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Job Descriptionexo99____
Confidence95.95%DateMon Feb 25 17:28:45 GMT 2019
Rank343Aligned Residues135
% Identity13%Templatec5ifeA_
PDB info PDB header:splicingChain: A: PDB Molecule:splicing factor 3b subunit 3; PDBTitle: crystal structure of the human sf3b core complex
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   204.....210.........220.........230.........240.........250.........260...
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Query Sequence  TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSK
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Template Sequence  PDGIRHIRADKRVNEWKTPGKKTIVKCAVNQ. . . RQVVIALTGGELVYFEMDPSGQLNEY
Template Known Secondary structure  TT
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STT


S...STTT
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   521........530.........540.........550. ........560.........570.......
 
   264.....270.........280..... ....290.........300.........310. ....
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Query Sequence  LSLPARRGCMARCADFNTLLPF. . . . . . ALATASSDGIISVFDCRYPSTAVRTI. . PSLH
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Template Sequence  TERKEM. SADVVCMSLAN. VPPGEQRSRFLAVGLVDNTVRIISL. DPSDCLQPLSMQALP
Template Known Secondary structure  S


.SS


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SSSSS

TTS
.SGGGTT
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   578.580... ......590.... .....600.........610......... 620.........630....
 
   316...320.........330.........340.....
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Query Sequence  GDIMSLKYLKLHSDIIATGGVDGSVVLWNL
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Template Sequence  AQPESLCIVE. MFLYLNIGLQNGVLLRTVL
Template Known Secondary structure  S
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   635....640.... .....650.........660...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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