0_1315 +1292847 SKELLNFIIQKIDTIKYQIDDAKNMQDLYEILGPLLVQFELNLARIYVLNPKTPEDSFNKSLIWIKEHLEWIEMIYGHIQAQENALFENIIPLEQKLKER +1293144

CINS_1188 +636 GFEKLVEKI +644
+K + +I
MT..0_1315 +1293147 KMQKYLRRI +1293171

CINS_1188 vs: ERS445056_01444 in NCTC11351 (Campylobacter jejuni genome assembly NCTC11351, chromosome : 1.)
Gene length: 1944bp / 648aa PV: No
Function: PseD protein

Score: 1758.00 bits: 762.16 e-value: 0.000000
length: 605 gaps: 5 id: 367 positives: 450 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL+I+ T L
ER.._01444 +1371087 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQNSRLMILQTSSL +1371384

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++DVL +N L +FK SI SHGN P+D LQGIEQFVYN+P MI+ PSY +LL KRKNLSDTAIIVS
ER.._01444 +1371387 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAETFKYSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYTKLLSKRKNLSDTAIIVS +1371684

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADSAYPILAK++IKPDYVCMLER + TAEFFN DFGEFD+++ F++KSVVHPNA YL KK ++S + FIN+
ER.._01444 +1371687 TGPSLTKQLPLLKKYANKATIFCADSAYPILAKHDIKPDYVCMLERSEFTAEFFNHDFGEFDREVCFIIKSVVHPNAINYLTKKTDNFTLVSTYASFINY +1371984

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ L HKNIIFIGQDLAYA+NG+SHP DYQNSAT+ES +E I T AYGG VKTH +WL+FK +E+ I + +
ER.._01444 +1371987 LKLDHFGYFNMGFSVAHMACYLSLHLKHKNIIFIGQDLAYAKNGNSHPDDYQNSATYESKAHEPILTKAYGGKGEVKTHHVWLMFKQNLEQDIEKIQKYL +1372284

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARI+GAIEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + N M NE + +
ER.._01444 +1372287 DTKVYNCTEGGARIKGAIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFMSLQNSQKNEIFIQE +1372584

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
ER.._01444 +1372587 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1372884

CINS_1188 +636 EKICK +640
E++ +
ER.._01444 +1372887 ERVRR +1372899

CINS_1188 vs: ERS445056_01446 in NCTC11351 (Campylobacter jejuni genome assembly NCTC11351, chromosome : 1.)
Gene length: 1953bp / 651aa PV: Yes
Function: motility accessory factor

Score: 1650.00 bits: 715.57 e-value: 0.000000
length: 612 gaps: 15 id: 353 positives: 440 coverage: 0.54 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL AMLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
ER.._01446 +1374896 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQAMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1375193

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRKNL
ER.._01446 +1375196 MILENDKLQTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKNL +1375493

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ ATIFCADS+YPILAK++IKPDYV LERI +T+EFFNNDFGEFD+D++FV S V+P KYL+K ++IS
ER.._01446 +1375496 SDTAIIVSTGPSLTKQLPLLKKYANTATIFCADSSYPILAKHDIKPDYVLSLERIPLTSEFFNNDFGEFDRDVLFVCVSWVYPQTIKYLQKNNRNFMLIS +1375793

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+ + GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY N F+ D LAYGG V++ IW +F+
ER.._01446 +1375796 RPSDFIKNINFHQYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1376093

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ ISRN TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
ER.._01446 +1376096 LQNTISRNIISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNKILSNDFENIQSIY--LSLN +1376393

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E +N I +D+ K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
ER.._01446 +1376396 EKEEDINLAIEKIDEFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKE +1376693

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
ER.._01446 +1376696 RKLDKWMERVRR +1376729

CINS_1188 vs: ERS445056_01430 in NCTC11351 (Campylobacter jejuni genome assembly NCTC11351, chromosome : 1.)
Gene length: 1947bp / 649aa PV: Yes
Function: motility accessory factor

Score: 1688.00 bits: 731.96 e-value: 0.000000
length: 611 gaps: 15 id: 363 positives: 443 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL AMLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
ER.._01430 +1357172 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQAMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1357469

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSY +LL KRKNL
ER.._01430 +1357472 MILENDKLQTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYTKLLSKRKNL +1357769

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ ATIFCADS+YPILAK++IKPDYVCMLER + TAEFFN DFGEFD+DIVF+ VVHP A +YL K +V+
ER.._01430 +1357772 SDTAIIVSTGPSLTKQLPLLKKYANTATIFCADSSYPILAKHDIKPDYVCMLERSEFTAEFFNHDFGEFDRDIVFICAGVVHPKAIEYL--KGRNLVITQ +1358069

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ +I+L++ YA G SVA M LAT LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYG VKTH IW+LFKN E
ER.._01430 +1358072 KVLGLPYYINLKDFSYAAVGFSVAHMLAYLATYLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTKAYGEKEEVKTHAIWILFKNYFENE +1358369

CINS_1188 +436 ISRNE---NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
I N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
ER.._01430 +1358372 IIPNTIKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNKILSNDFENIQSIY--LSLNE +1358669

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +D+ K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
ER.._01430 +1358672 KEEDINLAIEKIDEFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1358969

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
ER.._01430 +1358972 KLDKWMERVRR +1359002

CINS_1188 vs: H730_07620 in R14 (Campylobacter jejuni subsp. jejuni R14, complete genome.)
Gene length: 1941bp / 647aa PV: Yes
Function: motility accessory factor

Score: 1670.00 bits: 724.20 e-value: 0.000000
length: 608 gaps: 11 id: 355 positives: 436 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ----DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIID +135
DNLDINL + + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+I++
H730_07620 +1368588 DNLDINLKDNSGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMILE +1368885

CINS_1188 +136 TNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTA +235
T L + CS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTA
H730_07620 +1368888 TSSLDIELFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTA +1369185

CINS_1188 +236 IIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSH +335
IIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLERI +TAEFFNNDFGEFDKDI+FV+KS V+P KYL+K ++ S S
H730_07620 +1369188 IIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERIPLTAEFFNNDFGEFDKDILFVIKSWVYPQTIKYLQKNNRAFILTSRPSS +1369485

CINS_1188 +336 FINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
FI I+L GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY+N F D LAYGG V++ IW +F+ ++
H730_07620 +1369488 FIENINLCPYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYKNLDKHEGHFRRDK-GKFQCLAYGGNGKVESSEIWTMFRFSLQNT +1369785

CINS_1188 +436 ISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER +535
IS+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L E
H730_07620 +1369788 ISKNIVSTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNEKEE +1370085

CINS_1188 +536 LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFE +635
+N I +DK K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +
H730_07620 +1370088 DINLAIEKIDKFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQESALIKNILPLEEKLKERKLD +1370385

CINS_1188 +636 KLVEKICK +643
K +E++ +
H730_07620 +1370388 KWMERVRR +1370409

CINS_1188 vs: H730_07630 in R14 (Campylobacter jejuni subsp. jejuni R14, complete genome.)
Gene length: 1935bp / 645aa PV: Yes
Function: motility accessory factor

Score: 1702.00 bits: 738.00 e-value: 0.000000
length: 607 gaps: 11 id: 364 positives: 439 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQ----DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIID +135
DNLDINL + + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+I++
H730_07630 +1372397 DNLDINLKDNSGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMILE +1372694

CINS_1188 +136 TNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTA +235
+ L+ +DY LCS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTA
H730_07630 +1372697 NDKLQAQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDSADTLQGIEQFVYNLPQMITHPSYKELLSKRKGISDTA +1372994

CINS_1188 +236 IIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSH +335
IIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +I AEFFNNDFGEFDKDIVF+ VVHP A +YL K +V+ +
H730_07630 +1372997 IIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERDEIVAEFFNNDFGEFDKDIVFICAGVVHPKAIEYL--KGRNLVITQKVLA +1373294

CINS_1188 +336 FINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG VKTH IW+LFK E I N
H730_07630 +1373297 FPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTKAYGGKEEVKTHAIWILFKKYFENEIIPN +1373594

CINS_1188 +436 E---NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERL +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L E
H730_07630 +1373597 TIKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIY--LSLNEKEED +1373894

CINS_1188 +536 LNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEK +635
+N I +DK K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K
H730_07630 +1373897 INLAIEKIDKFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQESALIKNILPLEEKLKERKLDK +1374194

CINS_1188 +636 LVEKICK +642
+E++ +
H730_07630 +1374197 WMERVRR +1374215

CINS_1188 vs: CJE1524 in RM1221 (Campylobacter jejuni RM1221, complete genome.)
Gene length: 1917bp / 639aa PV: No
Function: motility accessory factor

Score: 1770.00 bits: 767.33 e-value: 0.000000
length: 602 gaps: 7 id: 372 positives: 447 coverage: 0.58 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++E N+MLN Y +KY LYPVLYFYGFGNGILYKALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+I+ T L
CJE1524 +1416381 DNLDINLKDTSDNTFLYENVIDEFNSMLNTYNDKYLLYPVLYFYGFGNGILYKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQSARLMILQTSSL +1416678

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
CJE1524 +1416681 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1416978

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFNNDFGEFDKDIVFV VVHP A +YL+ + K ++I +F +
CJE1524 +1416981 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNNDFGEFDKDIVFVCSGVVHPKAIEYLKGRNRKYLIIPRYLYFPIY +1417278

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNENCA +435
I L+ + Y PSVA M+Y L+ LNHKNII IGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH +W+ FK +E +I +
CJE1524 +1417281 IKLKYFDFLYNTPSVAHMSYFLSVLLNHKNIILIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKKEIKTHEVWIFFKQILEAMIIKY-HIT +1417578

CINS_1188 +436 TYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER--LLNDMI +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C +DF K L + + LS NE+ LN I
CJE1524 +1417581 TYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHC----RDFSKILSNDFEKIQSIYLSLNEKEEYLNLAI +1417878

CINS_1188 +536 LHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKI +635
+D+ K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++
CJE1524 +1417881 EKIDEFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERV +1418178

CINS_1188 +636 CK +637
+
CJE1524 +1418181 RR +1418184

CINS_1188 vs: CJE1522 in RM1221 (Campylobacter jejuni RM1221, complete genome.)
Gene length: 1962bp / 654aa PV: No
Function: motility accessory factor

Score: 1672.00 bits: 725.06 e-value: 0.000000
length: 608 gaps: 8 id: 354 positives: 433 coverage: 0.54 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++E N+MLN Y +KY LYPVLYFYGFGNGILYKALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+I+ T L
CJE1522 +1412563 DNLDINLKDTSDNTFLYENVIDEFNSMLNTYNDKYLLYPVLYFYGFGNGILYKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQSARLMILQTSSL +1412860

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
CJE1522 +1412863 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1413160

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFNNDFGEFDKDIVF++KSV HP KYL+K +++S + FI +
CJE1522 +1413163 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNNDFGEFDKDIVFIVKSVTHPHTIKYLQKNNRAFILVSTYASFIQY +1413460

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHID---TLAYGGGYMVKTHFIWLLFKNEMEK---LIS +435
+ L GY G SVA M + L L +KNII IGQDLAYA++G +H + + + D +D T AYGG V++ IW LF+ EK I
CJE1522 +1413463 LKLDYFGYFNMGFSVAHMNFLLTIHLKYKNIILIGQDLAYAKDGQTHSQGFIHANLHNGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRHNFEKDIVNIK +1413760

CINS_1188 +436 RNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERL +535
N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + N M NE
CJE1522 +1413763 MNYHITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFMSLQNSQKNEIF +1414060

CINS_1188 +536 LNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFE +635
+ ++I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +
CJE1522 +1414063 IQEIIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLD +1414360

CINS_1188 +636 KLVEKICK +643
K +E++ +
CJE1522 +1414363 KWMERVRR +1414384

CINS_1188 vs: CjjRM1285_1333 in RM1285 (Campylobacter jejuni subsp. jejuni strain RM1285, complete genome.)
Gene length: 1968bp / 656aa PV: No
Function: motility accessory factor (function unknown)

Score: 1564.00 bits: 678.47 e-value: 0.000000
length: 609 gaps: 12 id: 341 positives: 435 coverage: 0.52 query coverage 0.54

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL NT DNT +Y+N ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE +LE+I M +++DFS+EL+E +L+I+D N L
Cj..5_1333 +1294959 DNLDINLKNTSDNTFLYKNAIDELNSMLNIYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKELEIIKIMLHLMDFSQELKENKLIILDINSL +1295256

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ +DY LCS +P F FSRTYFLEL S+YYEK + +L++N +L+ FKNSI +GN D LQGIEQ +YN+P MI+ +Y++ L KR+NLSDTAIIVS
Cj..5_1333 +1295259 EFQDYYDLCSSNPFFQFSRTYFLELSSDYYEKDKKYILKLNKDLIEKFKNSILLYGNDSKDNLQGIEQLIYNLPKMITHTAYQDFLKKRENLSDTAIIVS +1295556

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLP+LK+Y+ KATI ADS+YPILAK++IKPDYV LERI +T+EFFNN+FG+FDKDI+F+ + HP K LEK +++ S F +
Cj..5_1333 +1295559 TGPSLTKQLPILKKYANKATIISADSSYPILAKHDIKPDYVVSLERILLTSEFFNNNFGDFDKDILFITTHLTHPQTIKNLEKNNRNFMLVHRSSEFTTY +1295856

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI--- +435
+ L+ G G SVAN+AY LA L HKNIIFIGQDLAY+ +G SH KDY+N +E D + H T+AYGG V++ F W LF+ +EK I
Cj..5_1333 +1295859 LKLKKFGELCEGHSVANVAYGLAVFLRHKNIIFIGQDLAYSNDGFSHTKDYRNLNKHEGHYERD-FGHFRTIAYGGVGFVESSFYWSLFRFFLEKRIHEA +1296156

CINS_1188 +436 SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSAN--- +535
+ E C TYNCTEGGARIEGAIEKPFK+ CE LL NL K F K+D L KQNELLLK Y KI +SI C + KK+ K + + + + L +N
Cj..5_1333 +1296159 NQLELCNTYNCTEGGARIEGAIEKPFKKTCEALLKNNLNKNFPKIDPLSSHKQNELLLKCYYKIIKSINHCKNFKKELLKSYNHIQESFSNLNLISNLDE +1296456

