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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank146Aligned Residues261
% Identity16%Templatec1nexD_
PDB info PDB header:ligase, cell cycleChain: D: PDB Molecule:cdc4 protein; PDBTitle: crystal structure of scskp1-sccdc4-cpd peptide complex
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   72.......80... ......90........ .100.........110.... .....120.......
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Query Sequence  TSGACVGLLTME. SAEAKLSGMSKMQWL. . NLPSTEPLSSVEWCEG. SLLVGTSRGRIVV
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Template Sequence  LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV
Template Known Secondary structure  TTTTTTTTT

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   388.390.........400.........410.........420.........430.........440.......
 
   128.130...... ...140.........150.........160.........170.........180...
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Query Sequence  ADVSPQTVE. . . DSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVC.
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Template Sequence  WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKDYPLVFHTPEE
Template Known Secondary structure  TTTT


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   448.450.........460.........470.........480.........490.........500.......
 
   184.....190.........200.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . SSSVVAVCDSRAMVWDVKGATQPVHT. . . . . . . . . . . .
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Template Sequence  NPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIY
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   519520.........530.........540.........550.........560.........570........
 
   210.........220.........230.........240.........250
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Query Sequence  . . . . . . . . . . . . . . . . . . . WVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLV
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Template Sequence  DHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD. . . KFLVSAAADGSIR
Template Known Secondary structure  TTTTTTSTTT



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   579580.........590.........600.........610.........620.. .......630.....
 
   251........260.........270.........280.........290.........300.........310
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Query Sequence  FTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRT
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Template Sequence  GWDANDYS. . . RKFSYHHTNLSAITTFYV. . . SDNILVSGS. ENQFNIYNLR. SGKLVHA
Template Known Secondary structure  TTT

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   656...660... ......670.........680. ........690 .........700 .......
 
   311........320.........330......... 340.....
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Query Sequence  . IPSLHGDIMSLKYLKLHSDIIATGGVDGS. . VVLWNL
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Template Sequence  NILKDADQIWSVNFKG. . KTLVAAVEKDGQSFLEILDF
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TTTT
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   708.710.........720... ......730.........740...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Lawrence Kelley, Michael Sternberg 
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