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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank141Aligned Residues271
% Identity11%Templatec5a9qK_
PDB info PDB header:transport proteinChain: K: PDB Molecule:nucleoporin nup37; PDBTitle: human nuclear pore complex
Resolution23.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.... .....80.........90 .........100.........
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Query Sequence  LNPLSTSG. . . . . ACVGLLTMESAEAKLS. . . . . . . . . . . . GMSKMQWLNLPSTEPLSSV
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Template Sequence  VHVVEFNPFENGDSGNLIAYGGNNYVVIGTCTFQEEEADVEGIQYKTLRTFHHGVRVDGI
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SS
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   1920.........30.........40.........50.........60.........70........
 
   110.... .....120.........130... ......140.........150.. ...
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Query Sequence  EWCEG. . . . . . . . . . SLLVGTSRGRIVVADVSPQ. . . TVEDSDGELQRRTCLVCSE. EQT
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Template Sequence  AWSPETRLDSLPPVIKFCTSAADMKIRLFTSDLQDKNEYKVLEGHTDFINGLVFDPKEGQ
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   7980.........90.........100.........110.........120.........130........
 
   156...160.........170.........180.........190.........200.........210. ...
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Query Sequence  PVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWV. PSV
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Template Sequence  EIASVSDDHTCRIWNLEGVQTAHFVLHSPGMSVCWHPEETFKLMVAEKNGTIRFYDLLAQ
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   139140.........150.........160.........170.........180.........190........
 
   215....220.........230.........240.........250.........260.........270....
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Query Sequence  DSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMA
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Template Sequence  QAILSLESEQVPLMSAHWCLKNT. FKVGAVAGNDWLIWDITRSS. . . YPQNKRPVHMDRA
Template Known Secondary structure  S


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   199200.........210.........220. ........230.........240. ........250....
 
   275....280......... 290.........300.........310.........320.........330
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Query Sequence  RCADFNTLLPFALAT. . . . ASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDI
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Template Sequence  CLFRWSTISENLFATTGYPGKMASQFQIHHLG. HPQPI. . LMGSVAVGSGLSWHR. TLPL
Template Known Secondary structure  SS

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   255....260.........270.........280...... ...290. ........300...... ...310
 
   331........340......
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Query Sequence  IATGGVDGSVVLWNLR
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Template Sequence  CVIGG. DHKLLFWVTE
Template Known Secondary structure  .SS

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   311.... ....320.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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