CINS_1188 +536 -ERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
+ +LN +I +DKIK K+E+ K M DL EIL +VQFELNLARI+VLNPKT EDS+ KS+LW+KEH+E ++I HI AQ+ LIKNI LE L R
Cj..5_1333 +1296459 GKEILNYLIQEIDKIKFKLEDRKNMLDLCEILKTLLVQFELNLARIFVLNPKTSEDSYKKSLLWVKEHIEFFKMIYTHIEAQEKALIKNIIPLENELTQR +1296756

CINS_1188 +636 GFEKLVEKI +644
EK KI
Cj..5_1333 +1296759 NLEKYKRKI +1296783

CINS_1188 vs: AXW77_06575 in RM3194 (Campylobacter jejuni strain RM3194, complete genome.)
Gene length: 1929bp / 643aa PV: Yes
Function: PseD protein

Score: 1705.00 bits: 739.29 e-value: 0.000000
length: 604 gaps: 7 id: 358 positives: 440 coverage: 0.56 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ----DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIID +135
DNLDINL + + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++
AX.._06575 +1262564 DNLDINLKDNSGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLQ +1262861

CINS_1188 +136 TNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTA +235
T L + CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTA
AX.._06575 +1262864 TSSLDIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTA +1263161

CINS_1188 +236 IIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSH +335
IIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDI+FV VVHP A +YL+ + K ++ +
AX.._06575 +1263164 IIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDILFVCAGVVHPKAIEYLKGRNRKYLITPRYLY +1263461

CINS_1188 +336 FINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
F +I L+ + Y PSVA M+Y L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES Y+HI T AYGG +KTH +W+ FK +E +I +
AX.._06575 +1263464 FPIYIKLKYFDFLYNTPSVAHMSYFLSVLLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYKHILTEAYGGKKEIKTHEVWIFFKQILEAMIIKY +1263761

CINS_1188 +436 ENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLND +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + + L E LN
AX.._06575 +1263764 -HITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIYLN--LNKKENDLNL +1264061

CINS_1188 +536 MILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVE +635
I +D+ K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E
AX.._06575 +1264064 AIRKIDEFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWME +1264361

CINS_1188 +636 KICK +639
++ +
AX.._06575 +1264364 RVRR +1264373

CINS_1188 vs: AXW77_06490 in RM3194 (Campylobacter jejuni strain RM3194, complete genome.)
Gene length: 1923bp / 641aa PV: No
Function: PseD protein

Score: 1662.00 bits: 720.75 e-value: 0.000000
length: 604 gaps: 9 id: 354 positives: 434 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
AX.._06490 +1245743 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLQTSSL +1246040

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
AX.._06490 +1246043 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1246340

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKDI+FV VVHP +YL+ K ++ + F +
AX.._06490 +1246343 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFVCAGVVHPKTIEYLKNKT--FIITQKILAFPYY +1246640

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
I+L+N YA G SVA MAY+ AT L HKNIIFIGQDLAYAE+G SH KDY N F+ D LAYGG ++ +W +F+ ++ ISRN
AX.._06490 +1246643 INLKNFCYAAVGFSVAHMAYEFATHLSHKNIIFIGQDLAYAEDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGDGKAESSEVWTMFRFFLQDTISRN +1246940

CINS_1188 +436 ENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLND +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + + L E LN
AX.._06490 +1246943 IISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSIYLN--LNKKENDLNL +1247240

CINS_1188 +536 MILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVE +635
I +D+ K K+E+ K M DLYEIL ++QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E
AX.._06490 +1247243 AIRKIDEFKNKLEDIKQMQDLYEILSTLLIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWME +1247540

CINS_1188 +636 KICK +639
++ +
AX.._06490 +1247543 RVRR +1247552

CINS_1188 vs: AXW77_06565 in RM3194 (Campylobacter jejuni strain RM3194, complete genome.)
Gene length: 1950bp / 650aa PV: No
Function: PseD protein

Score: 1687.00 bits: 731.53 e-value: 0.000000
length: 609 gaps: 10 id: 359 positives: 442 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
AX.._06565 +1258746 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLQTSSL +1259043

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
AX.._06565 +1259046 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1259343

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKDI+FVLKS VHP KYL+K +++S + FIN+
AX.._06565 +1259346 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFVLKSYVHPHTTKYLQKNNRNFMLVSTYASFINY +1259643

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLIS-- +435
+ L + GY G SVANM + LA L HKNI+ IGQDLAYAE+G SH KDY N F+ D ++ T AYG V++ F+W LF+ E+ ++
AX.._06565 +1259646 LKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIGQDLAYAEDGLSHTKDYSNLDKHEGHFQRDKNKYT-TQAYGDNGKVESSFVWTLFRHNFEQDVANA +1259943

CINS_1188 +436 -RNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANER +535
+N TYNCTEGGARIEGAIEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D F K D + N M N+
AX.._06565 +1259946 KKNYYITTYNCTEGGARIEGAIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSNKFIKSYDKIKNSFMSLQNSQENKT +1260243

CINS_1188 +536 LLNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGF +635
L+ ++I +DKIK ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
AX.._06565 +1260246 LIKEIIKDIDKIKTQIDELYNTQKDLMQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYEHIKAQENALIKNILPLEEKLKERKL +1260543

CINS_1188 +636 EKLVEKICK +644
+K +E++ K
AX.._06565 +1260546 DKWMERVRK +1260570

CINS_1188 vs: CjjRM3196_1335 in RM3196 (Campylobacter jejuni subsp. jejuni strain RM3196, complete genome.)
Gene length: 2001bp / 667aa PV: Yes
Function: hypothetical protein

Score: 1614.00 bits: 700.04 e-value: 0.000000
length: 613 gaps: 18 id: 348 positives: 437 coverage: 0.52 query coverage 0.55

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+++RL
Cj..6_1335 +1288205 DNLDINLKDTSIKNNGGGYSENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQKSRL +1288502

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+++ T L + CS P F FSR YFLEL S YYE++++D+L +N L FK SI SHGN P+D LQGIEQFVYN+PSMI+ PSYKELL KRKNL
Cj..6_1335 +1288505 MVLQTSSLDIEFFSNFCSSKPFFQFSRIYFLELISHYYERFHEDILGLNKKLAENFKYSIISHGNDPLDALQGIEQFVYNLPSMITHPSYKELLAKRKNL +1288802

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADSAYPILAK+ +KPDYV LER+ T+EFFNNDF EFDKD+ FVLKS HP KYL+K +++S
Cj..6_1335 +1288805 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSAYPILAKHGLKPDYVLSLERVLETSEFFNNDFKEFDKDVWFVLKSYTHPHTTKYLQKNNRNFMLVS +1289102

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDY----QNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
+ FIN++ L + GY G SVA MAY L+ L HKNIIFIGQDLAYA+NG+SHP ++ + E+ +Y+ + T AYGG +V T+ +W LF+N
Cj..6_1335 +1289105 TYASFINYLKLDDFGYFDMGFSVAHMAYYLSLHLKHKNIIFIGQDLAYAKNGNSHPDEHIFGALDGEKKETISYD-LQTTAYGGEGLVYTQEVWNLFRNI +1289402

CINS_1188 +436 MEKLISRNE---NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDF +535
E+ + + + + YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C D K + + + +
Cj..6_1335 +1289405 FEQDVEKIQKYLDTKVYNCTEGGARIEGTIEKPFLWACENLLHKDLDKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHCRDFSKILSDDFENIQSIY--L +1289702

CINS_1188 +536 LLSANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECV +635
L E LN I +D+ K K+E+ + M DLYEILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE
Cj..6_1335 +1289705 SLNEKEEDLNLAIEKIDEFKNKLEDMEQMQDLYEILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQESALIKNILPLEEK +1290002

CINS_1188 +636 LINRGFEKLVEKI +648
L R K +E++
Cj..6_1335 +1290005 LKERKLNKWMERV +1290041

CINS_1188 vs: CjjRM3197_1335 in RM3197 (Campylobacter jejuni subsp. jejuni strain RM3197, complete genome.)
Gene length: 2002bp / 667aa PV: Yes
Function: No annotation data

Score: 1598.00 bits: 693.14 e-value: 0.000000
length: 593 gaps: 14 id: 343 positives: 431 coverage: 0.51 query coverage 0.54

CINS_1188 +50 LMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPM +149
L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+++RL+++ T L + CS P
Cj..7_1335 +1288271 LLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQKSRLMVLQTSSLDIEFFSNFCSSKPF +1288568

CINS_1188 +150 FNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQ +249
F FSR YFLEL S YYE++++D+L +N L FK SI SHGN P+D LQGIEQFVYN+PSMI+ PSYKELL KRKNLSDTAIIVSTGPSL KQLPLLK+
Cj..7_1335 +1288571 FQFSRIYFLELISHYYERFHEDILGLNKKLAENFKYSIISHGNDPLDALQGIEQFVYNLPSMITHPSYKELLAKRKNLSDTAIIVSTGPSLTKQLPLLKK +1288868

CINS_1188 +250 YSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPS +349
Y+SKATIFCADSAYPILAK+ +KPDYV LER+ T+EFFNNDF EFDKD+ FVLKS HP KYL+K +++S + FIN++ L + GY G S
Cj..7_1335 +1288871 YASKATIFCADSAYPILAKHGLKPDYVLSLERVLETSEFFNNDFKEFDKDVWFVLKSYTHPHTTKYLQKNNRNFMLVSTYASFINYLKLDDFGYFDMGFS +1289168

CINS_1188 +350 VANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSA----TFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE---NCATYNCTEG +449
VA MAY L+ L HKNIIFIGQDLAYA+NG+SHP ++ A E+ +Y+ + T AYGG +V T+ +W LF+N E+ + + + + YNCTEG
Cj..7_1335 +1289171 VAHMAYYLSLHLKHKNIIFIGQDLAYAKNGNSHPDEHIFGALDGEKKETISYD-LQTTAYGGEGLVYTQEVWNLFRNIFEQDVEKIQKYLDTKVYNCTEG +1289468

CINS_1188 +450 GARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERL--LNDMILHVDKIK +549
GARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C D K + + + + LS NE+ LN I +D+ K
Cj..7_1335 +1289471 GARIEGTIEKPFLWACENLLHKDLDKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHCRDFSKILSDDFENIQSIY----LSLNEKEEDLNLAIEKIDEFK +1289768

CINS_1188 +550 IKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKI +642
K+E+ + M DLYEILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R K +E++
Cj..7_1335 +1289771 NKLEDMEQMQDLYEILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQESALIKNILPLEEKLKERKLNKWMERV +1290047

CINS_1188 vs: CJS3_1430 in S3 (Campylobacter jejuni subsp. jejuni S3, complete genome.)
Gene length: 1916bp / 638aa PV: No
Function: No annotation data

Score: 859.00 bits: 374.36 e-value: 0.000000
length: 243 gaps: 0 id: 168 positives: 205 coverage: 0.59 query coverage 0.59

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++E N+MLN Y +KY LYPVLYFYGFGNGILYKALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL++++TN L
CJS3_1430 +1321662 DNLDINLKDTSDNTFLYENVIDEFNSMLNTYNDKYLLYPVLYFYGFGNGILYKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQNSRLMVLNTNKL +1321959

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ +DY+ LCS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
CJS3_1430 +1321962 EIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1322259

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCM +278
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVC+
CJS3_1430 +1322262 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCI +1322388

Score: 922.00 bits: 401.54 e-value: 0.000000
length: 361 gaps: 8 id: 206 positives: 251 coverage: 0.59 query coverage 0.59

CINS_1188 +276 VCM-LERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLA +375
+C+ LER +ITAEFFNNDFGEFDKDIVFV VVHP A +YL+ + K ++I +F +I L+ + Y PSVA M+Y L+ LNHKNII IGQDLA
CJS3_1430 +1322378 LCLYLERTEITAEFFNNDFGEFDKDIVFVCSGVVHPKAIEYLKGRNRKYLIIPRYLYFPIYIKLKYFDFLYNTPSVAHMSYFLSVLLNHKNIILIGQDLA +1322675

CINS_1188 +376 YAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLD +475
YAENG+SHP DYQNSA +ES YEHI T AYGG +KTH +W+ FK +E +I + TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+
CJS3_1430 +1322678 YAENGNSHPDDYQNSANYESQMYEHILTEAYGGKKEIKTHEVWIFFKQILEAMIIKY-HITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLE +1322975

CINS_1188 +476 TLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER--LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYV +575
L +NKQNE LLKAY K+ +SIK C +DF K L + + LS NE+ LN I +D+ K K+E+ K M DLYEIL P QFELNLARIYV
CJS3_1430 +1322978 PLSLNKQNEFLLKAYYKVCKSIKHC----RDFSKILSNDFEKIQSIYLSLNEKEEYLNLAIEKIDEFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYV +1323275

CINS_1188 +576 LNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKI +636
LNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++
CJS3_1430 +1323278 LNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERV +1323458

CINS_1188 vs: CJS3_1427 in S3 (Campylobacter jejuni subsp. jejuni S3, complete genome.)
Gene length: 1949bp / 649aa PV: No
Function: No annotation data

Score: 841.00 bits: 366.60 e-value: 0.000000
length: 243 gaps: 0 id: 166 positives: 198 coverage: 0.54 query coverage 0.55

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++E N+MLN Y +KY LYPVLYFYGFGNGILYKALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+I+ T L
CJS3_1427 +1317845 DNLDINLKDTSDNTFLYENVIDEFNSMLNTYNDKYLLYPVLYFYGFGNGILYKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQSARLMILQTSSL +1318142

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
CJS3_1427 +1318145 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1318442

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCM +278
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVC+
CJS3_1427 +1318445 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCI +1318571

Score: 805.00 bits: 351.07 e-value: 0.000000
length: 369 gaps: 9 id: 186 positives: 236 coverage: 0.54 query coverage 0.55

CINS_1188 +276 VCM-LERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLA +375
+C+ LER +I AE FNNDFGEFDKDIVF++KSV HP KYL+K +++S + FI ++ L GY G SVA M + L L +KNII IGQDLA
CJS3_1427 +1318561 LCLYLERDEIVAECFNNDFGEFDKDIVFIVKSVTHPHTIKYLQKNNRAFILVSTYASFIQYLKLDYFGYFNMGFSVAHMNFLLTIHLKYKNIILIGQDLA +1318858

