Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank93Aligned Residues318
% Identity6%Templatec5sumA_
PDB info PDB header:ribosomal proteinChain: A: PDB Molecule:ribosome biogenesis protein nsa1; PDBTitle: ribosome assembly factor nsa1
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60.........70.........80.........90.........100.....
Predicted Secondary structure 















































Query SS confidence 



























































Query Sequence  AKVFSTAQLAAHHRENVLAIGLNPLSTSGACVGLLTMESAEAKLSGMSKMQWLNLPSTEP
Query Conservation 


 






  


  

 
  

 

  
 


 



  



 
 








 
Alig confidence 



























































Template Conservation   
  
  
      
                    
                
     
 
Template Sequence  CVDSGSIKEVLCNIGTDTSVQSALQPFHVAPHLAEGLKAYVDRMWVISEDEAILARNSGV
Template Known Secondary structure  GGGT
TTTTSTTSB

S



GGG
TTTTT
Template Predicted Secondary structure 




























Template SS confidence 



























































   12.......20.........30.........40.........50.........60.........70.
 
   106...110.... .....120.........130.........140 .........150....
Predicted Secondary structure 


..













.........








Query SS confidence 








. .

























. . . . . . . . .













Query Sequence  LSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVEDSDG. . . . . . . . . ELQRRTCLVCSEEQ
Query Conservation 








.. 




 










 

  
 
......... 
    


 
 

Alig confidence 








..

























.........













Template Conservation 
             
   
     
                                   
Template Sequence  VELVKISKHLKENEALQVDDDLPKFDISEFEITSSVSDLFDDAKLESLVDGFVTLCPIKN
Template Known Secondary structure 




SS


















Template Predicted Secondary structure 



























Template SS confidence 



























































   72.......80.........90.........100.........110.........120.........130.
 
   155....160.........170. ........180.........190........
Predicted Secondary structure 














................

















Query SS confidence 
















. . . . . . . . . . . . . . . .


























Query Sequence  TPVGDIVVPPSKHAVST. . . . . . . . . . . . . . . . LVRCVRSNAAVCSSSVVAVCDSRAMVW
Query Conservation    
 


  

 
  

................

 

  
   









 




Alig confidence 
















................


























Template Conservation    
 
   

 
 

                   
              

  
  
 

Template Sequence  NTFVAATKSGLLHIIKKGEDKKLIKLASLGLKAPVEFLQLYDLEKYIFAYGGEENLIKLV
Template Known Secondary structure 
TTS
TTS


S

S




TT
Template Predicted Secondary structure 


























Template SS confidence 



























































   158.160.........170.........180.........190.........200.........210.......
 
   199200.........210...... ...220.........230.........240......
Predicted Secondary structure 














............














Query SS confidence 

















. . . . . . . . . . . .





























Query Sequence  DVKGATQPVHTWVPSVDS. . . . . . . . . . . . SKNSPNEQEPLLFAQWVPNSDSVVLTGSYS
Query Conservation 





 

  
  
   ............
 

 


  
 















 
Alig confidence 

















............




















.







Template Conservation 
                                                  . 
 
 
 
Template Sequence  EIDSSFQSLKQIWEAKNVKNDRLDMRVPVWPMALRFLEPSPGKTEKGKLNY. QFAAITRW
Template Known Secondary structure 
TTSS







TTS









S


TTS


.TT
Template Predicted Secondary structure 



























.

Template SS confidence 



























































   223......230.........240.........250.........260.........270... ......280.
 
   247..250.........260.........270.........280.... .....
Predicted Secondary structure 

























.................
Query SS confidence 





































. . . . . . . . . . . . . . . . .




Query Sequence  GSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLP. . . . . . . . . . . . . . . . . FALAT
Query Conservation 











  



 

 

   
 





 

................. 



Alig confidence 











.
























.................




Template Conservation 
 
   
     .              
                             
  
Template Sequence  SHLTKYSTQHGR. KPFAQIDLLPNREPLSQMEVFDAKGENVVSSLGNFQSETFNELNVIT
Template Known Secondary structure  STTT
S.S
S
SGGG


TT



B
TT

B

S
GGG
Template Predicted Secondary structure 





.




















Template SS confidence 



























































   282.......290... ......300.........310.........320.........330.........340
 
   290.........300.........310.........320.........330.........340.........
Predicted Secondary structure 





























Query SS confidence 



























































Query Sequence  ASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLP
Query Conservation 

 









 
 
 



 



 
 





 




















 
Alig confidence 



































..





















Template Conservation        
   
            

   
  
    ..   
 
   
  




     
Template Sequence  TDYKKNVFKFDGNGRMLGKVGRDDITGSSTYIHVHD. . GKYLLQGGLDRYVRIFDIKTNK
Template Known Secondary structure  SSS
TTS
SSTTT

S


T..TT
TT
TTT

Template Predicted Secondary structure 
















..










Template SS confidence 



























































   341........350.........360.........370...... ...380.........390........
 
   350.........360.........
Predicted Secondary structure 














Query SS confidence 



















Query Sequence  TYRVGRAQYKCPVFDLITTP
Query Conservation 

 
 

     
  
    
Alig confidence 
..
















Template Conservation   ..
  
     
  
    
Template Sequence  M. . LVKVYVGSRINFIVMLD
Template Known Secondary structure  ..
SS


Template Predicted Secondary structure  ..





Template SS confidence 



















   399 400.........410......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D