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Job DescriptionNg99_____
Confidence100.00%DateTue Mar 12 12:31:53 GMT 2019
Rank9Aligned Residues402
% Identity13%Templatec5n1aB_
PDB info PDB header:translationChain: B: PDB Molecule:utp4; PDBTitle: crystal structure of utp4 from chaetomium thermophilum
Resolution2.15 Å
Model Dimensions (Å)X:71.698 Y:80.342 Z:49.684

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20..... ....30.........40........ .50.....
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Query Sequence  QNNFKLPSSHLVGNVKVAD. KSWRNARSLSGLHDGGQNVTKSL. . . . . . . . . . LRSDITI
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Template Sequence  HGKSRLFSIGYTTTITEWDLEKARAKKHASGQHGEIWCFGVQPLPHKANAAAAQNRKLVA
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TS
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   97..100.........110.........120.........130.........140.........150......
 
   56...60.........70 .........80.........90.........100.........110
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Query Sequence  EDSSCICVNNQQNYI. . . . . VQAGVGGRFQTIKVIQKSRSDAKQFTNTTTVLDKKDSPIP
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Template Sequence  GTVDGNLVLYSIEDGDLKFQKTLTRTSKKTKFVSIAFQSHN. . IVIVGCSNSTICAYDVR
Template Known Secondary structure  TTS

GGG






TT

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   157..160.........170.........180.........190....... ..200.........210....
 
   111........120.........130.........140.........150.........160.........170
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Query Sequence  NTNIFSPQFSGKFPGPIHCMDMLNQYLLIGSSNGECYVKTMDVASEKNNCLLDDSPNSIV
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Template Sequence  TGTXLRQXTLGSKNIIVWAVKCLPNGDIV. SGDSTGQVCIWDGKTYTQAQRIQSHTQDVL
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   216...220.........230.........240.... .....250.........260.........270....
 
   171........180.........190.... .....200.........210.....
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Query Sequence  KCQTFSHSKLKKSDQSSILTTPSP. . . . . . . . . . . . . . . EQYTFSTKINNVQIERSENPK
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Template Sequence  CLSVSADGSKIISGGXDRRTAVYEPXAGQSGRWSKVFHRRYHQHDVKAXASFEGKG. XSV
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   281........290.........300.........310.........320.........330...... ...
 
   216...220.........230.........240.........250.........260.........270.....
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Query Sequence  NFHTLENNRLHIWSFEKDDAPIQTIQGSRSPLWCSSWSSFNSNLILIGGVSKAVKLIDTR
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Template Sequence  VVSGGSDASPIVLPLRALGKEFHRTLPHLPQHPTVLSAP. KARYILSWW. ENEIRIWHLL
Template Known Secondary structure  TT


GGGTTSS



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   340.........350.........360.........370........ .380....... ..390.......
 
   276...280.........290.........300.........310.........320
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Query Sequence  SMGIANANIQFSHCDAITDVQWSPLLPYWFASCSTDGLIYVWDQR. . . . . . . . . . . . . . .
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Template Sequence  NNRKFLAQVLIKGASHITSASISE. DGTLLAAST. PTDVKVFHLDPAAAQRNGQLYIKKV
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SSS



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   398.400.........410.........420. ........430 .........440.........450.....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NXTGTGLGATRVQISPDKRWICWAEEGSKVXISRVHATESADGISYTVSVPHKLHRLRRQ
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S


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   473......480.........490.........500.........510.........520.........530..
 
   321........330.........340.........350.........360........ .370......
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Query Sequence  . YAAEPIKILEGHNNVVKKISWSRSHVEVLASGGVDHSVKLWSLRTEPH. . . HVLTTLDK
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Template Sequence  IPKHILLGGLGSYDRNVSQIAFSA. DSRXLSVADLAGYIDTWVLRGPGERWARNPKAAXI
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TSTTTTGGG

T.TS
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   533......540.........550...... ...560.........570.........580.........590.
 
   377..380.........390 .........400.........410.......
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Query Sequence  GFFSDSILGLSFSN. . . . VTPNQLFANSASGELLAISVGSQVLDP
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Template Sequence  PKLSAAPVVLSFSPTPRDDGDYDLLVVTTLKQLLIFNPLRGXLSE
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   624.....630.........640.........650.........660........
 
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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