Analysis of poly-G tracts in HC2-48


Strain name: HC2-48
Filepath: ../polyG/campy.new\562101-943353927.gb
Species: C. coli

Created: 2018-09-09 12:25:37 (W. Europe Summer Time)


TractNoContigLocationTractOn lengthGene GroupOffset from geneGeneLengthFunctionNCTC 1116881-176PT1400-094900-159700-242500-242600-253800-254400-620001-1512269.9740313248835925B281116; NCTC 11828CG8421CJ677CC519CJM1camF38011IA3902ICDCCJ07001M1MTVDSCj20NCTC11351OD267R14RM1221RM1285RM3194RM3196RM3197S3WP2202YH00115-537360BFR-CA-9557CVM N29710FB1HC2-48OR12RM1875RM4661RM5611YH50113826ATCC 33237525.9203-42704/55482-4084-11297/608SP3cfvi03/293pet-3ATCC 33236ATCC BAA-381CCUG 27631LMG 92601485E2463DRM11343NCTC 12927CCUG 22395LMG 11760NCTC 11845RM2100; ATCC BAA-1060DRM16701RM16712Slaughter BeachLMG 23910RM16704LMG 24374LMG 24377RIGS 9880LMG 24379
0CP013034138652T11None1813131bp downstream of AR446_00750310formate dehydrogenaseCj1509cCJJ81176_1501A911_07270PJ16_08270PJ17_07890N135_01600N564_01503N565_01539N755_01541PJ18_07665PJ19_08265JJD26997_1861BN867_14780M635_03240UC78_1441C8J_1412CJ8421_07550RC25_07100CJM1cam_1453CJH_07900CJSA_1431ICDCCJ07001_1435CJM1_1453MTVDSCj20_1474ERS445056_01632A0W68_07840H730_08835CJE1682CjjRM1285_1503AXW77_07475CjjRM3196_1509CjjRM3197_1509CJS3_1588A0W69_08675QZ67_01638N149_1458AB430_00260G157_01340VC76_07460AR446_00750ATE51_00552YSQ_01340YSS_08050YSU_01360A6K30_01390CCC13826_2138CCON33237_0328CCV52592_1778CFT03427_1444CFF04554_1495CFF8240_1483CSG_16180CFV97608_1617CFTSP3_1508CFVI03293_1517CR44_07320CGRAC_0519CHAB381_1780CHL_1609CHH_1521CIG1485E_0385CIG2463D_0390CIG11343_0336CINS_0341UPTC4110_0351CONCH_0356UPTC3659_0371Cla_0355UPTC16701_0350UPTC16712_0352CD56_01735CPEL_0360CAQ16704_0365CSUB8521_0385CSUB8523_0368CUREO_0473CVOL_0346
1CP013034142251G10None172-4242bp upstream of AR446_00760746hypothetical proteinN149_1457AB430_00255AR446_00760YSQ_01360YSU_01375CINS_0952UPTC3659_1199CPEL_1091CAQ16704_0970CSUB8521_1152CSUB8523_1258
2CP013034275586G9None98-5151bp upstream of AR446_01420759autotransporterBN867_13460UC78_1307C8J_1278CJM1cam_1321CJH_06895ICDCCJ07001_1296CJM1_1321MTVDSCj20_1341ERS445056_01472AXW77_06700CjjRM3196_1363CjjRM3197_1363N149_1324AB430_08465G157_02025VC76_06820AR446_01420ATE51_00842YSQ_02050YSS_07370YSU_02085A6K30_02030
3CP013034296479G8980AR446_01515413No annotation dataCj1342cCJJ81176_1341A911_06515PJ16_07450PJ17_07090N135_02225N564_02325N565_01378N755_01375PJ18_06890PJ19_07445JJD26997_1051
JJD26997_0368
BN867_13260M635_02400UC78_1285C8J_1258CJ8421_06725RC25_06265CJM1cam_1299CJH_06730CJSA_1277ICDCCJ07001_1274CJM1_1299MTVDSCj20_1320ERS445056_01452A0W68_07215H730_07660CJE1531CjjRM1285_1338AXW77_06605CjjRM3196_1342CjjRM3197_1342CJS3_1436A0W69_07875QZ67_01477N149_1304AB430_08370G157_02115VC76_06720AR446_01515ATE51_00880YSQ_02145YSS_07275YSU_02180A6K30_02125CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
Cla_1307CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_1289
