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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank68Aligned Residues361
% Identity12%Templatec6eojD_
PDB info PDB header:rna binding proteinChain: D: PDB Molecule:polyadenylation factor subunit 2,polyadenylation factor PDBTitle: polya polymerase module of the cleavage and polyadenylation factor2 (cpf) from saccharomyces cerevisiae
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40. ........50.........60.
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Query Sequence  SAWRKEVQLRGLLRNHPSIIAHSDILP. . . . . . . . . . . . . PATTAKVFSTAQLAAHHREN
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Template Sequence  RSVDVSSPYINLYYNRRHGLPNLVVEPETSYTIDIMPPNAYRGRDRVINLPSKFTHLSSN
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SSGGGGGG


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   31........40.........50.........60.........70.........80.........90
 
   62.......70.........80... ......90........ .100.........110.... ..
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Query Sequence  VLAIGLNPLSTSGACVGLLTME. SAEAKLSGMSKMQWL. . NLPSTEPLSSVEWCEG. . SL
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Template Sequence  KVKHVIPAIQWTPEGRRLVVATYSGEFSLWNASSFTFETLMQAHDSAVTTMKYSHDSDWM
Template Known Secondary structure  SS






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   91........100.........110.........120.........130.........140.........150
 
   117..120.........130...... ...140.........150.........160.........170....
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Query Sequence  LVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVR.
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Template Sequence  ISGDADGMIKIWQPNFSMVKEIDAAHTESIRDMAFSSNDSKFVTCSDDNILKIWNFSNGK
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   151........160.........170.........180.........190.........200.........210
 
   175....180.........190.........200.........210.........220.........230...
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Query Sequence  . CVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWV
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Template Sequence  QERVLSGHHWDVKSCDWHPEMGLIASASKDNLVKLWDPRSGNCISSILKFKHTVLKTRFQ
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   211........220.........230.........240.........250.........260.........270
 
   234.....240.........250.........260.........270.........280.........290...
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Query Sequence  PNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSD
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Template Sequence  PTKGNLLMAISKDKSCRVFDIRYSM. . . KELMCVRDETDYMTLEWHPI. NESMFTLACYD
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   271........280.........290..... ....300.........310..... ....320......
 
   294.....300..... ....310.........320.........330.........340.........350.
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Query Sequence  GIISVFDCRYPS. . TAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTY
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Template Sequence  GSLKHFDLLQNLNEPILTIPYAHDKCITSLSYNP. VGHIFATAAKDRTIRFWTRARPIDP
Template Known Secondary structure  TTTBSSS
STTSSSS

T.TSSTTS


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   327..330.........340.........350.........360 .........370.........380.....
 
   352.......360.........370.........380...
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Query Sequence  RVGRAQYKCPVFDLITTPWSVEQHVIGVTCGG
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Template Sequence  NAYPTYNNKKINGWFFGI. . NND. INAXXXXX
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   386...390.........400... ... ...410....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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