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Job Descriptionexo99____
Confidence99.06%DateMon Feb 25 17:28:45 GMT 2019
Rank272Aligned Residues299
% Identity10%Templatec4hdjA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:outer membrane protein assembly factor bamb; PDBTitle: crystal structure of bamb from pseudomonas aeruginosa
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50... ......60.........70.... .....80.........90......
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Query Sequence  PPATTAKVFSTAQ. LAAHHRENVLAIGLNPLSTSG. . . ACVGLLTMESAEAKLSGMSKMQ
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Template Sequence  PPAELTDFKEEVVLSKQWSRSVGDGQGDLYNLLEPAVDGSTIYAASAEGRVMAIQRETGD
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TTTTTT
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TT
TTSTTT

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   28.30.........40.........50.........60.........70.........80.......
 
   97..100 .........110.........120.........130.........140.........150....
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Query Sequence  WLNL. . PSTEPLSSVEWCEGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQ
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Template Sequence  VLWKKDLERPVSGGVGVGYGLVLVGTLRGDVIALDEATGKKKWTKRVNSEVLSAPATN. G
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S
TTTTSTTT


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   88.90.........100.........110.........120.........130.........140..... .
 
   155....160.........170.........180. ........190........
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Query Sequence  TPVGDIVVPPSKHAVSTLVRCVRSNAA. . . . . . . . . . . . . . . . VCSSSVVAVCDSRAMVW
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Template Conservation                     
                                        
Template Sequence  DVVVVQTQDDKLIGLDAASGDQRWIYESTVPVLTLRGTGAPLIAGNMALAGLASGKVVAV
Template Known Secondary structure  S
TTSTTT






TT




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TTS
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   147..150.........160.........170.........180.........190.........200......
 
   199200.........210.........220.........230.........240.........250........
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Query Sequence  DVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKE
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Template Sequence  DVQRGLPIWEQRVAIPQGRSELDRVVDIDGGLLLSGDT. . . LYVVSYQGRAAALDVNSGR
Template Known Secondary structure  TTT


S



SS
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STTTTT

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   207..210.........220.........230.........240.... .....250.........260...
 
   259260....... ..270.........280.....
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Query Sequence  GSTSKLSLP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ARRGCMARCADFNTLLPF
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Template Conservation                                                          . 
 
Template Sequence  LLWQREASSYVGVAEGFGNIYVSQASGSVEGLDSRGASSLWNNDALARRQLSAPAV. FSS
Template Known Secondary structure  S


STTTTTTTS
S
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   264.....270.........280.........290.........300.........310......... 320..
 
   286...290.........300.........310.........320.........330.........340.....
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Query Sequence  ALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL
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Template Sequence  NVVVGDLEGYVHLLSQV. DGRFVGRERVDSDGVRVRPLVV. . GSWMYVFGNGGKLVAYTI
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TTSTT.T



TT


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   323......330......... 340.........350.........360. ........370.........
 
   346.
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Query Sequence  RS
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Alig confidence 

Template Conservation    
Template Sequence  RP
Template Known Secondary structure  TT
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   380.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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