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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank26Aligned Residues253
% Identity15%Templatec5n4aA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:intraflagellar transport protein 80; PDBTitle: crystal structure of chlamydomonas ift80
Resolution1.79 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  WLNLPSTEPLSSVEWCEGS. LLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQT
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Template Sequence  RLKVKQSELTAAVGWNVWNELFTCSDDQTIHKWNMLGEPEQKVSTLDAYFTDMHWYPVSS
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   2.......10.........20.........30.........40.........50.........60.
 
   156...160.........170.........180.........190.........200.........210.....
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Query Sequence  PVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVD
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Template Sequence  KKTQAGGTD. . . . . . . . . . . . . . . . . . . . VFAVACTDGSVKILSRTG. . . . . . . . . . . . R
Template Known Secondary structure  GGG

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   68.70...... ...80.........90.... .
 
   216...220.........230.........240.........250.........260..
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Query Sequence  SSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTS. . . . . . . . . . . . .
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Template Sequence  VEKSIEGHKGACISLRWSYDGT. ALATAGEDGSVKIWSRNGMLRSTLAQADSPVYSIVWA
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   96...100.........110....... ..120.........130.........140.........150....
 
   263......270.........280.........290.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . KLSLPARRGCMARCADFNTLLPFALATASSDGIISVF
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Template Sequence  YDCDQLCYCTGSNVVIKSLSSNAKQNAWKAHDGVVLKVDWSP. INHLIITGGEDCKYKVW
Template Known Secondary structure  TTSSTTSS

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   155....160.........170.........180.........190...... ...200.........210...
 
   300.........310.........320.........330.........340.........350.........
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Query Sequence  DCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQYK
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Template Sequence  DS. . FGRLLFQSGLFDYPVTSVAWAP. SGELFAVGGFN. TLQLCDRMGWAYSKIHLN. DT
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   214. ....220.........230....... ..240........ .250.........260...... ..
 
   360.........370.........380.........390
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Query Sequence  CPVFDLITTPWSVEQHVIGVTCGGELTLTGL
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Template Sequence  GSIMTLSWTA. . DSTQLAGGGGSGGVVFGQV
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   269270........ .280.........290.......
 
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No model constructed - rank, confidence too low




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