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Job Descriptionexo99____
Confidence99.85%DateMon Feb 25 17:28:45 GMT 2019
Rank197Aligned Residues167
% Identity17%Templatec5fvmD_
PDB info PDB header:transferaseChain: D: PDB Molecule:target of rapamycin complex subunit lst8; PDBTitle: cryo electron microscopy of a complex of tor and lst8
Resolution6.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200.........210.........220.........230.........240.....
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Query Sequence  SVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSY
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Template Sequence  LASAGYDHTIRFWEALTG. . . . . . . . . . . VCSRTIQHADSQVNRLEITSDKK. YLAAAG.
Template Known Secondary structure  BTTS
TTT
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B
S


SS

SS
B

SSS
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S.
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   5....10.........20.. .......30.........40..... ....50.
 
   246...250.........260......
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Query Sequence  SGSLVFTDIRTKEGSTSKLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HLHVRLYDIRSNNPNPVSSFEGHKGNVTSIAFQQENRWMVSSSEDGTIKVWDVRSPSVQR
Template Known Secondary structure  SSSSSSS
S
S
SSS

SSSSSTTS



SSSS



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   52.......60.........70.........80.........90.........100.........110.
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NYKHNAPVNEVAIHPNQGELISCDQDGNIRIWDLGENQCTNQLTPEDNTPLQSLSVASDG
Template Known Secondary structure 

SSS






SSTT



SSSSB

SSSS




B
S
SSS


S
S
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   112.......120.........130.........140.........150.........160.........170.
 
   267..270.........280.........290.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFALATASSDGI
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Template Conservation                                                .             
Template Sequence  SMLVAGNNKGNCYVWRMPHHTDASTLEPVTKFKSHTKYITRVLLSA. DVKNLATCSADHT
Template Known Secondary structure  S

SSS

SSSS



SS
S

S.SSSSTTS
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   172.......180.........190.........200.........210....... ..220.........230
 
   296...300.........310.........320.........330.........340.........350.....
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Query Sequence  ISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGR
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Template Sequence  ARVWNIEDNYQLETTLDGHQRWVWDCAFSA. DSAYLVTACSDHYVRLWDLSTSEIVRQYG
Template Known Secondary structure  SSSTT

SS


S

B
SS.
SSSBB


TTSSB
SSS



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   231........240.........250.........260 .........270.........280.........
 
   356...360........
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Query Sequence  AQYKCPVFDLITT
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Template Sequence  G. HHKGAVCVALN
Template Known Secondary structure  S.
SS
B





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   290 .........300.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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