Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank156Aligned Residues284
% Identity14%Templatec6bk8D_
PDB info PDB header:rna binding proteinChain: D: PDB Molecule:pre-mrna-splicing factor prp46; PDBTitle: s. cerevisiae spliceosomal post-catalytic p complex
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70..... ....80... ......90.........100.........110... .
Predicted Secondary structure 










.





.....


















.
.
Query SS confidence 












.







. . . . .





























.
.
Query Sequence  LAIGLNPLSTSGA. CVGLLTME. . . . . SAEAKLSGMSKMQWLNLPSTEPLSSVEWCE. G.
Query Conservation   

 
  

 

 . 
 


 
.....


  



 
 








 







.
.
Alig confidence 












.







.....





























.
.
Template Conservation 
        


     
        
               
 

   
  
 


 

Template Sequence  HASAFVNKIFQPEVAEELIVNRYEKLLSQRPEWHAPWKLSRVINGHLGWVRCVAIDPVDN
Template Known Secondary structure 


SSTTTSTT










SS



SSS
Template Predicted Secondary structure 





























Template SS confidence 



























































   93......100.........110.........120.........130.........140.........150..
 
   115....120.........130...... ...140.........150.........160.........170..
Predicted Secondary structure  .









.




























Query SS confidence  .





















.



































Query Sequence  . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTL
Query Conservation  . 




 










 

 . 
 
 
    


 
 

  
 


  

 
  


Alig confidence  .





















.



































Template Conservation    




 
  
 

                                             
Template Sequence  EWFITGSNDTTMKVWDLATGKLKTTLAGHVMTVRDVAVSDRHPYLFSVSEDKTVKCWDLE
Template Known Secondary structure 

SSSTTT



SS

SSSSTTS
TT
Template Predicted Secondary structure 







































Template SS confidence 



























































   153......160.........170.........180.........190.........200.........210..
 
   173...... 180.........190.........200.........210.........
Predicted Secondary structure 






.............
























Query SS confidence 






. . . . . . . . . . . . .







































Query Sequence  VRCVRSN. . . . . . . . . . . . . AAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKN
Query Conservation 
 

  
.............   









 










 

  
  
   
 
Alig confidence 






.............























...........




Template Conservation                                              ...........     
Template Sequence  KNQIIRDYYGHLSGVRTVSIHPTLDLIATAGRDSVIKLWDMRTR. . . . . . . . . . . IPVIT
Template Known Secondary structure  TT


SS

SSS
TTSSSSS
...........
Template Predicted Secondary structure 







































...........




Template SS confidence 



























































   213......220.........230.........240.........250...... ...260.
 
   220.........230.........240.........250.........260......
Predicted Secondary structure 




























.............
Query SS confidence 














































. . . . . . . . . . . . .
Query Sequence  SPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . . . . . . . . . . .
Query Conservation 
 


  
 















 












  



 
.............
Alig confidence 

















.



























.............
Template Conservation                    .                                         
Template Sequence  LVGHKGPINQVQCTPVDP. QVVSSSTDATVRLWDVVAGKTMKVLTHHKRSVRATALHPKE
Template Known Secondary structure 


SS

SSSS.
TTS

TTTSS


SS



TTT
Template Predicted Secondary structure 

















.








































Template SS confidence 



























































   262.......270......... 280.........290.........300.........310.........320
 
   267..270.........280.........290.........300..
Predicted Secondary structure  ........................

















Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . .



































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFALATASSDGIISVFDCR
Query Conservation  ........................
 

   
 





 

 





 









Alig confidence  ........................














.



















Template Conservation                                         .          
  
 

   
Template Sequence  FSVASACTDDIRSWGLAEGSLLTNFESEKTGIINTLSIN. QDDVLFAGGDNGVLSFYDYK
Template Known Secondary structure  S
SS

TTT


B


TT


B



.TTSBTTSSS
Template Predicted Secondary structure 






































.













Template SS confidence 



























































   321........330.........340.........350......... 360.........370.........
 
   303......310... ......320.........330.........340.........350....
Predicted Secondary structure 




........
























Query SS confidence 










. . . . . . . .








































Query Sequence  YPSTAVRTIPS. . . . . . . . LHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVG
Query Conservation   
 
 



 
........


 
 





 




















 


 
 
Alig confidence  .









........











.

















........

Template Conservation  .                  
   
  
  

.

  
 
 
 
 




 ........  
Template Sequence  . SGHKYQSLATREMVGSLEGERSVLCSTFDK. TGLRLITGEADKSIKIWK. . . . . . . . QD
Template Known Secondary structure  .S





SS

STT


S.SSSTTT........

Template Predicted Secondary structure  .













.






........

Template SS confidence 



























































   380.........390.........400......... 410.........420....... ..
 
   355....360.........
Predicted Secondary structure 









Query SS confidence 














Query Sequence  RAQYKCPVFDLITTP
Query Conservation 

     
  
    
Alig confidence 














Template Conservation                
Template Sequence  ETATKESEPGLAWNP
Template Known Secondary structure  TT

TTTS

S



Template Predicted Secondary structure 














Template SS confidence 














   430.........440....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D