Analysis of poly-G tracts in 82-40


Strain name: 82-40
Filepath: ../polyG/campy.new\36188-118413283.gb
Species: C. fetus

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP000487458536C1092360CFF8240_04651287No annotation dataCFF04554_0475CFF8240_0465CSG_5400CFV97608_0520CFVI03293_0466
1CP000487603231G8None230-230230bp upstream of CFF8240_05916003-polyprenyl-4hydroxybenzoate decarboxylaseCj0546CJJ81176_0571A911_02660PJ16_02710PJ17_02645N135_00595N564_00532N565_00580N755_00579PJ18_02715PJ19_02975JJD26997_1384BN867_05560M635_07075UC78_0530C8J_0507CJ8421_02670RC25_02655CJM1cam_0521CJH_02760CJSA_0513ICDCCJ07001_492CJM1_0521MTVDSCj20_0563ERS445056_00532A0W68_02665H730_03605CJE0650CjjRM1285_0517AXW77_02660CjjRM3196_0523CjjRM3197_0523CJS3_0536A0W69_03580QZ67_00556N149_0535AB430_04230G157_05935VC76_02845AR446_05375ATE51_03116YSQ_07125YSS_02530YSU_06135A6K30_06000CCC13826_1045CCON33237_0800CCV52592_0770CFT03427_0594CFF04554_0584CFF8240_0591CSG_2380CFV97608_0637CFTSP3_0595CFVI03293_0587CR44_03025CGRAC_1029CHAB381_0901CHL_1490CHH_0523CIG1485E_0648CIG2463D_0648CIG11343_0576CINS_0741UPTC4110_0786CONCH_0780UPTC3659_0883Cla_0766UPTC16701_0780UPTC16712_0784CD56_04185CPEL_0838CAQ16704_0774CSUB8521_0817CSUB8523_0904CUREO_0645CVOL_0758
2CP000487870775G992590CFF8240_0865253prokaryotic N-terminal methylation motif domain proteinCFT03427_0866CFF04554_0871CFF8240_0865CSG_11240CFV97608_0930CFTSP3_0921CFVI03293_0884CR44_04400
3CP000487887510G892310CFF8240_0879522No annotation dataCFT03427_0876CFF04554_0883CFF8240_0879CSG_11100CFV97608_0943CFTSP3_0931CFVI03293_0872CR44_04455
4CP000487964673G982320CFF8240_0963447hypothetical proteinCFT03427_0951
CFT03427_1578
CFF04554_0962
CFF04554_1628
CFF8240_0963
CFF8240_1626
CSG_17600
CSG_10300
CFV97608_1022
CFV97608_1753
CFTSP3_1006
CFTSP3_1642
CFVI03293_1650
CFVI03293_0793
CR44_08020
CR44_04830
5CP0004871041611G992340CFF8240_1041731methyl-accepting chemotaxis proteinCj1506cCJJ81176_1498A911_07255PJ16_08255PJ17_07875N135_01597N564_01500N565_01536N755_01538PJ18_07650PJ19_08250JJD26997_1858BN867_14750M635_03225UC78_1438C8J_1409CJ8421_07535RC25_07085CJM1cam_1450CJH_07885CJSA_1428ICDCCJ07001_1432CJM1_1450MTVDSCj20_1471ERS445056_01629A0W68_07825H730_08820CJE1679CjjRM1285_1500AXW77_07460CjjRM3196_1506CjjRM3197_1506CJS3_1585A0W69_08660QZ67_01635G157_01355VC76_07445YSS_08035A6K30_01405CFT03427_1021CFF04554_1030CFF8240_1041CSG_9530CFV97608_1097CFTSP3_1083CFVI03293_0998CR44_05185CINS_0215
6CP0004871116351G9102350CFF8240_1123418hypothetical proteinCFT03427_1099CFF04554_1149CFF8240_1123CSG_8730CFV97608_1174CFTSP3_1161CFVI03293_1119CR44_05590
7CP0004871211095G992630CFF8240_1227553methyl-accepting chemotaxis proteinCFT03427_1196CFF04554_1255CFF8240_1227CSG_7650CFV97608_1279CFTSP3_1258CFVI03293_1224CR44_06080
8CP0004871374470G99430CFF8240_13931285restriction and modification enzyme CjeIA911_05085BN867_10440C8J_0992CJM1cam_1030ICDCCJ07001_1013CJM1_1030MTVDSCj20_1057A0W68_05495CjjRM3196_1070CjjRM3197_1070A0W69_06450CFF04554_1405CFF8240_1393CSG_15310CFV97608_1531CFVI03293_1431
9CP0004871449923G98150CFF8240_1468425No annotation dataCj1295A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