4CP013034317773G10980AR446_01600404No annotation dataCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07710
A0W69_07730
A0W69_07735
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06590
VC76_06540
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0772
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0853
CSUB8521_0852
CSUB8523_0940CVOL_1290
5CP013034318836G76450AR446_016053393-oxoacyl-ACP synthasePJ17_06935N149_1272G157_02260VC76_06585AR446_01605YSQ_02305YSS_07110YSU_02320A6K30_02280Cla_1314CD56_06750
6CP013034321362G1010290AR446_01620105No annotation data
7CP013034325951G9980AR446_01640404carbonic anhydraseCj1305c
Cj1310c
Cj1306c
CJJ81176_1327A911_06345
A911_06340
A911_06370
A911_06365
PJ16_07300PJ17_06905
PJ17_06940
N135_01395
N135_02215
N135_01399
N564_01328
N564_02220
N564_02225
N565_02310
N565_02315
N565_01367
N755_02375
N755_02365
N755_02370
PJ18_06725
PJ18_06745
PJ18_06720
PJ19_07300JJD26997_0416
JJD26997_0417
JJD26997_0408
JJD26997_0410
BN867_12990
BN867_12950
M635_02240
M635_02215
M635_02220
UC78_1254
UC78_1259
C8J_1243CJ8421_06495
CJ8421_06525
RC25_06195CJM1cam_1282CJH_06630
CJH_06610
CJSA_1243
CJSA_1244
CJSA_1248
ICDCCJ07001_1254
ICDCCJ07001_1249
CJM1_1282MTVDSCj20_1305ERS445056_01416
ERS445056_01422
ERS445056_01415
A0W68_07045
A0W68_07055
A0W68_07025
H730_07465CJE1495
CJE1504
CjjRM1285_1324
CjjRM1285_1318
CjjRM1285_1320
AXW77_06450
AXW77_06430
CjjRM3196_1319
CjjRM3196_1324
CjjRM3197_1324
CjjRM3197_1319
CJS3_1409
CJS3_1400
A0W69_07730
A0W69_07735
A0W69_07710
QZ67_01441
QZ67_01445
QZ67_01439
N149_1273
N149_1264
AB430_08195
AB430_08215
G157_02255VC76_06540
VC76_06590
AR446_01600
AR446_01640
AR446_01635
ATE51_00944
ATE51_00952
ATE51_00958
ATE51_00954
YSQ_02335
YSQ_02295
YSQ_02340
YSS_07120
YSS_07090
YSS_07075
YSS_07085
YSU_02370
YSU_02365
YSU_02310
A6K30_02275
A6K30_02310
CINS_0778
CINS_0772
CINS_1270
CINS_0773
CONCH_1270Cla_1317
Cla_1308
Cla_1315
Cla_0796
CD56_06755CPEL_1412CAQ16704_1315CSUB8521_0851
CSUB8521_0846
CSUB8521_0853
CSUB8521_0852
CSUB8523_0939
CSUB8523_0933
CSUB8523_0938
CSUB8523_0940
CVOL_1290
CVOL_0789
CVOL_1300
8CP013034332936G1011150AR446_01680436No annotation dataCj1295CJJ81176_1312
CJJ81176_1313
A911_06290PJ16_07255PJ17_06865N135_01383N564_01313N565_02300N755_01345PJ18_06675PJ19_07255JJD26997_0427BN867_12880M635_08875UC78_1247C8J_1238CJ8421_06450RC25_06170CJM1cam_1277CJH_06560CJSA_1233ICDCCJ07001_1243CJM1_1277MTVDSCj20_1301ERS445056_01406A0W68_06980H730_07425CJE1487CjjRM1285_1309AXW77_06385CjjRM3196_1311CjjRM3197_1311CJS3_1392A0W69_07665QZ67_01430N149_1256AB430_08160VC76_06500AR446_01680ATE51_00974YSQ_02385YSS_07030YSU_02410A6K30_02350CFT03427_1431CFF04554_1483CFF8240_1468CSG_16050CFV97608_1605CFTSP3_1495CFVI03293_1505CR44_07250CHL_1692CHH_1509CIG1485E_0398CIG2463D_0403CIG11343_0347CINS_1263UPTC4110_1286CONCH_1253UPTC3659_1523Cla_1300UPTC16701_1283UPTC16712_1302CD56_06695CPEL_1409CAQ16704_1312CSUB8521_1489CSUB8523_1585CVOL_1279
