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Job Descriptionexo99____
Confidence91.60%DateMon Feb 25 17:28:45 GMT 2019
Rank359Aligned Residues242
% Identity11%Templatec3ei1A_
PDB info PDB header:dna binding protein/dnaChain: A: PDB Molecule:dna damage-binding protein 1; PDBTitle: structure of hsddb1-drddb2 bound to a 14 bp 6-42 photoproduct containing dna-duplex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   112.......120.........130.........140.........150.........160.........170.
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Query Sequence  CEGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVST
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Template Sequence  DQQTFFCGNVAHQ. QLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSS. . . . . .
Template Known Secondary structure  SS
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   454.....460...... ...470.........480.........490.........500......
 
   172.......180.........190.........200.........210.........220.........230.
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Query Sequence  LVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQ
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Template Sequence  . . . . . . . . . . . . . . QVVVAVGRALYYLQIHPQE. . . . . . . . . . LRQISHTEMEHEVACLD
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   507..510.........520..... ....530.........540..
 
   232..... ..240..... ....250.........260.........270.........280........
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Query Sequence  WVPNSD. . SVVLTGSY. SGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALA
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Template Sequence  ITPLGGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE. . SSHYLL
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   543......550.........560.........570.........580.........590.... .....600
 
   289290.........300..... ....310.........320.........330.........340.....
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Query Sequence  TASSDGIISVFDCRYPS. . . TAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL
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Template Sequence  CALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRS. LSTTNVFACSDRPTVIYSS
Template Known Secondary structure  TTS
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   604.....610.........620.........630.........640... ......650.........660..
 
   346...350.........360.........370.........380.........390
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Query Sequence  RSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTLTGL
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Template Sequence  NHKLVFSNVNLKEVNYMCPLNSDG. . YPDSLALAN. NSTLTIGTI
Template Known Secondary structure  SSSBSSS




SS..STT
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   663......670.........680...... ...690..... ....700....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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