Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank120Aligned Residues273
% Identity11%Templatec5m89B_
PDB info PDB header:splicingChain: B: PDB Molecule:spliceosome wd40 sc; PDBTitle: spliceosome component
Resolution1.61 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.........80... ......90.........100 .........110.........120....
Predicted Secondary structure 












.











.










Query SS confidence 
















.
















.























Query Sequence  LNPLSTSGACVGLLTME. SAEAKLSGMSKMQWLNL. PSTEPLSSVEWCEGSLLVGTSRGR
Query Conservation 
  

 

  
 


 
.


  



 
 




.



 








 




 


Alig confidence 
















.
















.























Template Conservation        
 

  



  

 
 


               
  
        
   
  
Template Sequence  TQASSLDLENECAAVGGLDGKLDIYSVVANKVERTLDIGEPVTATEWTGTKVVIGTAKGW
Template Known Secondary structure 
STTTTSTTTT
SS
TTTTS
Template Predicted Secondary structure 
























Template SS confidence 



























































   204.....210.........220.........230.........240.........250.........260...
 
   125....130.........140.........150.........160.........170.........180....
Predicted Secondary structure 















































Query SS confidence 



























































Query Sequence  IVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCS
Query Conservation 







 

  
 
 
    


 
 

  
 


  

 
  



 

  
   

Alig confidence 




.





















































Template Conservation 
    .                                
                     
Template Sequence  VKVYD. AGRESATFQTHAGPVTGLAVHPGGRILASVGVDKSFVFYDLETGERVARGYADA
Template Known Secondary structure  .TT

SS

TTSSTTSTTTT
SS
Template Predicted Secondary structure 




.
















































Template SS confidence 



























































   264.... .270.........280.........290.........300.........310.........320..
 
   185....190.........200.........210.........220.........230.........240....
Predicted Secondary structure 
































Query SS confidence 



























































Query Sequence  SSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGS
Query Conservation 







 










 

  
  
   
 

 


  
 















Alig confidence 



























































Template Conservation                                                              
Template Sequence  ALTTCAFHPDGNLFAAGTQTGHILVFHTTTLEQAESFPLGTPIQALAFSENGFWFAATGK
Template Known Secondary structure 

TTSSTTSTTT


SS

TTSST
Template Predicted Secondary structure 
























































Template SS confidence 



























































   323......330.........340.........350.........360.........370.........380..
 
   245....250.........260.........270.........280.........290.........300....
Predicted Secondary structure 



































Query SS confidence 



























































Query Sequence  YSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYP
Query Conservation   












  



 

 

   
 





 

 





 









 
Alig confidence 













...







































..
Template Conservation          
     ...                  
  
  
   

 
  
 

  .. 
Template Sequence  GTSSVTIFDLRKSG. . . AAAAVKELQTGEVLSISWDYTGQYLATGGGTGVTVQMYTK. . A
Template Known Secondary structure  T
STTS
G...GGG
S

S
TTS

SS
G..G
Template Predicted Secondary structure 







...




















..
Template SS confidence 



























































   383......390...... ...400.........410.........420.........430...... .
 
   305....310.........320.........330.........340......
Predicted Secondary structure 



















Query SS confidence 









































Query Sequence  STAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLR
Query Conservation   
 



 



 
 





 



















Alig confidence 




















.



















Template Conservation               
  
  
 .
   
 
 
 

 
 
   
Template Sequence  TKSWSEPVRLGMPVVGVKWGG. EAKRLVVVSREGVVSVLGKK
Template Known Secondary structure  GT



S
G.GGS

TTS

Template Predicted Secondary structure 








.







Template SS confidence 









































   438.440.........450........ .460.........470........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D