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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank149Aligned Residues239
% Identity19%Templatec4lg8A_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:pre-mrna-processing factor 19; PDBTitle: crystal structure of prpf19 wd40 repeats
Resolution1.89 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.... .....120.........130...... ...140.........150...
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Query Sequence  LNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVCSEE
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Template Sequence  LHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPS
Template Known Secondary structure  SS
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   216...220.........230.........240.........250.........260.........270.....
 
   154.....160.........170......... 180.........190.........200
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Query Sequence  QTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . AAVCSSSVVAVCDSRAMVWDV
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Template Sequence  QDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDI
Template Known Secondary structure  SS
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   276...280.........290.........300.........310.........320.........330.....
 
   201........ 210.........220.......
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Query Sequence  KGATQPVHT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WVPSVDSSKNSPNEQEPL
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Template Sequence  QTGRVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPI
Template Known Secondary structure  TT


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   336...340.........350.........360.........370.........380.........390.....
 
   228.230.........240.........250.........260.........270.........280.......
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Query Sequence  LFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFAL
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Template Sequence  TSIAFSENGY. YLATAADDSSVKLWDLRKLK. . . NFKTLQLDNNFEVKSLIFDQ. SGTYL
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   396...400..... ....410.........420..... ....430.........440..... ....450
 
   288.290.........300.........310.........320.........330.........340.....
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Query Sequence  ATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL
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Template Sequence  ALGGTDVQIYICK. . . QWTEILHFTEHSGLTTGVAFGH. HAKFIASTGMDRSLKFYSL
Template Known Secondary structure  SSTT...TT

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   451........460... ......470.........480..... ....490.........500....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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