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Job DescriptionNg99_____
Confidence100.00%DateTue Mar 12 12:31:53 GMT 2019
Rank20Aligned Residues367
% Identity20%Templatec5thaA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:gem-associated protein 5; PDBTitle: gemin5 wd40 repeats in complex with a guanosyl moiety
Resolution1.80 Å
Model Dimensions (Å)X:72.190 Y:81.679 Z:59.088

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10. ........20..... ....30.........40.........50.......
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Query Sequence  GFNSSQNNFK. . . LPSSHLVGNVKVAD. KSWRNARSLSGLHDGGQNVTKSLLRSDITIED
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Template Conservation   
 


 
     


 
 
  
 


         
  
   
  
  
 
   
 
  
Template Sequence  GFTFSHHPGQYNLCATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPRVKDLIVSG
Template Known Secondary structure 

STT
TTTTS
TTTT



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SSSTT
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   6970.........80.........90.........100.........110.........120........
 
   58.60...... ...70.........80.........90.........100.........110......
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Query Sequence  SSCICVNNQ. QNYIVQAGVGGRFQTIKVIQKSRSDAKQFTNTTTVLDKKDSPIPNTNIFS
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Template Sequence  DEKGVVFCYWFNRNDSQHLFIEPRTIFCLTCSPHHEDLVAIGYKDGIVVIIDISKKGEVI
Template Known Secondary structure  TTSGGGT

SS

SS
TTTTS
GGGTT
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   129130.........140.........150.........160.........170.........180........
 
   117..120.........130.... .....140.........150.........160........
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Query Sequence  PQFSGKFPGPIHCMDMLN. . . QYLLIGSSNGECYVKTMDVASEKNNCLLDDSPNS. . . . .
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Template Sequence  H. RLRGHDDEIHSIAWCPLPGEGCYLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGG
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SSS

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TTSTTTT






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   189 190.........200.........210.........220.........230.........240.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                        
     

 
                            
Template Sequence  IDPTVKERLWLTLHWPSNQPTQLVSSCFGGELLQWDLTQSRRKYTLFSASSEGQNHSRIV
Template Known Secondary structure 

TT
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GGG
TT




TTSSSSS
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   277..280.........290.........300.........310.........320.........330......
 
   169170.........180.........190......
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Query Sequence  . . IVKCQTFSHSKLKKSDQSSILTTPSPEQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation    
             
                                           
Template Sequence  FNLCPLQTEDDKQLLLSTSMDRDVKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAI
Template Known Secondary structure  BTT

TTSTTTT
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   338.340.........350.........360.........370.........380.........390.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  GVGDGMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTY
Template Known Secondary structure  TTS
TT
SS
TT

TTT
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SSSTTTTS
TT
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   398.400.........410.........420.........430.........440.........450.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                 
                       
                    
Template Sequence  SNKPPQISSTYHKKTVYTLAWGPPVPPMSLSLALYSCGGEGIVLQHNPWKLSGEAFDINK
Template Known Secondary structure  SSS


SS

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TT

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TTS

TT
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   458.460.........470.........480.........490.........500.........510.......
 
   197..200.........210.........220.........230.........240........
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Query Sequence  . . . . . . . . YTFSTKINNVQIERSENPKNFHTLENNRLHIWSFEKDDAPIQTIQGSRSPLW
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Template Conservation                         .                       .          
 
Template Sequence  LIRDTNSIKYKLPVHTEISWKAD. GKIMALGNEDGSIEIFQIPNLKL. ICTIQQHHKLVN
Template Known Secondary structure  T

S




TT.SSTTS
TTTT.



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   525....530.........540....... ..550.........560.........570 .........580..
 
   249250...... ...260.........270...... ...280.........290
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Query Sequence  CSSWSSFN. . . . . . SNLILIGGVSKAVKLIDTRS. . . . . . . . . . . . MGIANANIQFSHCD
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Template Sequence  TISWHHEHGSQPELSYLMASGSNNAVIYVHNLKTVIESSPESPVTITEPYRT. . LSGHTA
Template Known Secondary structure 

S
SSSGGGGGSSS

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SS

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   583......590.........600.........610.........620.........630.... .....640
 
   291........300.........310.........320.........330.........340.........350
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Query Sequence  AITDVQWSPLLPYWFASCSTDGLIYVWDQRYAAEPIKILEGHNNVVKKISWSRSHVEVLA
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Template Sequence  KITSVAWSPHHDGRLVSASYDGTAQVWDALRE. EPLCNFRGHQGRLLCVAWSPLDPDCIY
Template Known Secondary structure 

TTSSSTTS
TTTT.


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   641........650.........660.........670.. .......680.........690.........
 
   351........360.........370....
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Query Sequence  SGGVDHSVKLWSLRTEPHHVLTTL
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Template Conservation 
   
  
 

         

  
Template Sequence  SGADDFCVHKWLTSMQDHSRPPQG
Template Known Secondary structure  TTS
GGG

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   700.........710.........720...
 
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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