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Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank125Aligned Residues238
% Identity12%Templatec6b3xA_
PDB info PDB header:gene regulationChain: A: PDB Molecule:cleavage stimulation factor subunit 1; PDBTitle: crystal structure of cstf-50 in complex with cstf-77
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.... .....120.........130 .........140........
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Query Sequence  QWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADV. . . . . SPQTVEDSDGELQRRTCL
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Template Sequence  TCYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLANHPVIRTLYDHVDEVTCL
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   101........110.........120.........130.........140.........150.........160
 
   149150.........160.........170.........180.
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Query Sequence  VCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAA. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AFHPTEQILASGSRDYTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHP
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   180.........190.........200.........210.........220.........230.........
 
   182.......190.........200........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VCSSSVVAVCDSRAMVWDVKGATQPVH
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Template Sequence  TLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRC. . .
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   240.........250.........260.........270.........280.........290......
 
   209210.........220.........230.........240.........250.........260........
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Query Sequence  TWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPA
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Template Sequence  . . . . . . ITTFEKAHDGAEVCSAIFSKNSK. YILSSGKDSVAKLWEISTGRTLVRYTGAGL
Template Known Secondary structure  ......TTTTTTS

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   297..300.........310......... 320.........330.........340.........
 
   269 270.........280.........290.........300.........310.. .......320.....
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Query Sequence  R. . RGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIP. SLHGDIMSLKYLK
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Template Sequence  SGRQVHRTQAVFNHT. EDYVLLPDERTISLCCWDSR. TAERRNLLSLGHNNIVRCIVHSP
Template Known Secondary structure  SSS







TT.SSTTTTTT.T

B





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   350.........360.... .....370.........380.... .....390.........400.......
 
   326...330.........340......
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Query Sequence  LHSDIIATGGVDGSVVLWNLR
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Template Sequence  . TNPGFMTCSDDFRARFWYRR
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   408.410.........420.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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