Analysis of poly-G tracts in LMG 24379


Strain name: LMG 24379
Filepath: ../polyG/campy.new\241821-744815412.gb
Species: C. volucris

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP007774187821G99170CVOL_0220642putative motility accessory factorCj1318
Cj1333
Cj1335
CJJ81176_1336A911_06490
A911_06480
PJ16_07340
PJ16_07410
PJ16_07420
PJ17_06980
PJ17_07050
PJ17_07060
N135_01421
N135_01423
N564_02285
N564_02295
N565_02385
N565_02375
N755_02445
N755_02435
PJ18_06860
PJ18_06850
PJ18_06785
PJ19_07340
PJ19_07420
PJ19_07410
JJD26997_0374
JJD26997_0376
JJD26997_0396
BN867_13180
BN867_13200
M635_02360
M635_02285
M635_02370
UC78_1278
UC78_1276
UC78_1267
C8J_1253CJ8421_06665RC25_06245CJM1cam_1292CJH_06700CJSA_1271
CJSA_1256
CJSA_1269
ICDCCJ07001_1265CJM1_1292MTVDSCj20_1315ERS445056_01444
ERS445056_01446
ERS445056_01430
H730_07620
H730_07630
CJE1522
CJE1524
CjjRM1285_1333AXW77_06575
AXW77_06490
AXW77_06565
CjjRM3196_1335CjjRM3197_1335CJS3_1430
CJS3_1427
A0W69_07845QZ67_01453
QZ67_01469
QZ67_01471
N149_1281
N149_1298
N149_1296
AB430_08255
AB430_08325
AB430_08340
VC76_06695ATE51_00894
ATE51_00898
ATE51_00928
YSQ_02175
YSQ_02185
YSQ_02255
YSS_07230
YSS_07245
YSS_07160
YSS_07240
YSU_02220
YSU_02270
YSU_02210
A6K30_02235
A6K30_02165
CINS_0156
CINS_1188
CONCH_0163Cla_0168CSUB8521_0178
CSUB8521_1411
CSUB8521_0235
CSUB8523_1511
CSUB8523_0172
CVOL_0220
CVOL_1306
CVOL_1208
1CP007774223134G995340CVOL_0259526hypothetical proteinCVOL_0259
2CP007774259627TA665350CVOL_0295842glycosyltransferase, family A (ATP grasp domain)CjjRM1285_1421CVOL_0295
3CP007774421606G8840CVOL_0451228SAM-dependent methyltransferaseCj0170
Cj1325
CJJ81176_0206A911_06440PJ16_07375
PJ16_00860
PJ17_07015
PJ17_00860
N135_02220
N135_00227
N564_01845
N564_02250
N565_00159
N565_02340
N755_01910
N755_02400
PJ18_06815
PJ18_01130
PJ19_00860
PJ19_07375
JJD26997_0185
JJD26997_0387
M635_08930
M635_02325
CJH_00885CJSA_1262
CJSA_0160
ERS445056_01437
ERS445056_00175
A0W68_07125H730_07585AXW77_06530A0W69_07805
A0W69_01730
QZ67_01462
QZ67_00236
N149_1289AB430_08290G157_02190VC76_06655ATE51_00914YSQ_02220CINS_1497
CINS_1195
CONCH_0464Cla_1564CSUB8521_1418
CSUB8521_0553
CSUB8523_1518
CSUB8523_0539
CVOL_0451
4CP007774482013G994420CVOL_0507712autotransporter domain proteinCONCH_0577UPTC3659_0606CSUB8521_0608CSUB8523_0595CVOL_0507
5CP0077741085398G981690CVOL_1130655No annotation dataN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CINS_1119CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
6CP0077741101228G10104430CVOL_1139859hypothetical proteinUPTC4110_0710
UPTC4110_1148
CONCH_0686
CONCH_1120
CONCH_1473
UPTC3659_1740
UPTC3659_0546
UPTC3659_0799
UPTC3659_0778
UPTC3659_1382
Cla_1529UPTC16701_0706
UPTC16701_0685
UPTC16701_1140
UPTC16712_0708
UPTC16712_1172
CD56_06005
Slaughter Beach [0]
CD56_03810
CPEL_0265CAQ16704_0853
CAQ16704_1159
CAQ16704_0537
CAQ16704_1182
CAQ16704_1467
CAQ16704_1533
CSUB8521_0659
CSUB8521_1739
CSUB8521_1339
CSUB8523_1841
CSUB8523_0747
CSUB8523_1440
CVOL_1139
7CP0077741155271G99170CVOL_1188630putative motility accessory factorJJD26997_0523QZ67_01453CINS_1171CONCH_1171CSUB8521_1392CSUB8523_1493CVOL_1188
8CP0077741171907G983480CVOL_1205500No annotation dataBN867_11440C8J_1093RC25_05435CJM1cam_1130CJM1_1130MTVDSCj20_1154CCV52592_0864CIG1485E_0946CIG2463D_0946CIG11343_0927CINS_1186UPTC4110_1217
UPTC4110_1214
