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Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank132Aligned Residues284
% Identity11%Templatec4u1fA_
PDB info PDB header:translationChain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit b; PDBTitle: crystal structure of middle domain of eukaryotic translation2 initiation factor eif3b
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90...... ...100.........110.... .....120..
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Query Sequence  NPLSTSGACVGLLTMESAEAKLSGMSKMQ. . . WLNLPSTEPLSSVEWCEG. . SLLVGTSR
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Template Sequence  WLMDDKVRDQFVLQDDVKTSVFWNSMFNEEDSLVESRENWSTNYVRFSPKGTYLFSYHQQ
Template Known Secondary structure  GGG
TT



SS

SS

TT
SSSSS

TTSS

SS
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   153......160.........170.........180.........190.........200.........210..
 
   123......130.........140.........150.........160.........170.........180..
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Query Sequence  GRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAV
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Template Sequence  G. VTAWGGPNFDRLRRFYHPD. VRNSSVSPNEKYLVTFSTEPIIVEEDNE. . . . . . . . . .
Template Known Secondary structure  .TTTT
TT.
TTS
SS




TT
T..........
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   213 ......220.........230.. .......240.........250.........260
 
   183......190.........200.........210.........220......... 230.........
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Query Sequence  CSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLF. . . AQWVPNSDSV
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Template Sequence  FSPFTKKNEGHQLCIWDIASG. . . . . . . . . . . LLMATFPVIKSPYLKWPLVRWSYNDK. Y
Template Known Secondary structure  T



GGGTT

TTT
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TT

S
SS
TTSS.
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   261........270.........280. ........290.........300....... .
 
   240.........250.........260.........270.........280.........290.
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Query Sequence  VLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATAS. . . . . . . .
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Template Sequence  CARMVGDSLIVHDATKNFMP. . . . LEAKALKPSGIRDFSFAP. EGVKLQPFRNGDEPSVL
Template Known Secondary structure  TTGGGTT....


GGGS
BS


S.S
B

SS

SSS

B
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   309310.........320........ .330.........340...... ...350.........360...
 
   292.......300.........310.........320.........330.........340.
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Query Sequence  . . . . . . . . . . SDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVV
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Template Sequence  LAYWTPETNNSACTATIAEVP. RGRVLKTVNLVQVSNVTLHWQN. QAEFLCFNVERHTKS
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SSS

T.T



S
T.TSS
TT
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   364.....370.........380.... .....390.........400...... ...410.........420.
 
   342... ....350.........360.........370.........380....
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Query Sequence  LWNL. . . . . . . . RSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGE
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Template Sequence  GKTQFSNLQICRLTERDIPVEKVELKDSVFEFGWEP. . HGNRFVTISVHEV
Template Known Secondary structure  SS
TTSTT


SS
T..TSS



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   422.......430.........440.........450....... ..460.........470
 
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No model constructed - rank, confidence too low




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