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Job Descriptionexo99____
Confidence34.65%DateMon Feb 25 17:28:45 GMT 2019
Rank396Aligned Residues133
% Identity11%Templatec3hxrA_
PDB info PDB header:structural proteinChain: A: PDB Molecule:nucleoporin nup120; PDBTitle: nucleoporin nup120 from s.cerevisiae (aa 1-757)
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEG
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Template Sequence  FSSANTLNGEWFHLQNPYDFTVRVPHFLFYV. . . . SPQFSVVFLEDGGLLGL. . . . . KKY
Template Known Secondary structure  S

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   139140.........150.........160......... 170.........180...... ...
 
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Query Sequence  STSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIM
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Template Sequence  LKSLTRFFSRSSDYDSVISCKLFHERYLIVLTQNCHLKIWDLT. SFTLIQDYDXVSQSDS
Template Known Secondary structure  B

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   205....210.........220.........230.........240....... ..250.........260...
 
   320 .........330.........340...
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Query Sequence  S. . . . . LKYLKLHSDIIATGGVDGSVVLW
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Template Sequence  DPVGEYLSLYN. NTLVTLLPLENGLFQXG
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   266...270...... ...280.........290...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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