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Job Descriptionexo99____
Confidence91.74%DateMon Feb 25 17:28:45 GMT 2019
Rank358Aligned Residues266
% Identity15%Templatec1kv9A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   107..110.........120.........130.........140.........150.........160.....
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Query Sequence  SSVEWCEGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPS.
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Template Sequence  RGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNG
Template Known Secondary structure 


BT
TTSTTT


S
TTSS
B

S

TT

B
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   111........120.........130.........140.........150.........160.........170
 
   166...170.........180.....
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Query Sequence  . . . . . . . . . KHAVSTLVRCVRSNAAVCSS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGT
Template Known Secondary structure 
TTT

B
TTT

SS


TTS

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   171........180.........190.........200.........210.........220.........230
 
   186...190.... .....200.........210...
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Query Sequence  . . . . . . . . . . . . . SVVAVCDSR. . . . . . . . . . . . . . . . . . . AMVWDVKGATQPVHTWVPS
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Template Sequence  VWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTP
Template Known Secondary structure 

S
TTTT


SS
STT



TTTT
TTT

SST
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   231........240.........250.........260.........270.........280.........290
 
   214.....220.........230.........240.........250.........260.........270...
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Query Sequence  VDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCM
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Template Sequence  GDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK. . . LISAEKFGKVTW
Template Known Secondary structure  T

S




S
TT

TTSTTT

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S
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   291........300.........310.........320.........330..... ....340.......
 
   274... ..280.........290..
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Query Sequence  ARCA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DFNTLLPFALATASS. . . . . .
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Template Sequence  AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYR
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TTT


TTTT
SSS
SS
TT
SS
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TTTT


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   348.350.........360.........370.........380.........390.........400.......
 
   293......300.........310.........320...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DGIISVFDCRYPSTAVRTIPSLHGDIMSLKY
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Template Sequence  NEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV. KQKAAWKVPYPTHWNGGTLS
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GGG



SS


SS
GGG




GGG
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   408.410.........420.........430.........440...... ...450.........460......
 
   324.....330.........340.........350 .........360.........370.........380
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Query Sequence  LKLHSDIIATGGVDGSVVLWNLRSLPT. . . YRVGRAQYKCPVFDLITTPWSVEQHVIGVT
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Template Sequence  TA. . GNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL. . A. . GRQ. YVAIM
Template Known Secondary structure  T..TT
TTSTTT


SS


S

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   467. .470.........480.........490.........500.........510 . ... .....
 
   381..
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Query Sequence  CGG
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Template Sequence  AGW
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   520..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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