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Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank109Aligned Residues213
% Identity20%Templatec3w15A_
PDB info PDB header:protein transportChain: A: PDB Molecule:peroxisomal targeting signal 2 receptor; PDBTitle: structure of peroxisomal targeting signal 2 (pts2) of saccharomyces2 cerevisiae 3-ketoacyl-coa thiolase in complex with pex7p and pex21p
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   95....100.........110... ......120. ........130.........140....
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Query Sequence  MQWLNLPSTEPLSSVEWCE. . . GSLLVGTS. . . . . . . RGRIVVADVSPQTVEDSDGELQR
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Template Sequence  LRYHMQGFSG. . YGVQYSPFFDNRLAVAAGSNFGLVGNGKLFILEIDRSGR. . . . . . . . .
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TTGGGTSS

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   2.......10. ........20.........30.........40.........50
 
   145....150.........160.........170.........180.........190.........200....
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Query Sequence  RTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGAT
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Template Sequence  . . . . . . . . . . . . . . . . IVEVNSFLTQDCLFDLAWNESHENQVLVAQGDGTLRLFDTTFKE
Template Known Secondary structure  ................SS

TT
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   51........60.........70.........80.........90....
 
   205....210.........220.........230.........240.........250.........260....
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Query Sequence  QPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKL
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Template Sequence  . . . . . . . . . . FPIAIFKEHEREVFSCNWNLVNRQNFLSSSWDGSIKIWSPLRKQSLMTLT
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   95....100.........110.........120.........130.........140....
 
   265.
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Query Sequence  SL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  PRPLEITKMVDPLNAIILKNCVYQAQFSPHDQNLVLSCSGNSYASLFDIRLPSGKNQNNF
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TTGGGS




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   145....150.........160.........170.........180.........190.........200....
 
   267..270.........280...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLL
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Template Sequence  LVHSGLEALTCDFNKYRPYVVATGGVDNAIRIWDIRMSCINEIPNAHGLAIRKVTWSPHH
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STTS

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   216...220.........230.........240.........250.........260.........270.....
 
   284.....290.........300... ......310.........320......... 330...
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Query Sequence  PFALATASSDGIISVFDCRY. . . . . . . . PSTAVRTIPSLHGDIMSLKYLKLHSD. . IIAT
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Template Sequence  SNILMSASYDMTCRIWRDLSNKTNSTDATKGSIFNFTQHSEFVFGADWSL. WGKPGYVAS
Template Known Secondary structure  TTTTS

TT


TTTSTTTT


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   296...300.........310.........320.........330.........340..... ....350....
 
   334.....340.....
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Query Sequence  GGVDGSVVLWNL
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Template Sequence  TAWDGNLFVWNG
Template Known Secondary structure  TTS
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   362.......370...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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