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Job Descriptionexo99____
Confidence95.51%DateMon Feb 25 17:28:45 GMT 2019
Rank348Aligned Residues192
% Identity8%Templatec4fhnD_
PDB info PDB header:structural protein/oxidoreductaseChain: D: PDB Molecule:nucleoporin nup120; PDBTitle: nup37-nup120 full-length complex from schizosaccharomyces pombe
Resolution6.99 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   151........160.........170.........180.........190.........200.........210
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Query Sequence  SEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTW
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Template Sequence  LPDARLDDDWCLCYRPISFLNQKPDLMAAISTSEICVSFFNGGLTKIILNPKDA. . . . . .
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   149150.........160.........170.........180.........190.........200..
 
   211........220.........230.........240.........250.........260...
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Query Sequence  VPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSK. . . . . . .
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Template Sequence  . . . . . . SHYEQHSPNTIISMIFLSTYN. VLVMLSLDYKLKVLDLSTNQCVETIELSQTIL
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   203......210.........220... ......230.........240.........250.....
 
   264.....270.........280....... ..290.........300.........310...
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Query Sequence  . . . . . . LSLPARRGCMARCADFNTLLPFAL. . . . ATASSDGIISVFDCRYPSTAVRTIPS
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Template Sequence  PLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKLNANAHSFK. LNVVIEKGIIPPSLPD
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   280.........290.........300.........310.........320.. .......330........
 
   314.....320.........330.........340..... ....350.........360
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Query Sequence  LHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL. RSLPTYRVGRAQYKC
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Template Sequence  DEFIPWMLS. . . . DFQLISSEGSQSKFLLIIAWKSNLNTVIQKCNLSL
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   339340....... ..350.........360.........370.........380..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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