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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank31Aligned Residues264
% Identity15%Templatec6cb1s_
PDB info PDB header:ribosomeChain: S: PDB Molecule:60s ribosomal protein l20-a; PDBTitle: yeast nucleolar pre-60s ribosomal subunit (state 3)
Resolution4.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   93......100.........110.... .....120.........130.........140.........150
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Query Sequence  SKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVC
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Template Sequence  PRCSTIYAGHKGKVRTLSIDPSGLWLATGSDDGTVRVWEILT. . . . . . . . . . . . . . . . . .
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   426...430.........440.........450.........460.......
 
   151........160.........170.........180.........190.........200
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Query Sequence  SEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDV. . . . . . . . . .
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Template Sequence  . . . GREVYRTTLIDDEENPDYHIECIEWNPDANNGILAVAVGENIHLIVPPIFGYDIENN
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   469470.........480.........490.........500.........510.........520.....
 
   201......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KGATQPV
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Template Sequence  GKTKIEDGFQVAQWNKPSQKQLEKDICITISCKKTVKKLSWHRKGDYFVTVQPDSGNTSV
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   526...530.........540.........550.........560.........570.........580.....
 
   208.210.. .......220.........230.........240.........250.........260......
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Query Sequence  HTWVP. SVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL
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Template Sequence  LIHQVSKHLTQSPFKKSKGIIMDAKFHPFKP. . QLFVCSQRYVRIYDLSQQIL. . . . VKK
Template Known Secondary structure  GGGT


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   622.......630.........640.........650.. .......660.........670.. ...
 
   267..270.........280.........290.........300.........310.........320......
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Query Sequence  PARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKL
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Template Sequence  LLPGARWLSKIDIHP. RGDNLIASSFDKRVLWHDLDLASTPYKTLRYHEKAVRSVNFHK.
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   676...680.........690 .........700.........710.........720.........730...
 
   327..330.........340......... 350.........360.........370....
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Query Sequence  HSDIIATGGVDGSVVLWNLRSLP. . . . . . . . . . . . TYRVGRAQYKCPVFDLITTPWSVEQ
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Template Sequence  KLPLFSSAADDGTIHVFHATVYDDMMKNPMIVPLKKLTGHKVINSLGVLDAIWHP. . REA
Template Known Secondary structure  SSSTTS


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   734.....740.........750.........760.........770.........780........ .790.
 
   375....380.......
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Query Sequence  HVIGVTCGGELTL
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Template Sequence  WLFSAGADNTARL
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   792.......800....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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