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Job Descriptionexo99____
Confidence99.96%DateMon Feb 25 17:28:45 GMT 2019
Rank48Aligned Residues259
% Identity13%Templatec4j0xA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:ribosomal rna-processing protein 9; PDBTitle: structure of rrp9
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   88.90.........100.........110.... .....120.........130....
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Query Sequence  KLSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQT. . . . . . . . . . .
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Template Sequence  KLLISEAKQSFTRVGENNLTCISCFQPRLFAYTVSKDLQLTKYDITDFSKRPKKLKYAKG
Template Known Secondary structure  T

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   139140.........150.........160.........170.........180.........190........
 
   135....140.........150.........160.........170.........180.
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Query Sequence  . . . . . VEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAA. . . . . . . .
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Template Sequence  GAKYIPNTTEGHYDEILTVAASPDGKYVVTGGRDRKLIVWSTESLSPVKVIPTKDRRGEV
Template Known Secondary structure 
GGG




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S

TTSSTTSTTTT


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   217..220.........230.........240.........250.........260.........270......
 
   182.......190..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VCSSSVVAVCD
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Template Sequence  LSLAFRKNSDQLYASCADFKIRTYSINQFSQLEILYGHHDIVEDISALAMERCVTVGARD
Template Known Secondary structure 
TTSSTTSTTTT

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   284.....290.........300.........310.........320.........330.........340...
 
   193......200.........210... ......220.........230.........240........
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Query Sequence  SRAMVWDVKGATQPVHTWVPS. . . . VDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGS
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Template Sequence  RTAMLWKIPDETRLTFRGGDEPQKLLRRWMKEFFCEGSIDVVSMVDDF. . HFITGSDNGN
Template Known Secondary structure 
GGGT



TT






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   344.....350.........360.........370.........380.........390. ........400.
 
   249250.........260.... .....270.........280.........290.........300..
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Query Sequence  LVFTDIRTKEGSTSKL. . . SLPARRGCMARCADFNTLLPFALATASSDGIISVFDCR. . .
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Template Sequence  ICLWSLAKKKPIFTERIAHGILLLQPFWITSLYAIP. YSNVFISGSWSGSLKVWKISDNL
Template Known Secondary structure  TT
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STTTT
B



B




T.TBS
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   422.......430.........440.........450....... ..460.........470.........480
 
   303......310.........320.........330.... .....340.........350
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Query Sequence  YPSTAVRTIPSLHGDIMSLKYLKLHSDIIATG. GVDGSVVLWNLRSLPT
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Template Sequence  RSFELLGELSGAKGVVTKIQVVE. SKFRILASIAKEHRLGRWIANVSGA
Template Known Secondary structure  S
TT

S.

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   506...510.........520........ .530.........540.........550...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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