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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank77Aligned Residues286
% Identity14%Templatec3ei3B_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-drddb2 complex
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60.........70.........80.
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Query Sequence  QLRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRENVLAIGLNPLSTSGACVGLLT
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Template Sequence  KLHRTASPFDRRVTSLEWHP. . . . . . . . . THPTTVAVGSKGGDIILWDYDV. . . . . . . . .
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   138.140.........150....... ..160.........170.........
 
   82.......90.........100.........110.... .....120.........130......
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Query Sequence  MESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTVE. .
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Template Sequence  . . . . . . . . . QNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVF
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   180.........190.........200.........210.........220.........230
 
   137..140.........150.........160.........170. ........180..
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Query Sequence  . DSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVST. . . . . . . . . . . . . LVRCVRSNAAV
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Template Sequence  AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRC
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   231........240.........250.........260.........270.........280.........290
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  CSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLT
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Template Sequence  DWLMATSSVDATVKLWDLRNIKDKNS. . . . . . . . YIAEMPHEKPVNAAYFNPTDSTKLLT
Template Known Secondary structure  TTTTSGGG

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   291........300.........310...... ...320.........330.........340..
 
   243......250.........260..... ....270.........280.........290 .
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Query Sequence  GSYSGSLVFTDIRTKEGSTSKLS. . LPARRGCMARCADFNTLLPFALATA. . . . . . . . . S
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Template Sequence  TDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP. MYDLIVAGRYPDDQLLLN
Template Known Secondary structure  SSSTTBTTS
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   343......350.........360.........370.........380... ......390.........400.
 
   292.......300.........310.. .......320. ........330.........340......
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Query Sequence  SDGIISVFDCRYPSTAVRTIP. SLHGDIMSL. KYLKLHSDIIATGGVDGSVVLWNLR
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Template Sequence  DKRTIDIYDAN. SGGLVHQLRDPNAAGIISLNKFSP. TGDVLASGM. GFNILIWNRE
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   402.......410.. .......420.........430...... ...440..... ....450.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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