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Job Descriptionexo99____
Confidence99.96%DateMon Feb 25 17:28:45 GMT 2019
Rank47Aligned Residues283
% Identity15%Templatec3jcmB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp4; PDBTitle: cryo-em structure of the spliceosomal u4/u6.u5 tri-snrnp
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   56...60.........70.........80... ......90....... ..100.........110.
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Query Sequence  AHHRENVLAIGLNPLSTSGACVGLLTME. SAEAKLSGMSKMQW. . . LNLPSTEPLSSVEW
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Template Sequence  LAGSQLVSTKPISAVSLSTDDMVVATGSWAGDLQVLNSQTLQPLTQKLDSHVGKIGAIDW
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   167..170.........180.........190.........200.........210.........220......
 
   112.. .....120.........130...... ...140.........150.........160...
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Query Sequence  CEG. . . SLLVGTSRGRIVVADVSPQTVE. . . . . DSDGELQRRTCLVCSEEQTPVGDIVVP
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Template Sequence  HPDSNNQMISCAEDGLIKNFQYSNEEGGLRLLGDLVGHERRISDVKYHPSGKFIGSASHD
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   227..230.........240.........250.........260.........270.........280......
 
   164.....170.. .......180.........190.........200.........210.........220.
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Query Sequence  PSKHAVSTL. . VRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSP
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Template Sequence  MTWRLWDASTHQELLLQEGHDKGVFSLSFQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLA
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   287..290.........300.........310.........320.........330.........340......
 
   222.......230.........240.........250.........260.........270.........280.
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Query Sequence  NEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNT
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Template Sequence  GHSKPIYTVAWSPNGY. QVATGGGDGIINVWDIRKRDE. . GQLNQILAHRNIVTQVRFSK
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   347..350.........360.. .......370.........380... ......390.........400...
 
   282. ......290.........300.........310.........320.........330.........
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Query Sequence  LL. . PFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGS
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Template Sequence  . EDGGKKLVSCGYDNLINVYSSD. TWLKMGSLAGHTDKIISLDISN. NSHFLVSGGWDRS
Template Known Secondary structure  .GGGS

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   404.....410.........420..... ....430.........440....... ..450.........460
 
   340....
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Query Sequence  VVLWN
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Template Sequence  IKLWN
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   461....
 
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No model constructed - rank, confidence too low




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