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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank19Aligned Residues371
% Identity8%Templatec5n1aB_
PDB info PDB header:translationChain: B: PDB Molecule:utp4; PDBTitle: crystal structure of utp4 from chaetomium thermophilum
Resolution2.15 Å
Model Dimensions (Å)X:63.450 Y:90.498 Z:55.073

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NESIIQVPLYVSTSAWRKEVQ. . . . . LRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAA
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Template Sequence  NRKLVAGTVDGNLVLYSIEDGDLKFQKTLTRTSKKTKFVSIAFQSHNIVIVGCSNSTICA
Template Known Secondary structure  S
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Query Sequence  HHRENVLAIG. . . . . . . . . . LNPLSTSGACVGLLTMESAEAKLSGMS. . KMQWLNLPSTE
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Template Sequence  YDVRTGTXLRQXTLGSKNIIVWAVKCLPNGDIVSGDSTGQVCIWDGKTYTQAQRIQSHTQ
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Query Sequence  PLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. . . . . . . . DSDGELQRRTCLVCSEEQ
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Template Sequence  DVLCLSVSADGSKIISGGXDRRTAVYEPXAGQSGRWSKVFHRRYHQHDVKAXASFEGKGX
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   278.280.........290.........300.........310.........320.........330.......
 
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Query Sequence  TPVGDIVVPPSKHAVSTLVRCVRSNAAVC. . . . . . . . . . . . . SSSVVAVCDSRAMVWDVK
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Template Sequence  SVVVSGGSDASPIVLPLRALGKEFHRTLPHLPQHPTVLSAPKARYILSWWENEIRIWHLL
Template Known Secondary structure  TT


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   338.340.........350.........360.........370.........380.........390.......
 
   202.......210.........220.........230.........240.........250.........260.
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Query Sequence  GATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGST
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Template Sequence  NNRKFL. . . . . . . . . AQVLIKGASHITSASISEDGT. LLAAST. PTDVKVFHLDPAAAQR
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Query Sequence  SKLS. . . . . LPARRGCMARCADFNTLLPFALATASSDGIISVFDC. . . . . . . . . . . . . . .
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Template Sequence  NGQLYIKKVNXTGTGLGATRVQISP. DKRWICWAEEGSKVXISRVHATESADGISYTVSV
Template Known Secondary structure  TSS




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   464.....470.........480........ .490.........500.........510.........520..
 
   302.......310.........320.........330.........340.........350.
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Query Sequence  . . . . . . . . . . RYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTY
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Template Sequence  PHKLHRLRRQIPKHILLGGLGSYDRNVSQIAFSA. DSRXLSVADLAGYIDTWVLRGPGER
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TSTTTTGGG

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Query Sequence  RVG. . . . . . RAQYKCPVFDLITTPWSVEQ. . . HVIGVTCGGEL
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Template Sequence  WARNPKAAXIPKLSAAPVVLSFSPTPRDDGDYDLLVVTTLKQL
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TTGGGS


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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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