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Job Descriptionexo99____
Confidence96.36%DateMon Feb 25 17:28:45 GMT 2019
Rank334Aligned Residues157
% Identity12%Templatec3pbpD_
PDB info PDB header:transport protein,structural proteinChain: D: PDB Molecule:nucleoporin nup82; PDBTitle: structure of the yeast heterotrimeric nup82-nup159-nup116 nucleoporin2 complex
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   171........180.........190.........200.........210.........220... .....
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Query Sequence  TLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNE. . QEPLL
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Template Sequence  QAPRYIFSSQNGTRIVFI. . QDNIIRWYNVLTDSLYH. . . . . . . . . SLNFSRHLVLDDTF
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   14.....20.........30. ........40........ .50.........60..
 
   229230.........240.........250..... ....260 .........270. .....
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Query Sequence  FAQWVPNSDSVVLTGSYSGSLVFTDIR. . . TKEGS. . . . . . . TSKLSLPARRG. . CMARC
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Template Sequence  HVISSTSGD. LLCLFND. NEIFVXEVPWGYSNVEDVSIQDAFQIFHYSIDEEEPKSSIKK
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   70........ .80..... ....90.........100.........110.........120.......
 
   277..280... ......290.........300.........310. ........320.....
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Query Sequence  ADFNTLL. . PFALATASSDGIISVFDCRYPSTAVRTI. . . . . . . . . PSLHGDIMSLKYLK
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Template Sequence  VLFHPKSYRDSCIVVLKEDDTITXFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK
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   130.........140.........150.........160.........170.........180.........
 
   326...330... ......340.
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Query Sequence  LHSDIIAT. . GGVDGSVV
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Template Sequence  . DGLTLYCLNTTEGGDIF
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   190.........200......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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