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Job Descriptionexo99____
Confidence99.08%DateMon Feb 25 17:28:45 GMT 2019
Rank270Aligned Residues242
% Identity10%Templatec2fp8A_
PDB info PDB header:lyaseChain: A: PDB Molecule:strictosidine synthase; PDBTitle: structure of strictosidine synthase, the biosynthetic entry to the2 monoterpenoid indole alkaloid family
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110..... ....120.........130...... ...140.........150..
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Query Sequence  QWLNLPSTEPLSSVEWCEGS. . LLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVCSE
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Template Sequence  EILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENS
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   33......40.........50.........60.........70.........80.........90..
 
   153......160.........170.........180.........190.........200.........210..
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Query Sequence  EQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVP
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Template Conservation                         
                                    
Template Sequence  TDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYA
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   93......100.........110.........120.........130.........140.........150..
 
   213......220.........230.........240.........250.........260.........270.
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Query Sequence  . SVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRG
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Template Sequence  VTVDQRTGIVYFTDVSTLYDDRGVQQ. IMDTSDKTGRLIKYDPSTKE. . . . . TTLLLKEL
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   153......160.........170........ .180.........190........ .200......
 
   272.......280.........290.........300.........310.........320.........330.
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Query Sequence  CMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDII
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Template Sequence  HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPNPGNIKRNA. DGHFW
Template Known Secondary structure  S



TTSSGGGTSSSTTTT

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   207..210.........220.........230.........240.........250.........260 .....
 
   332.......340....
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Query Sequence  ATGGVDGSVVLWN
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Template Conservation 
            
Template Sequence  VSSSEELDGNMHG
Template Known Secondary structure  TTSSTTS
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   266...270........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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