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Job Descriptionexo99____
Confidence99.97%DateMon Feb 25 17:28:45 GMT 2019
Rank43Aligned Residues273
% Identity16%Templatec6f3tD_
PDB info PDB header:transcriptionChain: D: PDB Molecule:transcription initiation factor tfiid subunit 5; PDBTitle: crystal structure of the human taf5-taf6-taf9 complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.... .....120.........130..
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Query Sequence  QWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSP. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDD
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   463......470.........480.........490.........500.........510.........520..
 
   133......140.........150.........160.........170.. .......
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Query Sequence  . . . . . . . . . . . QTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTL. . VRCVRSN
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Template Sequence  VLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYK
Template Known Secondary structure  T
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   523......530.........540.........550.........560.........570.........580..
 
   180.........190.........200.........210.........220.........230.........
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Query Sequence  AAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSV
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Template Sequence  GHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSN. Y
Template Known Secondary structure  S

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   583......590.........600.........610.........620.........630.........640 .
 
   240.........250.........260.........270.........280.........290.........
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Query Sequence  VLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVF
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Template Sequence  VATGSADRTVRLWDVLNGNC. . . . VRIFTGHKGPIHSLTFSP. NGRFLATGATDGRVLLW
Template Known Secondary structure  TTSTTT

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   642.......650.........660. ........670......... 680.........690......
 
   300.........310.........320.........330.........340.......
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Query Sequence  DCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRS. . . . . . . . . . . .
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Template Sequence  DIG. HGLMVGELKGHTDTVCSLRFSR. DGEILASGSMDNTVRLWDAIKAFEDLETGHINL
Template Known Secondary structure  TT.TT


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   697.. 700.........710.........720. ........730.........740.........750....
 
   348.350......... 360.........370.........
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Query Sequence  . . . LPTYRVGRAQYK. CPVFDLITTPWSVEQHVIGV
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Template Sequence  PENSQELLLGTYMTKSTPVVHLHFTR. . . RNLVLAA
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S

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   762.......770.........780....... ..790....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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