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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank65Aligned Residues302
% Identity14%Templatec3acpA_
PDB info PDB header:chaperoneChain: A: PDB Molecule:wd repeat-containing protein ygl004c; PDBTitle: crystal structure of yeast rpn14, a chaperone of the 19s regulatory2 particle of the proteasome
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   83......90.........100.........110.... .....120.........130...... ...
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Query Sequence  ESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSD
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Template Sequence  DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ
Template Known Secondary structure  TT
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   74.....80.........90.........100.........110.........120.........130...
 
   140.........150.........160.........170......... 180......
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Query Sequence  GELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . AAVCSSS
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Template Sequence  AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV
Template Known Secondary structure  SSSS

TTSSTTS
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   134.....140.........150.........160.........170.........180.........190...
 
   187..190.........200.........210.... .....220.........230...
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Query Sequence  VVAVCDSRAMVWDVKGATQPVHTWVPSV. . . . . . . . . . . . . DSSKNSPNEQEPLLFAQWV
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Template Conservation          
                       
                    
      
Template Sequence  LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG
Template Known Secondary structure  TTS
TTTT

TT
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   194.....200.........210.........220.........230.........240.........250...
 
   234.....240.........250.........260.........270.........280.........290...
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Query Sequence  PNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSD
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Template Sequence  TYGK. YVIAGHVSGVITVHNVFSKE. . . QTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN
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TT.TTS
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   254... ..260.........270....... ..280.........290.........300.........
 
   294.....300...... ...310.........320.........330.........340.........350..
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Query Sequence  GIISVFDCRYPST. AVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYR
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Template Sequence  GMLAQWDLRSPECPVGEFLINEGTPINNVYFAA. . GALFVSSGFDTSIKLDIISDPESER
Template Known Secondary structure  STTSTTS
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   310.........320.........330.........340.. .......350.........360.......
 
   353. .....360......... 370.........380.........390
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Query Sequence  VG. . . . . . . . RAQYKCPVFDLITTP. WSVEQHVIGVTCGGELTLTGL
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Template Sequence  PAIEFETPTFLVSNDDEVSQFCYVSDDESNGEVLEVGKNNFCALYNL
Template Known Secondary structure 
TTS


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   368.370.........380.........390.........400.........410....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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