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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank17Aligned Residues278
% Identity17%Templatec5i2tA_
PDB info PDB header:biosynthetic proteinChain: A: PDB Molecule:periodic tryptophan protein 2; PDBTitle: domain characterization of the wd protein pwp2 and their relevance in2 ribosome biogenesis
Resolution2.54 Å
Model Dimensions (Å)X:37.514 Y:93.337 Z:43.110

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90........ .100.........110.... ...
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Query Sequence  VLAIGLNPLSTSGACVGLLTMESAEAKLSGMSKMQWL. . NLPSTEPLSSVEWCEG. . SLL
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Template Sequence  GTVYRQGNITFSDDGKQLLSPVGNRVSVFDLINNKSFTFEYEHRKNIAAIDLNKQGTLLI
Template Known Secondary structure  T
S

SS


TTSS
SSSTTTT
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   12.......20.........30.........40.........50.........60.........70.
 
   118.120.........130.........140.........150.........160.........170.......
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Query Sequence  VGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVR
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Template Sequence  SIDEDGRAILVNFKARNVLHHFNFKEKCSAVKFSPDGRLFALAS. GRFLQIWKTPDVNKD
Template Known Secondary structure  TTSTTT


SS

TTSS.TT


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   72.......80.........90.........100.........110..... ....120.........130
 
   178.180.. .......190.........200...
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Query Sequence  SNAAV. . . . . . . . . . . . . . . . . . . . . . CSSSVVAVCDSRAMVWDVKGA. . . . . . . . . . . .
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Template Sequence  RQFAPFVRHRVHAGHFQDITSLTWSQDSRFILTTSKDLSAKIWSVDSEEKNLAATTFNGH
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SS



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TTSSTTS

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   131........140.........150.........160.........170.........180.........190
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  RDYVMGAFFSHDQEKIYTVSKDGAVFVWEFTSWRITKKHFFYANQAKVKCVTFHPATRLL
Template Known Secondary structure  SS

TTSSTTS




SS

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   191........200.........210.........220.........230.........240.........250
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AVGFTSGEFRLYDLPDFTLIQQLSMGQNPVNTVSVNQTGEWLAFGSSKLGQLLVYEWQSE
Template Known Secondary structure  SSSTTTTS
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TTS
TTTTTTTT
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   276...280.........290.........300.........310.........320.........330.....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLATFEEHTSSVTAVQF
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TTSSTTS
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   336...340.........350.........360.........370.........380.........390.....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AKRGQVMFSSSLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSGEVVCAGSLDNFDI
Template Known Secondary structure  TTTTTTS
TTTTB




SS





TT
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   396...400.........410.........420.........430.........440.........450.....
 
   204.....210.........220....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TQPVHTWVPSVDSSKNSPNEQ
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Template Conservation                                                              
Template Sequence  HVWSVQTGQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWSIFGRSQQVEPIEVY
Template Known Secondary structure  TTT

B


B
TTSS

SSTT
TTS
SSS

S

S

S
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   456...460.........470.........480.........490.........500.........510.....
 
   225....230.........240.........250.........260.........270.........280....
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Query Sequence  EPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLP
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Template Sequence  SDVLALSMRPDGK. EVAVSTLKGQISIFNIEDAKQVGNIDCRKDIISKFFTTIHYSF. DG
Template Known Secondary structure  S

SSSS.SSSTTTT









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   516...520........ .530.........540.........550.........560.........570. ..
 
   285....290.........300.........310.. .......320.........330.........340..
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Query Sequence  FALATASSDGIISVFDCRYPSTAVRTIP. . SLHGDIMSLKYLKLHSDIIATGGVDGSVVL
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Template Sequence  MAIVAGGNNNSICLYDVP. NEVLLKRFIVSRNEVRVTSVQFSP. TANAFAAASTEGLL. I
Template Known Secondary structure  S
SSSTT.TT







T.TSSTT.
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   590.........600....... ..610.........620.........630. ........640..... .
 
   343..
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Query Sequence  WNL
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Template Sequence  YST
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   704..
 
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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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