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Job Descriptionexo99____
Confidence99.97%DateMon Feb 25 17:28:45 GMT 2019
Rank35Aligned Residues279
% Identity13%Templatec4e54B_
PDB info PDB header:dna binding protein/dnaChain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: damaged dna induced uv-damaged dna-binding protein (uv-ddb)2 dimerization and its roles in chromatinized dna repair
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   90.........100.........110.... .....120.........130.... .....140...
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Query Sequence  SGMSKMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQT. . . VEDSDGELQ
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Template Sequence  LDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGG
Template Known Secondary structure  TTTTTS


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   98.100.........110.........120.........130.........140.........150.......
 
   144.....150.. .......160.........170......... 180.......
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Query Sequence  RRTCLVCSE. EQTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . . . AAVCSSSV
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Template Sequence  SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV
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   158.160.........170.........180.........190.........200.........210.......
 
   188.190.........200.........210.........220.........230.........240.......
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Query Sequence  VAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSG
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Template Sequence  TGDNVGNVILLNMDGKE. . . . . . . . . . . . LWNLRMHKKKVTHVALNPCCDWFLATASVDQ
Template Known Secondary structure 
SSSBSSS
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   218.220.........230.... .....240.........250.........260.....
 
   248.250.........260.........270.........280.........290.........300.......
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Query Sequence  SLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTA
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Template Sequence  TVKIWDLRQVRGKAS. FLYSLPHRHPVNAACFSP. DGARLLTTDQKSEIRVYSAS. QWDC
Template Known Secondary structure  B

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   266...270.........280 .........290........ .300.........310........ .320..
 
   308.310......... 320.........330.... .....340.........
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Query Sequence  VRTIPSLHGDIM. . . . . . SLKYLKLHSDIIATG. . . . . . . . . . . . GVDGSVVLWNLRSLP
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Template Sequence  PLGLIPHPHRHFQHLTPIKAAWHP. RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK
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   323......330.........340...... ...350.........360.........370.........380.
 
   350.........360..... ....370.........380.......
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Query Sequence  TYRVGRAQYKCPVFDL. ITTPWSVEQHVIGVTCGGELTL
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Template Sequence  MMCQLYDPESSGISSLNEFNP. . MGDTLASAM. GYHILI
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   382.......390.........400.. .......410. ......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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