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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank32Aligned Residues345
% Identity17%Templatec4nsxA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:u3 small nucleolar rna-associated protein 21; PDBTitle: crystal structure of the utp21 tandem wd domain
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20 .........30.........40.........50.........60.
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Query Sequence  ESIIQVPLYVSTSAWRKE. VQLRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHREN
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Template Sequence  DYLCASTDDNSIFIYKKSDPQDKYPSEFYTKLTVTEIQGGEIVSLQHLATYLNKLTVVTK
Template Known Secondary structure  TTTS
SSTTSSS



TTT
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   126...130.........140.........150.........160.........170.........180.....
 
   62.......70.........80.........90........ .
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Query Sequence  VLAIGLNPLSTSGACVGLLTMESAEAKLSGMSKMQWL. . . . . . . . . . . . . . . . . . . . . . N
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Template Sequence  SN. VLLFNVRTGKLVFTSNEFPDQITTAEPAPVLDIIALGTVTGEVIMFNMRKGKRIRTI
Template Known Secondary structure  S
.TTT





SS

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   186. ..190.........200.........210.........220.........230.........240....
 
   100.........110.... .....120.........130...... ...140.........150.
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Query Sequence  LPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTVE. . . . . DSDGELQRRTCLVCS
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Template Conservation                                                              
Template Sequence  KIPQSRISSLSFRTDGSSHLSVGTSSGDLIFYDLDRRSRIHVLKNIHRESYGGVTQATFL
Template Known Secondary structure 
TT



SSS
TTS
TTTTTTSS
GGGTS
S
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   245....250.........260.........270.........280.........290.........300....
 
   152.......160......... 170.........180.........190.....
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Query Sequence  EEQTPVGDIVVPPSKHAV. . . . . . . . . . . . . . . . STLVRCVRSNAAVCSSSVVAVCDSRA
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Template Conservation                                                    
   
 

 
Template Sequence  NGQPIIVTSGGDNSLKEYVFDPQPPRYLRSRGGHSQPPSYIAFADSQSHFMLSASKDRSL
Template Known Secondary structure  TTSS
SSS







SS


TTS
TTS
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   305....310.........320.........330.........340.........350.........360....
 
   196...200...
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Query Sequence  MVWDVKGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  WSFSLRKDAQSQEMSQRSKFPEIVALAIENARIGEWENIITAHKDEKFARTWDMRNKRVG
Template Known Secondary structure 
STT


B







STTTTTS

TT
STTTT
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   376...380.........390.........400.........410.........420.........430.....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation             
                                                
Template Sequence  RWTFDTTDDGFVKSVAMSQCGNFGFIGSSNGSITIYNMQSGILRKKYKLHKRAVTGISLD
Template Known Secondary structure 
SSS


TTS
TTSTTT



SS

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   452.......460.........470.........480.........490.........500.........510.
 
   204.....210.........220.........230.........240.........250..
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Query Sequence  . . . . . . . . . . . TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFT
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Template Sequence  GMNRKMVSCGLDGIVGFYDFNKSTLLGKLKLDAPITAMVYHRSSD. LFALALDDLSIVVI
Template Known Secondary structure  TTS
TTSSSS


SS
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   512.......520.........530.........540.........550...... ...560.........570
 
   253......260.........270.........280.........290.........300.........310..
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Query Sequence  DIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIP
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Template Sequence  DAVTQRV. . . . VRQLWGHSNRITAFDFSP. EGRWIVSASLDSTIRTWDLP. TGGCIDGII
Template Known Secondary structure  TTTT....


SS

T.TSSTTSTT.TT
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   571...... ..580.........590..... ....600.........610..... ....620....
 
   313......320.........330........ .340.........350.......
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Query Sequence  SLHGDIMSLKYLKLHSDIIATGGVDG. SVVLWNLRSLPTYRVGRAQ
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Template Sequence  . VDNVATNVKFSP. NGDLLATTHVTGNGICIWTNRAQSTRTIDESE
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SS

S.STTSS
SSTT






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   625....630...... ...640.........650.........660........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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