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Job Descriptionexo99____
Confidence79.31%DateMon Feb 25 17:28:45 GMT 2019
Rank377Aligned Residues174
% Identity12%Templatec2hz6A_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:endoplasmic reticulum to nucleus signalling 1 PDBTitle: the crystal structure of human ire1-alpha luminal domain
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150.........160.........170..
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Query Sequence  EGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTL
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Template Sequence  ETLLFVSTLDGSLHAVSKRT. . . . . . . . . . . . . . . . . . . . . GSIKWTLKEDPVLQV. . . .
Template Known Secondary structure  TTTTSTTT.....................




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   30.........40......... 50.........60....
 
   173......180.........190.........200.........210.........220.........230..
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Query Sequence  VRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQW
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Template Sequence  . . . . . . . . . . PPAFLPDPNDGSLYTLEGLTKLPFTIPELVQASPCRLYMGKKQDIWYVI.
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TTT




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   65....70.........80.........90.........100.........110...
 
   233......240.........250.........260.........270.........280.........290..
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Query Sequence  VPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASS
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Template Sequence  . . DLL. . LYLGRTEYTITMYDTKTREL. . . . RWNATYFDYAASLPEDDVDYKMSHFVSNG
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B




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   129130. ........140.........150. ........160.........170.........180
 
   293......300.........310.........320.........330..
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Query Sequence  DGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIA
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Template Sequence  DGLVVTVDSE. SGDVLWIQNYASPVVAFYVWQR. EGLRKV
Template Known Secondary structure  S

TT.T


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   203......210.. .......220.........230.... .....240
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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