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Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank86Aligned Residues242
% Identity14%Templatec3mmyE_
PDB info PDB header:nuclear proteinChain: E: PDB Molecule:mrna export factor; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   90.........100.........110.... .....120.........130... ......140.
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Query Sequence  SGMSKMQWLNLPSTEPLSSVEWCEG. . . . . SLLVGTSRGRIVVADVSPQ. . . TVEDSDGE
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Template Sequence  HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMH
Template Known Secondary structure  S
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   26...30.........40.........50.........60.........70.........80.....
 
   142.......150.........160.........170......... 180.......
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Query Sequence  LQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . . AAVCSSSV
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Template Sequence  TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVM
Template Known Secondary structure  SS

TTSSTTSTTTT
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   86...90.........100.........110.........120.........130.........140.....
 
   188.190.........200.........210.........220.........230.........240.......
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Query Sequence  VAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSG
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Template Sequence  TGSWDKTLKFWDTRSSNP. . . . . . . . . . . MMVLQLPERCYCADVIYP. . . . MAVVATAER
Template Known Secondary structure  TTS
SS
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   146...150.........160... ......170.........180. ........190
 
   248.250.........260......
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Query Sequence  SLVFTDIRTKEGSTSKLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  GLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP
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S
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   191........200.........210.........220.........230.........240.........250
 
   267..270.........280.........290.........300.........310..
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Query Sequence  . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIP
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Template Sequence  AKDNFTFKCHRSNSAPQDIYAVNGIAFHP. VHGTLATVGSDGRFSFWDKD. ARTKLKTSE
Template Known Secondary structure  S
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   251........260.........270......... 280.........290......... 300........
 
   313......320.........330.........340.........
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Query Sequence  SLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLP
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Template Sequence  QLDQPISACCFNH. NGNIFAYASSYDWSKGHEFYNPQ
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SS

T.TSS



STT
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TT
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   313......320..... ....330.........340........
 
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No model constructed - rank, confidence too low




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