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Job Descriptionexo99____
Confidence99.96%DateMon Feb 25 17:28:45 GMT 2019
Rank52Aligned Residues223
% Identity11%Templatec3lrvA_
PDB info PDB header:splicingChain: A: PDB Molecule:pre-mrna-splicing factor 19; PDBTitle: the prp19 wd40 domain contains a conserved protein interaction region2 essential for its function.
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   116...120.........130...... ...140.........150.........160.........170
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Query Sequence  LLVGTSRGRIVVADVSPQTVE. . . . . DSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVS
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Template Sequence  CMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRL. . . . . . . . . . . . .
Template Known Secondary structure  TTSSSS



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   211........220.........230.........240.........250.......
 
   171........180.........190.........200.........210.........220.........230
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Query Sequence  TLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFA
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Template Sequence  . . . . . . . . . . . . . . . . LLLYPGNQITILDSKTN. . . . . . . . . . . KVLREIEVDSANEIIY
Template Known Secondary structure  ................TTTTTT
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   258.260.........270.... .....280.........290
 
   231........240.........250.........260.........270.........280.........290
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Query Sequence  QWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATA
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Template Sequence  MYGHNTE. YFIWADNRGTIGFQSYEDDS. . . QYIVHSAKSDVEYSSGVLHK. DSLLLALY
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   291...... ..300.........310....... ..320.........330....... ..340.....
 
   291........300.........310. ........320.........330.........340........
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Query Sequence  SSDGIISVFDCRYPSTAVRTI. . PSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSL
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Template Sequence  SPDGILDVYNLS. SPDQASSRFPVDEEAKIKEVKFAD. NGYWMVVEC. DQTVVCFDLRKD
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TTS
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   349350.........360 .........370.........380.... .....390... ......400.....
 
   349350.........360.........370.........380.........
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Query Sequence  PTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTLTG
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Template Sequence  VGTLAYPT. YTIGTVTYDIDD. . SGKNMIAYSNESNSLTIY
Template Known Secondary structure  TT
BSS

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B



T..TSSTTTT
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   406...410... ......420..... ....430.........440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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