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Job Descriptionexo99____
Confidence99.87%DateMon Feb 25 17:28:45 GMT 2019
Rank193Aligned Residues240
% Identity12%Templatec3bg1E_
PDB info PDB header:protein transport, hydrolaseChain: E: PDB Molecule:protein sec13 homolog; PDBTitle: architecture of a coat for the nuclear pore membrane
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   104.....110.... .....120.........130.... .....140.........150........
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Query Sequence  EPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQT. . . VEDSDGELQRRTCLVCSEEQTPVG
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Template Sequence  DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNI
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GGG
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   14.....20.........30.........40.........50.........60.........70...
 
   159160.........170......... 180.........190.........
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Query Sequence  DIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . . . . . . . AAVCSSSVVAVCDSRAMVWD
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Template Sequence  LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT
Template Known Secondary structure  TTS


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   74.....80.........90.........100.........110.........120.........130...
 
   200.... .....210.........220.........230.........240.........250.......
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Query Sequence  VKGAT. . QPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTK
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Template Sequence  YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPPSGQKPNYIKRFASGGCDNLIKLWKEEED
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SSS


BTTSSSS
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B

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   134.....140.........150.........160.........170.........180.........190...
 
   258.260.........270.........280. ........290.........300..... ....310.
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Query Sequence  EGSTSKLSLPARRGCMARCADFNT. . . LLPFALATASSDGIISVFDCRYPS. . . TAVRTI
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Template Sequence  GQWKE. EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL
Template Known Secondary structure  S
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   200.... .....210.........220.........230.........240.........250........
 
   312.......320.........330.........340.....
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Query Sequence  PSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL
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Template Sequence  HKFNDVVWHVSWSI. TANILAVSGGDNKVTLWKE
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SS

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   259260.........270.. .......280.........290.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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