CINS_1188 +376 YAENGDSHPKDYQNSATFESDTYEHID---TLAYGGGYMVKTHFIWLLFKNEMEK---LISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHK +475
YA++G +H + + + D +D T AYGG V++ IW LF+ EK I N TYNCTEGGARIEG IEKPF CE LL K+L K
CJS3_1427 +1318861 YAKDGQTHSQGFIHANLHNGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRHNFEKDIVNIKMNYHITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNK +1319158

CINS_1188 +476 PFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELN +575
PF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + N M NE + ++I +DK K ++ E + T DL +ILGP + QFELN
CJS3_1427 +1319161 PFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFMSLQNSQKNEIFIQEIIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELN +1319458

CINS_1188 +576 LARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +644
LARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
CJS3_1427 +1319461 LARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRR +1319665

CINS_1188 vs: A0W69_07845 in WP2202 (Campylobacter jejuni strain WP2202, complete genome.)
Gene length: 1782bp / 594aa PV: Yes
Function: PseD protein

Score: 1668.00 bits: 723.33 e-value: 0.000000
length: 589 gaps: 7 id: 352 positives: 426 coverage: 0.59 query coverage 0.55

CINS_1188 +50 LMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPM +149
L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HIIVFE D+E+I+ MF++LDFS EL+ +RL+I+ T L + CS P
A0.._07845 +1463632 LLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIIVFEKDIEIIWVMFHVLDFSNELQNSRLMILQTSSLDIEFFSNFCSSKPF +1463929

CINS_1188 +150 FNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQ +249
F FSR YFLEL S YYE++++D+L +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVSTGPSL KQLPLLK+
A0.._07845 +1463932 FQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKK +1464229

CINS_1188 +250 YSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPS +349
Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDI+F+ VVHP A +YL K +V+ + F +I+L++ YA G S
A0.._07845 +1464232 YANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIIFICAGVVHPKAIEYL--KDRNLVITQKVLAFPYYINLKDFSYAAVGFS +1464529

CINS_1188 +350 VANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI---SRNENCATYNCTEGGARI +449
VA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E + +R TYNCTEGGARI
A0.._07845 +1464532 VAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENEMIPNTRKMGITTYNCTEGGARI +1464829

CINS_1188 +450 EGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLNDMILHVDKIKIKVENF +549
EG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D K + + + + L E +N I +DK K K+E+
A0.._07845 +1464832 EGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFSKILSNDFENIQSIY--LSLNEKEEDINLAIEKIDKFKNKLEDI +1465129

CINS_1188 +550 KTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +638
K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
A0.._07845 +1465132 KQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRR +1465396

CINS_1188 vs: QZ67_01453 in YH001 (Campylobacter jejuni subsp. jejuni strain YH001, complete genome.)
Gene length: 1512bp / 504aa PV: Yes
Function: hypothetical protein

Score: 1339.00 bits: 581.41 e-value: 0.000000
length: 473 gaps: 14 id: 284 positives: 348 coverage: 0.56 query coverage 0.45

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
QZ67_01453 +1322718 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1323015

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRKNL
QZ67_01453 +1323018 MILENDKLQTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKNL +1323315

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ ATIFCADSAYPILAK++IKPDYV LERI +T+EFFN DFGEFD+D++FV S V+P KYL+K ++IS
QZ67_01453 +1323318 SDTAIIVSTGPSLTKQLPLLKKYANTATIFCADSAYPILAKHDIKPDYVLSLERIPLTSEFFNHDFGEFDRDVLFVCVSWVYPQTIKYLQKNNRNFMLIS +1323615

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+ + GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY N F+ D LAYGG V++ IW +F+
QZ67_01453 +1323618 RPSDFIKNINFHQYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1323915

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLL-KAYCKINQS +508
++ ISRN TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LL AY K+ QS
QZ67_01453 +1323918 LQNTISRNIISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLL*MAYYKVYQS +1324134

CINS_1188 vs: QZ67_01469 in YH001 (Campylobacter jejuni subsp. jejuni strain YH001, complete genome.)
Gene length: 1944bp / 648aa PV: No
Function: hypothetical protein

Score: 1777.00 bits: 770.35 e-value: 0.000000
length: 605 gaps: 5 id: 372 positives: 455 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+I++ + L
QZ67_01469 +1336646 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMILENDKL +1336943

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRKNLSDTAIIVS
QZ67_01469 +1336946 QTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKNLSDTAIIVS +1337243

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ ATIFCADSAYPILAK+ IKPDYVCMLER +ITAEFFN DF EFDKDI F++KSVVHPNA YL KK ++S + FIN+
QZ67_01469 +1337246 TGPSLTKQLPLLKKYANTATIFCADSAYPILAKHGIKPDYVCMLERTEITAEFFNHDFREFDKDICFIIKSVVHPNAINYLTKKTDNFTLVSTYASFINY +1337543

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ L HKNIIFIGQDLAYA+NG+SHP DYQNSAT+ES +E I T AYGG VKTH +WL+FK +E+ I + +
QZ67_01469 +1337546 LKLDHFGYFNMGFSVAHMACYLSLHLKHKNIIFIGQDLAYAKNGNSHPDDYQNSATYESKAHEPILTKAYGGKGEVKTHHVWLMFKQNLEQDIEKIQKYL +1337843

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSL-NKMMNDFLLSANERLLND +535
+ YNCTEGGARI+GAIEKPF CE LL+K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + N M NE + +
QZ67_01469 +1337846 DTKVYNCTEGGARIKGAIEKPFLWACENLLAKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFMSLQNSQKNEIFIQE +1338143

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
QZ67_01469 +1338146 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1338443

CINS_1188 +636 EKICK +640
E++ +
QZ67_01469 +1338446 ERVRR +1338458

CINS_1188 vs: QZ67_01471 in YH001 (Campylobacter jejuni subsp. jejuni strain YH001, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: hypothetical protein

Score: 1645.00 bits: 713.41 e-value: 0.000000
length: 612 gaps: 15 id: 352 positives: 438 coverage: 0.54 query coverage 0.55

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNG+L+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
QZ67_01471 +1340455 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGVLFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARL +1340752

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+I++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L+ FK+SI SHGN D LQGIEQFVYN+P MI+ PSYKELL KRKNL
QZ67_01471 +1340755 MILENDKLQTQDYNELCSFKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLVQYFKDSIISHGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKNL +1341052

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ ATIFCADSAYPILAK++IKPDYV LERI +T+EFFN DFGEFD+D++FV S V+P KYL+K ++IS
QZ67_01471 +1341055 SDTAIIVSTGPSLTKQLPLLKKYANTATIFCADSAYPILAKHDIKPDYVLSLERIPLTSEFFNHDFGEFDRDVLFVCVSWVYPQTIKYLQKNNRNFMLIS +1341352

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+ + GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY N F+ D LAYGG V++ IW +F+
QZ67_01471 +1341355 RPSDFIKNINFHQYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1341652

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ ISRN TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
QZ67_01471 +1341655 LQNTISRNIISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNKILSNDFENIQSIY--LSLN +1341952

CINS_1188 +536 ANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLIN +635
E +N I +D+ K K+E+ K M DLY+IL +QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
QZ67_01471 +1341955 EKEEDINLAIEKIDEFKNKLEDIKQMQDLYDILQSLFIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKE +1342252

CINS_1188 +636 RGFEKLVEKICK +647
R +K +E++ +
QZ67_01471 +1342255 RKLDKWMERVRR +1342288

CINS_1188 vs: N149_1281 in 15-537360 (Campylobacter coli 15-537360, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: Motility accessory factor

Score: 1723.00 bits: 747.06 e-value: 0.000000
length: 613 gaps: 19 id: 372 positives: 448 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL
N149_1281 +1278193 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQIMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQNSRL +1278490

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
+++ TN L+ +DY+ LCS P F FSR YFLEL S YYE++++D+L +N L FKNSI SHGN P D LQGIEQFVYN+P MI+ PSYKELL KRK +
N149_1281 +1278493 MVLSTNKLEIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPKDALQGIEQFVYNLPQMITHPSYKELLSKRKGV +1278790

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDIVFV VVHP +YL+ K ++
N149_1281 +1278793 SDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIVFVCAGVVHPKTIEYLKNKT--FIITQ +1279090

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L+N YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T+AYGG V+TH IWLLFKN E
N149_1281 +1279093 KVLAFPYYINLKNFCYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTIAYGGNGKVETHSIWLLFKNWFENE +1279390

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSI+ C +DF K L + + LS
N149_1281 +1279393 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCQSIEHC----RDFSKILSNDFEKIQSVYLSL +1279690

CINS_1188 +536 NER--LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLI +635
NE+ LN I +D+ K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
N149_1281 +1279693 NEKEEYLNLAIEKIDEFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLK +1279990

CINS_1188 +636 NRGFEKLVEKICK +648
R +K +E++ +
N149_1281 +1279993 ERKLDKWMERVRR +1280029

CINS_1188 vs: N149_1298 in 15-537360 (Campylobacter coli 15-537360, complete genome.)
Gene length: 1923bp / 641aa PV: No
Function: Motility accessory factor

Score: 1663.00 bits: 721.18 e-value: 0.000000
length: 604 gaps: 9 id: 355 positives: 434 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
N149_1298 +1294987 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLQTSSL +1295284

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
N149_1298 +1295287 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +1295584

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKDIVFV VVHP +YL+ K ++ + F +
N149_1298 +1295587 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDIVFVCAGVVHPKTIEYLKNKT--FIITQKILAFPYY +1295884

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
I+L+N YA G SVA MAY+ AT L HKNIIFIGQDLAYAE+G SH KDY N F+ D LAYGG ++ +W +F+ ++ ISRN
N149_1298 +1295887 INLKNFCYAAVGFSVAHMAYEFATHLSHKNIIFIGQDLAYAEDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGDGKAESSEVWTMFRFFLQDTISRN +1296184

CINS_1188 +436 ENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLND +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C D K + + + + + L E LN
N149_1298 +1296187 IISTTYNCTEGGARIEGTIEKPFLWACENLLYKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHCRDFSKILSNDFEKIQSVYLN--LNKKENDLNL +1296484

CINS_1188 +536 MILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVE +635
I +D+ K K+EN K M DLYEIL ++QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E
N149_1298 +1296487 AIRKIDEFKNKLENIKQMQDLYEILSTLLIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWME +1296784

CINS_1188 +636 KICK +639
++ +
N149_1298 +1296787 RVRR +1296796

CINS_1188 vs: N149_1296 in 15-537360 (Campylobacter coli 15-537360, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: Motility accessory factor

Score: 1746.00 bits: 756.98 e-value: 0.000000
length: 605 gaps: 5 id: 362 positives: 445 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +K+ LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
N149_1296 +1291178 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKHLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLQTSSL +1291475

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
N149_1296 +1291478 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGVSDTAIIVS +1291775

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
N149_1296 +1291778 TGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1292075

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES Y+HI T AYGG +KTH +WL+FK +E+ + + +
N149_1296 +1292078 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYKHILTEAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +1292375

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA-NERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C D +F K D + S NE + +
N149_1296 +1292378 DTKVYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHCRDFNDNFIKVYDKIKNSFTSLQNSQKNEIFIQE +1292675

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
N149_1296 +1292678 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1292975

CINS_1188 +636 EKICK +640
E++ +
N149_1296 +1292978 ERVRR +1292990

CINS_1188 vs: AB430_08255 in BFR-CA-9557 (Campylobacter coli strain BFR-CA-9557 genome.)
Gene length: 1923bp / 641aa PV: No
Function: PseD protein

Score: 1671.00 bits: 724.63 e-value: 0.000000
length: 606 gaps: 13 id: 358 positives: 441 coverage: 0.56 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
AB.._08255 +1558482 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLQTSSL +1558779

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ SYKELL KRK +SDTAIIVS
AB.._08255 +1558782 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHSSYKELLSKRKGISDTAIIVS +1559079

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK++IKPDYV LERI +T+EFFNNDFGEFDKDIVFV VVHP +YL+ K ++ + F +
AB.._08255 +1559082 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHDIKPDYVLSLERIPLTSEFFNNDFGEFDKDIVFVCAGVVHPKTIEYLKNKT--FIITQKVLAFPYY +1559379

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
I+L+N YA G SVA MAY+ AT L HKNIIFIGQDLAYA++G SH KDY+N F+ D LAYGG ++ +W +F+ ++ ISRN
AB.._08255 +1559382 INLKNFCYAAVGFSVAHMAYEFATHLSHKNIIFIGQDLAYAKDGFSHTKDYKNLDKHEGHFQRDK-GKFQCLAYGGDGKAESSEVWTMFRFFLQDTISRN +1559679

CINS_1188 +436 ENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERL--L +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + + LS NE+ +
AB.._08255 +1559682 IISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFEKIQSVYLSLNEKEEDI +1559979

CINS_1188 +536 NDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKL +635
N I +D+ K K+EN K M DLYEIL P ++QFELNLA+IYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K
AB.._08255 +1559982 NLAIKKIDEFKNKLENIKQMQDLYEILSPLLIQFELNLAKIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKW +1560279

CINS_1188 +636 VEKICK +641
+E++ +
AB.._08255 +1560282 MERVRR +1560297

CINS_1188 vs: AB430_08325 in BFR-CA-9557 (Campylobacter coli strain BFR-CA-9557 genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1756.00 bits: 761.29 e-value: 0.000000
length: 605 gaps: 5 id: 365 positives: 446 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
AB.._08325 +1571479 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLQTSSL +1571776

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ SYKELL KRK +SDTAIIVS
AB.._08325 +1571779 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHSSYKELLSKRKGISDTAIIVS +1572076

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
AB.._08325 +1572079 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1572376

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH +WL+FK +E+ + + +
AB.._08325 +1572379 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +1572676

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA-NERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C D +F K D + S NE + +
AB.._08325 +1572679 DTKVYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHCRDFNDNFIKVYDKIKNSFTSLQNSQKNEIFIQE +1572976

