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Job Descriptionexo99____
Confidence95.25%DateMon Feb 25 17:28:45 GMT 2019
Rank350Aligned Residues177
% Identity9%Templatec3soqA_
PDB info PDB header:protein binding/antagonistChain: A: PDB Molecule:low-density lipoprotein receptor-related protein 6; PDBTitle: the structure of the first ywtd beta propeller domain of lrp6 in2 complex with a dkk1 peptide
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   172.......180.........190.........200.........210.........220.........230.
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Query Sequence  LVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQ
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Template Sequence  DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE. . . . . . . . . . SVQNVVVSGLLSPDGLA
Template Known Secondary structure  GGGTTTTTTTSTT..........




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   52.......60.........70.........80.... .....90.........100.
 
   232.......240.........250.........260.........270.........280.........290.
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Query Sequence  WVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATAS
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Template Sequence  CDWLGEKLYWTDSETNRIEVSNLDGSLR. . . . KVLFWQELDQPRAIALDPSSGFMYWTDW
Template Known Secondary structure  TTTTTTTTTTS
S
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SSTTTT
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   102.......110.........120......... 130.........140.........150.......
 
   292.......300.........310.........320.........330.........340.........350.
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Query Sequence  SDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTY
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Template Sequence  GEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ
Template Known Secondary structure  SSS
TTS
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TTTTTTTTTTS
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   158.160.........170.........180.........190.........200.........210.......
 
   352.......360..
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Query Sequence  RVGRAQYKCPV
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Template Sequence  AVVKGSLPHPF
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S

S
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   218.220........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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