Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.91%DateMon Feb 25 17:28:45 GMT 2019
Rank166Aligned Residues258
% Identity12%Templatec3fhcA_
PDB info PDB header:transport protein/hydrolaseChain: A: PDB Molecule:nuclear pore complex protein nup214; PDBTitle: crystal structure of human dbp5 in complex with nup214
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.... .....120.........130.........140.........150.
Predicted Secondary structure 







......



















Query SS confidence 
















. . . . . .




































Query Sequence  LNLPSTEPLSSVEWCEG. . . . . . SLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCS
Query Conservation 






 








...... 




 










 

  
 
 
    


 
Alig confidence 
















......




















................
Template Conservation          
  



 

  
     
   
  
  

      ................
Template Sequence  LLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSN. . . . . . . . . . . . . . . .
Template Known Secondary structure 

SS

TTS
TTTGGGGGS................
Template Predicted Secondary structure 




















................
Template SS confidence 



























































   87..90.........100.........110.........120.........130
 
   152.......160.........170.........180.........190.........200.........210.
Predicted Secondary structure 














































Query SS confidence 



























































Query Sequence  EEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWV
Query Conservation   

  
 


  

 
  



 

  
   









 










 

  
 
Alig confidence  ..

















































........
Template Conservation  ..                   
             
    
  
   
    ........
Template Sequence  . . EAQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET. . . . . . . .
Template Known Secondary structure  ..





SSSGGG

SS
TTTTS
SSS........
Template Predicted Secondary structure  ..

























........
Template SS confidence 



























































   131........140.........150.........160.........170.........180
 
   212.......220.........230.........240.........250......... 260.........
Predicted Secondary structure 

























..









Query SS confidence 















































. .









Query Sequence  PSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEG. . STSKLSLPAR
Query Conservation   
   
 

 


  
 















 












 .. 



 

 
Alig confidence  ...






















.




















..









Template Conservation  ...            
     
  
 . 
  
  

 
               
      
Template Sequence  . . . VKVCATLPSTVAVTSVCWSPKGK. QLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESD
Template Known Secondary structure  ...
GGG

TTSS.STTS

TT




TTS
TT
Template Predicted Secondary structure  ...










.















Template SS confidence 



























































   183......190.........200..... ....210.........220.........230........
 
   270.........280.........290.........300.
Predicted Secondary structure 













............................
Query SS confidence 































. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  RGCMARCADFNTLLPFALATASSDGIISVFDC. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 
   
 





 

 





 








............................
Alig confidence 











.


















............................
Template Conservation      
  
    .                                               
Template Sequence  HPVRVLDVLWIG. TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGS
Template Known Secondary structure  S
.TTTT

SSS



SS
TT





SS
B
Template Predicted Secondary structure 



.





















Template SS confidence 



























































   239240.........250 .........260.........270.........280.........290.......
 
   302.......310.........320.........330.........340.........350........
Predicted Secondary structure  ...


































Query SS confidence  . . .
























































Query Sequence  . . . RYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQY
Query Conservation  ...
 
 
 



 



 
 





 




















 


 
 

  
Alig confidence  ...























.































Template Conservation              
      
     
 .
  



 
 
    

   
  
  


   
Template Sequence  CTERQHHYYLSYIEEWDLVLAASAAST. EVSILARQSDQINWESWLLEDSSRAELPVTDK
Template Known Secondary structure 
SSS


TTTTTTBS.B
TTSS


GGG

B

B
TT
Template Predicted Secondary structure 









.














Template SS confidence 



























































   298.300.........310.........320.... .....330.........340.........350......
 
   359360........ .370.........380.......
Predicted Secondary structure 




.








Query SS confidence 









.


















Query Sequence  KCPVFDLITT. PWSVEQHVIGVTCGGELTL
Query Conservation     
  
   .     
        
    
Alig confidence 









.


















Template Conservation        

 
 
 
  
 
     

 
  
Template Sequence  SDDSLPMGVVVDYTNAPVLMLLSTDGVLCP
Template Known Secondary structure  S
B






TTS
Template Predicted Secondary structure 











Template SS confidence 





























   357..360.........370.........380......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D