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Job DescriptionNg99_____
Confidence100.00%DateTue Mar 12 12:31:53 GMT 2019
Rank35Aligned Residues326
% Identity21%Templatec5i2tA_
PDB info PDB header:biosynthetic proteinChain: A: PDB Molecule:periodic tryptophan protein 2; PDBTitle: domain characterization of the wd protein pwp2 and their relevance in2 ribosome biogenesis
Resolution2.54 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   71........80.........90.........100.........110.........120.........130
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Query Sequence  VQAGVGGRFQTIKVIQKSRSDAKQFTNTTTVLDKKDSPIPNTNIFSPQFSGKFPGPIHCM
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Template Sequence  KFSNLLGTVYRQGNITFSDDGKQLLSPV. . GNRVSVFDLIN. . NKSFTFEYEHRKNIAAI
Template Known Secondary structure  T
S

SS


TTSS
..SSSTTT..T
S


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   6...10.........20.........30... ......40.... .....50.........60.
 
   131........140.........150.........160.........170.........180.........190
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Query Sequence  DMLNQYLLIGSSNGECYVKTMDVASEKNNCLLDDSPNSIVKCQTFSHSKLKKSDQSSILT
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Template Sequence  DLNKQGTLLISIDEDGRAILVNFKARNVLHHF. NFKEKCSAVKFSPDGRLFALAS. GRFL
Template Known Secondary structure 
TTS
TTSTTT

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SS

TTSS.TT
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   62.......70.........80.........90... ......100.........110..... ....
 
   191... .....200.........210.........220.........230...
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Query Sequence  TPSP. . . . . . . . . . . . . . . . . EQYTFSTKINNVQIERSENPKNFHTLENNRLHIWSFEKD
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Template Sequence  QIWKTPDVNKDRQFAPFVRHRVHAGHFQDITSLTWSQD. SRFILTTSKDLSAKIWSVDSE
Template Known Secondary structure 


TTT



SS



SS

TT.SSTTS

SST
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   120.........130.........140.........150....... ..160.........170........
 
   234... ..240.........250.........260.........270.........280......
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Query Sequence  DAPI. . QTIQGSRSPLWCSSWSSFNSNLILIGGVSKAVKLIDTRSMGIANANIQF. . . . .
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Template Conservation                         .                                    
Template Sequence  EKNLAATTFNGHRDYVMGAFFSH. DQEKIYTVSKDGAVFVWEFTSWRITKKHFFYANQAK
Template Known Secondary structure  T

S
S


SS

T.TSSTTS




SS

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   179180.........190.........200. ........210.........220.........230.......
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  VKCVTFHPATRLLAVGFTSGEFRLYDLPDFTLIQQLSMGQNPVNTVSVNQTGEWLAFGSS
Template Known Secondary structure  TTTTSSSTTTTS
SS



TTS
T
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   263......270.........280.........290.........300.........310.........320..
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  KLGQLLVYEWQSESYILKQQGHFDSTNSLAYSPDGSRVVTASEDGKIKVWDITSGFCLAT
Template Known Secondary structure  TTTTTTT






TTSSTTS
TTT

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   323......330.........340.........350.........360.........370.........380..
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  FEEHTSSVTAVQFAKRGQVMFSSSLDGTVRAWDLIRYRNFRTFTGTERIQFNCLAVDPSG
Template Known Secondary structure 


SS
TTTTTTS
TTTTB




SS





TT
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   383......390.........400.........410.........420.........430.........440..
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  EVVCAGSLDNFDIHVWSVQTGQLLDALSGHEGPVSCLSFSQENSVLASASWDKTIRIWSI
Template Known Secondary structure  S
SS
SSTTT

B


B
TTSS

SSTT
TTS
S
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   443......450.........460.........470.........480.........490.........500..
 
   287..290.........300.........310.........320.........330..
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Query Sequence  . . . . . . . . . . SHCDAITDVQWSPLLPYWFASCSTDGLIYVWDQRYAAEPIKILEGH. . . .
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Template Sequence  FGRSQQVEPIEVYSDVLALSMRP. DGKEVAVSTLKGQISIFNIEDA. KQVGNIDCRKDII
Template Known Secondary structure  SS

S

S

SS

S.SSSSSSTTTT.





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   503......510.........520..... ....530.........540....... ..550.........560
 
   333......340.........350.........360.........370.........380.........390..
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Query Sequence  NNVVKKISWSRSHVEVLASGGVDHSVKLWSLRTEPHHVLTTLDKGFFSDSILGLSFSNVT
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Template Sequence  SKFFTTIHYSF. DGMAIVAGGNNNSICLYDVPNE. . VLLKRFIVSRNEVRVTSVQFSP. T
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S
T.TSS
SSSTTTT..







T.T
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   577..580....... ..590.........600......... 610.........620.........630. .
 
   393......400.........410.
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Query Sequence  PNQLFANSASGELLAISVG
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Template Sequence  ANAFAAASTEGLL. IYSTN
Template Known Secondary structure  SSTT.

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   690.........700.. .....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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