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Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank103Aligned Residues245
% Identity12%Templatec4czvB_
PDB info PDB header:gene regulationChain: B: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2; PDBTitle: structure of the neurospora crassa pan2 wd40 domain
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   101........110.... .....120.........130...... ...140.........150.......
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Query Sequence  PSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVCSEEQTPV
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Template Sequence  YHAGPASTIAFDNQDELLWIGTQKGFAGSFIGRELKRFTAFRIHPETDGPLRQFLFVDKG
Template Known Secondary structure  GGG
S
S
SSTT
TT
TTTT
S
GGG




SS
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   22.......30.........40.........50.........60.........70.........80.
 
   158.160.........170. ........180.........190.........200...
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Query Sequence  GDIVVPPSKHAVST. . . . . . . . . . . . . . LVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGA
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Template Sequence  VIFLGSRSVYMAARSGVPIWSIRHESMQDLRAMSFTSKGTSEILVAGWQNKMLVIDVNKG
Template Known Secondary structure  TT
TTS


TT
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   82.......90.........100.........110.........120.........130.........140.
 
   204.....210.........220......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TQPVHTWVPSVDSSKNSPNEQEP
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Template Sequence  EVVKELPTQDQYSFLKMSRYICAATNKGTVNILDPITFTIKKQWQAHGAFINDLDTSNDF
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SS
SSSSSS
TTT


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   142.......150.........160.........170.........180.........190.........200.
 
   227..230.........240.........250.........260.........270.........280......
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Query Sequence  LLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFA
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Template Sequence  IVTCGGSHRQT. HNTPAILDPYVKVFDLKNMSA. . . . MNPVPFAPLAAHVRMHPR. MLTT
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.SSS


STTTT....



TT



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   202.......210.. .......220.........230... ......240.........250. ....
 
   287..290.........300.........310.........320.........330.........340......
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Query Sequence  LATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLR
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Template Sequence  AIVVNQAGQIHVTDLLNPSNSQVCYTQPQGVVLHFDVSR. TGEGKALADNKHNTYVWGSP
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TT
TT


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T.TS

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   256...260.........270.........280.........290.... .....300.........310....
 
   347..350..
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Query Sequence  SLPTYR
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Template Sequence  NKIQFT
Template Known Secondary structure  S


S
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   315....320
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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