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Job Descriptionexo99____
Confidence96.86%DateMon Feb 25 17:28:45 GMT 2019
Rank323Aligned Residues259
% Identity8%Templatec2qc5A_
PDB info PDB header:lyaseChain: A: PDB Molecule:streptogramin b lactonase; PDBTitle: streptogramin b lyase structure
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110..... ....120.........130...... ...140.........150........
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Query Sequence  STEPLSSVEWCEGS. . LLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVCSEEQTPVG
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Template Sequence  PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWF
Template Known Secondary structure  TT


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   13......20.........30.........40.........50.........60.........70..
 
   159160.........170.. .......180.........190.........200.........210......
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Query Sequence  DIVVPPSKHAVSTL. . VRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDS
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Template Conservation                                                              
Template Sequence  TENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIY
Template Known Secondary structure  TTTT
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   73......80.........90.........100.........110.........120.........130..
 
   217..220.........230.........240.........250.........260.........270......
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Query Sequence  SKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARC
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Template Sequence  EYDLPNKGSYPAFITLGSDNA. LWFTENQNNSIGRITNTGKLE. . . . EYPLPTNAAAPVG
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SSTT


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TT

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   133......140.........150... ......160.........170.... .....180.......
 
   277..280.........290.........300.........310.........320.........330......
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Query Sequence  ADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGV
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Template Sequence  ITSGN. DGALWFVEIMGNKIGRITTT. GEISEYDIPTPNARPHAITAGK. NSEIWFTEWG
Template Known Secondary structure 
T.TSSTTTT
TT.


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S.TT
TT
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   188.190.. .......200.........210.. .......220.........230.... .....240....
 
   337..340.........350.........360.........
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Query Sequence  DGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTP
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Template Sequence  ANQIGRIT. NDNTIQEYQLQTENAEPHGITFGK
Template Known Secondary structure  TT
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   245....250.. .......260.........270......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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