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Job DescriptionNg99_____
Confidence100.00%DateTue Mar 12 12:31:53 GMT 2019
Rank37Aligned Residues368
% Identity13%Templatec1pi6A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40.........50.........60.........70. ....... .80.........
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Query Sequence  SGLHDGGQNVTKSLLRSDITIEDSSCICVNNQQNYIV. . . . QAGVGGR. FQTIKVIQKSR
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Template Conservation   
 

    
  



  

  
   
 
                 

    
  
 


Template Sequence  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP
Template Known Secondary structure 

BTTB



TTTTTT


S

SS
S
TTTTS

S
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   15....20.........30.........40.........50.........60.........70....
 
   90.........100.........110. ........120.........130.........140.
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Query Sequence  . SDAKQFTNTTTVLDKKDSPIPN. . . . . . TNIFSPQFSGKFPGPIHCMDMLNQYLLIGS.
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Template Sequence  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV
Template Known Secondary structure  STT

TTSTTTT

SS

TTS
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   75....80.........90.........100.........110.........120.........130....
 
   142.......150.........160.........170.........180 .........190....
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Query Sequence  . SNGECYVKTMDVASEKNNCLLDDSPNSIVKCQTFSHSKL. KKSDQSSILTTPSP. . . . .
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Template Conservation      
  
  
                 
                               
Template Sequence  GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK
Template Known Secondary structure 

SS
SSSS

B
B


S
SS

SSSS
BTTTTTB
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   135....140.........150.........160.........170.........180.........190....
 
   195....200.........210.........220.........230.........240. ....
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Query Sequence  . . . . . . EQYTFSTKINNVQIERSENPKNFHTLENNRLHIWSFEKDDAPIQTIQ. . . GSRS
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Template Conservation                
                                             
Template Sequence  FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG
Template Known Secondary structure 
SSS
TT
B
STT

TT

TTT




TT



S
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   195....200.........210.........220.........230.........240.........250....
 
   246...250.........260.........270.........280......
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Query Sequence  PLWCSSWSSFNSNLILIGGVSKAVKLIDTRSMGIANANIQF. . . . . . . . . . . . . . . . . . .
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Template Sequence  GIFALSWL. . DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI
Template Known Secondary structure 
S..SSSTTTTTTT

TTSGGG
TT
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   255....260.. .......270.........280.........290.........300.........310..
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  ISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHS
Template Known Secondary structure  TTS
TT


SS
TTTTTTS
TTTT



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   313......320.........330.........340.........350.........360.........370..
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  NLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLIL
Template Known Secondary structure  S


STT

TTSTT
SS

SSSTTS
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   373......380.........390.........400.........410.........420.........430..
 
   287..290...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SHCDAIT
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Template Conservation                                                            
 
Template Sequence  QSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS
Template Known Secondary structure  TTT


SS

SSTGGGTT
SS

SSS
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   433......440.........450.........460.........470.........480.........490..
 
   294.....300.........310.........320.........330.........340... ......350
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Query Sequence  DVQWSPLLPYWFASCSTDGLIYVWDQRYAAEPIKILEGHNNVVKKISWSR. . . SHVEVLA
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Template Conservation   
  
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Template Sequence  YISISP. SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEEIEEDLVA
Template Known Secondary structure 
T.TSSTTS
TTTT

S


SS









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   493..... .500.........510.........520.........530.........540.........550.
 
   351........360.........370.........380.........390.........400.........410
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Query Sequence  SGGVDHSVKLWSLRTEPHHVLTTLDKGFFSDSILGLSFSNVTPNQLFANSASGELLAISV
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Template Conservation 
 
 
  
 


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Template Sequence  TGSLDTNIFIYSVKRPMK. . . IIKALNAHKDGVNNLLWET. . PSTLVSSGADACIKRWNV
Template Known Secondary structure  TTS
SS
TT
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SSSSTT
..TTTTS
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   558.560.........570..... ....580.........590.... .....600.........610..
 
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No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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