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
AB.._08325 +1572979 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1573276

CINS_1188 +636 EKICK +640
E++ K
AB.._08325 +1573279 ERVRK +1573291

CINS_1188 vs: AB430_08340 in BFR-CA-9557 (Campylobacter coli strain BFR-CA-9557 genome.)
Gene length: 1782bp / 594aa PV: Yes
Function: PseD protein

Score: 1716.00 bits: 744.04 e-value: 0.000000
length: 589 gaps: 7 id: 359 positives: 437 coverage: 0.60 query coverage 0.56

CINS_1188 +50 LMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPM +149
L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL++++ + L+ +DY LCS P
AB.._08340 +1575355 LLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLENDKLQAQDYTELCSSKPF +1575652

CINS_1188 +150 FNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQ +249
F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSY +LL KRKNLSDTAIIVSTGPSLIKQLPLLK+
AB.._08340 +1575655 FQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYTKLLSKRKNLSDTAIIVSTGPSLIKQLPLLKK +1575952

CINS_1188 +250 YSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPS +349
Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDIVFV VVHP +YL+ K ++ + F +I+L+N YA G S
AB.._08340 +1575955 YANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIVFVCAGVVHPKTIEYLKNKT--FIITQKVLAFPYYINLKNFCYAAVGFS +1576252

CINS_1188 +350 VANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI---SRNENCATYNCTEGGARI +449
VA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T+AYGG V+TH IWLLFKN E + +R TYNCTEGGARI
AB.._08340 +1576255 VAHTLSYLATHLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTIAYGGNGKVETHSIWLLFKNWFENEMIPNTRKMGITTYNCTEGGARI +1576552

CINS_1188 +450 EGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLNDMILHVDKIKIKVENF +549
EG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L E +N I +D+ K K+EN
AB.._08340 +1576555 EGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFENIQSVY--LSLNEKEEDINLAIKKIDEFKNKLENI +1576852

CINS_1188 +550 KTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +638
K M DLYEIL P ++QFELNLA+IYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
AB.._08340 +1576855 KQMQDLYEILSPLLIQFELNLAKIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRR +1577119

CINS_1188 vs: VC76_06695 in FB1 (Campylobacter coli strain FB1, complete genome.)
Gene length: 1965bp / 655aa PV: No
Function: hypothetical protein

Score: 1674.00 bits: 725.92 e-value: 0.000000
length: 601 gaps: 4 id: 358 positives: 448 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL NT+DNTL+Y NT++ELN+ML Y +KY LYPVLYFYGFGNGIL+KALLQN+ H+HI++FEND+E+++ MF++LDFS E+++ +++I DTN++
VC76_06695 +1300065 DNLDINLRNTKDNTLLYINTIDELNSMLEIYNDKYLLYPVLYFYGFGNGILFKALLQNKHHQHIVIFENDIEILWIMFHLLDFSCEIKKNKIIIFDTNEI +1300362

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+DY+ L P F R YFLEL S YYEK D+ +VN NL+ FK ++ +GN P+D LQGIEQFV+N+P M++ SYKEL+ KRKNLS TAIIVS
VC76_06695 +1300365 NIKDYEMLTLTKPFISFLRIYFLELSSSYYEKMNKDIQKVNKNLMEYFKKAMIGYGNDPLDALQGIEQFVHNLPKMLTHSSYKELIKKRKNLSKTAIIVS +1300662

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSLIKQLPLLK+Y KATIFCADSAYPILAK+NIKPDYVCMLER +TAEFFN DF +FDKDIVF+ S++HPNA YLEK + ++IS F F
VC76_06695 +1300665 TGPSLIKQLPLLKKYQNKATIFCADSAYPILAKHNIKPDYVCMLERASLTAEFFNHDFKDFDKDIVFICASLIHPNAITYLEKNNREYILISRFLSFALF +1300962

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNENCA +435
I ++ GY PSVA M+Y +A L HKNIIFIGQDLAYAENGDSHP++YQNS+TFES+ Y+ I+ L YGG VKTH IWLLFK +E+LI
VC76_06695 +1300965 IACHDYGYFDQSPSVAHMSYIIAAKLCHKNIIFIGQDLAYAENGDSHPQEYQNSSTFESNIYQKIECLGYGGKNSVKTHSIWLLFKQIIEQLILDYPYIN +1301262

CINS_1188 +436 TYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQ---KELDSLNKMMNDFLLSANERLLNDM +535
TYNCTEGGA IEG IE+ FK C+ LL +L KPF KL NI KQNEL+LK+Y KI +SIK C++ KK ++++S +N L + +L+ +
VC76_06695 +1301265 TYNCTEGGAWIEGTIEQSFKTTCDKLLLDDLNKPFIKLKKPNIQKQNELMLKSYAKIYKSIKHCIEFKKQTLATIEDIESSYTTLNYLSLEESKEILDIL +1301562

CINS_1188 +536 ILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEK +635
I +D K K+EN M D YEILGP ++QFELNLARIYVLNPKT EDSFNKSVLWIKEHLE I+++ HI AQ+ L KNI LE L RGF+K +++
VC76_06695 +1301565 IQIIDNFKTKLENV-NMVDFYEILGPLLMQFELNLARIYVLNPKTLEDSFNKSVLWIKEHLEFIHMVYGHIEAQENALFKNIIPLEEELKKRGFKKYLQR +1301862

CINS_1188 +636 I +636
I
VC76_06695 +1301865 I +1301865

CINS_1188 vs: AR446_01560 in HC2-48 (Campylobacter coli strain HC2-48, complete genome.)
Gene length: 1832bp / 610aa PV: No
Function: No annotation data

Score: 1489.00 bits: 646.12 e-value: 0.000000
length: 608 gaps: 54 id: 330 positives: 403 coverage: 0.54 query coverage 0.52

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL
AR.._01560 +311260 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNEL------------- +311557

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
Q D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
AR.._01560 +310960 ---------------------------------QSDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +311257

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK++IKPDYVCMLER +I AE FNNDFGEFDKDIVF++KSV HP KYL+K +++S + FI +
AR.._01560 +310660 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHDIKPDYVCMLERDEIVAECFNNDFGEFDKDIVFIVKSVTHPHTIKYLQKNNRAFILVSTYASFIQY +310957

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHID---TLAYGGGYMVKTHFIWLLFKNEMEK---LIS +435
+ L GY G SVA M + L L +KNII IGQDLAYA++G +H + + + D +D T AYGG V++ IW LF+ EK I
AR.._01560 +310360 LKLDYFGYFNMGFSVAHMNFLLTIHLKYKNIILIGQDLAYAKDGQTHSQGFIHANLHNGDYERDLDKFSTTAYGGNGKVQSSEIWTLFRHNFEKDIVNIK +310657

CINS_1188 +436 RNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA-NERL +535
N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + S NE
AR.._01560 +310060 MNYHITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFTSLQNSQKNEIF +310357

CINS_1188 +536 LNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFE +635
+ ++I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +
AR.._01560 +309760 IQEIIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLD +310057

CINS_1188 +636 KLVEKICK +643
K +E++ +
AR.._01560 +309460 KWMERVRR +309481

CINS_1188 vs: AR446_01545 in HC2-48 (Campylobacter coli strain HC2-48, complete genome.)
Gene length: 1228bp / 409aa PV: No
Function: No annotation data

Score: 775.00 bits: 338.12 e-value: 0.000000
length: 267 gaps: 46 id: 166 positives: 192 coverage: 0.64 query coverage 0.41

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL
AR.._01545 +305523 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNEL------------- +305820

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
Q D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
AR.._01545 +305223 ---------------------------------QSDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +305520

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVF +302
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK++IKPDYVCMLER +I AE FNNDFGEFDKDIVF
AR.._01545 +304923 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHDIKPDYVCMLERDEIVAECFNNDFGEFDKDIVF +305121

Score: 229.00 bits: 102.60 e-value: 0.000000
length: 68 gaps: 0 id: 47 positives: 51 coverage: 0.64 query coverage 0.41

CINS_1188 +435 ATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDL +502
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D
AR.._01545 +304851 TTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDF +305052

Score: 218.00 bits: 97.85 e-value: 0.000000
length: 76 gaps: 0 id: 47 positives: 59 coverage: 0.64 query coverage 0.41

CINS_1188 +560 IVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +635
+ QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
AR.._01545 +304649 LTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRR +304874

CINS_1188 vs: ATE51_00894 in OR12 (Campylobacter coli strain OR12, complete genome.)
Gene length: 1945bp / 648aa PV: Yes
Function: hypothetical protein

Score: 1714.00 bits: 743.18 e-value: 0.000000
length: 591 gaps: 11 id: 365 positives: 441 coverage: 0.56 query coverage 0.57

CINS_1188 +50 LMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPM +149
L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL++++ + L+ +DY LCS P
AT.._00894 +455032 LLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLENDKLQAQDYTELCSSKPF +455329

CINS_1188 +150 FNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQ +249
F FSR YFLEL S YYE++++D+L +N L +FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSY +LL KRKNLSDTAIIVSTGPSL KQLPLLK+
AT.._00894 +454732 FQFSRIYFLELMSHYYERFHEDILGLNKKLAETFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYTKLLSKRKNLSDTAIIVSTGPSLTKQLPLLKK +455029

CINS_1188 +250 YSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPS +349
Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDIVFV VVHP +YL+ K ++ + F +I+L+N YA G S
AT.._00894 +454432 YASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIVFVCAGVVHPKTIEYLKNKT--FIITQKVLAFPYYINLKNFCYAAVGFS +454729

CINS_1188 +350 VANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLI---SRNENCATYNCTEGGARI +449
VA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T+AYGG V+TH IWLLFKN E + +R TYNCTEGGARI
AT.._00894 +454132 VAHTLSYLATHLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTIAYGGNGKVETHSIWLLFKNWFENEMIPNTRKMGITTYNCTEGGARI +454429

CINS_1188 +450 EGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKEL-DSLNKMMNDFL-LSANERLLNDMILHVDKIKIKVE +549
EG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C +DF K L + N + N +L L E LN I +D+ K K+E
AT.._00894 +453832 EGTIEKPFLWACENLLYKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHC----RDFSKILSNDFNNIQNIYLNLNKKENDLNLAIRKIDEFKNKLE +454129

CINS_1188 +550 NFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +640
N K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
AT.._00894 +453532 NIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRR +453802

CINS_1188 vs: ATE51_00898 in OR12 (Campylobacter coli strain OR12, complete genome.)
Gene length: 1944bp / 648aa PV: No
Function: hypothetical protein

Score: 1747.00 bits: 757.41 e-value: 0.000000
length: 605 gaps: 5 id: 362 positives: 446 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL+++ T L
AT.._00898 +458908 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQNSRLMVLQTSSL +459205

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI HGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
AT.._00898 +458608 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVFHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +458905

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
AT.._00898 +458308 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +458605

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH +WL+FK +E+ + + +
AT.._00898 +458008 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +458305

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA-NERLLND +535
+ YNCTEGGARI+G IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D +F K D + S NE + +
AT.._00898 +457708 DTKVYNCTEGGARIKGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFNDNFIKVYDKIKNSFTSLQNSQKNEIFIQE +458005

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
AT.._00898 +457408 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +457705

CINS_1188 +636 EKICK +640
E++ +
AT.._00898 +457108 ERVRR +457120

CINS_1188 vs: ATE51_00928 in OR12 (Campylobacter coli strain OR12, complete genome.)
Gene length: 1923bp / 641aa PV: No
Function: hypothetical protein

Score: 1676.00 bits: 726.78 e-value: 0.000000
length: 604 gaps: 9 id: 356 positives: 438 coverage: 0.56 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
AT.._00928 +471904 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLQTSSL +472201

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
AT.._00928 +471604 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +471901

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK++IKPDYV LERI +T+EFFNNDFGEFDKDIVFV VVHP +YL+ K ++ + F +
AT.._00928 +471304 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHDIKPDYVLSLERIPLTSEFFNNDFGEFDKDIVFVCAGVVHPKTIEYLKNKT--FIITQKVLAFPYY +471601

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
I+L+N YA G SVA MAY+ AT L HKNIIFIGQDLAYAE+G SH KDY N F+ D LAYGG ++ +W +F+ ++ ISRN
AT.._00928 +471004 INLKNFCYAAVGFSVAHMAYEFATHLSHKNIIFIGQDLAYAEDGFSHTKDYSNLDKHEGHFQRDK-GKFQCLAYGGDGKAESSEVWTMFRFFLQDTISRN +471301

CINS_1188 +436 ENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLND +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C D K + + + + + L E LN
AT.._00928 +470704 IISTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHCRDFSKILSNDFEKIQSVYLN--LNKKENDLNL +471001

CINS_1188 +536 MILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVE +635
I +D+ K K+EN K M DLYEIL P ++QFELNLA+IYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E
AT.._00928 +470404 AIRKIDEFKNKLENIKQMQDLYEILSPLLIQFELNLAKIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWME +470701

CINS_1188 +636 KICK +639
++ +
AT.._00928 +470104 RVRR +470113

CINS_1188 vs: YSQ_02175 in RM1875 (Campylobacter coli RM1875, complete genome.)
Gene length: 1935bp / 645aa PV: Yes
Function: PseD protein

Score: 1719.00 bits: 745.33 e-value: 0.000000
length: 610 gaps: 17 id: 367 positives: 452 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
YSQ_02175 +444838 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +445135

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++TN L+ +DY+ LCS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN D LQGIEQFVYN+P MI+ PSYKELL KRK +
YSQ_02175 +444538 MVLNTNKLEIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKGI +444835

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDIVF+ VVHP A +YL K +V+
YSQ_02175 +444238 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIVFICAGVVHPKAIEYL--KGRNLVITQ +444535

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA SVA M+Y L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES Y+HI T AYGG +KTH +W+ FK +E +
YSQ_02175 +443938 KVLAFPYYINLKDFSYAAVEFSVAHMSYFLSVLLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYKHILTEAYGGKKEIKTHEVWIFFKQILEAM +444235

CINS_1188 +436 ISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER +535
I + TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C +DF K L + + LS NE+
YSQ_02175 +443638 IIKY-HITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHC----RDFSKILSNNFEKIQSVYLSLNEK +443935

