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Job Descriptionexo99____
Confidence99.89%DateMon Feb 25 17:28:45 GMT 2019
Rank186Aligned Residues260
% Identity10%Templatec5gmkn_
PDB info PDB header:rna binding protein/rnaChain: N: PDB Molecule:5'-splicing site; PDBTitle: cryo-em structure of the catalytic step i spliceosome (c complex) at2 3.4 angstrom resolution
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   71........80... ......90.........100.........110.... .....120......
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Query Sequence  STSGACVGLLTME. SAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIV
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Template Sequence  TKSELKRRRKTRKGDGPWGSWSPKKVIRNYPGHPEGTTALKFLPKTGHLILSGGNDHTIK
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   52.......60.........70.........80.........90.........100.........110.
 
   127..130.........140.........150.........160.........170.........180......
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Query Sequence  VADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSS
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Template Sequence  IWDFECLRDFQGHNKPIKALRFTEDCQSFLSSSFDRSVKIWDTETGKVKTRLHLNSTPAD
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   189190.........200.........210.........220.........230.........240........
 
   187..190.........200.........210.........220.........230.........240......
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Query Sequence  VVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYS
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Template Sequence  VESRPTNPHEFIVGLSNSKILHY. . . . . DDVQTYDHHLSSILALKYFPDGS. KFISSSED
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   253......260.........270..... ....280.........290........ .300......
 
   247..250.........260...... ...270..
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Query Sequence  GSLVFTDIRTKEGSTSKLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGC
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Template Sequence  KTVRIWENQINVPIKQISDTASMPFLNVHPNYFCAQSMDNRIYSFSKYKRHPKKIHSSAG
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   315....320.........330.........340.........350.........360.........370....
 
   273......280.........290.........300.........310.........320.........330..
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Query Sequence  MARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIA
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Template Sequence  YGISLAFSG. DGRYICSGDSKSRLFTWDWN. TSRLLI. . . PGNKPITQVDWHP. SK. . VI
Template Known Secondary structure  TTS
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   385....390... ......400.........410... ...... 420.........430.. .. ..
 
   333......340....
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Query Sequence  TGGVDGSVVLWN
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Template Sequence  CSGAAGKIYVCD
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   444.....450.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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