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Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank128Aligned Residues226
% Identity15%Templatec5ic7A_
PDB info PDB header:structural proteinChain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of the wd domain of utp18
Resolution2.33 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.... .....120.........130.........140.........150...
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Query Sequence  QWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEE
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Template Sequence  RDIPDTHKAAISSLAFHPRYPILLSSSTSSIMYLHKLDA. . . . . . . . . . . . . . . . . . . . .
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   267..270.........280.........290.........300.....
 
   154.....160.........170.........180.........190.........200.........
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Query Sequence  QTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHT. . . .
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Template Sequence  SAYPTPNPLLTSVHVKRTDLRRAAFVGPDGGEIIFAGRRRYFHCWNLSSGLVKKVSKIQG
Template Known Secondary structure  T
SSSSS

TT



TTTT

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TT
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   306...310.........320.........330.........340.........350.........360.....
 
   210.........220.........230..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WVPSVDSSKNSPNEQEPLLFAQW
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Template Sequence  HQKEQRTMERFRVSPCGRYMALVASDKKGGGMLNIINVGTMQWIAQARIDGRHGVADFAW
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GGG
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   366...370.........380.........390.........400.........410.........420.....
 
   233......240.........250.........260..
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Query Sequence  VPNSDSVVLTGSYSGSLVFTDIRTKEGSTS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  WSDGN. GLTIAGRDGQVTEWSMITRRTVGIWRDEGTVMALGGRNGPAELGGDRWVAIGSN
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TTSS.TTSTTTT





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   426...430 .........440.........450.........460.........470.........480....
 
   263......270.........280.........290... .....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . KLSLPARRGCMARCADFNTLLPFALATASSD. . GIISV
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Template Sequence  SGILNVYDRNDLIEIRIKKYPTPTRVFEQLTTSISVVAFSP. DGQLLAFGSQHKKDALRL
Template Known Secondary structure  TS
GGGGB


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S
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S



T.TSSTTSTT
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   489490.........500.........510.........520......... 530.........540.......
 
   299300......... 310.........320.........330.........340......
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Query Sequence  FDCRYPSTAVR. . . TIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLR
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Template Sequence  VHLP. SCTVYRNWPTEQTPLGRVTAIAFSS. KSDVLAVGNDVGRVRLWEIR
Template Known Secondary structure  TT.TT
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   569570.. .......580.........590....... ..600.........610.......
 
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No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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