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Job Descriptionexo99____
Confidence28.09%DateMon Feb 25 17:28:45 GMT 2019
Rank405Aligned Residues182
% Identity10%Templatec5yylA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:major royal jelly protein 1; PDBTitle: structure of major royal jelly protein 1 oligomer
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   155....160.........170.........180.........190.........200.........210....
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Query Sequence  TPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSV
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Template Sequence  VSASKLAIDKCDRLWVLDSGLVNNTQPM. . . . . . . . CSPKLLTFDLTT. SQLLKQVEIPH
Template Known Secondary structure  S

TTS


BTTTB

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   122.......130.........140......... 150.........160. ........170..
 
   215....220.........230..... ....240.........250.........260.........270.
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Query Sequence  DSSKNSPNEQEPLLFAQWVPN. . . SDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRG
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Template Sequence  DVAVNATTGKGRLSSLAVQSLDCNDTMVYIADEKGEGLIVYHNSDDSFHRLTSNTFDYDP
Template Known Secondary structure  S
TTT



SS


TTTTTTT





GGGS

G
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   173......180.........190.........200.........210.........220.........230..
 
   272. ......280.........290.........300... ....
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Query Sequence  CM. . . . . . . . . . . . . . . ARCADFNTLLPFALATASSDGIISVFDCRY. . . . . . . . . PSTA
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Template Sequence  KFTKMTIDGESYTAQDGISGMALSP. MTNNLYYSPV. ASTSLYYVNTEQFRTSDYQDIHY
Template Known Secondary structure  GG
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T.TT
S.S
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   236...240.........250.........260 .........270 .........280.........290...
 
   308.310.........320.........330.........340........
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Query Sequence  VRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSL
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Template Sequence  EGVQNILDTQSSAKVVSK. SGVLFFGLVGDSALGCWNEHRT
Template Known Secondary structure  SS
SSS

T.TSTTTTTTS
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   296...300.........310... ......320.........330.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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