Gene group 56

[Back to Gene Group Index]

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


#GroupNameLikely Function#PV in gene#Total PV#Total GenesC. jejuni
NCTC 11168
C. jejuni
81-176
C. jejuni
PT14
C. jejuni
00-0949
C. jejuni
00-1597
C. jejuni
00-2425
C. jejuni
00-2426
C. jejuni
00-2538
C. jejuni
00-2544
C. jejuni
00-6200
C. jejuni
01-1512
C. jejuni
269.97
C. jejuni
4031
C. jejuni
32488
C. jejuni
35925B2
C. jejuni
81116; NCTC 11828
C. jejuni
CG8421
C. jejuni
CJ677CC519
C. jejuni
CJM1cam
C. jejuni
F38011
C. jejuni
IA3902
C. jejuni
ICDCCJ07001
C. jejuni
M1
C. jejuni
MTVDSCj20
C. jejuni
NCTC11351
C. jejuni
OD267
C. jejuni
R14
C. jejuni
RM1221
C. jejuni
RM1285
C. jejuni
RM3194
C. jejuni
RM3196
C. jejuni
RM3197
C. jejuni
S3
C. jejuni
WP2202
C. jejuni
YH001
C. coli
15-537360
C. coli
BFR-CA-9557
C. coli
CVM N29710
C. coli
FB1
C. coli
HC2-48
C. coli
OR12
C. coli
RM1875
C. coli
RM4661
C. coli
RM5611
C. coli
YH501
C. concisus
13826
C. concisus
ATCC 33237
C. curvus
525.92
C. fetus
03-427
C. fetus
04/554
C. fetus
82-40
C. fetus
84-112
C. fetus
97/608
C. fetus
SP3
C. fetus
cfvi03/293
C. fetus
pet-3
C. gracilis
ATCC 33236
C. hominis
ATCC BAA-381
C. hyointestinalis
CCUG 27631
C. hyointestinalis
LMG 9260
C. iguaniorum
1485E
C. iguaniorum
2463D
C. iguaniorum
RM11343
C. insulaenigrae
NCTC 12927
C. lari
CCUG 22395
C. lari
LMG 11760
C. lari
NCTC 11845
C. lari
RM2100; ATCC BAA-1060D
C. lari
RM16701
C. lari
RM16712
C. lari
Slaughter Beach
C. peloridis
LMG 23910
C. sp.
RM16704
C. subantarcticus
LMG 24374
C. subantarcticus
LMG 24377
C. ureolyticus
RIGS 9880
C. volucris
LMG 24379
56gmdGDP-mannose 4,6-dehydratase101028CJ..6_1426
PJ18_07310
JJ..7_1763
BN.._14030
M635_02860
UC78_1367
CJ.._07175
RC25_06665
CJH_07515
IC..1_1357
ER.._01542
A0.._07465
H730_08150
CJE1611
AX.._07085
Cj..6_1425
Cj..7_1425
CJS3_1519
A0.._08300
QZ67_01567
AB.._08780
YSQ_01730
CINS_0290
UP..9_0325
UP..1_0315
UP..2_0313
CA..4_0314
CS..1_0326

Annotated functions

Function#Occuringscore
GDP-mannose 4,6-dehydratase51.71
GDP-mannose 4,6 dehydratase11.25
GDP-mannose 4%2C6-dehydratase11.14
GDP-D-mannose dehydratase10.43
GDP-6-deoxy-D-mannose reductase10.29
No annotation data10.00

Subgroups

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
PJ18_07310
JJ..7_1763
M635_02860
CJ.._07175
RC25_06665
ER.._01542
AX.._07085
QZ67_01567
CINS_0290
1
CA..4_0314

Predicted On/Off state

SubgroupNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0
PJ18_07310
JJ..7_1763
M635_02860
CJ.._07175
RC25_06665
ER.._01542
AX.._07085
QZ67_01567
CINS_0290
1
CA..4_0314

00-6200

00-6200 : PJ18_07310 [tract entry] [top]

Function: GDP-mannose 4,6-dehydratase
+0 MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKVGIKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPVIKVGNLSSVRTFQDCRDAIRAYYLLSLESQKGNIPCGEAFNIAGEEAFKLPEVIDILLNFSDMGGGIEVRQVEDRMRPIDADY
+300 QMFDNSKIKSFIDWKAEIPVRQMLKDLLNHWRNEIKRGRIPLNR

[show detailed alignment]

269.97

269.97 : JJD26997_1763 [tract entry] [top]

Function: GDP-mannose 4,6-dehydratase
+0 MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFESKKPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIRILKAKEEYDPVVHICSSSEVYGKAKAGVKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPVIKVGNLSSVRTFQDARDAIRAYYLLSLESKKGNVPCGEAFNIAGEEAFKLPEVIDILLNFSDMGGGGIEVRQVEDRMRPIDAD
+300 YQMFDNSKIKSFIDWKAEIPVRQMLKDLLNHWRKEIKKGRIPLSR

