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Job Descriptionexo99____
Confidence99.90%DateMon Feb 25 17:28:45 GMT 2019
Rank178Aligned Residues244
% Identity14%Templatec1p22A_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:f-box/wd-repeat protein 1a; PDBTitle: structure of a beta-trcp1-skp1-beta-catenin complex:2 destruction motif binding and lysine specificity on the3 scfbeta-trcp1 ubiquitin ligase
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   92.......100.........110.........120.........130...... ...140.........150
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Query Sequence  MSKMQWLNLPSTEPLSSVEWCEGSLLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVC
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Template Sequence  SLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY
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   256...260.........270.........280.........290.........300.........310.....
 
   151........160.........170....... ..180.........190.........200.........
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Query Sequence  SEEQTPVGDIVVPPSKHAVSTLVRCVR. SNAAVCSSSVVAVCDSRAMVWDVKGATQPVHT
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Template Sequence  . . DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD
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   316...320.........330.........340.........350.........360.........370...
 
   210.........220.........230.........240.........250.........260......
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Query Sequence  WVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . .
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Template Sequence  MASPTDITLRRVLVGHRAAVNVVDFDDK. YIVSASGDRTIKVWNTSTCEFVRTLNGHKRG
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   374.....380.........390.........400. ........410.........420.........430..
 
   267..270.........280.........290...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFALATASSD
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Template Sequence  IACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF. . . DNKRIVSGAYD
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   433......440.........450.........460.........470........ .480.........
 
   294.....300.. .......310.........320.........330.........340....
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Query Sequence  GIISVFDCR. . . . . . . . YPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWN
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Template Sequence  GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF. . . DEFQIVSSSHDDTILIWD
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   490.........500.........510.........520....... ..530.........540.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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