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Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank112Aligned Residues352
% Identity12%Templatec4yhcA_
PDB info PDB header:structural proteinChain: A: PDB Molecule:sterol regulatory element-binding protein cleavage- PDBTitle: crystal structure of the wd40 domain of scap from fission yeast
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.... .....50.........60 .........70....
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Query Sequence  LLRNHPSIIAHSDILPPAT. TAKVFSTAQLAAHHRE. . . . . . . . . . NVLAIGLNPLSTSG
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Template Sequence  VPVHHQLDILKIAVSENYKTFASVGLDRSLVVWDLRQWCTKLVLSKEQMPRTLKAIALDP
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   590.........600.........610.........620.........630.........640.........
 
   75....80.........90........ .100.........110. ........120
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Query Sequence  ACVGLLTMESAEAKLSGMSKMQWL. . NLPSTEPLSSVEW. . . . . . . . . . . . CEGSLLVGT
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Template Sequence  QGNYVSLFSKDTLFILNVESPSLMLQHSYHSKPNSKLNVFWMPGTHKDDEWKNFELVVVE
Template Known Secondary structure  TSS
SSTTTT



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   650.........660.........670.........680.........690.........700.........
 
   121........130......... 140.........150.........160.........170..
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Query Sequence  SRGRIVVADVSPQTVEDSD. . . . . . . . GELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTL
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Template Sequence  SSGEIQVFSLTIEIEGADIALVEKFQLSSPIIKSISIVSPTANRIASLTESGEVTVYSKK
Template Known Secondary structure  TTS
SS

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   710.........720.........730.........740.........750.........760.........
 
   173......180. ........190.........200.........210.....
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Query Sequence  VRCVRSNAA. . . . . . . . . . . . . . . . . VCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVD
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Template Sequence  GPVWSPKILSQNKNYLTETKKDIYGIAMADILFLARDSGVDMIDLKND. . . . . . . . . . . E
Template Known Secondary structure  TT



GGGTTS


GGGT
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   770.........780.........790.........800.........810....... .
 
   216...220.........230.........240....... ..250.........260.........270..
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Query Sequence  SSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSG. . . SLVFTDIRTKEGSTSKLSLPARRGC
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Template Sequence  LLHSFTLPPIKVNTFSVGVSNS. RFVNGQFRVSSISFCFTHAVTEKV. . . . LYYYYGNES
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   819820.........830.........840 .........850.........860.... .....870...
 
   273......280.........290.........300.........310.........320.........330.
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Query Sequence  MARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDII.
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Template Sequence  NESYIILNK. WDQQPNLVDVHDPDNSLASL. TFDELQENIHEVEDASESVMSS. DGLYIF
Template Known Secondary structure  TT.SSSS







TTTTS.
GGG


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   874.....880.. .......890.........900.. .......910.........920.... .....930
 
   332.......340.........350.........360... ......370... ......380.
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Query Sequence  . . . . . ATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVF. DLITTPWSVE. . . . QHVIGVTC
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Template Sequence  GMRRKSSSGISGETQVWEVWMYSQSEKKHRSKSLKMYNSLIIADPGPSLAVSDRCVAIVL
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TTTT


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   931........940.........950.........960.........970.........980.........990
 
   382.......390......
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Query Sequence  GGELTLTGLAQEAMA
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Template Sequence  GNYVALVGYGSEIFR
Template Known Secondary structure  TTS
TT

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   1040.........1050....
 
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No model constructed - rank, confidence too low




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