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Job Descriptionexo99____
Confidence99.97%DateMon Feb 25 17:28:45 GMT 2019
Rank37Aligned Residues385
% Identity10%Templatec5a5uB_
PDB info PDB header:translationChain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b; PDBTitle: structure of mammalian eif3 in the context of the 43s preinitiation2 complex
Resolution9.00 Å
Model Dimensions (Å)X:78.572 Y:62.571 Z:72.294

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110.... .....120.
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Query Sequence  NPLSTSGACVGLLTMESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTS. . . .
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Template Sequence  TYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYLVTFSPLMDT
Template Known Secondary structure  S

TTS
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   241........250.........260.........270.........280.........290.........300
 
   122.......130 .........140......... 150.........160.........170.
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Query Sequence  . . . RGRIVVADV. SPQTVEDSDGELQRRTCLV. CSEEQTPVGDIVVPPSKHAVST. . . . .
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Template Sequence  QDDPQAIIIWDILTGHKKRGFHCESSAHWPIFKWSHDGKFFARMT. LDTLSIYETPSMGL
Template Known Secondary structure  SSTT

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   301........310.........320.........330.........340..... ....350.........
 
   172.......180....... ..190.........200.........210........
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Query Sequence  . . . . . . . . . LVRCVRSNAAVCSSSV. . . . VAVCDSRAMVWDVKGATQPVHTWVPSVDSSK
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Template Sequence  LDKKSLKISGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSR. . . . . . . . . . . QEIR
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   360.........370.........380.........390.........400.... ....
 
   219220.........230.........240........ .250.........260.........
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Query Sequence  NSPNEQEPLLFAQWVPNSDSVVLTGSYSGS. . . . . . . . . LVFTDIRTKEGSTSKLSLPAR
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Template Sequence  VRNLFNVVDCKLHWQKNGD. YLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDV. . . . VE
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   409410.........420....... ..430.........440.........450.........460. ..
 
   270.........280..... ....290.........300.........310.........320......
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Query Sequence  RGCMARCADFNTLLPF. . . ALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKL
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Template Sequence  MKETIIAFAWEP. NGSKFAVLHGEAPRISVSFYHVKSNGKIELSKMFDKQQANTIFWSP.
Template Known Secondary structure  S

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   464.....470..... ....480.........490.........500.........510.........520.
 
   327..330..... ....340.........350.........360.........370.........380
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Query Sequence  HSDIIATGG. . . VDGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVT. . .
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Template Sequence  QGQFVVLAGLRSMNGALAFVDTSDCTV. . MNIAEHYM. ASDVEWDP. . TGRYVVTSVSWW
Template Known Secondary structure  TSS

S
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TTTT..
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   522.......530.........540........ .550...... ...560.... .....570......
 
   381........390.........400.........410.........420.........430.......
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Query Sequence  . . . CGGELTLTGLAQEAMATLAVPVTERLSKPSGRRQEDKTAANEATELMEREKYGVGLL
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Template Sequence  SHKVDNAYWLWTFQGRL. . . LQKNNKDRFCQLLWRPRPPTLLSQEQIKQIKKD. . . . . . .
Template Known Secondary structure  T

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   577..580.........590... ......600.........610.........620......
 
   438.440.........450.........460.........470.........480.........490....
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Query Sequence  YSRRLREAYEVIVDCATKRFARKEITMAMRLAGLLDVKMLPKFDYRAKVESFEAEEK
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Template Sequence  . LKKYSKIFEQKDRLSQSK. . ASKELVERRRAMMEDFR. . . . . KYGKAAQELYVGQK
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   627..630.........640.... .....650.........660. ........670.....
 
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Lawrence Kelley, Michael Sternberg 
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