CVOL_1280
9CP013034408579A10None170-2020bp upstream of AR446_02110331hemagglutination protein15-537360 [0]AB430_07445FB1 [0]AR446_02110RM4661 [0]YSU_02825A6K30_02755
10CP013034408589G10None170-1010bp upstream of AR446_02110331hemagglutination protein15-537360 [0]AB430_07445FB1 [0]AR446_02110RM4661 [0]YSU_02825A6K30_02755
11CP013034498744G771820AR446_02585307hypothetical proteinBN867_11410C8J_1090CJ8421_05715RC25_05420CJM1cam_1127CJM1_1127MTVDSCj20_1151AR446_02585ATE51_01324YSQ_03270YSU_03305UPTC16701_1219CD56_06405
12CP013034582988G981690AR446_03010656hypothetical proteinN149_0993AB430_06575VC76_05155AR446_03010ATE51_01498YSQ_03705YSS_05720YSU_03750A6K30_03670CINS_1119CONCH_1111UPTC3659_1373UPTC16701_1131CPEL_1266CAQ16704_1150CSUB8521_1330CSUB8523_1431CVOL_1130
13CP013034593285G99430AR446_030501364restriction endonucleaseCj1051cA911_05085PJ16_05500PJ17_05405N135_01087N564_01019N565_01064N755_01057PJ18_05205PJ19_05765BN867_10440M635_00715
M635_00965
C8J_0992CJ8421_05225CJM1cam_1030CJH_05290CJSA_0994ICDCCJ07001_1013CJM1_1030MTVDSCj20_1057A0W68_05495H730_06230CJE1195AXW77_05180CjjRM3196_1070CjjRM3197_1070CJS3_1100A0W69_06450QZ67_01124N149_0987AB430_06540G157_03715VC76_05120AR446_03050ATE51_01514YSQ_03745YSS_05685YSU_03790A6K30_03710
14CP013034741393G11None168-1313bp upstream of AR446_03780305hypothetical proteinN149_0841
N149_0842
G157_04435VC76_04385AR446_03780ATE51_01810YSQ_04880A6K30_04445
15CP013034944186G99190AR446_04835257methyltransferaseCj1420cCJJ81176_1419A911_06906PJ16_07835N135_02250N564_02340N565_02420N755_02475PJ18_07255PJ19_07830JJD26997_1753BN867_06890M635_08895UC78_1362C8J_0641CJ8421_07145RC25_06635CJM1cam_0659CJH_07485CJSA_1351CJM1_0659MTVDSCj20_0698ERS445056_01536A0W68_03575H730_08055CjjRM1285_1416AXW77_06990A0W69_08260QZ67_01555AR446_04835YSQ_05930YSS_03110YSU_05580CFT03427_1580CFF04554_1630CFF8240_1628CSG_17620CFV97608_1755CFTSP3_1645CFVI03293_1652CR44_08030CINS_0302CONCH_1266UPTC3659_1405Cla_0312CD56_06730CSUB8521_0343CSUB8523_0326
16CP013034997915G8980AR446_05110420No annotation dataCj0617CJJ81176_0646A911_03015PJ16_03080PJ17_02995N135_01990N564_00606N565_00652N755_02060PJ18_03085PJ19_03345JJD26997_1051M635_07445UC78_1285CJ8421_03015CJH_03130CJSA_0585ICDCCJ07001_566ERS445056_00604A0W68_02910CJE0720CjjRM1285_0590AXW77_03025CjjRM3196_0596CjjRM3197_0596CJS3_0607A0W69_03955QZ67_00633N149_0590AB430_04500AR446_05110ATE51_02354YSQ_06210YSS_02830YSU_05855A6K30_05725CINS_0771
CINS_1271
CINS_0859
CONCH_0811
CONCH_1260
UPTC3659_0914Cla_1319
Cla_1307
Cla_0797
UPTC16712_0815CAQ16704_0743CSUB8521_1498
CSUB8521_0845
CSUB8523_1594
CSUB8523_0932
CVOL_0788
CVOL_1289
17CP0130341043126G771830AR446_05305366rod shape-determining protein RodACj1282CJJ81176_1297A911_06225PJ16_06915PJ17_06535N135_01314N564_01245N565_01286N755_01281PJ18_06340PJ19_07180JJD26997_0444BN867_12750M635_02095UC78_1232C8J_1225CJ8421_06385RC25_06095CJM1cam_1262CJH_06485
CJH_06400
