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Job Descriptionexo99____
Confidence99.91%DateMon Feb 25 17:28:45 GMT 2019
Rank162Aligned Residues239
% Identity16%Templatec5jk7C_
PDB info PDB header:viral protein/dna binding proteinChain: C: PDB Molecule:protein vprbp; PDBTitle: the x-ray structure of the ddb1-dcaf1-vpr-ung2 complex
Resolution3.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   101........110.... .....120.........130...... ...140.........150.......
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Query Sequence  PSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVCSEEQTPV
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Template Sequence  EDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLL
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   1091........1100.........1110.........1120.........1130.........1140.........1150
 
   158.160.........170.........180.........190.........200.........210.......
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Query Sequence  GDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSS
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LTSATWSQPLSALWGMKSVFD. . . . . . . . . .
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   1151........1160.........1170.
 
   218.220.........230.........240.........250.........260.........270.......
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Query Sequence  KNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCA
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Template Sequence  . . MKHSFTEDHYVEFSKHSQ. DRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCA
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   1172.......1180......... 1190.........1200.........1210.........1220........
 
   278.280.........290....... ..300......
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Query Sequence  DFNTLLPFALATASSDGIIS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VFDCRYPST
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Template Sequence  TFNP. TDDLVLNDGVLWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLR. TFH
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   12291230.. .......1240.........1250.........1260.........1270.........1280... ...
 
   307..310.........320.........330......... 340.........350.........360..
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Query Sequence  AVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGS. . . . VVLWNLRSLPTYRVGRAQYKCPV
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Template Sequence  LLHTVPALD. . QCRVVFNH. TGTVMYGAMLQSPFGSSFRTFNATDYKP. . IATIDVKRNI
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   1287..1290..... ....1300... ......1310.........1320.........1330. ........1340.
 
   363......370.........380.........390
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Query Sequence  FDLITTPWSVEQHVIGVTCGGELTLTGL
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Template Sequence  FDLCTDT. . KDCYLAVIENQGSMDALNM
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   1355....1360. ........1370.........1380
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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