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Job Descriptionexo99____
Confidence99.83%DateMon Feb 25 17:28:45 GMT 2019
Rank201Aligned Residues191
% Identity14%Templatec5a9qY_
PDB info PDB header:transport proteinChain: Y: PDB Molecule:nucleoporin seh1; PDBTitle: human nuclear pore complex
Resolution23.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.... .....120.........130.... .....140.........
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Query Sequence  QWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQT. . . . VEDSDGELQRRTCLV
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Template Sequence  RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVT
Template Known Secondary structure 

B

BB
B
T

BB

TTB

BBSS
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   5....10.........20.........30.........40.........50.........60....
 
   150.........160.........170.........180.........190.........200.........
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Query Sequence  CSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHT
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Template Sequence  WAHPEFG. . . . . . . . . . . . . . . . . . . . . . . . . . . QVLASCSFDRTAAVWEEIVGESNDKL
Template Known Secondary structure  B
GGGSS...........................S

SSS


SS
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   65....70. ........80.........90.......
 
   210.. .......220.........230........ .240.........250.........260......
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Query Sequence  WVP. SVDSSKNSPNEQEPLLFAQWVPNSDS. VVLTGSYSGSLVFTDIRTKEGSTSKLSL.
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Template Sequence  RGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQH
Template Known Secondary structure 
TTTTS



SSBTBTTT
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   98.100.........110.........120.........130.........140.........150.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMT
Template Known Secondary structure 

STT


TTTBT

SBSB

BBTTTT


BT
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   158.160.........170.........180.........190.........200.........210.......
 
   267..270
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARR
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Template Sequence  VTDPVHDIAFAPNLGRSFHILAIATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNH
Template Known Secondary structure  B





BB
BTB

SBBBTTTTT
BBBBBBTTBT
S


TTSBTTS
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   218.220.........230.........240.........250.........260.........270.......
 
   271........280.........290.........300.. .......310....
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Query Sequence  GCMARCADFNTLLPFALATASSDGIISVFDCR. . YPSTAVRTIPSL
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Template Sequence  NSQVWRVSWNI. TGTVLASSGDDGCVRLWKANYMDNWKCTGILKGN
Template Known Secondary structure 
SBBBSB
S.
BTBB
SGGG

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   278.280........ .290.........300.........310.........320..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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