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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank2Aligned Residues278
% Identity16%Templatec3dm0A_
PDB info PDB header:sugar binding protein,signaling proteinChain: A: PDB Molecule:maltose-binding periplasmic protein fused with rack1; PDBTitle: maltose binding protein fusion with rack1 from a. thaliana
Resolution2.40 Å
Model Dimensions (Å)X:57.303 Y:52.252 Z:36.538

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80..
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Query Sequence  LRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRENVLAIGLNPLSTSGACVGLLTM
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Template Sequence  LKGTMRAHTDMVTAIATPI. . . . . . . . . DNADIIVSASRDKSIILWKLTKDDKAYGV. . .
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   1007..1010.........1020..... ....1030.........1040.........1050....
 
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Query Sequence  ESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTV. EDSD
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Template Sequence  . . . . . . . . . . . . AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV
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   1055....1060.........1070.........1080.........1090.........1100..
 
   140.........150.........160.........170......... 180.
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Query Sequence  GELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . . . . . . AA
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Template Sequence  GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT
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   1103......1110.........1120.........1130.........1140.........1150.........1160..
 
   182.......190.........200.........210.........220.........230.........240.
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Query Sequence  VCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVL
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Template Sequence  LQPTIVSASWDKTVKVWNLSNC. . . . . . . . . . . KLRSTLAGHTGYVSTVAVSPDGS. LCA
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   1163......1170.........1180.... .....1190.........1200....... ..1210
 
   242.......250.........260.........270.........280.........290.........300.
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Query Sequence  TGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDC
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Template Sequence  SGGKDGVVLLWDLAEGKK. . . . LYSLEAN. SVIHALCFSP. NRYWLCAAT. EHGIKIWDL
Template Known Secondary structure  TTSB
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   1211........1220........ .1230..... ....1240..... ....1250.... .....1260...
 
   302.......310...... ...320.........330.........340.....
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Query Sequence  RYPSTAVRTIPSLHG. . . DIMSLKYLKLHSDIIATGGVDGSVVLWNL
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Template Sequence  E. SKSIVEDLKVDLKKVIYCTSLNWSA. DGSTLFSGYTDGVIRVWGI
Template Known Secondary structure  T.TT









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   1264 .....1270.........1280......... 1290.........1300........
 
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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