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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank142Aligned Residues244
% Identity14%Templatec2xznR_
PDB info PDB header:ribosomeChain: R: PDB Molecule:rack1; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
Resolution3.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110. ... .....120.........130.... .....
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Query Sequence  QWLNLPSTEPLSSVEW. . . . . . CEG. . SLLVGTSRGRIVVADVSPQT. . . . . . . . VEDSD
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Template Sequence  RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT
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   14.....20.........30.........40.........50.........60.........70...
 
   140.........150.........160.........170......... 180......
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Query Sequence  GELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . AAVCSSS
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Template Sequence  GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI
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   74.....80.........90.........100.........110.........120.........130...
 
   187..190.........200... .
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Query Sequence  VVAVCDSRAMVWDVKGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T
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Template Sequence  LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD
Template Known Secondary structure  TTS
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   134.....140.........150.........160.........170.........180.........190...
 
   205....210.........220.........230.........240.........250.........260....
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Query Sequence  QPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKL
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Template Sequence  GRLKVWNTNFQIRYTFKAHESNVNHLSISPNGK. YIATGGKDKKLLIWDILNLTY. . . . P
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   194.....200.........210.........220...... ...230.........240....... .
 
   265....270.........280.........290.........300..... ....310..
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Query Sequence  SLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPS. . . . . . . . . . . . TAVRTIP
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Template Sequence  QREFDAGSTINQIAFNP. . KLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK
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SGGGBTTB
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   249250.........260..... ....270.........280.........290.........300......
 
   313......320.........330.........340.......
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Query Sequence  SLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRS
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Template Sequence  GKNPQCTSLAWNA. LGKKLFAGFTDGVIRTFSFET
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   307..310......... 320.........330.........340
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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