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Job Descriptionexo99____
Confidence99.09%DateMon Feb 25 17:28:45 GMT 2019
Rank267Aligned Residues167
% Identity8%Templatec3c5mC_
PDB info PDB header:lyaseChain: C: PDB Molecule:oligogalacturonate lyase; PDBTitle: crystal structure of oligogalacturonate lyase (vpa0088)2 from vibrio parahaemolyticus. northeast structural3 genomics consortium target vpr199
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   207..210.........220.........230 .........240.........250.. .......
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Query Sequence  VHTWVPSVDSSKNSPNEQEPLLFA. . . . . QWVPNSDSVVLTGSYSGSLVFT. . DIRTKEG
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Template Sequence  TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA
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   13......20.........30.........40.........50.........60.........70..
 
   260.........270.........280.........290.........300..... ....310........
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Query Sequence  STSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPS. TAVRTIPSLHGDI
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Template Sequence  . . . . VQLTEGKGDNTFGGFIST. DERAFFYVKNELNLXKVDLETLEEQVIYTVDEEWKGY
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   73......80.........90 .........100.........110.........120.......
 
   319320.........330...... ...340.........350......
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Query Sequence  MSLKYLKLHSDIIATGGV. . . . . . . . . . . . . . . . . . . . . . DGSVVLWNLRSLPTYRVGRA
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Template Sequence  GTWVANS. DCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD
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   128.130.... .....140.........150.........160.........170.........180......
 
   357..360.........370.........380...
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Query Sequence  QYKCPVFDLITTPWSVEQHVIGVTCGG
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Template Sequence  . . TAWLGHPIYRP. . FDDSTVGFCHEG
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   187..190....... ..200.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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