Class a: All alpha proteins
Class e: Multi-domain proteins (alpha and beta)
Class i: Low resolution protein structures
Class b: All beta proteins
Class f: Membrane and cell surface proteins and peptides
Class j: Peptides
Class c: Alpha and beta proteins (a/b)
Class g: Small proteins
Class k: Designed proteins
Class d: Alpha and beta proteins (a+b)
Class h: Coiled coil proteins
SCOP Classes with more than 5 compatible hydrophobic patterns
Class: Peptides
Folds
Acetylcholine receptor fragment (residues alpha 67-76)
alpha-2a adrenergic receptor pepride t3-i2
alpha-helical hairpin of p8mtcp1
alpha-lactalbumin peptide model
Amyloid peptides
Angiotensin
Antennapedia homeodomain fragments
Antifreeze polypeptide HPLC-6
Antimicrobial beta-hairpin
Antimicrobial helix
Arg-rich RNA binding peptides
Atrial natriuretic peptide
Barstar fragment
beta-Catenine bound non-globular protein regions
Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide
Bradykinin
BRCA2 BRC4 repeat
cAMP and cGMP phosphodiesterase (PDE) fragments
Cannabinoid receptor 1 (CB1) fragment
Capsid protein major homology region peptide analog
Catestatin fragment from chromogranin A
CD4 receptor peptide, res. 403-419
Cholecystokinin receptor fragments
Coagulation factor VIII, membrane-binding peptide
Coat protein-binding domain of bacteriophage P22 scaffolding protein
Compstatin
Conantokin
Conotoxins
Contryphan-R
Corticotropin releasing hormone
C-terminal fragment of thermolysin
C-terminal negative regulatory domain of p53
delta toxin-like
DNA-binding domains of HMG-I(Y)
Endothelin-like
Fragment 671-690 of the rabbit skeletal dihydropyridine receptor
Fragments of apolipoproteins
Fragments of bowman-birk inhibitor
FxFG nucleoporin repeats
Gelsolin fragment (residues 150-169)
GroES fragments
Heat-stable enterotoxin (HSE)
Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv
Hepatitis C virus N-terminal capsid protein fragment 2-45
Histone H3 C-terminal fragment 130-135
HIV-1 envelope gp120 protein fragments
HIV-1 gp41 fragments
HIV-1 Nef protein fragments
Human glutathione reductase (HGR) inhibitor
Immunoreceptor tyrosine kinase activation motif, ITAM
Inactivation gate of potassium and sodium channels
Influenza hemagglutinin fragments
Integrin fragments
Isolated insulin B-chain
Kappa-hefutoxin-like
Lantibiotic peptides
Liposaccharide-binding protein CAP18 (residues 106-137)
Mellitin-like toxins
Membrane ion channel-forming peptide antibiotics containing D-aminoacids
Membrane-bound antimicrobial peptides
Microcin J25
MoMLV p15 fragment (residues 409-426)
N-terminal fragment of gastric H/K-ATPase
N-terminal hairpin of ubiquitin (residues 1-17)
P27(KIP1) fragment 22-106
pak1 autoregulatory domain
Papillomavirus e6-interacting peptide of e6ap
Parathyroid hormone fragments (residues between 1 and 39)
Peptide derived from p-21 activated kinase
Peptide hormones
Phosphocholine cytidylyltransferase membrane-binding peptides
Phospholamban fragments
Pilin fragments
Pituitary adenylate cyclase activating polypeptide, pacap21
Polymorphic antigen SPAM-H1 (residues 90-127)
Prepeptide of 5-ALAS
prion protein fragment
Proline pipe
PSP1-like
Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5.
Ribosomal protein L10
RP71935
Sheep myeloid antimicrobial peptide SMAP29 based peptides
Smad-binding domain of Sara
Small subunit C-terminal inhibitory peptide of ribonucleotide reductase
Synaptobrevin-II fragments
Syndecan-4 cytoplasmic domain
TBP-binding domain of the transcription factor IIIb Brf1 subunit
Tertiapin
the cytoplasmic N-terminus of the bk beta-subunit kcnmb2
Thrombomodulin EGF domain fragment (residues 409-426)
Thymosin beta9
Topogenic peptides
Transactivation domain
Transactivation protein TAT
Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350)
Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71)
Translocated intimin receptor (tir) intimin-binding domain
Transmembrane helical fragments
Troponin I fragments
Trypsin inhibitor SFTIf-1
Tumor suppressor protein p19-ARF fragment
Ubiquitin interacting motif (UIM)
VMIP-II fragment
VPR protein fragments
Class a: All alpha proteins
Class e: Multi-domain proteins (alpha and beta)
Class i: Low resolution protein structures
Class b: All beta proteins
Class f: Membrane and cell surface proteins and peptides
Class j: Peptides
Class c: Alpha and beta proteins (a/b)
Class g: Small proteins
Class k: Designed proteins
Class d: Alpha and beta proteins (a+b)
Class h: Coiled coil proteins