Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.88%DateMon Feb 25 17:28:45 GMT 2019
Rank190Aligned Residues280
% Identity14%Templatec1gq1B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised form
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100.........110.... .....120.
Predicted Secondary structure 



































..
Query SS confidence 


















































. .






Query Sequence  AIGLNPLSTSGACVGLLTMESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTS
Query Conservation 

 
  

 

  
 


 



  



 
 








 








.. 




 
Alig confidence 


















































..






Template Conservation                
       
 
 
  
         
     
 




  
   
 
Template Sequence  TQQENDWDLENLFSVTLRDAGQIALIDGATYEIKSVLDTGYAVHISRLSASGRYLFVIGR
Template Known Secondary structure  SS

S


GGG
TTTT
TTT


SS

TTS
T
Template Predicted Secondary structure 





























Template SS confidence 



























































   157..160.........170.........180.........190.........200.........210......
 
   122.......130.... .....140.........150.........160.. .......170.
Predicted Secondary structure 






......




















.








...
Query SS confidence 












. . . . . .



























.








. . .
Query Sequence  RGRIVVADVSPQT. . . . . . VEDSDGELQRRTCLVCSEEQTPVGDIVV. PPSKHAVST. . .
Query Conservation 










 
......
  
 
 
    


 
 

  
 


 . 

 
  

...
Alig confidence 












......



























.








...
Template Conservation 

 
 
 

 
     
  
  
     
  
   




 
 
       
 
 
  

Template Sequence  DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL
Template Known Secondary structure  TSTTSSS



S

STT
TTTTTTTT
Template Predicted Secondary structure 































Template SS confidence 



























































   217..220.........230.........240.........250.........260.........270......
 
   172.......180.........190.........200.........
Predicted Secondary structure  ......................


























Query SS confidence  . . . . . . . . . . . . . . . . . . . . . .





































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . LVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHT
Query Conservation  ......................

 

  
   









 










 

  
Alig confidence  ......................
































.....
Template Conservation                      

   

  
       
       
   
     .....
Template Sequence  EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLD. . . . .
Template Known Secondary structure 



TTT

S



SSSSTTTTTT
SS.....
Template Predicted Secondary structure 



























.....
Template SS confidence 



























































   277..280.........290.........300.........310.........320.........330.
 
   210.........220.........230.........240.........250.........260.........
Predicted Secondary structure 





































Query SS confidence 



























































Query Sequence  WVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPAR
Query Conservation 
  
   
 

 


  
 















 












  



 

 
Alig confidence  .....






















































Template Conservation  .....                  



  
 
       
 
 
  
   
         
Template Sequence  . . . . . NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT
Template Known Secondary structure  .....S



TT
TTS
GGGTTTTT
SSSS
Template Predicted Secondary structure  .....
























Template SS confidence 



























































   332.......340.........350.........360.........370.........380......
 
   270.........280.........290. ........300. ........310.........320.
Predicted Secondary structure  .









.



......









Query SS confidence  .





















.









. . . . . .



















Query Sequence  . RGCMARCADFNTLLPFALATAS. SDGIISVFDC. . . . . . RYPSTAVRTIPSLHGDIMSL
Query Conservation  .
   
 





 

 





. 








......
 
 
 



 



 
 

Alig confidence  .











.








.









......



















Template Conservation   
         
 .

         
  
 


                    
     
Template Sequence  PHPGRGANFVHPT. FGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI
Template Known Secondary structure  B

TT
TT.TBSSSS

TTTSTTTBTS
S
S



Template Predicted Secondary structure 






.






















Template SS confidence 



























































   387..390......... 400.........410.........420.........430.........440.....
 
   322.......330.. .......340.........350.....
Predicted Secondary structure 





.......















Query SS confidence 










. . . . . . .






















Query Sequence  KYLKLHSDIIA. . . . . . . TGGVDGSVVLWNLRSLPTYRVGR
Query Conservation 



 





.......














 


 
 
Alig confidence 



.





.......






















Template Conservation 
 

.

  
               
 
 
           
Template Sequence  KTHP. NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP
Template Known Secondary structure 

T.T
S

TT
SST
GGG

SSSS

Template Predicted Secondary structure 

.

























Template SS confidence 








































   446... 450.........460.........470.........480.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D