CD56_06335CVOL_1205
9CP0077741175704G99170CVOL_1208372No annotation dataCSUB8521_1411CSUB8523_1511CVOL_1208
10CP0077741182294G99540CVOL_1215304hypothetical proteinCSUB8521_1420CSUB8523_1520CVOL_1215
11CP0077741249058G99150CVOL_1279422hypothetical protein (DUF2172 domain), putative M28 family zinc peptidaseCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
12CP0077741250413G99150CVOL_1280424hypothetical protein (DUF2172 domain), putative M28 family zinc peptidaseCj1295CJJ81176_1312A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
13CP0077741254670G10105190CVOL_1285135hypothetical protein, possible glyoxalase/bleomycin resistance proteinCj1301A911_06320PJ16_07280PJ17_06885N135_01389N564_01319N565_01356N755_01351PJ18_06700PJ19_07280JJD26997_0422M635_02190CJ8421_06475CJH_06585CJSA_1239ICDCCJ07001_1246ERS445056_01410A0W68_07005H730_07445CjjRM1285_1314AXW77_06410CjjRM3196_1315CjjRM3197_1315A0W69_07690QZ67_01435G157_02320VC76_06520AR446_01660ATE51_00966YSQ_02365YSS_07055YSU_02390A6K30_02330CSUB8521_1494CSUB8523_1590CVOL_1285
14CP0077741259446G9980CVOL_1290403hypothetical protein (DUF2920 domain)Cj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06610CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06540
VC76_06590
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
15CP0077741260403G99160CVOL_1291267aminoglycoside N3'-acetyltransferaseCj1298
Cj1296
A911_06295
A911_06305
PJ16_07260
PJ16_07265
PJ17_06870N135_02210
N135_01386
N564_02215
N564_01316
N565_01353
N565_02305
N755_01348
N755_02360
PJ18_06680
PJ18_06685
PJ19_07260
PJ19_07265
JJD26997_0426
JJD26997_0425
BN867_12890M635_02175UC78_1248C8J_1239CJ8421_06460RC25_06175CJM1cam_1278CJH_06565
CJH_06570
CJSA_1236
CJSA_1234
ICDCCJ07001_1244CJM1_1278MTVDSCj20_1302ERS445056_01407A0W68_06985
A0W68_06990
H730_07430CJE1502
CJE1488
CjjRM1285_1310
CjjRM1285_1311
AXW77_06390
AXW77_06395
CjjRM3196_1312CjjRM3197_1312CJS3_1394
CJS3_1408
A0W69_07675
A0W69_07670
QZ67_01432
QZ67_01431
AB430_08165G157_02335VC76_06505AR446_01675YSQ_02380YSS_07040
YSS_07035
YSU_02405A6K30_02345CFT03427_1427CFF04554_1479CFF8240_1463CSG_16000CFV97608_1601CFTSP3_1491CFVI03293_1501CR44_07230CHL_1687CHH_1505CIG1485E_0403CIG11343_0352CINS_1264UPTC4110_1292CONCH_1254UPTC3659_1527Cla_1310
Cla_1301
UPTC16712_1308CD56_06700CPEL_1413CSUB8521_1490
CSUB8521_0847
CSUB8523_0934
CSUB8523_1586
CVOL_1291
CVOL_1281
16CP0077741263551G99290CVOL_129426No annotation data
17CP0077741268661G9980CVOL_1300409hypothetical protein (DUF2920 domain)Cj1305c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
PJ16_07300PJ17_06905N135_01395
N135_02215
N564_02220
N564_02225
N565_02310
N565_02315
N755_02365
N755_02370
PJ18_06725
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0408
BN867_12950M635_02215
M635_02220
RC25_06195CJH_06610CJSA_1243
CJSA_1244
ICDCCJ07001_1254
ICDCCJ07001_1249
ERS445056_01416
ERS445056_01415
ERS445056_01422
A0W68_07055H730_07465CJE1495CjjRM1285_1318
CjjRM1285_1320
AXW77_06430CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1400A0W69_07710
A0W69_07735
QZ67_01441
QZ67_01439
N149_1264AB430_08195VC76_06540AR446_01635ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335YSS_07090
YSS_07075
YSS_07085
YSU_02365A6K30_02310CINS_0778
CINS_1270
CINS_0772
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_0796
CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300