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Job Descriptionexo99____
Confidence95.87%DateMon Feb 25 17:28:45 GMT 2019
Rank345Aligned Residues181
% Identity11%Templatec4mhcA_
PDB info PDB header:structural proteinChain: A: PDB Molecule:nucleoporin nup157; PDBTitle: crystal structure of a nucleoporin
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200.........210.........220.........230. ......
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Query Sequence  SVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQ. . . . . . . . WVPNSD
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Template Sequence  YCWITSDNKLILWNINNSSE. . . . . . . . . . . YHCIDEIEHTILKVKLVKPSPNTFVSSVE
Template Known Secondary structure  TTTTTSS
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   171........180.........190 .........200.........210.........
 
   238.240.........250.........260......... 270....... ..280.........290.
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Query Sequence  SVVLTGSYSGSLVFTDIRTKEGSTSKLSLPAR. . . . . RGCMARCA. DFNTLLPFALATAS
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Template Sequence  NLLIV. ATLFDIYILTISFNDRTHELNIFNTGLKVNVTGFNVSNIISYER. TGQIFFTGA
Template Known Secondary structure  .SS
SSS


TTT
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   220.... .....230.........240.........250.........260........ .270.......
 
   292.......300.........310.........320.........330.........340.....
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Query Sequence  SDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL. . . . . .
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Template Sequence  TD. GVNVWELQYNKIC. LTKSNLEETISQLEVDQ. SRGVLHTLSTKSIVRSYLITSNGLV
Template Known Secondary structure  TS.TT






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ST.TTTTTS
TT
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   278. 280.........290.. .......300......... 310.........320.........330....
 
   346...350.........360.........370 .........380...
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Query Sequence  . . . . . . . . . . . . . . . . RSLPTYRVGRAQYKCPVFDLITTPW. . SVEQHVIGVTCGG
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Template Sequence  GPVLIDAAHIRRGMNALGVKNSPLLSN. RAFKIAKIVSISMCENNDLFLAVITTTG
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GGGST.TT



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   375....380.........390.........400. ........410.........420.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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