Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.47%DateMon Feb 25 17:28:45 GMT 2019
Rank244Aligned Residues297
% Identity12%Templatec3vh0C_
PDB info PDB header:protein binding/dnaChain: C: PDB Molecule:uncharacterized protein ynce; PDBTitle: crystal structure of e. coli ynce complexed with dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.... .....120... ......130.........140......
Predicted Secondary structure 







..


.......















Query SS confidence 


















. .








. . . . . . .






















Query Sequence  QWLNLPSTEPLSSVEWCEG. . SLLVGTSRG. . . . . . . RIVVADVSPQTVEDSDGELQRRT
Query Conservation 








 








.. 




 

.......








 

  
 
 
    
Alig confidence 


















..








.......






















Template Conservation     
   
 
    
 



  
 
             
   
  
      
     
 
Template Sequence  EMLRKAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF
Template Known Secondary structure 
SSTTTT


TTT
SS
TTT

SS


Template Predicted Secondary structure 
































Template SS confidence 



























































   33......40.........50.........60.........70.........80.........90..
 
   147..150.........160.. .......170....... ..180.........190..
Predicted Secondary structure 









.














.............









Query SS confidence 















.














. . . . . . . . . . . . .














Query Sequence  CLVCSEEQTPVGDIVV. PPSKHAVSTLVRCVR. . . . . . . . . . . . . SNAAVCSSSVVAVCD
Query Conservation 


 
 

  
 


 . 

 
  



 

 ............. 
   









Alig confidence 















.














.............














Template Conservation   

 



  
 
       
   
                                   
Template Sequence  GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDAT
Template Known Secondary structure  TTTTGGGTTTT

S





SS



TTT
Template Predicted Secondary structure 



























Template SS confidence 



























































   93......100.........110.........120.........130.........140.........150..
 
   193......200.........210.........220.........230.........240.........250..
Predicted Secondary structure 
































Query SS confidence 



























































Query Sequence  SRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFT
Query Conservation   










 

  
  
   
 

 


  
 















 






Alig confidence 












































.













Template Conservation                                               .              
Template Sequence  NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK. RLYTTNADGELITI
Template Known Secondary structure  TSSS
TTTT



TT



TTTT.
TTSB
Template Predicted Secondary structure 


















.



Template SS confidence 



























































   153......160.........170.........180.........190....... ..200.........210.
 
   253......260.........270.........280.........290.........300.........310..
Predicted Secondary structure 


































Query SS confidence 



























































Query Sequence  DIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIP
Query Conservation 





  



 

 

   
 





 

 





 









 
 
 



 
Alig confidence 

















































.








Template Conservation                                                    .         
Template Sequence  DTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR. NGNILAKVA
Template Known Secondary structure  TTTT

B


SSS





GGGT

TTSSTT.T

Template Predicted Secondary structure 























.


Template SS confidence 



























































   212.......220.........230.........240.........250.........260. ........270
 
   313......320.........330.........340.........350.........360.........370..
Predicted Secondary structure 






































Query SS confidence 



























































Query Sequence  SLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSV
Query Conservation 



 
 





 




















 


 
 

     
  
       
Alig confidence 


..
































..
















..
Template Conservation     ..              
       
 
 
  
   ..   
     
  

 

..
Template Sequence  APE. . SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV. . VKTFDTPTHPNSLALSA. . D
Template Known Secondary structure 
S
..


GGGTTTTTTTTT..

S
T..T
Template Predicted Secondary structure  ..












..






..
Template SS confidence 



























































   271.. ......280.........290.........300...... ...310.........320... .
 
   373... ...380.........390.........400
Predicted Secondary structure 

.







Query SS confidence 



.























Query Sequence  EQHV. IGVTCGGELTLTGLAQEAMATLAV
Query Conservation   
  .      
                 
Alig confidence 



.























Template Conservation 
  
 
                 
  
 
Template Sequence  GKTLYVSVKQKSTKQQEATQPDDVIRIAL
Template Known Secondary structure  SS



SSS

SS

Template Predicted Secondary structure 














Template SS confidence 




























   325....330.........340.........350...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D