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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank151Aligned Residues245
% Identity14%Templatec2pm7B_
PDB info PDB header:protein transportChain: B: PDB Molecule:protein transport protein sec13; PDBTitle: crystal structure of yeast sec13/31 edge element of the copii2 vesicular coat, selenomethionine version
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.... .....120.........130 .........140.........150.
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Query Sequence  LNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADV. . . SPQTVEDSDGELQRRTCLVCS.
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Template Sequence  IANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH
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   4.....10.........20.........30.........40.........50.........60...
 
   152.......160.........170......... 180.........190...
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Query Sequence  . EEQTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . . . . . AAVCSSSVVAVCDS
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Template Sequence  PKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDG
Template Known Secondary structure  GGG
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   64.....70.........80.........90.........100.........110.........120...
 
   194.....200.........210.........220.........230.........240.........250...
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Query Sequence  RAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTD
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Template Sequence  KVSVVEFKENGT. . . . . . . . . TSPIIIDAHAIGVNSASWAPATSRKFVTGGADNLVKIWK
Template Known Secondary structure  B
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   124.....130..... ....140.........150.........160.........170....
 
   254.....260.........270.........280.. .......290.........300..... ..
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Query Sequence  IRTKEGSTSKLSLPARRGCMARCADFNTL. . LPFALATASSDGIISVFDCRYPS. . . . TA
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Template Sequence  YNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKT
Template Known Secondary structure  TTTT


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   187..190.........200.........210.........220.........230.........240......
 
   308.310.........320.........330.........340.........350..
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Query Sequence  VRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYR
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Template Sequence  LLKEEKFPDVLWRASWSL. SGNVLALSGGDNKVTLWKENLEGKWE
Template Known Secondary structure  SSSS

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   247..250.........260.... .....270.........280.........290
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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