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Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank91Aligned Residues243
% Identity17%Templatec5cykB_
PDB info PDB header:protein bindingChain: B: PDB Molecule:ribosome biogenesis protein erb1; PDBTitle: structure of ytm1 bound to the c-terminal domain of erb1-r486e
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   85....90.........100.........110.... .....120.........130......... 140
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Query Sequence  AEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVEDSD. . G
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Template Sequence  PDELKPFPTVQQTIFRGHEGRVRSVAIDPTGVALATGGDDGTVRVWELLTGEQVWSVKLN
Template Known Secondary structure 
GGG




S


SS

TTSSTTSTTT


S
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   435....440.........450.........460.........470.........480.........490....
 
   141........150.........160.........170.........180.
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Query Sequence  ELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAA. . . . . . . . . . . . . . . . . . .
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Template Sequence  GDEAVNTVRWRPTKDTFILAAAAGEDIFLMIPTHPSVTPALDQASRDILNAGFPPGKWAR
Template Known Secondary structure  SS


S
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   495....500.........510.........520.........530.........540.........550....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PGTRLEDEGVLLRITVRSTIKAISWHRRGDHFATVSPSGQRSSVAIHTLSKHLTQIPFRK
Template Known Secondary structure 

TTSS



TTSS
SS
STTSTTTT

S

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   572.......580.........590.........600.........610.........620.........630.
 
   182.......190.........200.........210.........220.........230
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Query Sequence  . . . . . . . . . . . VCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFA
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Template Sequence  LNGLAQTASFHPLRPLFFVATQRSIRCYDLQKL. . . . . . . . . . . ELVKIVQPGAKWISSF
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SS

SSSSSS
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   632.......640.........650.........660.... .....670.........680
 
   231........240.........250.........260.........270.........280.........290
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Query Sequence  QWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATA
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Template Sequence  DVHPGGD. NLVVGSYDKRLLWHDLDLSN. . . RPYKTMRFHTEAIRAVRFHKGGLPLFADA
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TTSS.SSSTTT
S...S
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   681...... ..690.........700....... ..710.........720.........730......
 
   291........300..... ....310....... ..320.........330........
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Query Sequence  SSDGIISVFDCRYPS. . . . . . . . TAVRTIPSLHGD. . . . IMSLKYLKLHSDIIATGGVDG
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Template Sequence  SDDGSLQIFHGKVPNDQLENPTIVPVKMLKGHKVVNKLGVLDIDWHP. REPWCVSAGADG
Template Known Secondary structure  SSS


SSTT







BTTB

S.SSS
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   737..740.........750.........760.........770.........780... ......790.....
 
   339340...
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Query Sequence  SVVLW
Query Conservation 




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Template Sequence  TARLW
Template Known Secondary structure 
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   796...800
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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