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Job DescriptionNg99_____
Confidence99.93%DateTue Mar 12 12:31:53 GMT 2019
Rank212Aligned Residues354
% Identity10%Templatec1fwxB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10.........20.........30.........40.........50... ......60......
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Query Sequence  FKLPSSHLVGNVKVADKSWRNARSLSGLHDGGQNVTKSLLRSDI. . . TIEDSSCICVNNQ
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Template Sequence  YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLA
Template Known Secondary structure 

BTT
TT

SSS

TTT
TTTBTT

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   21........30.........40.........50.........60.........70.........80
 
   67..70.........80.........90.........100.........110.........120.....
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Query Sequence  . QNYIVQAGVGGRFQTIKVIQKSRSDAKQFTNTTTVLDKKDSPIPNTNIFSPQFSGKFPG
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Template Sequence  ANGKRIHDNGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCD. VMKCDAILEIPNAK
Template Known Secondary structure  TT
SS




B

TTTTTTTT.TT
SS

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   868.870.........880.........890.........900.........910.. .......920......
 
   126...130.........140..... ....150.........160.....
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Query Sequence  PIHCMDMLNQYLLIGSSNGE. . . . . . . . . . . . . . . . . . . . CYVKTMDVASEKNNCLLDDS
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Template Sequence  GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS
Template Known Secondary structure  S

SSB
S
S
SS
SSSSTT
GGGTTTTS
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   126...130.........140.........150.........160.........170.........180.....
 
   166...170.........180.........190....
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Query Sequence  PNSIVKCQTFSHSKLKKSDQSSILTTPSP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GN. LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL
Template Known Secondary structure  S
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SSSSS
TT

SST
SSTT
S
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   185. ...190.........200.........210.........220.........230.........240...
 
   195....200.........210.........220.........230.......
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Query Sequence  . . . . . . . . . . . . . . . . . EQYTFSTKINNVQIERSENPKNFHTLENNRLHIWSFEKDDAPI
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Template Sequence  NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV.
Template Known Secondary structure  TT
SGGG

SSSS



TTSS
TTSSBGGG.
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   244.....250.........260.........270.........280.........290.........300..
 
   238.240.........250.........260.........270.........280.........290.......
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Query Sequence  QTIQGSRSPLWCSSWSSFNSNLILIGGVSKAVKLIDTRSMGIANANIQFSHCDAITDVQW
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Template Sequence  . . FYENADPRSAVVAEPELGLGPLHTAFDGRGNAY. . . . . . . . . . . . . . TSLFLDSQVVK
Template Known Secondary structure  ..S


GGGG

B

S

TTS..............TTTT
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   303......310.........320.........330..... ....340......
 
   298.300.........310.........320.........330.........340.........350.......
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Query Sequence  SPLLPYWFASCSTDGLIYVWDQRYAAEPIKILEGHNNVVKKISWSRSHVEVLASGGVDHS
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Template Sequence  WN. IEDAIRAYAGEKVDPIKD. . . . KLDVHYQPGHLKTVMGETLDA. TNDWLVCLSKFSK
Template Known Secondary structure  .TT
S


....
SS
TTTTSTT
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SSS

G
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   347. .350.........360...... ...370.........380....... ..390.........400
 
   358.360.........370.........380.........390.........400.........410.
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Query Sequence  VKLWSLRTEPHHVLTTLDKGFFSDSILGLSFSNVTPNQLFANSASGELLAISVG
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Template Sequence  DRFLNVGP. . . . . . . . . . . . . . . . . . . . . . . LKPENDQLIDISGDKMVLVHDGP
Template Known Secondary structure  GGS



S.......................S


SSSS
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   401....... .410.........420.........430.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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