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Job Descriptionexo99____
Confidence99.43%DateMon Feb 25 17:28:45 GMT 2019
Rank246Aligned Residues246
% Identity10%Templatec5o51A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:rho guanyl nucleotide exchange factor (rom2), putative; PDBTitle: afrom2 cnh domain
Resolution2.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80... ......90. ........100.........110.... ..
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Query Sequence  VLAIGLNPLSTSGACVGLLTME. SAEAKLSG. . . MSKMQWLNLPSTEPLSSVEWCEG. SL
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Template Sequence  TSANRVNCLVPVDGGRKLVYGTDSGIFISERWPKDKSAKPRRVLDASQVTQIDTLEEYQL
Template Known Secondary structure  BTTB
TTTTSSSS
SSTT



SSGGGT
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   873......880.........890.........900.........910.........920.........930..
 
   117..120.........130.........140.........150.........160.........170......
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Query Sequence  LVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCV
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Template Sequence  LLVLANKTLSSYPM. . EALELAEGQNSVAKRPKKIQGHANFFKAGIGL. . . . . . . . . . . .
Template Known Secondary structure  TTG..GGG
TT

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   933......940...... ...950.........960.........970........
 
   177..180.........190.........200.........210.........220.........230......
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Query Sequence  RSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNS
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Template Sequence  . . . . . GRHLVCSVKTSALSSTIKVYEPTL. . . . . . . . . KPFKEY. YIPAESSSIHFLRST
Template Known Secondary structure  .....SS
SS



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TT
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   979980.........990.........1000.. ...... .1010.........1020...
 
   237..240.........250.........260.........270.........280.........290......
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Query Sequence  DSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGII
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Template Sequence  . . . LCVGC. ARGFEVVSLETTET. . . . QSLLDQADTSLDFVARKE. NVKPIHIERMNGEF
Template Known Secondary structure  ....TTSSS

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   1046...1050 .........1060.... .....1070.........1080.. .......1090......
 
   297..300.........310.........320.........330... ......340.......
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Query Sequence  SVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIAT. . . . . . GGVDGSVVLWNLRS
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Template Sequence  LLNYSD. FSFFVNRNGWRARPDWKISWEG. NPNAFALSYPYILAFEPNFIEIRHIET
Template Known Secondary structure  SS.
SSS
BSSTT


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STTTTTTT
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   1097..1100.. .......1110.........1120.... .....1130.........1140.........1150.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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