10CP0004871459773G10102380CFF8240_148082transformation system proteinCFF8240_1480CFV97608_1615
11CP0004871525563G9102390CFF8240_1551129phosphoribosylglycinamide formyltransferase 2CFF8240_1551CSG_16870CR44_07655
12CP0004871525739G982390CFF8240_1552321hypothetical proteinCFT03427_1510CFF04554_1562CFF8240_1552CSG_16880CFV97608_1684CFTSP3_1574CFVI03293_1574CR44_07655CHL_0243
13CP0004871527530G992410CFF8240_1555228hypothetical proteinCFT03427_1512CFF04554_1564CFF8240_1555CSG_16910CFV97608_1688CFTSP3_1576CFVI03293_1586CR44_07670CHL_0244
14CP0004871562120G992650CFF8240_1593354radical SAM domain proteinCFT03427_1550CFF04554_1600CFF8240_1593
CFF8240_1592
CSG_17280CFV97608_1725CFTSP3_1614CFVI03293_1622CR44_07860
15CP0004871563346G982680CFF8240_1594376hypothetical proteinCFF8240_1594
16CP0004871564048G982690CFF8240_1596277UDP-glucose 4-epimerase, putativeCFF8240_1596
17CP0004871567914G992700CFF8240_1601354heme biosynthesis protein, putativeCFF8240_1601
18CP0004871569788G10102710CFF8240_1603250methyltransferaseCFF8240_1603
19CP0004871570477G9102720CFF8240_1604452hypothetical proteinCFF8240_1604
20CP0004871571606G882480CFF8240_1606442No annotation dataCFT03427_1559CFF04554_1609CFF8240_1606CSG_17400CFV97608_1734CFTSP3_1623CFVI03293_1631CR44_07905
21CP0004871575234G982490CFF8240_1609288probable 3-demethylubiquinone-9 3-methyltransferaseCFT03427_1562CFF04554_1612CFF8240_1609CSG_17430CFV97608_1737CFTSP3_1626CFVI03293_1634CR44_07920
22CP0004871579803G10102730CFF8240_161469hypothetical proteinCFF8240_1614
23CP0004871587204G992520CFF8240_1621481hypothetical proteinCFT03427_1573CFF04554_1623CFF8240_1621CSG_17550CFV97608_1748CFTSP3_1637CFVI03293_1645CR44_07980
24CP0004871588218G992530CFF8240_1622465conserved hypothetical proteinCFT03427_1574CFF04554_1624CFF8240_1622CSG_17560CFV97608_1749CFTSP3_1638CFVI03293_1646CR44_07990
25CP0004871591273G992320CFF8240_1626406hypothetical proteinCFT03427_0951
CFT03427_1578
CFF04554_0962
CFF04554_1628
CFF8240_0963
CFF8240_1626
CSG_17600
CSG_10300
CFV97608_1022
CFV97608_1753
CFTSP3_1006
CFTSP3_1642
CFVI03293_1650
CFVI03293_0793
CR44_08020
CR44_04830
26CP0004871593698G89190CFF8240_1628253No annotation dataCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
27CP0004871594059G992550CFF8240_1629258conserved hypothetical proteinCj1419cCJJ81176_1418A911_06905PJ16_07830N135_01508N564_01416N565_01456N755_01453PJ18_07250PJ19_07825JJD26997_1752BN867_06870M635_02770UC78_1361C8J_0640CJ8421_07140RC25_06630CJM1cam_0658CJH_07480CJSA_1350CJM1_0658MTVDSCj20_0697ERS445056_01535A0W68_03580H730_08050CjjRM1285_1415AXW77_06985A0W69_08255QZ67_01554AR446_04840YSQ_05935YSS_03105YSU_05585CFT03427_1581CFF04554_1631CFF8240_1629CSG_17630CFV97608_1756CFTSP3_1646CFVI03293_1653CR44_08035CINS_0303CONCH_1265UPTC3659_1406Cla_0313CD56_06725CSUB8521_0344CSUB8523_0327
28CP0004871671538G9None267-603603bp upstream of CFF8240_1707104No annotation dataCFT03427_1199CFF04554_1707CFF8240_1707CSG_18380CFV97608_1833CFTSP3_1261CFVI03293_1730
29CP0004871696282G1092560CFF8240_1739459hypothetical proteinCFT03427_1684CFF04554_1736CFF8240_1739CSG_18690CFV97608_1863CFTSP3_1749CFVI03293_1760CR44_08555