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Job Descriptionexo99____
Confidence97.08%DateMon Feb 25 17:28:45 GMT 2019
Rank320Aligned Residues240
% Identity10%Templatec2bklB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity
Resolution1.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   136...140.........150.........160.........170.........180.........190....
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Query Sequence  EDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSR.
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Template Sequence  RTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD
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   86...90.........100.........110.........120.........130.........140.....
 
   195....200.........210.........220.........230.........240......
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Query Sequence  . . . AMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYS. . . . .
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Template Sequence  EAVLHVIDVDSGEW. . . . . . . . . . . SKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK
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   146...150......... 160.........170.........180.........190....
 
   247..250.........260.........270.........280........ .290.......
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Query Sequence  . . . . . . . GSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALA. . TASSDGIIS
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Template Sequence  VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR. DGKYLFVYILRGWSEND
Template Known Secondary structure  TTTGGGG
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   195....200.........210.........220.........230...... ...240.........250...
 
   298.300.........310.........320.........330... ......340.........350.....
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Query Sequence  VFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIAT. . GGVDGSVVLWNLRSLPTYRVGR
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Template Sequence  VYWKRPGEKDFRLLVKGVGAKYEVHAWK. DRFYVLTDEGAPRQRVFEVDPAKPARASWKE
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   254.....260.........270.........280. ........290.........300.........310..
 
   356...360.........370.........380........
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Query Sequence  AQYKCPVFDLITTPWSVEQHVIGVTCGGELTLT
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Template Sequence  IVPEDSSASLLSVSIVGGHLSLEYLKDATSEVR
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   313......320.........330.........340.....
 
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No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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