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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank70Aligned Residues312
% Identity13%Templatec4a11B_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:dna excision repair protein ercc-8; PDBTitle: structure of the hsddb1-hscsa complex
Resolution3.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20 .........30.........40.........50.........60.........70.
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Query Sequence  STSAWRKE. VQLRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRENVLAIGLNPLS
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Template Sequence  TRRVLGLELNKDRDVERIHGGGINTLDIEP. . . . . . . . . VEGRYMLSGGSDGVIVLYDLE
Template Known Secondary structure  T
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   24.....30.........40.........50... ......60.........70....
 
   72.......80.........90.........100.........110.... .....120........
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Query Sequence  TSGACVGLLTMESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVA
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Template Sequence  NSSRQSYYTCKAVCSIGRDH. . . . . . . PDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW
Template Known Secondary structure 

SSSS


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   75....80.........90.... .....100.........110.........120.......
 
   129130.........140.........150..... ....160.........170.
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Query Sequence  DVSPQTVEDSDGELQRRTCLVCSEEQT. . . . . . . . . . . . . . . . . PVGDIVVPPSKHAVST
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Template Sequence  DTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ
Template Known Secondary structure  TTTT
SS

SS
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   128.130.........140.........150.........160.........170.........180.......
 
   172.......180.........190.........200......... 210.........220......
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Query Sequence  LVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHT. . . . . WVPSVDSSKNSPNEQEP
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Template Sequence  EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGK
Template Known Secondary structure 

SS
TTTTS
TT
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   188.190.........200.........210.........220.........230.........240.......
 
   227..230.........240.........250.........260......... 270.........280.....
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Query Sequence  LLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPAR. RGCMARCADFNTLLPF
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Template Sequence  VNGLCFTSDGL. HLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCG. CSS
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   248.250........ .260.........270.........280.........290.........300.. ...
 
   286...290.........300.........310.........320.........330.........340....
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Query Sequence  ALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWN
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Template Sequence  EFVFVPYGSTIAVYTVY. SGEQITMLKGHYKTVDCCVFQS. NFQELYSGSRDCNILAWV
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TTTT.T




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   306...310.........320.. .......330.........340.... .....350.........360..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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