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Job Descriptionexo99____
Confidence96.83%DateMon Feb 25 17:28:45 GMT 2019
Rank325Aligned Residues183
% Identity11%Templatec5haxA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:nucleoporin nup170; PDBTitle: crystal structure of chaetomium thermophilum nup170 ntd-nup53 complex
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200.........210.........220.........230. ......
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Query Sequence  SVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQ. . . . . . . . WVPNSD
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Template Sequence  YAWASIDSSLFLWDYTHPN. . . . . . . . . . PELIGYEEATHTITAVALVPPKPGVFVKTIT
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   155....160.........170... ......180.........190.........200....
 
   238.240.........250......... 260.........270.........280.........
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Query Sequence  SVVLTGSYSGSLVFTDIRTKEG. . . . . . . . STSKLSLPARRGCMARCADFNTLLPFALAT
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Template Sequence  HVLVV. ATTSEIILLGVSATPTPSGSKSLTLYSTRMSVHRGGSDVSFIVGTK. DGRIFLG
Template Known Secondary structure  .SS

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   205.... 210.........220.........230.........240.........250..... ....260..
 
   290.........300....... ..310.........320.........330......
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Query Sequence  ASSDGIISVFDCRYPSTA. . . . . . . . . . . . . VRTIPSLHGDIMSLKYLKLHSDIIATGGV
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Template Sequence  GESDT. . DIHEIFYQQEERWFSSRCGKINHSHPFGSRQQEWLRGLYVDD. TRNLLYSLSN
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   263.... ..270.........280.........290.........300......... 310.........
 
   337..340.........350..... ....360...... ...370. ...
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Query Sequence  DGSVVLWNLRSLPTYRVGR. . . . . . . . . . . . . . . . . . . . AQYKCPVFDLI. TTPWS. VEQ
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Template Sequence  RSTIRTYHMEGPEKLTKVIEKDKTSCLRDFAHMADSSPLFTDKTNIVALSPIPATEASKL
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   333......340.........350.........360.........370.........380.........390..
 
   375....380...
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Query Sequence  HVIGVTCGG
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Template Sequence  HLMALTDTG
Template Known Secondary structure  TTS
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   393......400.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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