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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank74Aligned Residues244
% Identity16%Templatec4lg9A_
PDB info PDB header:unknown functionChain: A: PDB Molecule:f-box-like/wd repeat-containing protein tbl1xr1; PDBTitle: crystal structure of tbl1xr1 wd40 repeats
Resolution2.28 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   92.......100.........110.... .....120.........130.... .....140......
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Query Sequence  MSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQT. . . VEDSDGELQRRT
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Template Sequence  PPNKAVVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLSENTQLVLRHCVPSNKDVT
Template Known Secondary structure 
GGG


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SS

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   158.160.........170.........180.........190.........200.........210.......
 
   147..150.........160.........170.........180.
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Query Sequence  CLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAA. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SLDWNSEGTLLATGSYDGFARIWTKDGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKT
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TTSSTTSTTS

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   230.........240.........250.........260.........270.........280.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHT
Template Known Secondary structure  TTTT


SS
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TT
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   290.........300.........310.........320.........330.........340.........
 
   182.......190.........200.........210.........220.........230.
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Query Sequence  . . . . . . . . . . VCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQ
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Template Sequence  NEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPG. . . T
Template Known Secondary structure  S

TTSSTTSTT
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   350.........360.........370.........380.........390.........400..... .
 
   232.......240.........250.........260.........270.........280.........290.
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Query Sequence  WVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATAS
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Template Sequence  NNPNANLMLASASFDSTVRLWDVDRGIC. . . . IHTMTKHQEPVYSVAFSP. DGRYLASGS
Template Known Secondary structure  SSTTS


TTS
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   407..410.........420.........430.... .....440.........450.. .......460.
 
   292.......300.........310.........320.........330.........340......
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Query Sequence  SDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLR
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Template Sequence  FDKCVHIWNTQ. TGALVHSYRGT. GGIFEVCWNA. AGDKVGASASDGSVCVLDLR
Template Known Secondary structure  TTSTT.T


S.S

T.TSSTTS


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   462.......470.. .......480... ......490... ......500.........510...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Lawrence Kelley, Michael Sternberg 
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