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Job Descriptionexo99____
Confidence90.23%DateMon Feb 25 17:28:45 GMT 2019
Rank364Aligned Residues243
% Identity9%Templatec3h7nD_
PDB info PDB header:structural proteinChain: D: PDB Molecule:nucleoporin nup120; PDBTitle: structure of nup120
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   112.......120.........130.........140.........150.........160.........170.
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Query Sequence  CEGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVST
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Template Sequence  NQRYTLTIQEVEQQLLVNVILKDGSFLTLQLPL. . SFLFSSANTLNGEWFHLQNPYDFTV
Template Known Secondary structure  SGGGG

SS
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S..S

S


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   103......110.........120.........130..... ....140.........150.........160
 
   172.......180.........190.........200......... 210.........220......
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Query Sequence  LVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHT. . . . . WVPSVDSSKNSPNEQEP
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Template Sequence  RVPHFLFYVSPQFSVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKSLTRFFSRSSKSDY
Template Known Secondary structure  S
B





SSS


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   161........170.........180.........190.........200.........210.........220
 
   227..230.........240.........250.........260.........270.........280......
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Query Sequence  LLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFA
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Template Sequence  DSVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEA. VGEY
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BTTTB
BTT

B
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S.



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   221........230.........240.........250.........260.........270..... ....
 
   287..290 .........300..... ....310.........320.........
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Query Sequence  LATA. . . . . . . . . SSDGIISVFDCRYPS. . . . . . . . TAVRTIPSLHGDIMSLKYLKLHSD
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Template Sequence  LSLYNNTLVTLLPLENGLFQMGTLLVDSSGILTYTFQNNIPTNLSASAIWSIV. . . . DLV
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SS
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B


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B







GGG

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   280.........290.........300.........310.........320.........330.. ...
 
   330..... ....340..... ....350.........360.
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Query Sequence  IIATGG. . . VDGSVVLWNL. RSLPTYRVGRAQYKCP
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Template Sequence  LTRPLELNVEASYLNLIVLWKSGTASKLQILNVNDE
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S
S

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   336...340.........350.........360.........370.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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