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Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank115Aligned Residues271
% Identity14%Templatec4i79B_
PDB info PDB header:cell cycleChain: B: PDB Molecule:nucleoporin nup43; PDBTitle: crystal structure of human nup43
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   103......110... ......120.. .......130.... .....140.......
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Query Sequence  TEPLSSVEWCE. . . . . . . . . GSLLVGTSR. . . GRIVVADVSPQT. . . VEDSDGELQRRTC
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Template Sequence  SQKISKTRWRPLPPGSLQTAETFATGSWDNEENYISLWSIGDEGDHQLLCDIRHHGDVMD
Template Known Secondary structure  SS




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   10.........20.........30.........40.........50.........60.........
 
   148.150.........160.........170.........180.. .......
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Query Sequence  LVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAV. . . . . . . . . . . . . . . . . . CSSSVVA
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Template Sequence  LQFFDQERIVAASSTGCVTVFLHHPNNQTLSVNQQWTTAHYHSSAPCTGVVCNNPEIVTV
Template Known Secondary structure  SSSSTTS
TTTTTTSSB

B

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   80.........90.........100.........110.........120.........130.........
 
   190.........200.........210.........220.........230.........240.........
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Query Sequence  VCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSL
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Template Sequence  GEDGRINLFRADHKE. . . . . . . . . . AVRTIDNADSSTLHAVTFLRTP. . EILTVNSIGQL
Template Known Secondary structure  TT

TT
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   148.150.........160.. .......170.........180.... .....190.....
 
   250.........260.........270.........280.........290.........300.........
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Query Sequence  VFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVR
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Template Conservation                                                              
Template Sequence  KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVS
Template Known Secondary structure  TT
SSSS
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SS
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   196...200.........210.........220.........230.........240.........250.....
 
   310.........320.........330.........340.........350.........360.........
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Query Sequence  TIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTP
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Template Sequence  LLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASSWLSIEITSLLPSRSLSVNTLDV
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   256...260.........270.........280.........290.........300.........310.....
 
   370.........380.......
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Query Sequence  WSVEQHVIGVTCGGELTL
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Template Sequence  . . LGPCLVCGTDAEAIYV
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   359360.........370....
 
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No model constructed - rank, confidence too low




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