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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank23Aligned Residues346
% Identity17%Templatec3iytG_
PDB info PDB header:apoptosisChain: G: PDB Molecule:apoptotic protease-activating factor 1; PDBTitle: structure of an apoptosome-procaspase-9 card complex
Resolution9.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40..... ....50.........60 .........70.........
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Query Sequence  NHPSIIAHSDILPPATT. AKVFSTAQLAAHHRE. . . . . . . . NVLAIGLNPLSTSGACVGL
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Template Sequence  INKKAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFI
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SSSS
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   598.600.........610.........620.........630.........640.........650.......
 
   80... ......90.........100 .........110..... ....120.........130..
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Query Sequence  LTME. SAEAKLSGMSKMQWLNL. . PSTEPLSSVEWCEGS. . . . LLVGTSRGRIVVADVSP
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Template Sequence  ATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ
Template Known Secondary structure 

TT



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SS

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   673......680.........690.........700.........710.........720.........730..
 
   133... ...140.........150.........160.........170.........180.....
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Query Sequence  QTVE. DSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSS. . . . . .
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Template Sequence  KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLED
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SS

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   733......740.........750.........760.........770.........780.........790..
 
   186...190.........200...
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Query Sequence  . . . SVVAVCDSRAMVWDVKGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation              
                     
                         
Template Sequence  PQERIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN
Template Known Secondary structure 


SS

SSSTT






SS

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   793......800.........810.........820.........830.........840.........850..
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  TDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMVFQENEV
Template Known Secondary structure  TGGG


SS

SSSS
TT

B
B
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SS
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   869870.........880.........890.........900.........910.........920........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                    
                         
Template Sequence  MVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRI
Template Known Secondary structure  SS
TTT
SSS



SSS
SS
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   936...940.........950.........960.........970.........980.........990.....
 
   204.....210.........220.........230.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPN
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Template Conservation                                 
   
               
  
  
  
Template Sequence  FQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKN
Template Known Secondary structure 



SS

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S
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   996...1000.........1010.........1020.........1030.........1040.........1050.....
 
   236...240.........250.........260.........270.........280.........290.....
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Query Sequence  SDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGI
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Template Sequence  SR. . LLSWSFDGTVKVWNIITGNK. . . . EKDFVCHQGTVLSCDISH. DATKFSSTSADKT
Template Known Secondary structure  SS..S
GGGSS
S....S
S

SS
.TTTTTT
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   1056. ..1060.........1070....... ..1080.........1090..... ....1100........
 
   296...300.........310.........320.........330.........340.........350.....
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Query Sequence  ISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGR
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Template Sequence  AKIWSFD. LLLPLHELRGHNGCVRCSAFSV. DSTLLATGDDNGEIRIWNVSNGELLHLCA
Template Known Secondary structure  S

.SSSS

S


SS
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BTTTT
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   11091110..... ....1120.........1130....... ..1140.........1150.........1160......
 
   356.. .360.........370.........380.......
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Query Sequence  AQY. . . . . . . KCPVFDLITTPWSVEQHVIGVTCGGELTL
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Template Sequence  PLSEEGAATHGGWVTDLCFSP. . DGKMLISA. . GGYIKW
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B
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   1167..1170.........1180....... ..1190..... ....1200.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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