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Job Descriptionexo99____
Confidence99.90%DateMon Feb 25 17:28:45 GMT 2019
Rank181Aligned Residues260
% Identity12%Templatec5lj3J_
PDB info PDB header:splicingChain: J: PDB Molecule:prp46; PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   86...90.........100.........110... . .....120.........130...... ...140.
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Query Sequence  EAKLSGMSKMQWLNLPSTEPLSSVEWCE. G. . SLLVGTSRGRIVVADVSPQTVE. DSDGE
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Template Sequence  RPEWHAPWKLSRVINGHLGWVRCVAIDPVDNEWFITGSNDTTMKVWDLATGKLKTTLAGH
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   122.......130.........140.........150.........160.........170.........180.
 
   142.......150.........160.........170.... .....180.........190.........
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Query Sequence  LQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVR. . CVRSNAAVCSSSVVAVCDSRAMVWD
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Template Sequence  VMTVRDVAVSDRHPYLFSVSEDKTVKCWDLEKNQIIRDYYGHLSGVRTVSIHPTLDLIAT
Template Known Secondary structure  SS

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   182.......190.........200.........210.........220.........230.........240.
 
   200.........210.........220.........230.........240.........250.........
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Query Sequence  VKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEG
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Template Sequence  AGRDSVIKLWDMRTRIPVITLVGHKGPINQVQCTPVDP. QVVSSSTDATVRLWDVVAGKT
Template Known Secondary structure  TTS
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   242.......250.........260.........270......... 280.........290.........300
 
   260...... ...270.........280..
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Query Sequence  STSKLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTL
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Template Sequence  MKVLTHHKRSVRATALHPKEFSVASACTDDIRSWGLAEGSLLTNFESEKTGIINTLSIN.
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   301........310.........320.........330.........340.........350.........
 
   283......290.........300.........310... ......320.........330....
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Query Sequence  LPFALATASSDGIISVFDCRYPSTAVRTIPS. . . . . . . . LHGDIMSLKYLKLHSDIIATG
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Template Sequence  QDDVLFAGGDNGVLSFYDYK. SGHKYQSLATREMVGSLEGERSVLCSTFDK. TGLRLITG
Template Known Secondary structure  TTSSS

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   360.........370......... 380.........390.........400......... 410.......
 
   335....340.........
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Query Sequence  GVDGSVVLWNLRSLP
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Template Sequence  EADKSIKIWKQPGLA
Template Known Secondary structure  TTT




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   418.420.........430..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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