Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank143Aligned Residues291
% Identity11%Templatec6f1to_
PDB info PDB header:motor proteinChain: O: PDB Molecule:dynactin subunit 3; PDBTitle: cryo-em structure of two dynein tail domains bound to dynactin and2 bicdr1
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2930.........40.........50.........60.........70.........80........
Predicted Secondary structure 




















































Query SS confidence 



























































Query Sequence  NHPSIIAHSDILPPATTAKVFSTAQLAAHHRENVLAIGLNPLSTSGACVGLLTMESAEAK
Query Conservation 

 
 







 

 


 






  


  

 
  

 

  
 


 



  
Alig confidence 





















































......
Template Conservation       
  
   
        
           

 
 

              ......
Template Sequence  SKHRVVSCLDWSSQYPELLVASYNNNEDAPHEPDGVALVWNMKYKKTTPEYVFH. . . . . .
Template Known Secondary structure 
SS
B

B
SSSSS



TTSTTS
SS
SSS

SS
S


B......
Template Predicted Secondary structure 






















......
Template SS confidence 



























































   251........260.........270.........280.........290.........300....
 
   8990.........100.........110.... .....120.........130..... .
Predicted Secondary structure 














...








.........
Query SS confidence 

























. . .




















. . . . . . . . .
Query Sequence  LSGMSKMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTV. . . . . . . . . E
Query Conservation 



 
 








 








... 




 










 

......... 
Alig confidence  .............












...




















.........
Template Conservation  .............    
  
 
 
    

 

  

 
 


                
Template Sequence  . . . . . . . . . . . . . CQSAVMSATFAKFHPNLVVGGTYSGQIVLWDNRSNKRTPVQRTPLSA
Template Known Secondary structure  .............
SS
S


BTTBTTTTS
SSS
SSS
S





T
Template Predicted Secondary structure  .............




















Template SS confidence 



























































   305....310.........320.........330.........340.........350.
 
   137..140.........150.........160.........170. .....
Predicted Secondary structure 



























....................




Query SS confidence 


































. . . . . . . . . . . . . . . . . . . .




Query Sequence  DSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVST. . . . . . . . . . . . . . . . . . . . LVRCV
Query Conservation   
 
 
    


 
 

  
 


  

 
  

....................

 

Alig confidence 


































....................




Template Conservation        
       
     
 
 
 
  
  
                           
Template Sequence  AAHTHPVYCVNVVGTQNAHNLISISTDGKICSWSLDMLSHPQDSMELVHKQSKAVAVTSM
Template Known Secondary structure  TS

S





SSS
SSS
SS

SS
S



SSSSS




Template Predicted Secondary structure 


































Template SS confidence 



























































   352.......360.........370.........380.........390.........400.........410.
 
   177..180.........190.........200.........210.........220.........230......
Predicted Secondary structure 






































Query SS confidence 



























































Query Sequence  RSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNS
Query Conservation    
   









 










 

  
  
   
 

 


  
 







Alig confidence 

































....





















Template Conservation                                    ....                      
Template Sequence  SFPVGDVNNFVVGSEEGSVYTACRHGSKAGISEM. . . . FEGHQGPITGIHCHAAVGAVDF
Template Known Secondary structure 

TTT
S


SSS


SSTT
SS

....




S
B




S
SSSS
Template Predicted Secondary structure 












....













Template SS confidence 



























































   412.......420.........430.........440..... ....450.........460.......
 
   237..240.........250.........260.........270.........280.........290......
Predicted Secondary structure 

































Query SS confidence 



























































Query Sequence  DSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGII
Query Conservation 







 












  



 

 

   
 





 

 





 



Alig confidence 






















....
































Template Conservation       
                 ....                           
 

 
Template Sequence  SHLFVTSSFDWTVKLWSTKNNKP. . . . LYSFEDNAGYVYDVMWSPTHPALFACVDGMGRL
Template Known Secondary structure 



BTTS

TT
SS
....




SS




SSSTT

SSS
Template Predicted Secondary structure 











....



















Template SS confidence 



























































   468.470.........480.........490 .........500.........510.........520...
 
   297..300...... ...310.........320.........330.........340.......
Predicted Secondary structure 





..


















Query SS confidence 









. .








































Query Sequence  SVFDCRYPST. . AVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRS
Query Conservation 





 
 
.. 



 



 
 





 




















Alig confidence 









..


















.




















Template Conservation   


               
   
  
  

.

  
 

  

 
 

    
Template Sequence  DLWNLNNDTEVPTASISVEGNPALNRVRWTH. SGREIAVGDSEGQIVIYDVGE
Template Known Secondary structure 
SSS
SSS
SS
SS





T.TSS

SBS


SS
Template Predicted Secondary structure 














.









Template SS confidence 




















































   524.....530.........540.........550.... .....560.........570.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D