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Job Descriptionexo99____
Confidence99.96%DateMon Feb 25 17:28:45 GMT 2019
Rank55Aligned Residues287
% Identity10%Templatec4uerb_
PDB info PDB header:translationChain: B: PDB Molecule:us2; PDBTitle: 40s-eif1-eif1a-eif3-eif3j translation initiation complex from2 lachancea kluyveri
Resolution6.47 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90..... ....100.........110.... .....120..
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Query Sequence  NPLSTSGACVGLLTMESAEAKLSGMSKM. . . QWLNLPSTEPLSSVEWCEG. . SLLVGTSR
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Template Sequence  WLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQ
Template Known Secondary structure  GGG
TT



SS

SS

TT
SSSSS

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SS
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   219220.........230.........240.........250.........260.........270........
 
   123......130.........140.........150.........160.........170.........180..
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Query Sequence  GRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAV
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Template Sequence  G. VTAWGGPNFDRLRRFYHPD. VRNSSVSPNEKYLVTFSTEPIIVEEDNEFSPFTKKN. .
Template Known Secondary structure  .TTTT
TT.
TTS
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TT
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GGG..
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   279 280.........290........ .300.........310.........320.........330....
 
   183......190.........200.........210.........220........ .230.........
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Query Sequence  CSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLL. . . FAQWVPNSDSV
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Template Sequence  . . . . . . . . EGHQLCIWDIASG. . . . . . . . . . . LLMATFPVIKSPYLKWPLVRWSYNDK. Y
Template Known Secondary structure  ........TT

TTT
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TT

S
SS
TTSS.
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   335....340....... ..350.........360.........370... .
 
   240.........250.........260.........270.........280.........290.....
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Query Sequence  VLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGI. . . .
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Template Sequence  CARMVGDSLIVHDATKNFMP. . . . LEAKALKPSGIRDFSFAP. EGVKLQPFRNGDEPSVL
Template Known Secondary structure  TTGGGTT....


GGGS
BS


S.S
B

SS

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B
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   375....380.........390.... .....400.........410.. .......420.........
 
   296...300.........310.........320.........330.........340.
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Query Sequence  . . . . . . . . . . . . . . ISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVV
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Template Sequence  LAYWTPETNNSACTATIAEVP. RGRVLKTVNLVQVSNVTLHWQN. QAEFLCFNVERHTKS
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SSS

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T.TSS
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   430.........440.........450 .........460.........470.. .......480.......
 
   342... ....350.........360.........370.........380.......
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Query Sequence  LWNL. . . . . . . . RSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTL
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Template Sequence  GKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEP. . HGNRFVTISVHEVADM
Template Known Secondary structure  SS
TTSTT


SS
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   488.490.........500.........510.........520... ......530.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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