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Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank98Aligned Residues251
% Identity12%Templatec3zwlB_
PDB info PDB header:translationChain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit i; PDBTitle: structure of eukaryotic translation initiation factor eif3i complex2 with eif3b c-terminus (655-700)
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8990.........100.........110.... .....120.........130...... ...140.....
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Query Sequence  LSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRR
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Template Sequence  FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI
Template Known Secondary structure  SS

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SS
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   -4...0.........10.........20.........30.........40.........50.....
 
   146...150.........160.........170.........180.
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Query Sequence  TCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAA. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNV
Template Known Secondary structure 
TTSSTTTTTT


SS

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B
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   56...60.........70.........80.........90.........100.........110.....
 
   182.......190.........200...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VCSSSVVAVCDSRAMVWDVKGA
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Template Sequence  MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDG
Template Known Secondary structure  TTB


TTT


SS
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   116...120.........130.........140.........150.........160.........170.....
 
   204.....210.........220.........230.........240.........250.........260...
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Query Sequence  TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSK
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Template Sequence  KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT. YFITSSRDTNSFLVDVSTLQV. . . .
Template Known Secondary structure  TTTTT

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   176...180.........190.........200......... 210.........220.........230
 
   264.....270.........280.........290.........300.........310.........320...
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Query Sequence  LSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKY
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Template Sequence  LKKYETDCPLNTAVITPL. KEFIILGGGQEFEARFYHKI. FEEEIGRVQGHFGPLNTVAI
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SS

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   231........240........ .250.........260........ .270.........280........
 
   324.....330.........340.......
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Query Sequence  LKLHSDIIATGGVDGSVVLWNLRS
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Template Sequence  SP. QGTSYASGGEDGFIRLHHFEK
Template Known Secondary structure 
T.TSSTTS
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   302. ......310.........320....
 
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No model constructed - rank, confidence too low




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