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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank25Aligned Residues245
% Identity11%Templatec5a1uC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:coatomer subunit alpha; PDBTitle: the structure of the copi coat triad
Resolution13.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   95....100.........110.... .....120......... 130.........140.........150.
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Query Sequence  MQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVAD. VSPQTVEDSDGELQRRTCLVCS
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Template Sequence  MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
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S

SSSSTTSTTTT

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   1........10.........20.........30.........40.........50.........60
 
   152.......160.........170.........180.........190.........200.........210.
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Query Sequence  EEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWV
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Template Sequence  KQQPLF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . VSGGDDYKIKVWNYKLRRC. . . . . .
Template Known Secondary structure  TTTT.............................
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   61..... ...70.........80.....
 
   212.......220.........230.........240.........250.........260.........270.
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Query Sequence  PSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRG
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Template Sequence  . . . . . LFTLLGHLDYIRTTFFHHEYP. WILSASDDQTIRVWNWQSRTC. . . . VCVLTGHN
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   86...90.........100...... ...110.........120....... ..130.....
 
   272.......280.........290.........300... .
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Query Sequence  CMARCADFNTLLPFALATASSDGIISVFDCRY. . . . . . . . . . . . . . . . . . . . . . . . . . . P
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Template Sequence  HYVMCAQFHP. SEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTD
Template Known Secondary structure  S

S.SSSTTSSSSSSS



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   136...140..... ....150.........160.........170.........180.........190....
 
   305....310.........320.........330.........340.........350.........360....
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Query Sequence  STAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVFD
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Template Sequence  AVVKHVLEGHDRGVNWAAFHP. TMPLIVSGADDRQVKIWRMNESKAWEVDTC. RGHYNNV
Template Known Secondary structure  S

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   195....200.........210..... ....220.........230.........240..... ....250..
 
   365....370.........380.......
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Query Sequence  LITTPWSVEQHVIGVTCGGELTL
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Template Conservation                         
Template Sequence  SCAVFHPRQELILSNSEDKSIRV
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SSSSSSS
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   253......260.........270.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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