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Job Descriptionexo99____
Confidence28.17%DateMon Feb 25 17:28:45 GMT 2019
Rank404Aligned Residues213
% Identity16%Templatec1xi4D_
PDB info PDB header:endocytosis/exocytosisChain: D: PDB Molecule:clathrin heavy chain; PDBTitle: clathrin d6 coat
Resolution7.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   183......190.........200.........210.........220.........230.........240..
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Query Sequence  CSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLT
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Template Sequence  SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSL. . . . . . AGCQIINYRTDAKQKWLLLT
Template Known Secondary structure  SSS

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   115....120.........130.........140........ .150.........160........
 
   243 ......250.........260.........270.........280 .........290.
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Query Sequence  G. . . . . . SYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFN. . TLLPFALATAS. . .
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Template Sequence  GISAQQNRVVGAMQLYSVDRKV. . . . . SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQ
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   169170.........180.........190 .........200.........210.........220...
 
   292.......300.........310.........320......... 330........
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Query Sequence  SDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSD. . . . . . . . . . . . . IIATGGVDG
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Template Sequence  AGGKLHIIEVGTPPTGNQPF. . . PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG
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   224.....230.........240... ......250.........260.........270.........280
 
   339340.........350.........360.........370.........380.........390......
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Query Sequence  SVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTLTGLAQEAMA. .
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Template Sequence  YIHLYDLETGTCIYMNRI. SGETIF. . VTAPHEATAGIIGVNRKGQVLSVCVEEENIIPY
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   281........290........ .300.... .....310.........320.........330.......
 
   397..400.........410..
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Query Sequence  . . . . . . . . TLAVPVTERLSKPSGR
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Template Sequence  ITNVLQNPDLALRMAVRNNLAGAE
Template Known Secondary structure  TTS

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   338.340.........350.........360.
 
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No model constructed - rank, confidence too low




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Lawrence Kelley, Michael Sternberg 
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