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Job Descriptionexo99____
Confidence99.95%DateMon Feb 25 17:28:45 GMT 2019
Rank71Aligned Residues253
% Identity14%Templatec3ei4D_
PDB info PDB header:dna binding proteinChain: D: PDB Molecule:dna damage-binding protein 2; PDBTitle: structure of the hsddb1-hsddb2 complex
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.... .....120.........130.........140.........150
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Query Sequence  KMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVC
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Template Sequence  RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK. . . . . . . . . . . . . . .
Template Known Secondary structure  T


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   102.......110.........120.........130.........140......
 
   151........160.........170.........180.........190.........200.........210
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Query Sequence  SEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTW
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Template Sequence  . . . . . . . . . . PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL. . . . .
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B
TT
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   147..150.........160.........170.........180.........190.
 
   211........220.........230.........240.........250.........260......
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Query Sequence  VPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . .
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Template Sequence  . . . . RVFASSDTINIWFCSLDVSASSR. MVVTGDNVGNVILLNMDGKELWNLRMHKKKVT
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SSTT

TTTT.SSS
TT

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   192.......200.........210.... .....220.........230.........240......
 
   267..270.........280.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFALAT
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Template Sequence  HVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP. DGARLLT
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TTSTT
TTSTTT

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   247..250.........260.........270.........280.........290........ .300.....
 
   290.........300.........310...... ...320.........330.....
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Query Sequence  ASSDGIISVFDCRYPSTAVRTIPSLHG. . . . . . DIMSLKYLKLHSDIIATGG. . . . . . . .
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Template Sequence  TDQKSEIRVYSAS. QWDCPLGLIPHPHRHFQHLTPIKAAWHP. RYNLIVVGRYPDPNFKS
Template Known Secondary structure  SSS
TT.
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   306...310........ .320.........330.........340...... ...350.........360...
 
   336...340.........350.........360..... ....370.........380.......
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Query Sequence  . . . . VDGSVVLWNLRSLPTYRVGRAQYKCPVFDL. ITTPWSVEQHVIGVTCGGELTL
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Template Sequence  CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP. . MGDTLASAM. GYHILI
Template Known Secondary structure  SSS


S

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   364.....370.........380.........390.........400.. .......410. ......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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