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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank59Aligned Residues239
% Identity11%Templatec5vljB_
PDB info PDB header:motor proteinChain: B: PDB Molecule:nuclear distribution protein pac1; PDBTitle: cryo-em structure of yeast cytoplasmic dynein with walker b mutation2 at aaa3 in presence of atp-vo4
Resolution10.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   90.........100.........110.... .....120.........130.... .....140.....
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Query Sequence  SGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQT. . VEDSDGELQRR
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Template Sequence  WIPRNLPSCLINVESSVTSVKLHPNLPIVFVATDHGKLYAFDLFNYTIPLASLQSHTKAI
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SS
S
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SSSSSSSTT

S

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SS
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   142.......150.........160.........170.........180.........190.........200.
 
   146...150.........160.........170.........180.
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Query Sequence  TCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAA. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TSMDVLFTNYTNSSKKNYLVIVTASKDLQIHVFKWVSEECKFQQIRSLLGHEHIVSAVKI
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SS
S
TTTTS
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   202.......210.........220.........230.........240.........250.........260.
 
   182.......190.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VCSSSVVAVCDSRAMV
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Template Sequence  WQKNNDVHIASCSRDQTVKIWDFHNGWSLKTFQPHSQWVRSIDVLGDYIISGSHDTTLRL
Template Known Secondary structure  GGGTT
TTTTTTT


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   262.......270.........280.........290.........300.........310.........320.
 
   198.200.........210.........220.........230.. ....
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Query Sequence  WDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQW. . . . . . . . . . . . . . . . . . . . . VPNS
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Template Sequence  THWPSG. . . . . . . . . . . NGLSVGTGHEFPIEKVKFIHFIEDSPEIRFRTPSTDRYKNWGM
Template Known Secondary structure  TTT
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S
TS
SSSSSGGGTSTT
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   322..... ..330.........340.........350.........360.........370
 
   237..240.........250.........260...... ...270.........280.....
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Query Sequence  DSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . . . . . . . . . PARRGCMARCADFNTLLPF
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Template Sequence  Q. YCVSASRDRTIKIWEIPLPTLMAHRAPIPNPTDSNFRCVLTLKGHLSWVRDISI. RGQ
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   371 ........380.........390.........400.........410.........420..... ...
 
   286...290.........300.........310... ......320....... ..330.......
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Query Sequence  ALATASSDGIISVFDCRYPSTAVRTIPS. LHGDIMSLKYLKLH. . . . . . . SDIIATGGVD
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Template Sequence  YLFSCADDKSVRCWDLN. TGQCLHVWEKLHTGFVNCLDLDV. DFDSNVTPRQMMVTGGLD
Template Known Secondary structure  TTS
TT.TT
TTS
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TT
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TT
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   429430.........440..... ....450.........460........ .470.........480......
 
   338.340...
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Query Sequence  GSVVLW
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Template Sequence  CKSNVF
Template Known Secondary structure  S
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   487..490..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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