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Job Descriptionexo99____
Confidence79.55%DateMon Feb 25 17:28:45 GMT 2019
Rank376Aligned Residues164
% Identity12%Templatec6bm0A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:cleavage and polyadenylation specificity factor subunit 1; PDBTitle: cryo-em structure of human cpsf-160-wdr33 complex at 3.8 a resolution
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   224.....230.........240.........250.........260.........270.........280...
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Query Sequence  QEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLL
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Template Sequence  KGPVTALC. . HCNGHLVSAIG. . QKIFLWSLRASE. . . . . LTGMAFIDTQLYIHQMIS. V
Template Known Secondary structure  SS
..TTT..TB


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   11691170...... ...1180....... ..1190......... 1200.........1210....... .
 
   284.....290.........300.........310. ........320.........330 .........340
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Query Sequence  PFALATASSDGIISVFDCRYPSTAVRTI. . PSLHGDIMSLKYLKLHSDI. IATGGVDGSV
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Template Sequence  KNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRNL
Template Known Secondary structure  SS
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   12191220.........1230.........1240.........1250.........1260.........1270........
 
   341... .....350.........360.........370.........380.......
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Query Sequence  VLWN. . . . . . . . . . . . . LRSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTL
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Template Sequence  MVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRWEN. . KHITWFATLDGGIGLL
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   12791280.........1290.........1300.........1310.........1320 .........1330......
 
   388.390.........
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Query Sequence  TGLAQEAMATLA
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Template Sequence  LPMQEKTYRRLL
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   13491350.........1360
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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