Last updated: 2019-07-26
Checks: 2 0
Knit directory: MAGL/
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Ignored files:
Ignored: .DS_Store
Ignored: ._.Renviron
Ignored: ._.gitignore
Ignored: ._README.md
Ignored: ._Snakefile
Ignored: ._config.yaml
Ignored: ._session_info.txt
Ignored: .snakemake/
Ignored: MAGL/.DS_Store
Ignored: MAGL/.RData
Ignored: MAGL/.Rhistory
Ignored: MAGL/._.DS_Store
Ignored: MAGL/._.Rprofile
Ignored: MAGL/._.gitignore
Ignored: MAGL/._data
Ignored: MAGL/analysis/._refs.bib
Ignored: MAGL/analysis/0-preprocessing_cache/
Ignored: MAGL/analysis/1-clustering_cache/
Ignored: MAGL/analysis/3-differential_cache/
Ignored: MAGL/analysis/4-visualization_cache/
Ignored: MAGL/analysis/5-geneset_cache/
Ignored: MAGL/analysis/6-more_cache/
Ignored: MAGL/code/._utils.R
Ignored: MAGL/data/
Ignored: MAGL/output/
Ignored: data/
Ignored: figures/
Ignored: meta/
Ignored: results/
Ignored: scripts/.DS_Store
Ignored: scripts/._.DS_Store
Ignored: scripts/._apply_scdd.R
Ignored: scripts/._plot_perf_by_expr.R
Ignored: scripts/._plot_perf_by_ss.R
Ignored: scripts/._plot_runtimes.R
Ignored: scripts/._prep_magl.R
Ignored: scripts/._prep_sim.R
Ignored: scripts/._session_info.R
Ignored: scripts/._sim_qc.R
Ignored: scripts/._utils.R
Untracked files:
Untracked: .RData
Untracked: .RDataTmp
Untracked: .Rhistory
Untracked: MAGL/code/utils.R
Untracked: MAGL/current
Untracked: figs/
Unstaged changes:
Modified: MAGL/.Rprofile
Deleted: scripts/plot_perf_by_lfc.R
Deleted: scripts/plot_sim_ex.R
Deleted: scripts/prep_data.R
Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.
These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote
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File | Version | Author | Date | Message |
---|---|---|---|---|
Rmd | e7c4ba5 | HelenaLC | 2019-07-26 | fix link |
html | 33633dd | HelenaLC | 2019-07-26 | updt landing page |
Rmd | 033e536 | HelenaLC | 2019-07-11 | update landing page |
html | 033e536 | HelenaLC | 2019-07-11 | update landing page |
Rmd | 2e6c8b3 | HelenaLC | 2019-05-20 | update |
Rmd | 61c0b06 | HelenaLC | 2019-05-20 | update |
Rmd | faf858d | HelenaLC | 2019-05-17 | add DS & geneset analysis |
Rmd | d2021f0 | HelenaLC | 2019-05-03 | update landing page |
html | d2021f0 | HelenaLC | 2019-05-03 | update landing page |
Rmd | eaed7ec | HelenaLC | 2019-03-11 | initial commit |
scater
scran
scran
marker-gene expressions by clusteredgeR
camera