Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank105Aligned Residues246
% Identity13%Templatec3jcrD_
PDB info PDB header:splicingChain: D: PDB Molecule:u5-40k; PDBTitle: 3d structure determination of the human*u4/u6.u5* tri-snrnp complex
Resolution7.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   97..100.........110.... .....120.........130.. .......140.........150..
Predicted Secondary structure 







..





..














Query SS confidence 

















. .

















. .



















Query Sequence  WLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSP. . QTVEDSDGELQRRTCLVCSE
Query Conservation 







 








.. 




 










.. 

  
 
 
    


 
 
Alig confidence 

















..

















..



















Template Conservation    
 

   
  
  

 
  
 


 

 
 


             
   
  
    
Template Sequence  MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
Template Known Secondary structure 

SS




SSSS

BTTT

SS
TTS


SS
B

T
Template Predicted Secondary structure 

























Template SS confidence 



























































   60.........70.........80.........90.........100.........110.........
 
   153......160.........170. ........180.........190........
Predicted Secondary structure 
















..............

















Query SS confidence 


















. . . . . . . . . . . . . .


























Query Sequence  EQTPVGDIVVPPSKHAVST. . . . . . . . . . . . . . LVRCVRSNAAVCSSSVVAVCDSRAMVW
Query Conservation 

  
 


  

 
  

..............

 

  
   









 




Alig confidence 


















..............


























Template Conservation                                                              
Template Sequence  DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
Template Known Secondary structure  TSSTTTTTTT


SS

SS
TT
TTS
Template Predicted Secondary structure 



























































Template SS confidence 



























































   120.........130.........140.........150.........160.........170.........
 
   199200......... 210.........220........
Predicted Secondary structure 








..............................












Query SS confidence 










. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


















Query Sequence  DVKGATQPVHT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WVPSVDSSKNSPNEQEPLL
Query Conservation 





 

  ..............................
  
   
 

 


  
 
Alig confidence 










..............................


















Template Conservation                                                              
Template Sequence  DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
Template Known Secondary structure 
TTT



S

SSSSTTS
TTT



SS



Template Predicted Secondary structure 



























































Template SS confidence 



























































   180.........190.........200.........210.........220.........230.........
 
   229230.........240.........250.........260...... ...270.........280....
Predicted Secondary structure 





















....











Query SS confidence 





































. . . .

















Query Sequence  FAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . . PARRGCMARCADFNTLLP
Query Conservation 















 












  



 
....
 

   
 





 

Alig confidence 








.



























....














.

Template Conservation           .                                               .  
Template Sequence  GLSLSSEGS. YLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSP. DG
Template Known Secondary structure 
TTSS.
TTT

SSS



SS
TTSS






T.TT
Template Predicted Secondary structure 








.









































.

Template SS confidence 



























































   240........ .250.........260.........270.........280.........290..... ..
 
   285....290.........300.........310.........320.........330.........340....
Predicted Secondary structure 

























Query SS confidence 



























































Query Sequence  FALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWN
Query Conservation   





 









 
 
 



 



 
 





 

















Alig confidence 

















.





















.

















Template Conservation    
 


 

 
 


  .       
  
   
  
  
 .    
 
 
 

 
 


Template Sequence  SKIAAGSADRFVYVWDTT. SRRILYKLPGHAGSINEVAFHP. DEPIIISASSDKRLYMGE
Template Known Secondary structure  T
TTS
TT.T




SS





S.SSSTTT
Template Predicted Secondary structure 





.








.






Template SS confidence 



























































   298.300.........310..... ....320.........330....... ..340.........350.....
 
   345.
Predicted Secondary structure 

Query SS confidence 

Query Sequence  LR
Query Conservation 

Alig confidence 

Template Conservation 

Template Sequence  IQ
Template Known Secondary structure 

Template Predicted Secondary structure 
Template SS confidence 

   356.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D