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Job Descriptionexo99____
Confidence99.35%DateMon Feb 25 17:28:45 GMT 2019
Rank251Aligned Residues251
% Identity12%Templatec1l0qC_
PDB info PDB header:protein bindingChain: C: PDB Molecule:surface layer protein; PDBTitle: tandem yvtn beta-propeller and pkd domains from an archaeal surface2 layer protein
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   81........90.........100.........110.... .....120.........130.......
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Query Sequence  TMESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTVED
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Template Sequence  SESDNISVIDVTSNKVTATIPVGSNPXGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA
Template Known Secondary structure  GGGTTTTT
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   910.........20.........30.........40.........50.........60........
 
   138.140.........150.........160......... 170.........180...
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Query Sequence  SDGELQRRTCLVCSEEQTPVGDIVVPPSKHAV. . . . . . . . . . . . . . STLVRCVRSNAAVC
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Template Sequence  TVPAGSSPQGVAVSPDGKQVYVTNXASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGK
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   6970.........80.........90.........100.........110.........120........
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  SSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTG
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Template Sequence  KLYVTNNGDKTVSVINTVTKA. . . . . . . . . . . . VINTVSVGRSPKGIAVTPDGTKVYVAN
Template Known Secondary structure  TTTTTTTT............

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   129130.........140......... 150.........160.........170......
 
   244.....250.........260.........270.........280.........290.........300...
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Query Sequence  SYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRY
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Template Sequence  FDSXSISVIDTVTNS. . . . . VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSXIDT
Template Known Secondary structure  TTTTTTTT.....
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   177..180.........190. ........200.........210.........220.........230.
 
   304.....310.........320.........330.........340.........
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Query Sequence  PSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLP
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Template Sequence  GTNKITARIPVGPDPAGIAVTP. DGKKVYVALSFNTVSVIDTATNT
Template Known Secondary structure  TTT

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   232.......240.........250... ......260.........270......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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