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Job Descriptionexo99____
Confidence98.69%DateMon Feb 25 17:28:45 GMT 2019
Rank282Aligned Residues258
% Identity15%Templatec3p1lA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:lipoprotein yfgl; PDBTitle: crystal structure of escherichia coli bamb, a lipoprotein component of2 the beta-barrel assembly machinery complex, native crystals.
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130...... ...140.........150.........160...
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Query Sequence  EGSLLVGTSRGRIVVADVSPQTVE. . . . . . . . . DSDGELQRRTCLVCSEEQTPVGDIVVP
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Template Sequence  DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK
Template Known Secondary structure  TT
TTSTTT




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TTTT
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   6970.........80.........90.........100.........110.........120........
 
   164.....170.........180.
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Query Sequence  PSKHAVSTLVRCVRSNAA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLD
Template Known Secondary structure  STTT


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   129130.........140.........150.........160.........170.........180........
 
   182.......190.........200.........210.........220.......
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Query Sequence  . . . . . . . . . . . . . . VCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPL
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Template Sequence  MPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVD
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SS

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TT

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TT



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   189190.........200.........210.........220.........230.........240........
 
   228.230.........240.........250.........260.........270.........280.......
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Query Sequence  LFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFAL
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Template Sequence  TTPVVVNGV. . . VFALAYNGNLTALDLRSGQIMWKRE. . . . . . . . LGSVNDFIV. DGNRI
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TTT

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   249250....... ..260.........270.........280.. .......290. .....
 
   288.290.........300.........310.........320.........330.........340.......
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Query Sequence  ATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRS
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Template Sequence  YLVDQNDRVMALTID. GGVTLWTQSDLLHRLLTSPVLY. . NGNLVVGDSEGYLHWINVED
Template Known Secondary structure  TT

TT.T


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..TT
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   297..300.........310. ........320.........330... ......340.........350...
 
   348.350.........360.........370.........380.........
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Query Sequence  LPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTLTG
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Template Sequence  GRF. . . . VAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT
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S

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   354.. ...360.........370.........380.........390.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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