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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank21Aligned Residues254
% Identity17%Templatec4wjuB_
PDB info PDB header:biosynthetic proteinChain: B: PDB Molecule:ribosome assembly protein 4; PDBTitle: crystal structure of rsa4 from saccharomyces cerevisiae
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   83......90.........100.........110.... .....120.........130...... ..
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Query Sequence  ESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTVE. DS
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Template Sequence  PRAVFKVKPVTRSSSAIAGHGSTILCSAFAPHTSSRMVTGAGDNTARIWDCDTQTPMHTL
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   123......130.........140.........150.........160.........170.........180..
 
   139140.........150.........160.........170.........180..
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Query Sequence  DGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAV. . . . . . . . . . . . . . . .
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Template Sequence  KGHYNWVLCVSWSPDGEVIATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLSWEPIHL
Template Known Secondary structure 


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B


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   183......190.........200.........210.........220.........230.........240..
 
   183......190.........200...
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Query Sequence  . . . . . CSSSVVAVCDSRAMVWDVKGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGSKPRLASSSKDGTIKIWDTVSRVCQYTMSGHTNSVSCVKWGGQGLLYSGSHDRTVR
Template Known Secondary structure  S
TTS


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   243......250.........260.........270.........280.........290.........300..
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  VWDINSQGRCINILKSHAHWVNHLSLSTDYALRIGAFDHTGKKPSTPEEAQKKALENYEK
Template Known Secondary structure  GGGTT


SS
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   303......310.........320.........330.........340.........350.........360..
 
   204.....210.........220.........230.........240....
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Query Sequence  . . . . . . . . . . . . . . . . . . . TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGS
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Template Conservation                                                       .      
Template Sequence  ICKKNGNSEEMMVTASDDYTMFLWNPLKSTKPIARMTGHQKLVNHVAFSPDGR. YIVSAS
Template Known Secondary structure  B
SSSB


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   363......370.........380.........390.........400.........410..... ....420.
 
   245....250.........260.........270.........280.........290.........300....
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Query Sequence  YSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYP
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Template Sequence  FDNSIKLWDGRDGKF. . . . ISTFRGHVASVYQVAWSS. DCRLLVSCSKDTTLKVWDVR. T
Template Known Secondary structure  TTS
TTT

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SS

T.TSSTTSTT.T
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   422.......430...... ...440.........450.... .....460.........470.... .
 
   305....310.........320.........330.........340....
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Query Sequence  STAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWN
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Template Sequence  RKLSVDLPGHKDEVYTVDWSV. DGKRVCSGGKDKMVRLWT
Template Known Secondary structure  T

SS

T.TS
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   476...480.........490...... ...500.........510....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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