CINS_1188 +536 --LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRG +635
LN I +D+ K K+E+ K M DLYEIL P ++QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
YSQ_02175 +443338 EEYLNLAIEKIDEFKNKLEDIKQMQDLYEILSPLLIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERK +443635

CINS_1188 +636 FEKLVEKICK +645
+K +E++ +
YSQ_02175 +443038 LDKWMERVRR +443065

CINS_1188 vs: YSQ_02185 in RM1875 (Campylobacter coli RM1875, complete genome.)
Gene length: 1953bp / 651aa PV: No
Function: PseD protein

Score: 1762.00 bits: 763.88 e-value: 0.000000
length: 605 gaps: 5 id: 367 positives: 449 coverage: 0.56 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL+++ T L
YSQ_02185 +448647 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQNSRLMVLQTSSL +448944

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++DVL +N L +FK SI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRKNLSDTAIIVS
YSQ_02185 +448347 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAETFKYSILSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKNLSDTAIIVS +448644

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+ KATIFCADSAYPILAK++IKPDYVCMLER + TAEFFN DFGEFD+++ F++KSVVHPNA YL KK ++S + FIN+
YSQ_02185 +448047 TGPSLTKQLPLLKKYANKATIFCADSAYPILAKHDIKPDYVCMLERSEFTAEFFNHDFGEFDREVCFIIKSVVHPNAINYLTKKTDNFTLVSTYASFINY +448344

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ L HKNIIFIGQDLAYA+NG+SHP DYQNSAT+ES +E I T AYGG VKTH +WL+FK +E+ I + +
YSQ_02185 +447747 LKLDHFGYFNMGFSVAHMACYLSLHLKHKNIIFIGQDLAYAKNGNSHPDDYQNSATYESKAHEPILTKAYGGKGEVKTHHVWLMFKQNLEQDIEKIQKYL +448044

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA-NERLLND +535
+ YNCTEGGARI+GAIEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + S NE + +
YSQ_02185 +447447 DTKVYNCTEGGARIKGAIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFTSLQNSQKNEIFIQE +447744

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLA+IYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
YSQ_02185 +447147 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLAKIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +447444

CINS_1188 +636 EKICK +640
E++ K
YSQ_02185 +446847 ERVRK +446859

CINS_1188 vs: YSQ_02255 in RM1875 (Campylobacter coli RM1875, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: PseD protein

Score: 1658.00 bits: 719.02 e-value: 0.000000
length: 614 gaps: 19 id: 358 positives: 444 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
YSQ_02255 +462569 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +462866

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++TN L+ +DY+ LCS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN D LQGIEQFVYN+P MI+ PSYKELL KRK +
YSQ_02255 +462269 MVLNTNKLEIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDSTDTLQGIEQFVYNLPQMITHPSYKELLSKRKGI +462566

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFD+D++FV S V+P KYL+K ++ S
YSQ_02255 +461969 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDQDVLFVCISWVYPQTIKYLQKNNRAFILTS +462266

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+L GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY+N F D LAYGG V++ IW +F+
YSQ_02255 +461669 RPSSFIENINLCPYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYKNLDKHEGHFRRDK-GKFQCLAYGGNGKVESSEIWTMFRFS +461966

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ IS+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C +DF K L + + LS
YSQ_02255 +461369 LQNTISKNIVSTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHC----RDFSKILSNNFEKIQSVYLS +461666

CINS_1188 +536 ANER--LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVL +635
NE+ LN I +D+ K K+E+ K M DLYEIL P ++QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
YSQ_02255 +461069 LNEKEEYLNLAIEKIDEFKNKLEDIKQMQDLYEILSPLLIQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKL +461366

CINS_1188 +636 INRGFEKLVEKICK +649
R +K +E++ +
YSQ_02255 +460769 KERKLDKWMERVRR +460808

CINS_1188 vs: YSS_07230 in RM4661 (Campylobacter coli RM4661, complete genome.)
Gene length: 1953bp / 651aa PV: No
Function: PseD protein

Score: 1756.00 bits: 761.29 e-value: 0.000000
length: 605 gaps: 5 id: 364 positives: 447 coverage: 0.56 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL+++ T L
YSS_07230 +1351720 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQNSRLMVLQTSSL +1352017

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
YSS_07230 +1352020 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGVSDTAIIVS +1352317

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
YSS_07230 +1352320 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +1352617

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH +WL+FK +E+ + + +
YSS_07230 +1352620 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +1352917

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA-NERLLND +535
+ YNCTEGGARI+G IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SI+ C D +F K D + S NE + +
YSS_07230 +1352920 DTKVYNCTEGGARIKGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIEHCRDFNDNFIKVYDKIKNSFTSLQNSQKNEIFIQE +1353217

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +
YSS_07230 +1353220 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWM +1353517

CINS_1188 +636 EKICK +640
E++ +
YSS_07230 +1353520 ERVRR +1353532

CINS_1188 vs: YSS_07245 in RM4661 (Campylobacter coli RM4661, complete genome.)
Gene length: 1542bp / 514aa PV: No
Function: hypothetical protein

Score: 1149.00 bits: 499.45 e-value: 0.000000
length: 579 gaps: 21 id: 278 positives: 366 coverage: 0.54 query coverage 0.44

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDIN++ ++ MY++ ++EL L Y + + YPVL+FYGFGNGILYK LLQNQ K II+FE +LELI+ +DFSK+L RL+I+ +D+
YSS_07245 +1357472 DNLDINIIKKRNLKKMYQDPIKELEKNL-EYFKDFTRYPVLFFYGFGNGILYKILLQNQALKRIIIFEKELELIFLALNFIDFSKDLSLGRLIILHHDDI +1357769

CINS_1188 +136 KRRDYDYLCSNDPMFN-----FSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDT +235
L D +F F R+Y L + ++YE Y++D+L++N + KN GN P D +QGIEQFVYN+P MI+ PSYKELL KRK +SDT
YSS_07245 +1357772 N------LPKMDKVFRLIGDLFYRSYNLHIANDFYEHYKEDILKLNKLNMQIIKNHNLMRGNDPKDAMQGIEQFVYNLPQMITHPSYKELLSKRKGISDT +1358069

CINS_1188 +236 AIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENS +335
AIIVSTGPSL KQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +I AE FNNDF +FDKDI+F++ S+VH YLEK Q K ++I +
YSS_07245 +1358072 AIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLEKNQRKYILIIKGQ +1358369

CINS_1188 +336 HFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHID---TLAYGGGYMVKTHFIWLLFKNEMEKL +435
F + L N GY G SV+ MAY+LA NL HKNII IGQDLAYA++G +H + + + D +D T AYGG V++ IW LF+ E
YSS_07245 +1358372 PFARCLGLDNYGYINGGMSVSHMAYELAENLGHKNIILIGQDLAYAKDGQTHSQGFIHANLHNGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENF +1358669

CINS_1188 +436 ISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER +535
I+ + TYNCT+GGARIE AIEKPFKE+CE LL K F KL LN +Q +L LK Y Q IKK ++L +F+KE + K + + N+
YSS_07245 +1358672 IAFSKS-KTYNCTQGGARIESAIEKPFKELCEDLLKNKKDKKFKKLQVLNTKEQVKLGLKIY----QKIKKNMNLSLNFKKECKKVQKQIHNLTHGKNKL +1358969

CINS_1188 +536 LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQ +614
L + +DKIK K+ N K + L EILGPT+ + + L +Y+ + K D NK WI H ++ II + AQ
YSS_07245 +1358972 SLEQINQNIDKIKEKLSNKKYLF-LQEILGPTLHHEQSILTPLYLKDIKDDSDKQNKLFAWIYAHESLMENIIELLEAQ +1359206

CINS_1188 vs: YSS_07160 in RM4661 (Campylobacter coli RM4661, complete genome.)
Gene length: 1953bp / 651aa PV: Yes
Function: PseD protein

Score: 1667.00 bits: 722.90 e-value: 0.000000
length: 614 gaps: 19 id: 361 positives: 443 coverage: 0.55 query coverage 0.57

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
YSS_07160 +1339369 DNLDINLKDTSIKNNGGGYSENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQNARL +1339666

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++ + L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
YSS_07160 +1339669 MVLENDKLQAQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +1339966

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKDI+FV S V+P KYL+K ++ S
YSS_07160 +1339969 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFVCISWVYPQTIKYLQKNNRAFILTS +1340266

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQN----SATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNE +435
S FI I+L GY GPSVA MAY+ AT LN+KNIIFIGQDLAYA++G SH KDY+N F+ D LAYGG V++ IW +F+
YSS_07160 +1340269 RPSSFIENINLCPYGYVGYGPSVAHMAYEFATHLNYKNIIFIGQDLAYAKDGFSHTKDYKNLDKHEGHFQRDK-GKFQCLAYGGNGKVESSGIWTMFRFS +1340566

CINS_1188 +436 MEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLS +535
++ IS+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C +DF K L + + LS
YSS_07160 +1340569 LQNTISKNIVSTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHC----RDFNKILSNDFEKIQSIYLS +1340866

CINS_1188 +536 ANERL--LNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVL +635
NE+ +N I +D+ K K+EN K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L
YSS_07160 +1340869 LNEKEEDINLAIEKIDEFKNKLENIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKL +1341166

CINS_1188 +636 INRGFEKLVEKICK +649
R +K +E++ +
YSS_07160 +1341169 KERKLDKWMERVRR +1341208

CINS_1188 vs: YSS_07240 in RM4661 (Campylobacter coli RM4661, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: PseD protein

Score: 1718.00 bits: 744.90 e-value: 0.000000
length: 611 gaps: 15 id: 367 positives: 443 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL
YSS_07240 +1355529 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQNARL +1355826

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++ + L+ +DY LCS P F FSR YFLEL S YYE++++DVL +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRKNL
YSS_07240 +1355829 MVLENDKLQTQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKNL +1356126

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER ++TAEFFN DFGEFDKDIVF+ VVHP A +YL K +V+
YSS_07240 +1356129 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFICAGVVHPKAIEYL--KGRNLVITQ +1356426

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
YSS_07240 +1356429 KVLAFPYYINLKDFSYAAVGLSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +1356726

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K + + + + L
YSS_07240 +1356729 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILSNDFEKIQSVY--LGLNE +1357026

CINS_1188 +536 NERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINR +635
E +N I +D+ K K+EN K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R
YSS_07240 +1357029 KEEDINLAIEKIDEFKNKLENIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKER +1357326

CINS_1188 +636 GFEKLVEKICK +646
+K +E++ +
YSS_07240 +1357329 KLDKWMERVRR +1357359

CINS_1188 vs: YSU_02220 in RM5611 (Campylobacter coli RM5611, complete genome.)
Gene length: 1958bp / 652aa PV: No
Function: No annotation data

Score: 840.00 bits: 366.16 e-value: 0.000000
length: 242 gaps: 0 id: 166 positives: 199 coverage: 0.54 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
YSU_02220 +454717 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLQTSSL +455014

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRKNLSDTAIIVS
YSU_02220 +454417 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKNLSDTAIIVS +454714

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVC +277
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK++IKPDY C
YSU_02220 +454117 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHDIKPDYAC +454240

Score: 821.00 bits: 357.97 e-value: 0.000000
length: 368 gaps: 8 id: 187 positives: 235 coverage: 0.54 query coverage 0.56

CINS_1188 +276 VCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAY +375
+CMLER +I AE FNNDFGEFDKDIVF++KSV HP KYL+K +++S + FI ++ L GY G SVA M + L L +KNII IGQDLAY
YSU_02220 +454001 LCMLERDEIVAECFNNDFGEFDKDIVFIVKSVTHPHTIKYLQKNNRAFILVSTYASFIQYLKLDYFGYFNMGFSVAHMNFLLTIHLKYKNIILIGQDLAY +454298

CINS_1188 +376 AENGDSHPKDYQNSATFESDTYEHID---TLAYGGGYMVKTHFIWLLFKNEMEK---LISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKP +475
A++G +H + + + D +D T AYGG V++ IW LF+ EK I N TYNCTEGGARIEG IEKPF CE LL K+L KP
YSU_02220 +453701 AKDGQTHSQGFIHANLHNGDYERDLDKFSTTAYGGNGKVQSSEIWTLFRHNFEKDIVNIKMNYHITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKP +453998

CINS_1188 +476 FAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA-NERLLNDMILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNL +575
F KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + S NE + ++I +DK K ++ E + T DL +ILGP + QFELNL
YSU_02220 +453401 FEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFTSLQNSQKNEIFIQEIIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNL +453698

CINS_1188 +576 ARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +643
ARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ K
YSU_02220 +453101 ARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRK +453302

CINS_1188 vs: YSU_02270 in RM5611 (Campylobacter coli RM5611, complete genome.)
Gene length: 1947bp / 649aa PV: Yes
Function: PseD protein

Score: 1728.00 bits: 749.22 e-value: 0.000000
length: 613 gaps: 19 id: 371 positives: 450 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
YSU_02270 +464862 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSHELQSARL +465159

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++TN L+ +DY+ LCS P F FSR YFLEL S YYE++++D+L +N L +FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
YSU_02270 +464562 MVLNTNKLEIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAETFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +464859

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVIS +335
SDTAIIVSTGPSLIKQLPLLK+Y+ KATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFNNDFGEFDKDI+F+ VVHP A +YL K +V+
YSU_02270 +464262 SDTAIIVSTGPSLIKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNNDFGEFDKDIIFICAGVVHPKAIEYL--KGRNLVITQ +464559

CINS_1188 +336 ENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
+ F +I+L++ YA G SVA LAT L HKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG V+TH IWLLFKN E
YSU_02270 +463962 KVLAFPYYINLKDFSYAAVGLSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTTAYGGNGKVETHSIWLLFKNWFENE +464259

CINS_1188 +436 I---SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA +535
+ +R TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C +DF K L + + LS
YSU_02270 +463662 MIPNTRKMGITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC----RDFSKILSNDFEKIQSIYLSL +463959

CINS_1188 +536 NERL--LNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLI +635
NE+ +N I +DK K K+E+ K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHL+ ++L+ HI AQ+ LIKNI LE L
YSU_02270 +463362 NEKEEDINLAIEKIDKFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLKFMELVYGHIKAQESALIKNILPLEEKLK +463659

