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Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank90Aligned Residues227
% Identity14%Templatec5wjcA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:kinetochore protein mis16; PDBTitle: crystal structure of schizosaccharomyces pombe mis16 in complex with2 eic1
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   99100.........110.... .....120.........130.........140.........150.....
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Query Sequence  NLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQT
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Template Sequence  KIPHDGDVNRARYMPQKPEIIATMGEGGNAYIFDTTC. . . . . . . . . . . . . . . . . . . HDAL
Template Known Secondary structure  SS


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GGG...................S
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   127..130.........140.........150.........160... ....
 
   156...160.........170.........180.........190.........200.........210.....
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Query Sequence  PVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVD
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Template Sequence  TTGEALPQAVLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQTQSFTSSET. KVIS
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SS


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   168.170.........180.........190.........200.........210.........220.. ....
 
   216...220.........230.........240.........250.........260......
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Query Sequence  SSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . . . . . . .
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Template Sequence  PIAKYHRHTDIVNDVQFHPQHEALLASVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINA
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   227..230.........240.........250.........260.........270.........280......
 
   267..270.........280.........290..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFALATASS
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Template Sequence  VAINPFNDYLLATASADKTVALWDLRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSST
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SSSTTTTSTTSTTS
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   287..290.........300.........310.........320.........330.........340......
 
   293......300..... ....310.........320.........330.........
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Query Sequence  DGIISVFDCRYPS. . . . . . . . . . . . . TAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGS
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Template Sequence  DRRVCIWDLEKIGEEQTPEDAEDGSPELLFMHGGHTNRISEFSWCPNERWVVGSLADDNI
Template Known Secondary structure  TS
GGGTT



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   347..350.........360.........370.........380.........390.........400......
 
   340.....
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Query Sequence  VVLWNL
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Template Sequence  LQIWSP
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   407..410..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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