Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank78Aligned Residues307
% Identity14%Templatec5cxcA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:ribosome biogenesis protein ytm1; PDBTitle: structure of ytm1 bound to the c-terminal domain of erb1 in p 65 2 22 space group
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60..
Predicted Secondary structure 











































Query SS confidence 



























































Query Sequence  ESIIQVPLYVSTSAWRKEVQLRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRENV
Query Conservation 






 













 

 

 
 







 

 


 






  


 
Alig confidence 







































..........









Template Conservation           
 
              

   
 

 



..........
  
 


 
Template Sequence  VYEASFEHDDWVSAVDVLSATSPAGRWSSAANSSAAVQPG. . . . . . . . . . QERVLSASYD
Template Known Secondary structure 

SS

SSSSS
SS



SS..........

TT
Template Predicted Secondary structure 


























..........



Template SS confidence 



























































   103......110.........120.........130.........140.. .......150..
 
   63......70.........80.........90.........100.........110.... .....120.
Predicted Secondary structure 




































.
Query SS confidence 



















































.






Query Sequence  LAIGLNPLSTSGACVGLLTMESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. SLLVGTS
Query Conservation   

 
  

 

  
 


 



  



 
 








 








. 




 
Alig confidence 











................























.






Template Conservation 






     ................          

   
  
  
      
   
Template Sequence  GLLRIWNASGSV. . . . . . . . . . . . . . . . IATSPSGSHGGHTASIKAAKFLTSDRLASAGM
Template Known Secondary structure  S
TTS
................


GGGTS
SS
SSSST
Template Predicted Secondary structure 






................










Template SS confidence 



























































   153......160.... .....170.........180.........190......
 
   122.......130... ......140.........150.........160.........170...
Predicted Secondary structure 





........
































Query SS confidence 











. . . . . . . .







































Query Sequence  RGRIVVADVSPQ. . . . . . . . TVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLV
Query Conservation 










 ........

  
 
 
    


 
 

  
 


  

 
  



Alig confidence 











........







































Template Conservation 
                                                           
Template Sequence  DRTVRVWKYTESDHFTGELKPTLELYGHTGSVDWLDVDGHSKHILTASADGAIGFWSASK
Template Known Secondary structure  TS
SSS


SS
TTTTTTS

S
Template Predicted Secondary structure 































Template SS confidence 



























































   197..200.........210.........220.........230.........240.........250......
 
   174..... 180.........190.........200........
Predicted Secondary structure 





.........................

















Query SS confidence 





. . . . . . . . . . . . . . . . . . . . . . . . .




























Query Sequence  RCVRSN. . . . . . . . . . . . . . . . . . . . . . . . . AAVCSSSVVAVCDSRAMVWDVKGATQPVH
Query Conservation   

  
.........................   









 










 

 
Alig confidence 





.........................




























Template Conservation                                    
                         
Template Sequence  ASAPEPDASLLPGTSSVSTAQRGPLGLWSIHTAPATAAIFDPRDRTVAYSASQDHTVRTL
Template Known Secondary structure  SS




SSSS



SS




S

SS

SS
TTTTS
Template Predicted Secondary structure 





























Template SS confidence 



























































   257..260.........270.........280.........290.........300.........310......
 
   209210.........220.........230.........240.........250.........260........
Predicted Secondary structure 





































Query SS confidence 



























































Query Sequence  TWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPA
Query Conservation   
  
   
 

 


  
 















 












  



 

 
Alig confidence 




























.




















....




Template Conservation                               .                     ....     
Template Sequence  DLTTGQVVSTLTLTHPLLSLSALTRTTSP. LLAAGTSARHITMVDPRATTS. . . . VMTLR
Template Known Secondary structure  SSSS

SS




S
.TTS







....S
Template Predicted Secondary structure 


















.









....




Template SS confidence 



























































   326...330.........340.........350.... .....360.........370..... ....380
 
   269270.........280.........290.........300.. .......
Predicted Secondary structure 















...................



Query SS confidence 

































. . . . . . . . . . . . . . . . . . .






Query Sequence  RRGCMARCADFNTLLPFALATASSDGIISVFDCR. . . . . . . . . . . . . . . . . . . YPSTAVR
Query Conservation 

   
 





 

 





 









................... 
 
 

Alig confidence 

































...................






Template Conservation       
  
  

     
 


 

 
 


  
              
          
Template Sequence  GHANKVVSLSPSPENEYSLVSGSHDGTCRVWDLRSVRPATKEEGGVSEPVYVIERESWKR
Template Known Secondary structure 

SS

SS
TTTTTTT

B


S





S
TT


Template Predicted Secondary structure 



























Template SS confidence 



























































   386...390.........400.........410.........420.........430.........440.....
 
   310.........320.........330.........340...
Predicted Secondary structure 















Query SS confidence 

































Query Sequence  TIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLW
Query Conservation 

 



 
 





 
















Alig confidence 















.

..












Template Conservation     

   
  
    .  ..
 


 
  
 

Template Sequence  PVAGDGCKVFSVVWDK. LG. . IFSGGEDKKVQVN
Template Known Secondary structure 
STTTTT


S.S
..
TTS
Template Predicted Secondary structure 





.
..



Template SS confidence 

































   455....460.........470 .. .......480.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D