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Job Descriptionexo99____
Confidence68.36%DateMon Feb 25 17:28:45 GMT 2019
Rank384Aligned Residues157
% Identity15%Templatec5fqdA_
PDB info PDB header:ligaseChain: A: PDB Molecule:dna damage-binding protein 1; PDBTitle: structural basis of lenalidomide induced ck1a2 degradation by the crl4crbn ubiquitin ligase
Resolution2.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   226...230.........240.... .....250.........260.........270.....
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Query Sequence  PLLFAQWVPNSDSVVLTGS. . . . . . . . . . YSGSLVFTDIRTKEGSTSKLSLPARRGCMAR
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Template Sequence  SLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK. . . LQTVAEKEVKGAVY
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   815....820.........830.........840.........850....... ..860.........870.
 
   276...280.........290.........300.........310.........320.........330.....
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Query Sequence  CADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGG
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Template Sequence  SMVE. . FNGKLLASINS. . TVRLYEW. TTEKELRTECNHYNNIMALYLKT. KGDFILVGD
Template Known Secondary structure  ..TTTT...
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   872... ....880...... ...890... ......900.........910...... ...920.....
 
   336...340.. .......350.........360.........370.........380.........390...
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Query Sequence  VDGSVVL. . WNLRSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTLTGLAQE
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Template Sequence  LMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILD. . DDN. FLGAENAFNLFVCQKDSA
Template Known Secondary structure  TT
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   926...930.........940.........950.........960. ... .....970.........980..
 
   394
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Query Sequence  A
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Template Sequence  A
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   983
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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