CINS_1188 +636 NRGFEKLVEKICK +648
R +K +E++ +
YSU_02270 +463062 ERKLDKWMERVRR +463098

CINS_1188 vs: YSU_02210 in RM5611 (Campylobacter coli RM5611, complete genome.)
Gene length: 1917bp / 639aa PV: No
Function: PseD protein

Score: 1767.00 bits: 766.04 e-value: 0.000000
length: 602 gaps: 7 id: 373 positives: 448 coverage: 0.58 query coverage 0.59

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL+++ T L
YSU_02210 +450903 DNLDINLKDTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSNELQSARLMVLQTSSL +451200

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++D+L +N L FKNSI S+GN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
YSU_02210 +450603 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGISDTAIIVS +450900

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFDKDIVFV VVHP A +YL+ + K ++I +F +
YSU_02210 +450303 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDKDIVFVCAGVVHPKAIEYLKGRNRKYLIIPRYLYFPIY +450600

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNENCA +435
I L+ + Y PSVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH +W+ FK +E +I +
YSU_02210 +450003 IKLKYFDFLYNTPSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKKEIKTHEVWIFFKQILEAMIIKY-HIT +450300

CINS_1188 +436 TYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKEL-DSLNKMMNDFL-LSANERLLNDMI +535
TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ +SIK C +DF K L + N + N +L L E LN I
YSU_02210 +449703 TYNCTEGGARIEGTIEKPFLWACENLLHKDLNKPFEKLEPLSLNKQNEFLLKAYYKVCKSIKHC----RDFSKILSNDFNNIQNIYLNLNKKENDLNLAI +450000

CINS_1188 +536 LHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKI +635
+D+ K K+EN K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++
YSU_02210 +449403 RKIDEFKNKLENIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERV +449700

CINS_1188 +636 CK +637
+
YSU_02210 +449103 RR +449106

CINS_1188 vs: A6K30_02235 in YH501 (Campylobacter coli strain YH501, complete genome.)
Gene length: 1766bp / 588aa PV: Yes
Function: PseD protein

Score: 914.00 bits: 398.08 e-value: 0.000000
length: 277 gaps: 8 id: 186 positives: 226 coverage: 0.59 query coverage 0.54

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ ARL
A6.._02235 +452989 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARL +453286

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++TN L+ +DY+ LCS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +
A6.._02235 +452689 MVLNTNKLEIQDYNELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGI +452986

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVL +312
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYV LERI +T+EFFNNDFGEFDKDI+F L
A6.._02235 +452389 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFDL +452617

Score: 613.00 bits: 268.24 e-value: 0.000000
length: 345 gaps: 26 id: 159 positives: 203 coverage: 0.59 query coverage 0.54

CINS_1188 +308 VHPNAFKYLEKKQTKIVV--ISENSHFINFIDLQNLGYAYSG------PSVANMAYKL-ATNLNHKNIIFI--------GQDLAYAENGDSHPKDYQNSA +407
V+P KYL+K + + ++ S S FI I + +A+ NMAY+ LN+KN F+ D Y ++ +HP DYQ
A6.._02235 +452144 VYPQTIKYLQKNKIEHILYYTSRPSSFIETISI----FAHMAM*VKWAKCCYNMAYEFDIRHLNYKNYSFL*DRI*LMQKMDFPYTKDYKTHPDDYQHEG +452441

CINS_1188 +408 TFESDTYEHIDTLAYGGGYMVKTHFIW-LLFKNEMEKLISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAY +507
F+ D EHI LAYGG V++ I + ++ IS+N TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY
A6.._02235 +451844 HFQRDKGEHIQCLAYGGNGKVESSGILDYVLDLSLQNTISKNIVSTTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAY +452141

CINS_1188 +508 CKINQSIKKCVDLKKDFQKELDSLNKMMNDFL-LSANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLW +607
K+ +SIK C D K + + K+ N +L L E LN I +D+ K K+EN K M DLYEIL P QFELNLARIYVLNPKTKED+FNKS+LW
A6.._02235 +451544 YKVCKSIKHCRDFNKILSNDFE---KIQNIYLNLNKKENDLNLAIRKIDEFKNKLENIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDAFNKSILW +451841

CINS_1188 +608 IKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKI +652
IKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++
A6.._02235 +451244 IKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERV +451376

CINS_1188 vs: A6K30_02165 in YH501 (Campylobacter coli strain YH501, complete genome.)
Gene length: 1941bp / 647aa PV: No
Function: PseD protein

Score: 1769.00 bits: 766.90 e-value: 0.000000
length: 605 gaps: 5 id: 367 positives: 446 coverage: 0.57 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINL +T DNT +YEN ++ELN+MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ MF+ILDFS EL+ +RL+++ T L
A6.._02165 +440611 DNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWIMFHILDFSSELQNSRLMVLQTSSL +440908

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ CS P F FSR YFLEL S YYE++++DVL +N L FKNSI SHGN P+D LQGIEQFVYN+P MI+ PSYKELL KRK +SDTAIIVS
A6.._02165 +440311 DIEFFSNFCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKGVSDTAIIVS +440608

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYVCMLER +ITAEFFN DFGEFD I F++KS+VHPNA YL KK ++S + FI +
A6.._02165 +440011 TGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVCMLERTEITAEFFNHDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQY +440308

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE--- +435
+ L GY G SVA MA L+ LNHKNIIFIGQDLAYAENG+SHP DYQNSA +ES YEHI T AYGG +KTH +WL+FK +E+ + + +
A6.._02165 +439711 LKLDYFGYFNMGFSVAHMACYLSLHLNHKNIIFIGQDLAYAENGNSHPDDYQNSANYESQMYEHILTEAYGGKEKIKTHHVWLMFKRNLEQDVQKIQKYL +440008

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSA-NERLLND +535
+ YNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D +F K D + S NE + +
A6.._02165 +439411 DTKIYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFNDNFIKVYDKIKNSFTSLQNSQKNEIFIQE +439708

CINS_1188 +536 MILHVDKIKIKV-ENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLV +635
+I +DK K ++ E + T DL +ILGP + QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K
A6.._02165 +439111 IIQDIDKTKTQIDELYNTQKDLIQILGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWT +439408

CINS_1188 +636 EKICK +640
E++ +
A6.._02165 +438811 ERVRR +438823

CINS_1188 vs: A6K30_02155 in YH501 (Campylobacter coli strain YH501, complete genome.)
Gene length: 1977bp / 659aa PV: Yes
Function: PseD protein

Score: 794.00 bits: 346.32 e-value: 0.000000
length: 262 gaps: 8 id: 163 positives: 203 coverage: 0.56 query coverage 0.58

CINS_1188 +36 DNLDINLLNTQ--------DNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARL +135
DNLDINL +T + L+Y++ ++EL MLN Y +KY LYPVLYFYGFGNGIL+KALLQN+NH+HI+VFE D+E+I+ +F+ILDFS EL+ ARL
A6.._02155 +436802 DNLDINLKDTSIKNNGGGYNENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQNARL +437099

CINS_1188 +136 VIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNL +235
++++ + L+ +DY LCS P F FSR YFLEL S YYE++++DVL +N L FKN I GN P+D LQGIEQFVYN+P MI+ PSYKELL KRKNL
A6.._02155 +436502 MVLENDKLQTQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNIILRNGNDPLDALQGIEQFVYNLPQMITHPSYKELLSKRKNL +436799

CINS_1188 +236 SDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFF +297
SDTAIIVSTGPSL KQLPLLK+Y+SKATIFCADS+YPILAK+ IKPDYV + + I + F
A6.._02155 +436202 SDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPILAKHGIKPDYVLYVGKN*INSRVF +436385

Score: 263.00 bits: 117.27 e-value: 0.000000
length: 167 gaps: 27 id: 80 positives: 100 coverage: 0.56 query coverage 0.58

CINS_1188 +277 CMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLE-------KKQTKIVVISENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFI +376
CMLER ++TAEFFN DFGEFDKDIVF+ VVHP A +YL+ K + ++ I I F+ + G +++Y LAT L HKNIIFI
A6.._02155 +436054 CMLERTELTAEFFNHDFGEFDKDIVFICAGVVHPKAIEYLKG*KFSHNSKSSMLLSILYTILKI*FLCML*HGLK---CCTYDLSY-LATYLSHKNIIFI +436351

CINS_1188 +377 GQDLAYAENGDSHPKDYQNSATFESDTYEHID-----TLAYGGGYMVKTH----FI---WLLFKNEM +443
GQDLAYAENG+SHP DYQNSA +E + +ID AYGG V++ FI W F+NEM
A6.._02155 +435754 GQDLAYAENGNSHPDDYQNSANYER--HFQIDMNIF*RTAYGGNGKVESS*YMAFI*TNW--FENEM +435952

Score: 301.00 bits: 133.66 e-value: 0.000000
length: 152 gaps: 6 id: 76 positives: 91 coverage: 0.56 query coverage 0.58

CINS_1188 +411 VKTHFIWLLFKNEMEKL----ISRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDF +510
+K H IWLLFK K+ I + TYNCTEGGARIEG IEKPF CE LL K+L KPF KL+ L +NKQNE LLKAY K+ QSIK C D K
A6.._02155 +435633 LKAHSIWLLFKLIGLKMK*FQILEKWDITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKIL +435930

CINS_1188 +511 QKELDSLNKMMNDFLLSANERLLNDMILHVDKIKIKVENFKTMNDLYEILGP +562
+ + + + L E +N I +D+ K K+EN K M DLYEIL P
A6.._02155 +435333 SNDFEKIQSVY--LGLNEKEEDINLAIEKIDEFKNKLENIKQMQDLYEILQP +435486

Score: 221.00 bits: 99.15 e-value: 0.000000
length: 76 gaps: 0 id: 47 positives: 60 coverage: 0.56 query coverage 0.58

CINS_1188 +560 IVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +635
++QFELNLARIYVLNPKTKED+FNKS+LWIKEHLE ++L+ HI AQ+ LIKNI LE L R +K +E++ +
A6.._02155 +435179 VLQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLDKWMERVRR +435404

CINS_1188 vs: CONCH_0163 in LMG 11760 (Campylobacter lari subsp. concheus LMG 11760, complete genome.)
Gene length: 1911bp / 637aa PV: Yes
Function: motility accessory factor

Score: 1461.00 bits: 634.04 e-value: 0.000000
length: 605 gaps: 21 id: 338 positives: 411 coverage: 0.53 query coverage 0.53

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
D LDIN + +Y NTL EL+ L Y +KY LYPVLYFYGFGNGILYKALLQN+N + I+VFE +LE IY F+ +DFS+EL+ L+++D+N L
CONCH_0163 +145002 DPLDINFIHNGGGYTLYNNTLNELDEKLKLYNDKYLLYPVLYFYGFGNGILYKALLQNKNRQKIVVFEKELEFIYLSFHYVDFSEELKNNSLIVLDSNSL +145299

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
+ D L +P FNF R YFL+L NYYEKYQ D+L++N L K I S GNS D LQGIE FVYN+P +ISN S+ ELL KRKN +TAIIVS
CONCH_0163 +144702 QPIDIQILFFSNPFFNFLRIYFLDLNCNYYEKYQKDILKLNTKLQEHIKQIILSNGNSSQDALQGIENFVYNLPDIISNYSFNELLLKRKNQVNTAIIVS +144999

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFINF +335
TGPSLIKQLPLLKQY+ A+IFCADSAYPILAKYNIKPDYV LER+ T+EFFNNDFGEF+KDIVF+L VVH +L +T V + S F +
CONCH_0163 +144402 TGPSLIKQLPLLKQYANYASIFCADSAYPILAKYNIKPDYVLSLERVVETSEFFNNDFGEFNKDIVFILSNVVHKKTISFLNNYKT--VFLQRSSGFTRY +144699

CINS_1188 +336 IDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTY--EHID----TLAYGGGYMVKTHFIWLLFKNEMEKLIS +435
+ L+ G +S PSVA MAY L NLN KNIIFIGQDLAYA++G SHP++Y + DTY + ID TLAY G + VKT WLLFK +E IS
CONCH_0163 +144102 LSLKKFGNLHSSPSVAIMAYFLTLNLNFKNIIFIGQDLAYADDGSSHPEEYYYG---KYDTYNPQEIDYSLTTLAYNGNHHVKTNETWLLFKQMLEFFIS +144399

CINS_1188 +436 RNE-NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERL +535
+ N ATYNCTEGGARI+ IEKPFK+ C+ LL++ + KPFAKL+ LN NKQ EL+LK++ KI Q IK C L K+ + LN ++ND E+
CONCH_0163 +143802 SSKVNIATYNCTEGGARIDHTIEKPFKQTCKELLTEEIKKPFAKLEKLNENKQKELMLKSFYKIHQVIKLCDSLHKECIYLSNRLNFLIND------EKN +144099

CINS_1188 +536 LNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEK +635
+I +D K K F+ +N L E+L P QFELNLARIYVLNPKTKED FNK LWIKEHLEW++LII HI + L KNI LE L NR +K
CONCH_0163 +143502 FSSIIKELDHFKNK---FEKINFLNELLNPLNTQFELNLARIYVLNPKTKEDVFNKNYLWIKEHLEWLELIIGHIKKLQESLEKNIINLERELENRHLQK +143799

CINS_1188 +636 LVEKI +640
+ KI
CONCH_0163 +143202 QITKI +143214

CINS_1188 vs: CSUB8521_0178 in LMG 24374 (Campylobacter subantarcticus LMG 24374, complete genome.)
Gene length: 1929bp / 643aa PV: Yes
Function: motility accessory factor

Score: 1438.00 bits: 624.12 e-value: 0.000000
length: 643 gaps: 22 id: 338 positives: 437 coverage: 0.53 query coverage 0.53

CINS_1188 +2 NMFAKNIQALLNPHlkqkllqiqkqnkfqiiqgkDNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIV +101
N+F KN QAL N LK+KLL+ +++N + D LDIN + +Y N+L ELN LN Y +KY LYPVLYFYGFGNGILYKALLQN+N + I+V
CS..1_0178 +160056 NIFEKNTQALQNTKLKEKLLHFKQRNFQILQGS-DPLDINFIHNGGGYTLYNNSLSELNEKLNLYNDKYLLYPVLYFYGFGNGILYKALLQNKNRQKIVV +160353

