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Job Descriptionexo99____
Confidence99.96%DateMon Feb 25 17:28:45 GMT 2019
Rank54Aligned Residues255
% Identity12%Templatec3jrpA_
PDB info PDB header:transport protein, structural proteinChain: A: PDB Molecule:fusion protein of protein transport protein sec13 and PDBTitle: sec13 with nup145c (aa109-179) insertion blade
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.... .....120.........130.... .....140.........150..
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Query Sequence  LNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQT. . . VEDSDGELQRRTCLVCSE
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Template Sequence  IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH
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   4.....10.........20.........30.........40.........50.........60...
 
   153 ......160.........170......... 180.........190...
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Query Sequence  E. . QTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . . . . . AAVCSSSVVAVCDS
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Template Sequence  PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG
Template Known Secondary structure  GGG
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   64.....70.........80.........90.........100.........110.........120...
 
   194.....200......... 210
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Query Sequence  RAMVWDVKGATQPVHT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . W
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Template Sequence  KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATKESRKFVTGGADNLVKIWKYNSDAQT
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   124.....130.........140.........150.........160.........170.........180...
 
   211........220.........230.........240.........250.........260.. .......
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Query Sequence  VPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTS. KLSLPAR
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Template Sequence  YVLESTLEGHSDWVRDVAWSPTVLLRS. YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK
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   194.....200.........210.........220 .........230.........240.........250..
 
   270.........280.........290.........300.........310.........320.........
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Query Sequence  RGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSD
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Template Sequence  FPDVLWRASWSL. SGNVLALSGGDNKVTLWKENLEGKWEPAGEVHDGPCQDNAKLI. MKE
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   253......260.... .....270.........280.........290.........300....... ..310
 
   330...... ...340.........350.....
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Query Sequence  IIATGGV. . . . . . . DGSVVLWNLRSLPTYRVGR
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Template Sequence  RRFTASYTFAKFSTGSMLLTKDIVGKSGVSIKR
Template Known Secondary structure  TT

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   1143......1150.........1160.........1170.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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