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Job Descriptionexo99____
Confidence99.84%DateMon Feb 25 17:28:45 GMT 2019
Rank198Aligned Residues316
% Identity15%Templatec5bpwA_
PDB info PDB header:cell cycleChain: A: PDB Molecule:anaphase-promoting complex subunit 4; PDBTitle: atomic-resolution structures of the apc/c subunits apc4 and the apc52 n-terminal domain
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   223......230.........240.........250.........260.........270... ......
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Query Sequence  EQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCM. . . ARCADF
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Template Sequence  LPQEIIFLVWSPKRD. LIALANTAGEVLLHRLASFHR. . . . VWSFPPNENTGKEVTCLAW
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SS

SSSS.TTS
SGGG
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   1920.........30... ......40.........50.... .....60.........70...
 
   280.........290... ......300.........310.........320...
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Query Sequence  NTLLPFALATASSD. GIISVFDCRYPSTAVRTIPSLHGDIMSLKY. . . . . . . . . . . . . . .
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Template Sequence  RP. DGKLLAFALADTKKIVLCDV. EKPESLHSFS. VEAPVSCMHWMEVTVESSVLTSFYE
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T.TSSSSS
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   74. ....80.........90..... ....100..... ....110.........120.........130
 
   324.....330.........340......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LKLHSDIIATGGVDGSVVLWNLR
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Template Sequence  DESNLLLPKLPTLPKNYSNTSKIFSEENSDEIIKLLGDV. RLNILVLGGSSGFIELYAYG
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   133......140.........150.........160.........170. ........180.........190.
 
   347..350.........360.........370.........380.........390.........400......
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Query Sequence  SLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTLTGLAQEAMATLAVPVTERL
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Template Sequence  MFKIARVTGI. . AGTCLALCLSS. . DLKSLSVVTEVSTNGASEVSYFQ. . . LETNLLYSF
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T..TSS

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T
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   192.......200. ........210.. .......220.........230..... ....240....
 
   407..410.........420.........430.........440.........450.........460......
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Query Sequence  SKPSGRRQEDKTAANEATELMEREKYGVGLLYSRRLREAYEVIVDCATKRFARKEITMAM
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Template Sequence  LPEVTRMARKFTHISALLQYINLS. . . . . . . . LTCMCEAWEEILMQMDSRLKNTTTSVQ.
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   245....250.........260........ .270.........280.........290.....
 
   467..470.........480.........490......... 500.........510.........520..
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Query Sequence  RLAGLLDVKMLPKFDYRAKVESFEAEEKCKREL. . . . GVAALSQSQVIVAFEDALVRSSQ
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Template Sequence  . . . . . . . . . . . . . . DEQTLLMNQLTVKGLKKLGQSIESSYSSIQKLVISHLQSGSESLLY
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TTTTTS
T
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   302.......310.........320.........330.........340.......
 
   523......530.........540.........550.........560.........570.......
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Query Sequence  WLFPSLLSENIRDLQKPAKQDVTKLEALQLNLLLHNNIASGCIGSVVGGLQYFIA
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Template Sequence  HLSELKGMASWKQKYEPLGLDAAGIEEAITAVGSFILKANELLQVIDSSMKNFKA
Template Known Secondary structure  TSTTS


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   362.......370.........380.........390.........400.........410......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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