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Job Descriptionexo99____
Confidence40.35%DateMon Feb 25 17:28:45 GMT 2019
Rank394Aligned Residues193
% Identity7%Templatec4xmmE_
PDB info PDB header:transport protein/immune systemChain: E: PDB Molecule:nucleoporin nup120; PDBTitle: structure of the yeast coat nucleoporin complex, space group c2
Resolution7.38 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110.........120.........130.........140.........150.........160....
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Query Sequence  PLSSVEWCEGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPP
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Template Sequence  PHFLFYVSPQFSVVFLEDGGLLGLKKVDGVH. . . . . . . . . . YEPLLFNDNSYLKSLTRFF
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   163......170.........180.........190... ......200.........210..
 
   165....170.........180.........190.........200... ......
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Query Sequence  SKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGA. . . . . . . . . . . . . . . TQPVHT
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Template Sequence  SRSSKSDYDSVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRK
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   213......220.........230.........240.........250.........260.........270..
 
   210.........220.........230.........240.........250.........260.........
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Query Sequence  WVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPAR
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Template Sequence  VEAVGEYLSLYNN. . . . . TLVTLLPLENGL. . . . . . . . . FQMGTLLVLTYTFQNNIPTNL
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   273......280..... ....290....... ..300.........310........
 
   270....... ..280.........290.........300.........310.........320...
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Query Sequence  RGCMARCA. . . DFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKY
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Template Sequence  SASAIWSIVDLVLTR. PLELNVEASYLNLIVLWKS. GTASKLQILNVNDESFKNYEW
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   324.....330........ .340.........350....... ..360.........370........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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