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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank24Aligned Residues273
% Identity19%Templatec1pi6A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:actin interacting protein 1; PDBTitle: yeast actin interacting protein 1 (aip1), orthorhombic crystal form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.........80.........90..... ....100.. .......110... . .
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Query Sequence  LNPLSTSGACVGLLTMESAEAKLSGMSKM. . . . . . QWLNLPS. TEPLSSVEWCE. . G. . S
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Template Sequence  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY
Template Known Secondary structure 



TTTTTT


S

SS
S
TTTTS

SSTT

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   21........30.........40.........50.........60.........70.........80
 
   116...120.........130......... 140.........150.........160 ....
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Query Sequence  LLVGTSRGRIVVADVSPQTVEDSD. . . . . . . . . GELQRRTCLVCSEEQTPVGDI. . VVPP
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Template Sequence  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN
Template Known Secondary structure  TTSTTTT

SS

TTS


SS
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   81........90.........100.........110.........120.........130.........140
 
   165....170.........180.
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Query Sequence  SKHAVSTLVRCVRSNAA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation   
  
                 
                                     
Template Sequence  FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR
Template Known Secondary structure  SSSS

B
B


S
SS

SSSS
BTTTTTB
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   141........150.........160.........170.........180.........190.........200
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation          
                                                   
Template Sequence  THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS
Template Known Secondary structure  SSS
TT
B
STT

TT

TTT




TT



S
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   201........210.........220.........230.........240.........250.........260
 
   182.......190.........200...
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Query Sequence  . . VCSSSVVAVCDSRAMVWDVKGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation          
                                                   
Template Sequence  WLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT
Template Known Secondary structure  SSSSTTTTTTT

TTSGGG
TTTTS
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   261........270.........280.........290.........300.........310.........320
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  LNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN
Template Known Secondary structure  TT


SS
TTTTTTS
TTTT



S

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   321........330.........340.........350.........360.........370.........380
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII
Template Known Secondary structure 
STT

TTSTT
SS

SSSTTSTTT

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   381........390.........400.........410.........420.........430.........440
 
   204.....210.........220.........230......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNS
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Template Conservation                                                    
  
  
 

Template Sequence  KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE
Template Known Secondary structure 
SS

SSTGGGTT
SS

SSS
TTS
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   441........450.........460.........470.........480.........490.........500
 
   237..240.........250.........260.........270.........280. ........290...
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Query Sequence  DSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNT. . . LLPFALATASSD
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Template Conservation   . 

 
  

 
 


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Template Sequence  T. YIAAGDVMGKILLYDLQSRE. . . VKTSRWAFRTSKINAISWKPAEEIEEDLVATGSLD
Template Known Secondary structure  S.TTS
TTTT...

S


SS









TT
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   501 ........510.........520. ........530.........540.........550......
 
   294.....300.........310.........320.........330.........340.....
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Query Sequence  GIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL
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Template Sequence  TNIFIYSVKRPMKIIKALNAHKDGVNNLLWET. PST. LVSSGADACIKRWNV
Template Known Secondary structure  S
SS
TT

SSSSTT
.TT.TTS
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   563......570.........580.........590.... ... ..600.........610..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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