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Job Descriptionexo99____
Confidence99.97%DateMon Feb 25 17:28:45 GMT 2019
Rank39Aligned Residues236
% Identity17%Templatec6mzcG_
PDB info PDB header:transcriptionChain: G: PDB Molecule:transcription initiation factor tfiid subunit 5; PDBTitle: human tfiid bc core
Resolution4.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.... .....120.........130.......
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Query Sequence  LNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVED. . . . . . . . . . . . . . . . . .
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Template Sequence  TFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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   465....470.........480.........490.........500.........510.........520....
 
   138.140.........150.........160.........170.........180...
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Query Sequence  . . . . . . . . . . . . . . SDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVC
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Template Sequence  XXXXXXXXXXXXKILYGHSGPVYGASFSPDRNYL. . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SGGG



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   525....530.........540.........550........
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  SSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTG
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Template Sequence  . . . LSSSEDGTVRLWSLQTF. . . . . . . . . . . TCLVGYKGHNYPVWDTQFSPYGY. YFVSG
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   559560.........570..... ....580.........590........ .600...
 
   244.....250.........260......
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Query Sequence  SYSGSLVFTDIRTKEGSTSKLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVR
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   604.....610.........620.........630.........640.........650.........660...
 
   267..270.........280.........290.........300.........310.........320.....
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Query Sequence  . PARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLK
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Template Sequence  IFTGHKGPIHSLTFSP. NGRFLATGATDGRVLLWDIG. HGLMVGELKGHTDTVCSLRFSR
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   664.....670......... 680.........690......... 700.........710.........720.
 
   326...330.........340.........350.........360 ..
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Query Sequence  LHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQYKC. . . . . . . . . . . . . . . . . . . . . . . PV
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Template Sequence  . DGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
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   722.......730.........740.........750.........760.........770.........780
 
   363......370.........380.........
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Query Sequence  FDLITTPWSVEQHVIGVTCGGELTLTG
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Template Sequence  VHLHFTR. . . . . . . . . . . . RNLVLAAG
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   781...... ..790.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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