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Job Descriptionexo99____
Confidence99.74%DateMon Feb 25 17:28:45 GMT 2019
Rank213Aligned Residues226
% Identity13%Templatec3eweC_
PDB info PDB header:protein transport,structural proteinChain: C: PDB Molecule:nucleoporin seh1; PDBTitle: crystal structure of the nup85/seh1 complex
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LSSVEWCEG. . SLLVGTSRGRIVVADVSPQT. . . . . VEDSDGELQRRTCLVCSEEQTPVG
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Template Sequence  VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI
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   12.......20.........30.........40.........50.........60.........70.
 
   159160.........170......... 180.........190.........200...
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Query Sequence  DIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . . . AAVCSSSVVAVCDSRAMVWDVKGA
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Template Sequence  IASASYDKTVKLWEEWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP
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   72.......80.........90.........100.........110.........120.........130.
 
   204.....210.........220.........230.........240.........250.........260...
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Query Sequence  TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSK
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Template Sequence  SDLRSWT. . . . . . . . LTSEMKVSDFCLSWCPSPE. KLAVSALEQAIIYQRLHV. . . . . . .
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   143...... 150.........160........ .170.........180......
 
   264.....270.........280.........290.........300.........310.........320...
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Query Sequence  LSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKY
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Template Sequence  AAKLPGHKSLIRSISWAP. SYQLIATGCKDGRIRIFKIT. ENLQVELLSGE. . . VWSVSW
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   205....210.........220.. .......230.........240.. .......250... ......
 
   324.....330.........340.........350...
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Query Sequence  LKLHSDIIATGGVDGSVVLWNLRSLPTYRV
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Template Sequence  NL. TGTILSSAGDDGKVRLWKATYSNEFKC
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   313. .....320.........330.........340.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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