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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank62Aligned Residues235
% Identity14%Templatec4u7aA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:ribosome biogenesis protein erb1; PDBTitle: the carboxy-terminal domain of erb1 is a seven-bladed beta-propeller2 that binds rna.
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   83......90.........100.........110.... .....120.........130.........140
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Query Sequence  ESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVEDSDG
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Template Sequence  PSPKDLRPFPIRCSTIYAGHKGKVRTLSIDPSGLWLATGSDDGTVRVWEILT. . . . . . . .
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GGGG







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   417..420.........430.........440.........450.........460........
 
   141........150.........160.........170.........180.........190.........200
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Query Sequence  ELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDV
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Template Sequence  . . . . . . . . . . . . . GREVYRTTLIDDEENPDYHIECIEWNPDANNGILAVAVGENIHLIVP
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S
TT
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   469470.........480.........490.........500.........510.....
 
   201..
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Query Sequence  KGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PIFGYDIENNGKTKIEDGFQVAQWNKPSQKQLEKDICITISCKKTVKKLSWHRKGDYFVT
Template Known Secondary structure  TTS
T





TTTSS



TTSS
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   516...520.........530.........540.........550.........560.........570.....
 
   204.....210.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TQPVHTWVPSVD
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Template Sequence  VQPDSGNTSVLIHQVSKHLTQSPFKKSKGIIMDAKFHPFKPQLFVCSQRYVRIYDLSQQI
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TT
GGGSGGGT


SS

S

SSSSSS
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   612.......620.........630.........640.........650.........660.........670.
 
   216...220.........230.........240.........250.........260.........270.....
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Query Sequence  SSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMAR
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Template Sequence  LVKKLLPGARWLSKIDIHPRGD. NLIASSFDKRVLWHDLDLAS. . . TPYKTLRYHEKAVR
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TTSS.TTS
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   672.......680.........690... ......700.........710... ......720.......
 
   276...280.........290.........300..... ....310....... ..320...
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Query Sequence  CADFNTLLPFALATASSDGIISVFDCRYPS. . . . . . . . TAVRTIPSLHGD. . . . IMSLKY
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Template Sequence  SVNFHK. KLPLFSSAADDGTIHVFHATVYDDMMKNPMIVPLKKLTGHKVINSLGVLDAIW
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S.SSSTTS


SSSS







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   728.730... ......740.........750.........760.........770.........780......
 
   324.....330.........340....
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Query Sequence  LKLHSDIIATGGVDGSVVLWN
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Template Sequence  HP. REAWLFSAGADNTARLWT
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S.SSS
TTS
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   787. .790.........800......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Lawrence Kelley, Michael Sternberg 
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