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Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank81Aligned Residues219
% Identity20%Templatec5ganH_
PDB info PDB header:transcriptionChain: H: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp4; PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
Resolution3.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.... .....120.........130.........140.........150.
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Query Sequence  KMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCS
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Template Sequence  ELAGSQLVSTKPISAVSLSTDDMVVATGSWAGDLQVLNSQTLQPLTQ. . . . . . . . . . . . .
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   166...170.........180.........190.........200.........210..
 
   152.......160.........170.........180.........190.........200.........
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Query Sequence  EEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHT. .
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Template Sequence  . . . . . . . . . . . . . KLDSHVGKIGAIDWHPDSNNQMISCAEDGLIKNFQYSNEEGGLRLLG
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   213......220.........230.........240.........250.........
 
  
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Template Sequence  DLVGHERRISDVKYHPSGKFIGSASHDMTWRLWDASTHQELLLQEGHDKGVFSLSFQCDG
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   260.........270.........280.........290.........300.........310.........
 
   210.........220.........230.........240.........250....
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Query Sequence  . . . . . . . . . . . . . . . WVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDI
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Template Sequence  SLVCSGGMDSLSMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGY. QVATGGGDGIINVWDI
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   320.........330.........340.........350.........360.. .......370........
 
   255....260.........270.........280... ......290.........300.........310..
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Query Sequence  RTKEGSTSKLSLPARRGCMARCADFNTLL. . PFALATASSDGIISVFDCRYPSTAVRTIP
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Template Sequence  RKRDE. . GQLNQILAHRNIVTQVRFSK. EDGGKKLVSCGYDNLINVYSSD. TWLKMGSLA
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   379380... ......390.........400... ......410.........420..... ....430....
 
   313......320.........330.........340....
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Query Sequence  SLHGDIMSLKYLKLHSDIIATGGVDGSVVLWN
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Template Sequence  GHTDKIISLDISN. NSHFLVSGGWDRSIKLWN
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   435....440....... ..450.........460.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Lawrence Kelley, Michael Sternberg 
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