CINS_1188 +102 FENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGI +201
FE +LELIY F++LDFS+EL+ L+I+DT + Y+ LCS P FNF R YFL+LH +YYE+YQ+D+L+ N N+ K +I + GNS D L GI
CS..1_0178 +159756 FEKELELIYLSFHLLDFSEELKNGALIILDTSLVDINIYNELCSTSPFFNFLRVYFLDLHCDYYERYQEDILKTNQNMQKYIKQTILTKGNSSQDALMGI +160053

CINS_1188 +202 EQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIV +301
E ++YN+P +ISN S+KELL KRKN S AIIVSTGPSLIKQLPLLKQY+ KA+IFCADSAYPILAK++IKPDYV LER+ T+EFFNNDFG+FDKDI+
CS..1_0178 +159456 ENYIYNLPDIISNFSFKELLLKRKNSSKYAIIVSTGPSLIKQLPLLKQYANKASIFCADSAYPILAKHDIKPDYVLSLERVKETSEFFNNDFGKFDKDII +159753

CINS_1188 +302 FVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTY--EH +401
FVL SV+HPN YL K + K + + + +L+ Y PSVANMAY +A L++K+IIFIGQDLAYA +G SHPK+Y+ + DTY +
CS..1_0178 +159156 FVLTSVIHPNTITYLRKNRRKFMFVQRLLSLDKYFNLKHFEYLIGCPSVANMAYFIAMKLDYKDIIFIGQDLAYANDGSSHPKEYHYG---KYDTYNPQE +159453

CINS_1188 +402 ID----TLAYGGGYMVKTHFIWLLFKNEMEKLISRNENC---ATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKI +501
ID L+YGG + T W++FK E+EK +S +N TYNCTEGGARIEG IEKPFK+ICE LL K +K F KL+ LN KQ EL+LK++ K
CS..1_0178 +158856 IDYGLKILSYGGAKFISTTSTWIMFKTELEKKLSYAKNVLDITTYNCTEGGARIEGTIEKPFKQICEELLIKEPQKHFTKLEKLNSAKQIELMLKSFYKT +159153

CINS_1188 +502 NQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEH +601
++IK C L+K+ ++L + ND E ++I ++D K K+ N + + + L QFELNLARIYVLNPK KED+FNK++LWIKEH
CS..1_0178 +158556 RKAIKICEYLEKECAFISNTLHFLSND------ENNFKNIIEQLDTFKEKINNELILRSVIDSLN---TQFELNLARIYVLNPKAKEDAFNKTLLWIKEH +158853

CINS_1188 +602 LEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +644
LEWI ++ H A K+ L KNI LE L N+ + ++KI K
CS..1_0178 +158256 LEWILMLNDHSKALKITLEKNIINLEKELENQNLHQYIQKIKK +158382

CINS_1188 vs: CSUB8521_1411 in LMG 24374 (Campylobacter subantarcticus LMG 24374, complete genome.)
Gene length: 1425bp / 475aa PV: Yes
Function: putative motility accessory factor

Score: 1325.00 bits: 575.38 e-value: 0.000000
length: 437 gaps: 5 id: 277 positives: 336 coverage: 0.58 query coverage 0.44

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDIN+++ L Y+ LEELN LN Y +KY LYPVL+FYGFGNGILYKALLQN NHK I+VFE D+ +IY +F+++DFSKEL+E +L++I+ +L
CS..1_1411 +1403307 DNLDINIIDGGGYRL-YDKPLEELNKTLNLYNDKYLLYPVLFFYGFGNGILYKALLQNPNHKIILVFEPDVNIIYTIFKVIDFSKELKENKLLLINPKNL +1403604

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYE-KYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIV +235
+ LCSN+ MFNF RTYFLE+H +YY+ KYQ+++L++N + ++ + SIFSHGNSP+D LQGI++F+ NIP MI+ SYKELLNKRKNLSDTAIIV
CS..1_1411 +1403007 NQYSLKTLCSNNYMFNFLRTYFLEIHCDYYDSKYQEEILKLNSLIQDAIRESIFSHGNSPVDYLQGIKHFIQNIPKMIAHSSYKELLNKRKNLSDTAIIV +1403304

CINS_1188 +236 STGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQ---TKIVVISENSH +335
STGPSL KQL LLKQY KA+IFCADSAYPILAK NIK DYV LER D T+EFFN DFGEFDKDI+F++KSVVHPN KYLEKK+ + S S
CS..1_1411 +1402707 STGPSLTKQLSLLKQYQNKASIFCADSAYPILAKANIKSDYVFSLERTDFTSEFFNHDFGEFDKDILFIVKSVVHPNTIKYLEKKKFYGGNYTIFSNPSN +1403004

CINS_1188 +336 FINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRN +435
FI + L GY G SVA MAY LAT L HKNI+ IGQDLAY + G+SHPKDYQNS+TFE+DTYEHIDT+AYG MVKTH IWL FK +E LI+ N
CS..1_1411 +1402407 FIVNVKLNHFGYFGMGHSVAHMAYTLATYLKHKNIVLIGQDLAYNDIGESHPKDYQNSSTFETDTYEHIDTIAYGAKGMVKTHCIWLWFKSTLENLIATN +1402704

CINS_1188 +436 ENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHK +472
+ TYNCTEGGARI G IE+PFK++CE LL K +
CS..1_1411 +1402107 KFSITYNCTEGGARINGTIEEPFKQVCEKLLKKRFEQ +1402215

CINS_1188 vs: CSUB8521_0235 in LMG 24374 (Campylobacter subantarcticus LMG 24374, complete genome.)
Gene length: 1926bp / 642aa PV: Yes
Function: putative motility accessory factor

Score: 1517.00 bits: 658.20 e-value: 0.000000
length: 608 gaps: 20 id: 340 positives: 426 coverage: 0.53 query coverage 0.53

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
D LDIN + +Y N+L ELN LN Y +KY LYPVLYFYGFGNGILYKALLQN+N + I+VFE +LELIY F++LDFS+EL+ L+I+DT +
CS..1_0235 +207196 DPLDINFIHNGGGYTLYNNSLSELNEKLNLYNDKYLLYPVLYFYGFGNGILYKALLQNKNRQKIVVFEKELELIYLSFHLLDFSEELKNGALIILDTSLV +207493

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
Y+ LCS P FNF R YFL+LH +YYE+YQ+D+L N N+ K +I S GNS D L GIE ++YN+P +ISN S+KELL KRKN S AIIVS
CS..1_0235 +206896 DINIYNELCSTSPFFNFLRVYFLDLHCDYYERYQEDILTTNQNMQKYIKQAILSKGNSSQDALMGIENYIYNLPDIISNFSFKELLLKRKNSSKYAIIVS +207193

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEK-KQTKIVVISENSHFIN +335
TGPSLIKQLPLLKQY+ KA+IFCADSAYPILAK++IKPDYV LER+D T+EFFNNDFG+FDKDIVFVLKS+VHP FKYL+K +Q I IS+ F
CS..1_0235 +206596 TGPSLIKQLPLLKQYANKASIFCADSAYPILAKHDIKPDYVLSLERVDFTSEFFNNDFGDFDKDIVFVLKSLVHPSTFKYLKKTQQPHIGTISDVRPFAY +206893

CINS_1188 +336 FIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTY--EHID----TLAYGGGYMVKTHFIWLLFKNEMEKLI +435
++ L++ GY G SVA MAY LA L HKNIIFIGQDLAYA++G SHPK+Y+ + DTY + ID + YGG + VKT W+LFK ++E +I
CS..1_0235 +206296 YLALKDFGYMEMGSSVATMAYILALKLEHKNIIFIGQDLAYAKDGSSHPKEYHYG---KYDTYNPQEIDYSLTAIGYGGTHYVKTSETWMLFKTQLENII +206593

CINS_1188 +436 -SRNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANER +535
+ +TYN TEGGARIEG IEKPFK+ICE LL+K L KPF KL+ LN NKQ EL+LKA+ K+ + IK C L+K+ ++LN + ND E
CS..1_0235 +205996 LNSKQHTSTYNATEGGARIEGTIEKPFKQICEELLTKKLKKPFVKLEKLNQNKQKELMLKAFYKVHKVIKICNILEKECLHIYNTLNFLSND------ET +206293

CINS_1188 +536 LLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFE +635
+I ++D K K+E + E++ P QFELNLARIYVLNPKTKED+FNK++LWIKEHLEWI ++ H A K+ L KNI L L N+
CS..1_0235 +205696 NFKKIIEQLDHFKSKIEKILILK---ELIDPLNTQFELNLARIYVLNPKTKEDAFNKTLLWIKEHLEWILMLNDHSKALKITLEKNIINLAKELENQNLH +205993

CINS_1188 +636 KLVEKICK +643
+ ++KI K
CS..1_0235 +205396 QYIQKIKK +205417

CINS_1188 vs: CSUB8523_1511 in LMG 24377 (Campylobacter subantarcticus LMG 24377, complete genome.)
Gene length: 1923bp / 641aa PV: Yes
Function: putative motility accessory factor

Score: 1603.00 bits: 695.29 e-value: 0.000000
length: 604 gaps: 13 id: 356 positives: 442 coverage: 0.56 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDIN+++ L Y+ LEELN LN Y +KY LYPVL+FYGFGNGILYKALLQN NHK I+VFE D+ +IY MF+++DFSKEL+E RL+++D N+
CS..3_1511 +1479932 DNLDINIIDGGGYRL-YDKPLEELNKTLNLYNDKYLLYPVLFFYGFGNGILYKALLQNLNHKIILVFEPDVNIIYTMFKMIDFSKELKENRLLLLDPNNE +1480229

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYE-KYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIV +235
D L N+ +FNF RTYFLE+H +YY+ KYQ+++L++N + ++ K I S G+ P+D LQGI++F+ NIP MI+NPSYKELLNKRKNLS+TAIIV
CS..3_1511 +1479632 NINDLKNLFLNNLIFNFLRTYFLEIHCDYYDDKYQEEILKLNSLIQDAIKENIISIGDDPLDTLQGIKHFIQNIPKMIANPSYKELLNKRKNLSETAIIV +1479929

CINS_1188 +236 STGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFIN +335
STGPSL KQL LLKQY KA+IFCADSAYPILAK NIKPDYV LER D T+EFFN DFGEFDKDI+FV+KSV HPN KYLEK + K +++S +F
CS..3_1511 +1479332 STGPSLTKQLSLLKQYQNKASIFCADSAYPILAKANIKPDYVFSLERTDFTSEFFNHDFGEFDKDILFVIKSVTHPNTIKYLEKNKRKYMIVSTPEYFFK +1479629

CINS_1188 +336 FIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEK--LISRNE +435
+ L + GY G SVA MA L+ L H NIIFIGQDLAY + G+SHPKDYQNS+TFE+DTYEHID L YGG VKTH W+ FK +E L
CS..3_1511 +1479032 YCSLNDFGYFNMGWSVAHMACYLSVHLKHSNIIFIGQDLAYNDIGESHPKDYQNSSTFETDTYEHIDVLGYGGIGYVKTHKTWIFFKKILENDILTFNKM +1479329

CINS_1188 +436 NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNK--MMNDFLLSANERLLN +535
N YNCTEGGARI G IE+PFK++CE LL K+L KPF KL+ LN+NKQNELLLKAY KI +SI++ +LKK+ + S+NK + D L N +
CS..3_1511 +1478732 NIKIYNCTEGGARINGTIEEPFKQVCEKLLKKDLNKPFIKLENLNLNKQNELLLKAYFKIIKSIRQYENLKKELCERNISINKNLLHIDNLDIQNSIHMF +1479029

CINS_1188 +536 DMIL-HVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKL +635
+ IL ++D IK + +N GP I QFELNLARIYVLNPKT+EDS+NKS+LWIKEHL+WI+LIIAHI++QK L + + + LI +GF L
CS..3_1511 +1478432 EFILKQIDAIKTSIYRCGLLN------GPLIRQFELNLARIYVLNPKTQEDSYNKSMLWIKEHLDWIKLIIAHIDSQKEVLQRSVVTTKDELIEKGFLNL +1478729

CINS_1188 +636 VEKI +639
VEKI
CS..3_1511 +1478132 VEKI +1478141

CINS_1188 vs: CSUB8523_0172 in LMG 24377 (Campylobacter subantarcticus LMG 24377, complete genome.)
Gene length: 1929bp / 643aa PV: Yes
Function: motility accessory factor

Score: 1444.00 bits: 626.71 e-value: 0.000000
length: 643 gaps: 22 id: 340 positives: 438 coverage: 0.53 query coverage 0.53

CINS_1188 +2 NMFAKNIQALLNPHlkqkllqiqkqnkfqiiqgkDNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIV +101
N+F KNIQAL N LK+KLL+ +++N + D LDIN + +Y N+L ELN LN Y +KY LYPVLYFYGFGNGILYKALLQN+N + I+V
CS..3_0172 +155444 NIFEKNIQALQNTKLKEKLLHFKQRNFQILQGN-DPLDINFIHNGGGYTLYNNSLSELNEKLNLYNDKYLLYPVLYFYGFGNGILYKALLQNKNRQKIVV +155741

CINS_1188 +102 FENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGI +201
FE +LELIY F++LDFS+EL+ L+I+DT + Y+ LCS P FNF R YFL+LH +YYE+YQ+D+L+ N N+ K +I + GNS D L GI
CS..3_0172 +155144 FEKELELIYLSFHLLDFSEELKNGALIILDTSLVDINIYNELCSTSPFFNFLRVYFLDLHCDYYERYQEDILKTNQNMQKYIKQTILTKGNSSQDALMGI +155441

CINS_1188 +202 EQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIV +301
E ++YN+P +ISN S+KELL KRKN S AIIVSTGPSLIKQLPLLKQY+ KA+IFCADSAYPILAK++IKPDYV LER+ T+EFFNNDFG+FDKDIV
CS..3_0172 +154844 ENYIYNLPDIISNFSFKELLLKRKNSSKYAIIVSTGPSLIKQLPLLKQYANKASIFCADSAYPILAKHDIKPDYVLSLERVKETSEFFNNDFGDFDKDIV +155141

