Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence34.60%DateMon Feb 25 17:28:45 GMT 2019
Rank397Aligned Residues155
% Identity14%Templatec2b5nD_
PDB info PDB header:dna binding protein/protein bindingChain: D: PDB Molecule:damage-specific dna binding protein 1; PDBTitle: crystal structure of the ddb1 bpb domain
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   232.......240........ .250.........260.........270.........280...
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Query Sequence  WVPNSDSVVLTGSYSGS. . . . . . . . LVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLL
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Template Sequence  FVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA. . . LVSEWKEPQAKNISVASCNS. .
Template Known Secondary structure  S
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   451........460.........470.........480..... ....490.........500.....
 
   284.....290.........300.........310.........320....... ..330..... ..
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Query Sequence  PFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLH. . . . . SDIIATGG. VD
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Template Sequence  SQVVVAV. . GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTD
Template Known Secondary structure  S..TTTT
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   506...510.. .......520.........530.........540.........550.........560...
 
   338.340.........350.........360.........370.........380.........390...
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Query Sequence  GSVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTLTGLAQE
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Template Sequence  ISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE
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   564.....570.........580.........590.........600.........610.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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