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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank145Aligned Residues237
% Identity11%Templatec4bh6H_
PDB info PDB header:cell cycleChain: H: PDB Molecule:apc/c activator protein cdh1; PDBTitle: insights into degron recognition by apc coactivators from2 the structure of an acm1-cdh1 complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110.........120.........130.........140.........150.........160....
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Query Sequence  PLSSVEWCEGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPP
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Template Sequence  YYSLIDWSSTDVLAVALGKSIFLTDNNTGDVVHLCDTENEYTSLSWIGAGSHLAVGQANG
Template Known Secondary structure  T



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   265....270.........280.........290.........300.........310.........320....
 
   165....170....... ..180.........190.........200.........210.........220...
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Query Sequence  SKHAVSTLVRCVR. SNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNE
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Template Sequence  LVEIYDVMKRKCIRTLSGHIDRVACLSWNNHVLTSGSRDHRILHRDVRMPDPFFETIESH
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   325....330.........340.........350.........360.........370.........380....
 
   224.....230.........240.........250.........260......
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Query Sequence  QEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . . . . . . . . . . . . . . .
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Template Sequence  TQEVCGLKWNVADN. KLASGGNDNVVHVYEGTSKSPILTFDEHKAAVKAMAWSPHKRGVL
Template Known Secondary structure  SS

SSSS.TTS
TT
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   385....390........ .400.........410.........420.........430.........440...
 
   267..270.........280.........290.........300.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFALATASSDGIISVFDC
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Template Sequence  ATGGGTADRRLKIWNVNTSIKMSDIDSGSQICNMVWSKNT. NELVTSHGYSKYNLTLWDC
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TTT
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   444.....450.........460.........470.........480... ......490.........500..
 
   302.......310.........320.........330.........340.....
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Query Sequence  RYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL
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Template Sequence  N. SMDPIAILKGHSFRVLHLTLSN. DGTTVVSGAGDETLRYWKL
Template Known Secondary structure  S.S




SS

T.TSSTTT
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   503 ......510.........520..... ....530.........540....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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