CINS_1188 +302 FVLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTY--EH +401
FVL SV+HPN YL K + K + + + +L+ Y PSVANMAY +A L++K+IIFIGQDLAYA +G SHPK+Y+ + DTY +
CS..3_0172 +154544 FVLTSVIHPNTITYLRKNRRKFMFVQRLLSLDKYFNLKHFEYLIGCPSVANMAYFIAMKLDYKDIIFIGQDLAYANDGSSHPKEYHYG---KYDTYNPQE +154841

CINS_1188 +402 ID----TLAYGGGYMVKTHFIWLLFKNEMEKLISRNENC---ATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKI +501
ID L+YGG + T W++FK E+EK +S +N TYNCTEGGARIEG IEKPFK+ICE LL K +K F KL+ LN KQ EL+LK++ K
CS..3_0172 +154244 IDYGLKILSYGGAKFISTTSTWIMFKTELEKKLSYAKNVLDITTYNCTEGGARIEGTIEKPFKQICEELLIKEPQKHFTKLEKLNSAKQIELMLKSFYKT +154541

CINS_1188 +502 NQSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEH +601
++IK C L+K+ ++L + ND E ++I ++D K K+ N + + + L QFELNLARIYVLNPK KED+FNK++LWIKEH
CS..3_0172 +153944 RKAIKICEYLEKECAFISNTLHFLSND------ENNFKNIIEQLDTFKEKINNELILRSVIDSLN---TQFELNLARIYVLNPKAKEDAFNKTLLWIKEH +154241

CINS_1188 +602 LEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +644
LEWI ++ H A K+ L KNI LE L N+ + ++KI K
CS..3_0172 +153644 LEWILMLNDHSKALKITLEKNIINLEKELENQNLHQYIQKIKK +153770

CINS_1188 vs: CVOL_0220 in LMG 24379 (Campylobacter volucris LMG 24379, complete genome.)
Gene length: 1929bp / 643aa PV: Yes
Function: putative motility accessory factor

Score: 1498.00 bits: 650.00 e-value: 0.000000
length: 642 gaps: 22 id: 347 positives: 441 coverage: 0.54 query coverage 0.55

CINS_1188 +3 MFAKNIQALLNPHlkqkllqiqkqnkfqiiqgkDNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVF +102
+F KNIQAL N LK+KL +K N I+ D LDIN + +YE+ L +LN LN Y +KY LYPVLYFYGFGNGILYKALLQN+N + I+VF
CVOL_0220 +187956 LFEKNIQALQNVKLKEKLQNFKKNNFKVIVGN-DALDINFIHNGGGYRLYEDVLLQLNEKLNLYNDKYLLYPVLYFYGFGNGILYKALLQNKNRQKIVVF +188253

CINS_1188 +103 ENDLELIYAMFQILDFSKELEEARLVIIDTNDLKRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIE +202
E +LE IY F+ +DFS+EL+ L+++DTN + Y+ +CSN P FNF R YFL++H +YYEKYQ+D+L N N+ K SI+ +GN D L GIE
CVOL_0220 +187656 EKELEFIYLSFHYIDFSEELKNGALIVLDTNIININSYNEICSNSPFFNFLRVYFLDIHCDYYEKYQEDILNTNSNMQLHIKRSIYRYGNDSQDSLMGIE +187953

CINS_1188 +203 QFVYNIPSMISNPSYKELLNKRKNLSDTAIIVSTGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVF +302
F+YN+P +ISN S+K+L KRK LSD AIIVSTGPSLIKQLPLLKQY+ A+IFCADSAYPILAK IKPDYV LER+ T+EFFNNDF E DKD++F
CVOL_0220 +187356 NFIYNLPKIISNYSFKQLCLKRKKLSDMAIIVSTGPSLIKQLPLLKQYTNYASIFCADSAYPILAKEGIKPDYVLSLERVKETSEFFNNDFKELDKDVLF +187653

CINS_1188 +303 VLKSVVHPNAFKYLEKKQTKIVVISENSHFINFIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYE---- +402
VLKS+ HPN F+YL KI+ + + F FI L++ GY G SVA MAY LA L HKNIIFIGQDLAYA++G SHPK+Y + DTY+
CVOL_0220 +187056 VLKSLTHPNTFQYLNANNRKIIPATYYTFFTHFIGLHDFGYMNMGQSVATMAYFLALHLEHKNIIFIGQDLAYAKDGSSHPKEYYYG---QYDTYDPKDI +187353

CINS_1188 +403 --HIDTLAYGGGYMVKTHFIWLLFKNEMEKLISRNE---NCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKIN +502
H+ T+AYGG V T IW+LFK ++E+ + + N TYNCTEGGARI+G IEKPFK+ICE LL+K L KPF KL+ LN NKQ EL+LKA+ K+
CVOL_0220 +186756 SYHLTTIAYGGQDKVFTNEIWMLFKTQIEEAVFNAKTYLNTTTYNCTEGGARIKGTIEKPFKQICEQLLTKKLNKPFVKLEKLNQNKQKELMLKAFYKVY +187053

CINS_1188 +503 QSIKKCVDLKKDFQKELDSLNKMMNDFLLSANERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHL +602
++IK C L+K+ ++L LS +E+ ++I ++D K K+E + E++ P QFELNLARIYVLNPKTKED+FNK++LWIKEHL
CVOL_0220 +186456 KAIKICNTLEKECLHLYNTL------IFLSNDEKNFKNVIEQLDYFKSKIEKILILK---ELINPLNTQFELNLARIYVLNPKTKEDAFNKTLLWIKEHL +186753

CINS_1188 +603 EWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKICK +644
EWI ++ HI A K+ L KNI LE L N+ + V+KI K
CVOL_0220 +186156 EWILMLKDHIKALKITLEKNIINLEKELENQNLHQYVQKIKK +186279

CINS_1188 vs: CVOL_1306 in LMG 24379 (Campylobacter volucris LMG 24379, complete genome.)
Gene length: 1902bp / 634aa PV: No
Function: putative motility accessory factor

Score: 1670.00 bits: 724.20 e-value: 0.000000
length: 602 gaps: 14 id: 358 positives: 446 coverage: 0.56 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDINLLNTQDNTL+Y+N LEELNAML Y EKY LYPVLYFYGFGNGILYKALLQN+ HK IIVFE DLE+I+ MF I+DFSKEL+E RLVI DTN L
CVOL_1306 +1273470 DNLDINLLNTQDNTLIYKNPLEELNAMLKIYNEKYCLYPVLYFYGFGNGILYKALLQNKRHKVIIVFEKDLEIIHTMFSIIDFSKELQEFRLVIADTNCL +1273767

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYEKYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIVS +235
DY+ +C PM NF+RTYFLELHSNYYE+Y+DD+L+VN N+ K ++ +GN P+D LQGIEQF +N+P MIS P+YKELL KRKN DTAIIVS
CVOL_1306 +1273770 NILDYEIMCRQQPMLNFARTYFLELHSNYYERYHDDILQVNTNMAEYLKKAVLKYGNLPLDALQGIEQFTHNLPKMISCPTYKELLRKRKNSNDTAIIVS +1274067

CINS_1188 +236 TGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISE-NSHFIN +335
TGPSL KQL LLK+Y+ KATIFCADSAYPILAKYNIKPDYV LER+ +T+EFFNNDFG+FDKDI+F+LKS ++ N KYLEK K ++IS ++ FI
CVOL_1306 +1274070 TGPSLSKQLSLLKRYANKATIFCADSAYPILAKYNIKPDYVLSLERVALTSEFFNNDFGDFDKDIIFILKSYIYKNTIKYLEKNNRKYMLISSTDAKFIF +1274367

CINS_1188 +336 FIDLQNLGYAYSGPSVANMAYKLATNLNHKNIIFIGQDLAYAENGDSHPKD-------YQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEKL +435
F L+N GY +G SVANM LA L HKNII IGQDLAY+ +G SH + Y++ ++ D Y + +AYGG V++ F+W LF+ E
CVOL_1306 +1274370 FTQLHNYGYLATGCSVANMGTNLAFELGHKNIILIGQDLAYSNDGISHSNEYTYLTDAYKDNKIYKRD-YGKYECIAYGGEGKVQSSFVWTLFRQTFESD +1274667

CINS_1188 +436 IS--RNENCATYNCTEGGARIEGAIEKPFKEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNKMMNDFLLSAN +535
I+ + + YNCTEGGARI GAIEKPFKEICE LL+K K FA L+ L +NKQNEL+LKAY KI +SI C +L K FQ+ L LN+ +
CVOL_1306 +1274670 IALFKHYDTTVYNCTEGGARITGAIEKPFKEICEKLLAKKSEKKFANLENLSLNKQNELMLKAYTKIKKSIVHCQELTKTFQEYLSNLNENCQNI---CS +1274967

CINS_1188 +536 ERLLNDMILHVDKIKIKVENFKTMNDLYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRG +635
++ LN +I +D+IK ++E+ K +N+LYE+L P ++QFELNLARIYVLNP ++D +NKS+LWIKEH+ W++LIIAHI AQ+ L NI L+ +I RG
CVOL_1306 +1274970 QKDLNYIINFIDEIKKEIEDTKNINELYEVLNPLLIQFELNLARIYVLNPINEDDIYNKSLLWIKEHISWLELIIAHIKAQEKALNDNIIPLKEAIIQRG +1275267

CINS_1188 +636 FE +637
++
CVOL_1306 +1275270 YK +1275273

CINS_1188 vs: CVOL_1208 in LMG 24379 (Campylobacter volucris LMG 24379, complete genome.)
Gene length: 1921bp / 640aa PV: Yes
Function: No annotation data

Score: 919.00 bits: 400.24 e-value: 0.000000
length: 319 gaps: 2 id: 195 positives: 244 coverage: 0.55 query coverage 0.56

CINS_1188 +36 DNLDINLLNTQDNTLMYENTLEELNAMLNAYHEKYFLYPVLYFYGFGNGILYKALLQNQNHKHIIVFENDLELIYAMFQILDFSKELEEARLVIIDTNDL +135
DNLDIN+++ L Y+ LEELN LN Y +KY LYP L+FYGFGNGILYKALLQN NHK I+VFE D+ +IY MF+++DFS+EL+E RL+++D N+
CVOL_1208 +1175740 DNLDINIIDGGGYKL-YDKPLEELNKTLNLYNDKYLLYPALFFYGFGNGILYKALLQNPNHKIILVFEPDVNIIYTMFKVIDFSQELKENRLLLLDPNNE +1176037

CINS_1188 +136 KRRDYDYLCSNDPMFNFSRTYFLELHSNYYE-KYQDDVLRVnnnllnSFKNSIFSHGNSPIDVLQGIEQFVYNIPSMISNPSYKELLNKRKNLSDTAIIV +235
D L N+ +FNF RTYFLE+H +YY+ KYQ+++L++N + ++ K I S G+ P+D LQGI++F+ NIP MI+ PSYKELLNKRKNLSDTAIIV
CVOL_1208 +1175440 NINDLKNLFLNNLIFNFLRTYFLEIHCDYYDGKYQEEILKLNSLIQDAIKENIISIGDDPLDTLQGIKHFIQNIPKMIAHPSYKELLNKRKNLSDTAIIV +1175737

CINS_1188 +236 STGPSLIKQLPLLKQYSSKATIFCADSAYPILAKYNIKPDYVCMLERIDITAEFFNNDFGEFDKDIVFVLKSVVHPNAFKYLEKKQTKIVVISENSHFIN +335
STGPSL KQLPLLKQY KA+IFCADSAYPILAK NIKPDYV LER D T+EFFNNDFGEFDKDI+FV+KSV HPN KYLEK + K +++S +F
CVOL_1208 +1175140 STGPSLTKQLPLLKQYQNKASIFCADSAYPILAKANIKPDYVFSLERTDFTSEFFNNDFGEFDKDILFVIKSVTHPNTIKYLEKNKRKYMIVSTPEYFFK +1175437

CINS_1188 +336 FIDLQNLGYAYSGPSVANM +354
+ L + GY G SVA +
CVOL_1208 +1174840 YCSLNDFGYFNMGWSVAHI +1174894

Score: 680.00 bits: 297.14 e-value: 0.000000
length: 282 gaps: 11 id: 159 positives: 199 coverage: 0.55 query coverage 0.56

CINS_1188 +357 LATNLNHKNIIFIGQDLAYAENGDSHPKDYQNSATFESDTYEHIDTLAYGGGYMVKTHFIWLLFKNEMEK--LISRNENCATYNCTEGGARIEGAIEKPF +456
L+ L H NIIFIGQDLAY + G+SHPKDYQNS+TFE+DTYEHID L YGG VKTH W+ FK +E L N YNCTEGGARI G IE+PF
CVOL_1208 +1174779 LSVHLKHGNIIFIGQDLAYNDIGESHPKDYQNSSTFETDTYEHIDVLGYGGIGHVKTHKTWIFFKKILENDILTFNKMNIKIYNCTEGGARINGTIEEPF +1175076

CINS_1188 +457 KEICETLLSKNLHKPFAKLDTLNINKQNELLLKAYCKINQSIKKCVDLKKDFQKELDSLNK--MMNDFLLSANERLLNDMIL-HVDKIKIKVENFKTMND +556
K++CE LL K+L KPF KL+ LN+NKQNELLLKAY KI +S+++ +LKK+ + S+NK + D L N + ++IL ++D+IK + +N
CVOL_1208 +1174479 KQVCEKLLKKDLNKPFIKLENLNLNKQNELLLKAYFKIIKSVRQYENLKKELCERNISINKNLLHIDNLDIQNSIHIFELILKQIDEIKTSIYRCGLLN- +1174776

CINS_1188 +557 LYEILGPTIVQFELNLARIYVLNPKTKEDSFNKSVLWIKEHLEWIQLIIAHINAQKLGLIKNIKQLECVLINRGFEKLVEKI +638
GP I QFELNLARIYVLNPKT+EDS+NKS+LWIKEHL+WI+LIIAHI++QK L + I + LI +GF LVEKI
CVOL_1208 +1174179 -----GPLIRQFELNLARIYVLNPKTQEDSYNKSMLWIKEHLDWIKLIIAHIDSQKEVLQRSIVTTKDELIEKGFLNLVEKI +1174422