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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank73Aligned Residues245
% Identity14%Templatec3iz6a_
PDB info PDB header:ribosomeChain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.... .....120.........130...... ...140.........150..
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Query Sequence  QWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVCSE
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Template Sequence  CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP
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   5960.........70.........80.........90.........100.........110........
 
   153......160.........170.. .......180.........190.
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Query Sequence  EQTPVGDIVVPPSKHAVSTL. . . . . . . . . . . . . . . . . . . . . VRCVRSNAAVCSSSVVAVC
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Template Sequence  NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG
Template Known Secondary structure  TSS

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   119120.........130.........140.........150.........160.........170........
 
   192.......200.........210.........220.........230.........240.........250.
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Query Sequence  DSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVF
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Template Sequence  DQTCVLWDVTTGQRISIFG. . . . . . SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL
Template Known Secondary structure  TS

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   179180.........190....... ..200.........210.........220.........230..
 
   252.......260......
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Query Sequence  TDIRTKEGSTSKLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD
Template Known Secondary structure  TTTT






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   233......240.........250.........260.........270.........280.........290..
 
   267..270.........280.........290.........300.........310. ........320.
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Query Sequence  . PARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTI. . . . PSLHGDIMSL
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Template Sequence  RNDNELPIVTSVAFSI. SGRLLFAGYSNGDCYVWDTL. LAEMVLNLGTLQNSHEGRISCL
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   293......300........ .310.........320........ .330.........340.........350
 
   322.......330.........340.........
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Query Sequence  KYLKLHSDIIATGGVDGSVVLWNLRSLP
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Template Sequence  GLSS. DGSALCTGSWDKNLKIWAFSGHR
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   351... .....360.........370.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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