Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.91%DateMon Feb 25 17:28:45 GMT 2019
Rank170Aligned Residues245
% Identity15%Templatec4jxmA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:u3 small nucleolar rna-interacting protein 2; PDBTitle: crystal structure of rrp9 wd40 repeats
Resolution1.92 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   90.........100.........110.... .....120.........130........ .140.
Predicted Secondary structure 













..











......


Query SS confidence 
























. .























. . . . . .


Query Sequence  SGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVEDS. . . . . . DGE
Query Conservation 


 
 








 








.. 




 










 

  
...... 
 
Alig confidence 
























..























......


Template Conservation   
    
  
 

   
  
  
 

  
 
 
 
  
 


                 
Template Sequence  APASADIRVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESGRKLHVIPRAKPPGH
Template Known Secondary structure 


TTT


SS

TTSSTTS
TTT






S

Template Predicted Secondary structure 































Template SS confidence 



























































   133......140.........150.........160.........170.........180.........190..
 
   142.......150.........160.........170......... 180........
Predicted Secondary structure 






























.............




Query SS confidence 





































. . . . . . . . . . . . .








Query Sequence  LQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . AAVCSSSVV
Query Conservation 
    


 
 

  
 


  

 
  



 

  
.............   





Alig confidence 





































.............








Template Conservation     
                                                        
Template Sequence  SSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFTGHRDAVSGLAFRRGTHQLYS
Template Known Secondary structure  SS

TTS
TTS
TTT




SS

TTSS
Template Predicted Secondary structure 




















































Template SS confidence 



























































   199200.........210.........220.........230.........240.........250........
 
   189190.........200.........210.........220.........230.........240........
Predicted Secondary structure 



































Query SS confidence 



























































Query Sequence  AVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGS
Query Conservation 



 










 

  
  
   
 

 


  
 















 


Alig confidence 














...........






















.









Template Conservation                 ...........                       .          
Template Sequence  TSHDRSVKVWNVAEN. . . . . . . . . . . SYVETLFGHQDAVAALDALSREC. CVTAGGRDGT
Template Known Secondary structure  TTSGGGT...........

SS



SSS.
BTT
Template Predicted Secondary structure 









...........






















.









Template SS confidence 



























































   259260.........270... ......280.........290...... ...300......
 
   249250.........260......
Predicted Secondary structure 












..........................................
Query SS confidence 

















. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  LVFTDIRTKEGSTSKLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 









  



 
..........................................
Alig confidence 

















..........................................
Template Conservation                                                              
Template Sequence  VRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPLALQREAHG
Template Known Secondary structure  TTTT

SS
TTTTS
TT
SS
STTTT
Template Predicted Secondary structure 






















































Template SS confidence 



























































   307..310.........320.........330.........340.........350.........360......
 
   267..270.........280.........290.........300.........310. .......
Predicted Secondary structure  .....





















...




Query SS confidence  . . . . .












































. . .






Query Sequence  . . . . . PARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTI. . . PSLHGDI
Query Conservation  .....
 

   
 





 

 





 









 
 
 



... 



 
Alig confidence  .....














.



















.







...






Template Conservation                      .        
 

 
 


  .       
     
   
Template Sequence  LRGEPGLEQPFWISSVAALL. NTDLVATGSHSSCVRLWQCG. EGFRQLDLLCDIPLVGFI
Template Known Secondary structure  SSTT






T.TSS
SSS
.GGG



S
Template Predicted Secondary structure 













.









.









Template SS confidence 



























































   367..370.........380...... ...390.........400...... ...410.........420....
 
   319320.........330..... ....340.........
Predicted Secondary structure 






..








Query SS confidence 
















. .













Query Sequence  MSLKYLKLHSDIIATGG. . VDGSVVLWNLRSLP
Query Conservation   





 








..











 
Alig confidence 






.








..













Template Conservation    
  

.

  
 
  
 

  
 

    
 
Template Sequence  NSLKFSS. SGDFLVAGVGQEHRLGRWWRIKEAR
Template Known Secondary structure 
S.SSSSS
TT
SS


TT

Template Predicted Secondary structure 

.












Template SS confidence 
































   425....430. ........440.........450......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D