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Job Descriptionexo99____
Confidence96.99%DateMon Feb 25 17:28:45 GMT 2019
Rank321Aligned Residues181
% Identity13%Templatec5a9qB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:nuclear pore complex protein nup155; PDBTitle: human nuclear pore complex
Resolution23.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   186...190.........200.........210.........220.........230. ......
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Query Sequence  SVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQ. . . . . . . . WVPNSD
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Template Sequence  RAWLTIDSDIFMWNYEDGGD. . . . . . . . . . . LAYFDGLSETILAVGLVKPKAGIFQPHVR
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   114.....120.........130... ......140.........150.........160..
 
   238.240.........250.........260......... 270.........280.........290..
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Query Sequence  SVVLTGSYSGSLVFTDIRTKEGSTSKLSLPAR. . . . . RGCMARCADFNTLLPFALATASS
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Template Sequence  HLLVL. ATPVDIVILGLSYANLSGGMQLLPDPLSLPTDNTYLLTITSTD. NGRIFLAG. K
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   163.... ..170.........180.........190.........200.........210 ........ .
 
   293......300....... ..310.........320.........330.........
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Query Sequence  DGIISVFDCRYPSTA. . . . . . . . . . . . . VRTIPSLHGDIMSLKYLKLHSDIIATGGVDGS
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Template Sequence  DGC. . LYEVAYQKINHSKSSLSFLVPSLLQFTFSEDDPILQIAIDN. SRNILYTRSEKGV
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   232.. .....240.........250.........260.........270..... ....280........
 
   340...... ...350.........360......... 370.........380
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Query Sequence  VVLWNLR. . . . . . . . . . . . . . . . . SLPTYRVGRAQYKCPVFDLITTP. . WSVEQHVIGVT
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Template Sequence  IQVYDLGQDGQGMSASVSQNAIVSAAGNIARTIDRSVFKIVQIAVIENSESLDCQLLAVT
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   300.........310.........320.........330.........340.........350.........
 
   381..
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Query Sequence  CGG
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Template Sequence  HAG
Template Known Secondary structure  SS
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   363..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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