Last updated: 2019-07-26

Checks: 2 0

Knit directory: MAGL/

This reproducible R Markdown analysis was created with workflowr (version 1.4.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.


Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    ._.Renviron
    Ignored:    ._.gitignore
    Ignored:    ._README.md
    Ignored:    ._Snakefile
    Ignored:    ._config.yaml
    Ignored:    ._session_info.txt
    Ignored:    .snakemake/
    Ignored:    MAGL/.DS_Store
    Ignored:    MAGL/.RData
    Ignored:    MAGL/.Rhistory
    Ignored:    MAGL/._.DS_Store
    Ignored:    MAGL/._.Rprofile
    Ignored:    MAGL/._.gitignore
    Ignored:    MAGL/._data
    Ignored:    MAGL/analysis/._refs.bib
    Ignored:    MAGL/analysis/0-preprocessing_cache/
    Ignored:    MAGL/analysis/1-clustering_cache/
    Ignored:    MAGL/analysis/3-differential_cache/
    Ignored:    MAGL/analysis/4-visualization_cache/
    Ignored:    MAGL/analysis/5-geneset_cache/
    Ignored:    MAGL/analysis/6-more_cache/
    Ignored:    MAGL/code/._utils.R
    Ignored:    MAGL/data/
    Ignored:    MAGL/output/
    Ignored:    data/
    Ignored:    figures/
    Ignored:    meta/
    Ignored:    results/
    Ignored:    scripts/.DS_Store
    Ignored:    scripts/._.DS_Store
    Ignored:    scripts/._apply_scdd.R
    Ignored:    scripts/._plot_perf_by_expr.R
    Ignored:    scripts/._plot_perf_by_ss.R
    Ignored:    scripts/._plot_runtimes.R
    Ignored:    scripts/._prep_magl.R
    Ignored:    scripts/._prep_sim.R
    Ignored:    scripts/._session_info.R
    Ignored:    scripts/._sim_qc.R
    Ignored:    scripts/._utils.R

Untracked files:
    Untracked:  .RData
    Untracked:  .RDataTmp
    Untracked:  .Rhistory
    Untracked:  MAGL/code/utils.R
    Untracked:  MAGL/current
    Untracked:  figs/

Unstaged changes:
    Modified:   MAGL/.Rprofile
    Deleted:    scripts/plot_perf_by_lfc.R
    Deleted:    scripts/plot_sim_ex.R
    Deleted:    scripts/prep_data.R

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.


These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
Rmd e7c4ba5 HelenaLC 2019-07-26 fix link
html 33633dd HelenaLC 2019-07-26 updt landing page
Rmd 033e536 HelenaLC 2019-07-11 update landing page
html 033e536 HelenaLC 2019-07-11 update landing page
Rmd 2e6c8b3 HelenaLC 2019-05-20 update
Rmd 61c0b06 HelenaLC 2019-05-20 update
Rmd faf858d HelenaLC 2019-05-17 add DS & geneset analysis
Rmd d2021f0 HelenaLC 2019-05-03 update landing page
html d2021f0 HelenaLC 2019-05-03 update landing page
Rmd eaed7ec HelenaLC 2019-03-11 initial commit