CJSA_1220ICDCCJ07001_1228CJM1_1262MTVDSCj20_1286ERS445056_01391A0W68_06630H730_07360CJE1417CjjRM1285_1294AXW77_06310CjjRM3196_1296CjjRM3197_1296CJS3_1326A0W69_07590QZ67_01360N149_0551AB430_04305G157_05870VC76_02920AR446_05305ATE51_02432YSQ_06410YSS_02635YSU_06050A6K30_05920CCC13826_0511CCON33237_1397CCV52592_0473CFT03427_1192CFF04554_1249CFF8240_1222CSG_7720CFV97608_1273CFTSP3_1254CFVI03293_1218CR44_06060CGRAC_0704CHAB381_1290CHL_0588CHH_0550CIG1485E_1256CIG2463D_1347CIG11343_1209CINS_0583UPTC4110_0617CONCH_0617UPTC3659_0702Cla_0608UPTC16701_0608UPTC16712_0616CD56_03320CPEL_0675CAQ16704_0644CSUB8521_0645CSUB8523_0733CUREO_0953CVOL_0602
18CP0130341155445G10101840AR446_05885199citrate lyaseN149_0442AB430_03770G157_06420VC76_02330AR446_05885ATE51_03324YSQ_07640YSS_02015YSU_06650A6K30_06510
19CP0130341168142C9None16744bp downstream of AR446_05945402UDP-N-acetylmuramoylalanine--D-glutamate ligaseCj0432cCJJ81176_0458A911_02105PJ16_02130PJ17_02125N135_00480N564_00413N565_01975N755_00462PJ18_02130PJ19_02395JJD26997_1512BN867_04040M635_06500UC78_0416C8J_0407CJ8421_02165RC25_02140CJM1cam_0416CJH_02185CJSA_0404ICDCCJ07001_398CJM1_0416MTVDSCj20_0406ERS445056_00429A0W68_02095H730_02735CJE0482CjjRM1285_0408AXW77_02090CjjRM3196_0418CjjRM3197_0418CJS3_0421A0W69_03010QZ67_00437N149_0430AB430_03710G157_06485VC76_02270AR446_05945ATE51_03348YSQ_07700YSS_01955YSU_06710A6K30_06570CCC13826_0566CCON33237_1498CCV52592_1046CFT03427_1322CFF04554_1374CFF8240_1358CSG_14960CFV97608_1497CFTSP3_1385CFVI03293_1397CR44_06690CHAB381_1595CHL_0518CHH_1368CIG1485E_1368CIG2463D_1559CIG11343_1315CINS_0263UPTC4110_0272CONCH_0268UPTC3659_0286Cla_0266UPTC16701_0273UPTC16712_0275CD56_01340CPEL_0278CAQ16704_0277CSUB8521_0285CSUB8523_0279CUREO_1551CVOL_0263
20CP0130341582728G9900AR446_081901245restriction endonucleaseCj0031CJJ81176_0068A911_00150PJ16_00180PJ17_00185N135_00036N564_00030N565_00030N755_00030PJ18_00175PJ19_00180JJD26997_0043BN867_00300UC78_0040C8J_0034CJ8421_00165RC25_00010CJM1cam_0039CJH_00185CJSA_0032ICDCCJ07001_36CJM1_0039MTVDSCj20_0039ERS445056_00036A0W68_00175H730_00165CJE0031CjjRM1285_0039AXW77_00175CjjRM3196_0040CjjRM3197_0040CJS3_0031A0W69_01050QZ67_00037N149_0037AB430_01470G157_00150VC76_00185AR446_08190ATE51_00072YSQ_00185YSS_00195YSU_00200A6K30_00205CINS_0480UPTC4110_1431CONCH_1400UPTC3659_1667Cla_1457UPTC16701_1425UPTC16712_1445CD56_07380CPEL_1557CSUB8521_1649CSUB8523_1744CVOL_1446
21CP0130341598262G91010AR446_08250254iron-binding proteinCj0045cCJJ81176_0083A911_00220PJ16_00245PJ17_00250N135_00049N564_00043N565_00043N755_00043PJ18_00250PJ19_00245JJD26997_0060BN867_00440M635_04615UC78_0054C8J_0048CJ8421_00240RC25_00075CJM1cam_0054CJH_00260CJSA_0045ICDCCJ07001_49CJM1_0054MTVDSCj20_0053ERS445056_00050A0W68_00270H730_00240CJE0044CjjRM1285_0054AXW77_00240CjjRM3196_0054CjjRM3197_0054CJS3_0045A0W69_01120QZ67_00051N149_0049AB430_01410G157_00215VC76_00250AR446_08250ATE51_00096YSQ_00270YSS_00260YSU_00260A6K30_00265