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Job Descriptionexo99____
Confidence99.90%DateMon Feb 25 17:28:45 GMT 2019
Rank180Aligned Residues257
% Identity13%Templatec2oitA_
PDB info PDB header:oncoproteinChain: A: PDB Molecule:nucleoporin 214kda; PDBTitle: crystal structure of the n-terminal domain of the human proto-oncogene2 nup214/can
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   97..100.........110.........120.........130.........140.........150......
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Query Sequence  WLNLPSTEPLSSVEWCEGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTP
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Template Sequence  LVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV. . . PMKFPIHHLALSCDNLT
Template Known Secondary structure  TT




TT

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   50.........60.........70.........80......... 90.........100......
 
   157..160.........170.........180.........190.........200.........210......
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Query Sequence  VGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDS
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Template Sequence  L. . . . . . . . . . . . . . . . . . . . . . . . . SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAY
Template Known Secondary structure  .........................TTT
TT
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S
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   107 ..110.........120.........130.........140.
 
   217..220.........230.........240.........250.........260.........270......
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Query Sequence  SKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARC
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Template Sequence  HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK. . . . VCATLPSTVAVTS
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SGGGS
SS
TTTTS
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GGG
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   142.......150.........160.........170.........180.... .....190.......
 
   277..280.........290.........300.......
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Query Sequence  ADFNTLLPFALATASSDGIISVFDCRYPSTA. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VCWSP. KGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI
Template Known Secondary structure 
T.TSS
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TT




TT

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   198.200.. .......210.........220.........230.........240.........250......
 
   308.310.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VRTIPSLHGD
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Template Sequence  VYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLV
Template Known Secondary structure  TT

SSS




TTT






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   257..260.........270.........280.........290.........300.........310......
 
   318.320.........330.........340..... ....350.........360.........370....
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Query Sequence  IMSLKYLKLHSDIIATGGVDGSVVLWNL. . RSLPTYRVGRAQYKCPVFDLITTPWSVEQ.
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Template Sequence  LAASAAST. EVSILARQSDQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEI
Template Known Secondary structure  TT
S.B

TTSS

GGG

B

B
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   317..320.... .....330.........340.........350.........360.........370.....
 
   375....380.......
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Query Sequence  . . . . . . . . . . . . HVIGVTCGGELTL
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Template Sequence  TISDEKTLPPAPVLMLLSTDGVLCP
Template Known Secondary structure  TT



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   376...380.........390.........400
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Lawrence Kelley, Michael Sternberg 
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