Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence71.45%DateMon Feb 25 17:28:45 GMT 2019
Rank383Aligned Residues182
% Identity9%Templatec4uuyA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:vacuolar membrane protein pep3; PDBTitle: structural identification of the vps18 beta-propeller reveals2 a critical role in the hops complex stability and function.
Resolution2.14 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   183......190.........200.........210.........220.........230.........240..
Predicted Secondary structure 

































Query SS confidence 



























































Query Sequence  CSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLT
Query Conservation 









 










 

  
  
   
 

 


  
 













Alig confidence 







.




















.......






















Template Conservation 

 
    .   
 



  
       

.......       
  






 




Template Sequence  NDQLIVTT. QRTIYRINLQDPAIVNHFDCP. . . . . . . LSKELETIMNVHVSPMGSVILIR
Template Known Secondary structure  TT
.SSTTSTT


.......

SSS


TTSS
Template Predicted Secondary structure 

.








.......










Template SS confidence 



























































   28.30..... ....40.........50...... ...60.........70.........
 
   243......250.........260.........270.........280.........290.... .....300.
Predicted Secondary structure 
































.
Query SS confidence 



















































.






Query Sequence  GSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDG. IISVFDC
Query Conservation 

 












  



 

 

   
 





 

 





 

.






Alig confidence 








.....














..







.




.





.






Template Conservation 
    
   .....   
 
 
 


   ..
 



 
.
  

.


  
  
 
  
Template Sequence  TNFGRYMLL. . . . . KDGEFTQLNKIKNLD. . LSSLHWIN. ETTFL. MGIKKTPKLYRVEL
Template Known Secondary structure  TTS
.....TT
GGGTT

..SS.SS.TTS
Template Predicted Secondary structure 


.....







..

.


.



Template SS confidence 



























































   80........ .90.........100... ......110. ..... ...120.........130
 
   302.......310.... .....320.........330.........340.........350........
Predicted Secondary structure 






...



























Query SS confidence 












. . .











































Query Sequence  RYPSTAVRTIPSL. . . HGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQY
Query Conservation 
 
 
 



 

...

 
 





 




















 


 
 

  
Alig confidence 












...










.







...




















Template Conservation         
          

 

    .    
 
 ...                     
Template Sequence  TGKDITTKLWYENKKLSGGIDGIAYWE. GSLLLTIK. . . DNILYWRDVTNMKFPLVLPDE
Template Known Secondary structure 
SS

TTS
S
T.TT...TS

TTS
SSB
S
S
Template Predicted Secondary structure 












.


...















Template SS confidence 



























































   131........140.........150....... ..160..... ....170.........180......
 
   359360.........370... ......380.....
Predicted Secondary structure 









...



Query SS confidence 














. . .











Query Sequence  KCPVFDLITTPWSVE. . . QHVIGVTCGGEL
Query Conservation     
  
        ...
        
  
Alig confidence 














...











Template Conservation                       




  

Template Sequence  SEQFERLKHHAIKKFDSYNGLFAWVTSNGI
Template Known Secondary structure 

B

S

S
STTBSS
Template Predicted Secondary structure 
















Template SS confidence 





























   187..190.........200.........210......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D