[show detailed alignment]

32488

32488 : M635_02860 [tract entry] [top]

Function: GDP-mannose 4,6-dehydratase
+0 MGKIMKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDI
+100 PIETLQTNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKVGIKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDV
+200 FFESTVAKQIALIEAGYQEPVIKVGNLSSVRTFQDCRDAIRAYYLLSLESQKGNIPCGEAFNIAGEEAFKLPEVIDILLNFSDMGGGIEVRQVEDRMRPI
+300 DADYQMFDNSKIKSFIDWKAEIPVRQMLKDLLNHWRNEIKRGRIPLNR

[show detailed alignment]

CG8421

CG8421 : CJ8421_07175 [tract entry] [top]

Function: GDP-D-mannose dehydratase
+0 MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKAGVKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPVIKVGNLSSVRTFQDCRDAIRAYYLLSLESEKGKVPCGEAFNIAGEEAFKLPEVIDILLNFSDMGGGIEVRQVEDRMRPIDADY
+300 QMFDNGKIKSFIDWKAEIPVRQMLKDLLNHWRNEIKRGRIPLNR

[show detailed alignment]

CJ677CC519

CJ677CC519 : RC25_06665 [tract entry] [top]

Function: GDP-mannose 4,6-dehydratase
+0 MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRIRIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKTGVKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPVIKVGNLSSVRTFQDCRDAIRAYYLLSLESQKGNIPCGEAFNIAGEEAFKLPEVIDILLNFSDMGGGIEVRQVEDRMRPIDADY
+300 QMFDNSKIKSFIDWKAEIPVRQMLKDLLNHWRNEIKRGRIPLNR

[show detailed alignment]

NCTC11351

NCTC11351 : ERS445056_01542 [tract entry] [top]

Function: GDP-mannose 4%2C6-dehydratase
+0 MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKAGVKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPVIKVGNLSSVRTFQDARDAIRAYYLLSLESEKGKVPCGEAFNIAGEEAFKLPEVIDILLNFSDMGGGIEVRQVEDRMRPIDADY
+300 QMFDNGKIKSFIDWKAEIPVRQMLKDLLNHWRNEIKRGRIPLNR

[show detailed alignment]

RM3194

RM3194 : AXW77_07085 [tract entry] [top]

Function: GDP-mannose 4,6 dehydratase
+0 MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKVGIKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPVIKVGNLSSVRTFQDCRDAIRAYYLLSLESQKGNIPCGEAFNIAGEEAFKLPEVIDILLNFSDMGGGGIEVRQVEDRMRPIDAD
+300 YQMFDNSKIKSFIDWKAEIPVRQMLKDLLNHWRNEIKRGRIPLNR

[show detailed alignment]

YH001

YH001 : QZ67_01567 [tract entry] [top]

Function: GDP-6-deoxy-D-mannose reductase
+0 MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIRILKAKDGYDPVVHICSSSEVYGKAKVGIKLNEETAFHGASPYSISKIGTDYLGRFYGEAYNIRTFVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPVIKVGNLSSVRTFQDCRDAIRAYYLLSLESQKGNIPCGEAFNIAGEEAFKLPEVIDILLNFSDMGGGGIEVRQVEDRMRPIDAD
+300 YQMFDNSKIKSFIDWKAEIPVRQMLKDLLNHWRNEIKRGRIPLNR

[show detailed alignment]

NCTC 12927

NCTC 12927 : CINS_0290 [tract entry] [top]

Function: No annotation data
+0 MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRISIFYADLNDYSSLQKLFETKRPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIKILKAKDGYDPVVHICSSSEVYGRAKAGIKLNEETTFHGASPYSISKIGTDYLGRFYGEAYGIKTYVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPVIKVGNLSSVRTFQDCRDAIRAYYLLSLESEKGNVPCGEAFNIAGEEAFKLPEVVDILLNFSTMGGGIEVVEDEDRLRPIDADY
+300 QMFDNTKIKKFIDWKPEIPVSKMLKDLLEHWRNEIKKGRIPLNR

[show detailed alignment]

RM16704

RM16704 : CAQ16704_0314 [tract entry] [top]

Function: GDP-mannose 4,6-dehydratase
+0 MKKKTLITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIYHLSDRINKKDRINIFYADLNDYSSIQKLFETKRPDVIFHLAAQSYPKTSFDIPIET
+100 LQTNIIGTANILENIRLLKAKDGYDPVVHVCSSSEVYGRAKAGIKLNEDTTFHGASPYSISKIGTDYLGRFYGEAYGIKTYVTRMGTHSGPRRSDVFFES
+200 TVAKQIALIEAGYQEPIIKVGNLSSVRTFQDARDAIRAYYLLSLESEKGKVPCGEAFNIAGEEAFKLPEVIDILLSFSTRKDIKVEQDEERLRPIDADYQ
+300 MFDNTKIKSYINWKPEIPARQMFEDLLNHWRKEISMGRIPLNR

[show detailed alignment]