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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank144Aligned Residues240
% Identity15%Templatec5igoD_
PDB info PDB header:hydrolase/peptideChain: D: PDB Molecule:e3 ubiquitin-protein ligase cop1; PDBTitle: wd40 domain of arabidopsis thaliana e3 ubiquitin ligase cop1 in2 complex with peptide from trib1
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   99100.........110.... .....120.........130.. .......140.........150
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Query Sequence  NLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSP. . . . . . QTVEDSDGELQRRTCLVC
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Template Sequence  IFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPMQCPIVEMSTRSKLSCLSW
Template Known Secondary structure  TTTS



TTSSTTT





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   367..370.........380.........390.........400.........410.........420......
 
   151........160......... 170.........180.........190.....
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Query Sequence  SEEQTPVGDIVVPPSKHAV. . . . . . . . . . . . . . . STLVRCVRSNAAVCSSSVVAVCDSRA
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Template Sequence  NKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKV
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SSSTTTTS
TTTT


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   429430.........440.........450.........460.........470.........480........
 
   196...200......... 210.........220...
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Query Sequence  MVWDVKGATQPVHT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WVPSVDSSKNSPNE
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Template Sequence  KVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGH
Template Known Secondary structure  TT
SS
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TT
TTTTS
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   489490.........500.........510.........520.........530.........540........
 
   224.....230.........240.........250.........260.........270.........280...
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Query Sequence  QEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLL
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Template Sequence  KKAVSYVKFLSNN. . ELASASTDSTLRLWDVKDNLP. . . . VRTFRGHTNEKNFVGLTV. N
Template Known Secondary structure  SS
SSSS..TTTTTTT....

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   549550.........560. ........570.........580.. .......590.........600 .
 
   284.....290.........300.........310.. .......320.........330.
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Query Sequence  PFALATASSDGIISVFDCRYPSTAVRTIP. . . . . . . . . . . . SLHGDIMSLKYLKLHSDII
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Template Sequence  SEYLACGSETNEVYVYHKE. ITRPVTSHRFGSPDMDDAEEEAGSYFISAVCWKS. DSPTM
Template Known Secondary structure  SS

TTSTT.
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GGGSSSS

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   602.......610.........620 .........630.........640.........650.... .....
 
   332.......340.......
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Query Sequence  ATGGVDGSVVLWNLRS
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Template Sequence  LTANSQGTIKVLVLAA
Template Known Secondary structure  TT


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   660.........670.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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