Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank14Aligned Residues290
% Identity13%Templatec5cvoA_
PDB info PDB header:hydrolase/protein bindingChain: A: PDB Molecule:wd repeat-containing protein 48; PDBTitle: wdr48:usp46~ubiquitin ternary complex
Resolution3.89 Å
Model Dimensions (Å)X:64.086 Y:54.198 Z:38.181

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   100.........110.... .....120.........130.... .....140.........150...
Predicted Secondary structure 







..







....













Query SS confidence 














. .



















. . . .


















Query Sequence  LPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQT. . . . VEDSDGELQRRTCLVCSEE
Query Conservation 




 








.. 




 










 
....
  
 
 
    


 
 
Alig confidence 














..



















....


















Template Conservation    
   
  
  
     
 


 

 




         
 

  

  
  
  
 
Template Sequence  KYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCN
Template Known Secondary structure 
SBSS
TTTTTTS

SS

S




SS

ST
Template Predicted Secondary structure 





























Template SS confidence 



























































   27..30.........40.........50.........60.........70.........80......
 
   154.....160.........170......... 180.........190.........200
Predicted Secondary structure 























.............









Query SS confidence 

























. . . . . . . . . . . . .




















Query Sequence  QTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . AAVCSSSVVAVCDSRAMVWDV
Query Conservation 
  
 


  

 
  



 

  
.............   









 






Alig confidence 

























.............




















Template Conservation     




 








 

  
 

  
 
 
  



     




 

 
 



Template Sequence  GKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDV
Template Known Secondary structure  T

TTS
TTTT


SS


TTTT
TTS
Template Predicted Secondary structure 
























Template SS confidence 



























































   87..90.........100.........110.........120.........130.........140......
 
   201........210.........220.........230.........240.........250.........260
Predicted Secondary structure 





































Query SS confidence 



























































Query Sequence  KGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGS
Query Conservation 



 

  
  
   
 

 


  
 















 












  
Alig confidence 













..




















.




















.
Template Conservation                ..          
  
  
    .   

  
  
          .
Template Sequence  NTLTALTASNNTVT. . TSSLSGNKDSIYSLAMNQLGT. IIVSGSTEKVLRVWDPRTCAK.
Template Known Secondary structure 
S

SS



..




S

TTS
.
TTSSTTTT.
Template Predicted Secondary structure 








..










.






.
Template SS confidence 



























































   147..150.........160 .........170.........180. ........190.........200..
 
   261........270.........280.........290.........300.........310.........320
Predicted Secondary structure 
































Query SS confidence 



























































Query Sequence  TSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMS
Query Conservation 



 

 

   
 





 

 





 









 
 
 



 



 
 
Alig confidence  ...

















.



















.
















Template Conservation  ...      
   
 

 
  . 
  














 .
 
 
 

  
   
 
Template Sequence  . . . LMKLKGHTDNVKALLLNR. DGTQCLSGSSDGTIRLWSLG. QQRCIATYRVHDEGVWA
Template Known Secondary structure  ...


SS

T.TSSTTSTT.TT

SS
Template Predicted Secondary structure  ...





.







.







Template SS confidence 



























































   203......210.........220 .........230.........240 .........250.......
 
   321........330.........340.........350.........360.........370.. .......
Predicted Secondary structure 

































.

Query SS confidence 



















































.






Query Sequence  LKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSV. EQHVIGV
Query Conservation 




 




















 


 
 

     
  
       . 
     
Alig confidence 




.





























.














.






Template Conservation 
    .    
 


 

 
 
 

        
  .   

  
  
        
  
Template Sequence  LQVND. AFTHVYSGGRDRKIYCTDLRNPDIRVLICE. EKAPVLKMELDRSADPPPAIWVA
Template Known Secondary structure 
T.TS
TT
SS
TT
.
SS


SSSS
S
Template Predicted Secondary structure 

.













.









Template SS confidence 



























































   258.260.. .......270.........280.........290.. .......300.........310.....
 
   380.........390.........400
Predicted Secondary structure 







Query SS confidence 




















Query Sequence  TCGGELTLTGLAQEAMATLAV
Query Conservation     
                 
Alig confidence 




















Template Conservation 
 
 

  
 
          
Template Sequence  TTKSTVNKWTLKGIHNFRASG
Template Known Secondary structure  SSS

TT

Template Predicted Secondary structure 









Template SS confidence 




















   316...320.........330......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in JSmol

Send structure to FirstGlance for more viewing options


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D