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Job Descriptionexo99____
Confidence94.49%DateMon Feb 25 17:28:45 GMT 2019
Rank354Aligned Residues123
% Identity13%Templatec5a9qS_
PDB info PDB header:transport proteinChain: S: PDB Molecule:nuclear pore complex protein nup160; PDBTitle: human nuclear pore complex
Resolution23.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  VVLTGSYSGSLVFTDIRTKEGSTSKLSL. PARRGCMARCADFNTLLPFALATASSDGIIS
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Template Sequence  VLKLPPYPGMVSVVELKQSSVMQRLLIRGDQSPSDRPLSLAVHC. VDAFIFALCQDHKLR
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   240.........250.........260.........270.........280... ......290........
 
   298.300.........310. ........320.........330.. .. ....
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Query Sequence  VFDCRYPSTAVRTI. . . . . PSLHGDIMSLKYLKLHSDIIA. . . . . TG. . . . . . . . . GVDG
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Template Sequence  MWSYK. EQMCLMVADMLEYVPVKGHKLRLAYSPTMGLYLGIYMHAPKRGQFCIFQLVSTN
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   310.... .....320.........330.........340.........350.........360........
 
   339340.........350.........360.........370
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Query Sequence  SVVLWNLRSLPTYRVGRAQYKCPVFDLITTPW
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Template Sequence  RYSLDHISSLFT. . . . . . . SQETLIDFALTST
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   380.........390. ........400....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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