Class a: All alpha proteins Class e: Multi-domain proteins (alpha and beta) Class i: Low resolution protein structures
Class b: All beta proteins Class f: Membrane and cell surface proteins and peptides Class j: Peptides
Class c: Alpha and beta proteins (a/b) Class g: Small proteins Class k: Designed proteins
Class d: Alpha and beta proteins (a+b) Class h: Coiled coil proteins SCOP Classes with more than 5 compatible hydrophobic patterns

Class: Peptides

Folds

  • Acetylcholine receptor fragment (residues alpha 67-76)
  • alpha-2a adrenergic receptor pepride t3-i2
  • alpha-helical hairpin of p8mtcp1
  • alpha-lactalbumin peptide model
  • Amyloid peptides
  • Angiotensin
  • Antennapedia homeodomain fragments
  • Antifreeze polypeptide HPLC-6
  • Antimicrobial beta-hairpin
  • Antimicrobial helix
  • Arg-rich RNA binding peptides
  • Atrial natriuretic peptide
  • Barstar fragment
  • beta-Catenine bound non-globular protein regions
  • Bhpbr3, the Baff-binding loop of br3 embedded in a beta-hairpin peptide
  • Bradykinin
  • BRCA2 BRC4 repeat
  • cAMP and cGMP phosphodiesterase (PDE) fragments
  • Cannabinoid receptor 1 (CB1) fragment
  • Capsid protein major homology region peptide analog
  • Catestatin fragment from chromogranin A
  • CD4 receptor peptide, res. 403-419
  • Cholecystokinin receptor fragments
  • Coagulation factor VIII, membrane-binding peptide
  • Coat protein-binding domain of bacteriophage P22 scaffolding protein
  • Compstatin
  • Conantokin
  • Conotoxins
  • Contryphan-R
  • Corticotropin releasing hormone
  • C-terminal fragment of thermolysin
  • C-terminal negative regulatory domain of p53
  • delta toxin-like
  • DNA-binding domains of HMG-I(Y)
  • Endothelin-like
  • Fragment 671-690 of the rabbit skeletal dihydropyridine receptor
  • Fragments of apolipoproteins
  • Fragments of bowman-birk inhibitor
  • FxFG nucleoporin repeats
  • Gelsolin fragment (residues 150-169)
  • GroES fragments
  • Heat-stable enterotoxin (HSE)
  • Heparin binding site of non collagenous domain I (nc1) of collagen facit xiv
  • Hepatitis C virus N-terminal capsid protein fragment 2-45
  • Histone H3 C-terminal fragment 130-135
  • HIV-1 envelope gp120 protein fragments
  • HIV-1 gp41 fragments
  • HIV-1 Nef protein fragments
  • Human glutathione reductase (HGR) inhibitor
  • Immunoreceptor tyrosine kinase activation motif, ITAM
  • Inactivation gate of potassium and sodium channels
  • Influenza hemagglutinin fragments
  • Integrin fragments
  • Isolated insulin B-chain
  • Kappa-hefutoxin-like
  • Lantibiotic peptides
  • Liposaccharide-binding protein CAP18 (residues 106-137)
  • Mellitin-like toxins
  • Membrane ion channel-forming peptide antibiotics containing D-aminoacids
  • Membrane-bound antimicrobial peptides
  • Microcin J25
  • MoMLV p15 fragment (residues 409-426)
  • N-terminal fragment of gastric H/K-ATPase
  • N-terminal hairpin of ubiquitin (residues 1-17)
  • P27(KIP1) fragment 22-106
  • pak1 autoregulatory domain
  • Papillomavirus e6-interacting peptide of e6ap
  • Parathyroid hormone fragments (residues between 1 and 39)
  • Peptide derived from p-21 activated kinase
  • Peptide hormones
  • Phosphocholine cytidylyltransferase membrane-binding peptides
  • Phospholamban fragments
  • Pilin fragments
  • Pituitary adenylate cyclase activating polypeptide, pacap21
  • Polymorphic antigen SPAM-H1 (residues 90-127)
  • Prepeptide of 5-ALAS
  • prion protein fragment
  • Proline pipe
  • PSP1-like
  • Rack1 interaction site of the CAMP-specific phosphodiesterase pde4d5.
  • Ribosomal protein L10
  • RP71935
  • Sheep myeloid antimicrobial peptide SMAP29 based peptides
  • Smad-binding domain of Sara
  • Small subunit C-terminal inhibitory peptide of ribonucleotide reductase
  • Synaptobrevin-II fragments
  • Syndecan-4 cytoplasmic domain
  • TBP-binding domain of the transcription factor IIIb Brf1 subunit
  • Tertiapin
  • the cytoplasmic N-terminus of the bk beta-subunit kcnmb2
  • Thrombomodulin EGF domain fragment (residues 409-426)
  • Thymosin beta9
  • Topogenic peptides
  • Transactivation domain
  • Transactivation protein TAT
  • Transducin alpha-1 subunit rhodopsin binding domain (res. 340-350)
  • Transducin gamma-t1 subunit rhodopsin bound fragment (res. 60-71)
  • Translocated intimin receptor (tir) intimin-binding domain
  • Transmembrane helical fragments
  • Troponin I fragments
  • Trypsin inhibitor SFTIf-1
  • Tumor suppressor protein p19-ARF fragment
  • Ubiquitin interacting motif (UIM)
  • VMIP-II fragment
  • VPR protein fragments


    Class a: All alpha proteins Class e: Multi-domain proteins (alpha and beta) Class i: Low resolution protein structures
    Class b: All beta proteins Class f: Membrane and cell surface proteins and peptides Class j: Peptides
    Class c: Alpha and beta proteins (a/b) Class g: Small proteins Class k: Designed proteins
    Class d: Alpha and beta proteins (a+b) Class h: Coiled coil proteins