Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence98.02%DateMon Feb 25 17:28:45 GMT 2019
Rank304Aligned Residues260
% Identity14%Templatec4pk1A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:chimera protein of outer membrane protein assembly factors PDBTitle: structure of bamb fused to a bama potra domain fragment
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   112.......120.........130 .........140.........150.........160.........170
Predicted Secondary structure 






.
































Query SS confidence 


















.







































Query Sequence  CEGSLLVGTSRGRIVVADV. SPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVS
Query Conservation 


 




 








.

 

  
 
 
    


 
 

  
 


  

 
  
Alig confidence 


















.







































Template Conservation      

     
 
 



 


 

   
           
 

 




  
 
 


Template Sequence  ADNVVYAADRAGLVKALNADDGKEIWSVSLAEPALLSGGVTVSGGHVYIGSEKAQVYALN
Template Known Secondary structure  TT
TTS
TTT








TTTTS
Template Predicted Secondary structure 


























Template SS confidence 



























































   1068.1070.........1080.........1090.........1100.........1110.........1120.......
 
   171........180. ........190.........200...
Predicted Secondary structure 










...........










................
Query SS confidence 










. . . . . . . . . . .





















. . . . . . . . . . . . . . . .
Query Sequence  TLVRCVRSNAA. . . . . . . . . . . VCSSSVVAVCDSRAMVWDVKGA. . . . . . . . . . . . . . . .
Query Conservation 


 

  
  ........... 









 









................
Alig confidence 










...........





















................
Template Conservation 
 

   
     
 
   
 
 

 
 
 
 

 
 


  

   
            
Template Sequence  TSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR
Template Known Secondary structure  TTT


SS
B
S

B

SS

BTTT
TTT





S
S
Template Predicted Secondary structure 

































Template SS confidence 



























































   1136...1140.........1150.........1160.........1170.........1180.........1190.....
 
   204.....210.........220.........230.........240......
Predicted Secondary structure  .................


























Query SS confidence  . . . . . . . . . . . . . . . . .










































Query Sequence  . . . . . . . . . . . . . . . . . TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYS
Query Conservation  .................
 

  
  
   
 

 


  
 















 
Alig confidence  .................
































..







Template Conservation                    
 
       
   
           
     .. 
      
Template Sequence  GESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISSDVDTTPVVVNG. . VVFALAYN
Template Known Secondary structure  S



SSS

TTTTTTT




SSS..SS
Template Predicted Secondary structure 
























..

Template SS confidence 



























































   1196...1200.........1210.........1220.........1230.........1240..... ....1250...
 
   247..250.........260.........270.........280.........290.........300......
Predicted Secondary structure 



































Query SS confidence 



























































Query Sequence  GSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPST
Query Conservation 











  



 

 

   
 





 

 





 









 
 
Alig confidence 











...











.....


.



















.


Template Conservation 
     
   
 ...  
         .....   .    


    
 
 


  .

 
Template Sequence  GNLTALDLRSGQ. . . IMWKRELGSVND. . . . . FIV. DGNRIYLVDQNDRVMALTID. GGV
Template Known Secondary structure  S

TTT

...

S


SS
.....
B
.
TT
TTS
TT.T

Template Predicted Secondary structure 





...





.....
.







.


Template SS confidence 



























































   1265....1270...... ...1280........ .1290. ........1300.........1310. ...
 
   307..310.........320.........330.........340.........350.........360......
Predicted Secondary structure 

































Query SS confidence 



























































Query Sequence  AVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVFDLI
Query Conservation   



 



 
 





 




















 


 
 

     
  
 
Alig confidence 


















..






















....











Template Conservation    
          
 

  .. 
 
 

   
 
  

   
  ....
           
Template Sequence  TLWTQSDLLHRLLTSPVLY. . NGNLVVGDSEGYLHWINVEDGRF. . . . VAQQKVDSSGFQ
Template Known Secondary structure 
TTTTS
B


..TTBTTS
TTT

....

TT
B
Template Predicted Secondary structure 





..










....




Template SS confidence 



























































   1315....1320.........1330... ......1340.........1350...... ...1360........
 
   367..370.........380.........
Predicted Secondary structure 









Query SS confidence 






















Query Sequence  TTPWSVEQHVIGVTCGGELTLTG
Query Conservation         
        
      
Alig confidence 






















Template Conservation    


 

 
 
 
 

 
 


Template Sequence  TEPVAADGKLLIQAKDGTVYSIT
Template Known Secondary structure  S

TTBSS

Template Predicted Secondary structure 






Template SS confidence 






















   13691370.........1380.........1390.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D