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Job Descriptionexo99____
Confidence96.23%DateMon Feb 25 17:28:45 GMT 2019
Rank338Aligned Residues220
% Identity10%Templatec1n7dA_
PDB info PDB header:lipid transportChain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor
Resolution3.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   172.......180.........190.........200.........210.........220.........230.
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Query Sequence  LVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQ
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Template Sequence  NVVALDTEVASNRIYWSDLSQRMICSTQLDRAH. . . . . . . . . . GSSYDTVISRDIPDGLA
Template Known Secondary structure  T



TTTT

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   407..410.........420.........430......... 440.........450......
 
   232.......240.........250.........260.........270.........280.........290.
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Query Sequence  WVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATAS
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Template Sequence  VDWIHSNIYWTDSVLGTVSVADTKGVKR. . . . KTLFREQGSKPRAIVVDPVHGFMYWTDW
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SSSB


TTTS
BSSS

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SS






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   460.........470.........480....... ..490.........500.........510.....
 
   292.......300.........310..... ....320.........330.........340.........350
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Query Sequence  SDGIISVFDCRYPSTAVRTIPSLH. GDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPT
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Template Sequence  GTP. AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR
Template Known Secondary structure  SSS.

B

SSS



S
SS
SS



TTT

TTTT
SSSS

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   516.. .520.........530.........540.........550.........560.........570....
 
   351........360. ..... ...370.........380... ......390.........400.
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Query Sequence  YRVGRAQYKCP. VFDLI. . . . . . . TTPWSVEQHVIGVTCGG. ELTLTGLAQEAMATLAVP
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Template Sequence  KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF
Template Known Secondary structure 


SSS
SS



TT
STTT
TTT


TT
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B
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   575....580.........590.........600.........610.........620.........630....
 
   402....
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Query Sequence  VTERL
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Template Conservation      
Template Sequence  HQLTQ
Template Known Secondary structure  SSSSS
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   635....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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