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Job Descriptionexo99____
Confidence85.28%DateMon Feb 25 17:28:45 GMT 2019
Rank371Aligned Residues205
% Identity9%Templatec2xe4A_
PDB info PDB header:hydrolase/inhibitorChain: A: PDB Molecule:oligopeptidase b; PDBTitle: structure of oligopeptidase b from leishmania major
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.... .....120... ......130.........140.........150........
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Query Sequence  LSSVEWCEG. . . SLLVGTSRG. . . . RIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVG
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Template Sequence  MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLF
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TTTT
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   157..160.........170.........180.........190.........200.........210......
 
   159160.........170.........180.........190.........200.........210........
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Query Sequence  DIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSK
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Template Conservation 
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Template Sequence  YVTKDETLRENK. . . . . . . . . . . . . . . . . . . . . . . . VWRHVMGK. . . . . . . . LQSEDVCL
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TT

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   217..220........ .230...... ...240....
 
   219220.........230.........240.........250.. .......260.........270......
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Query Sequence  NSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFT. . DIRTKEGSTSKLSLPARRGCMARC
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Template Sequence  YEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD
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TT

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   245....250.........260.........270.........280.........290.........300....
 
   277..280.........290.... .....300.........310.........320.........330..
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Query Sequence  ADFNTLLPFALATASSDG. . . . IISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIA
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Template Conservation       .       
         
                                 
  
Template Sequence  VQMHG. TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVV
Template Known Secondary structure  T.TT
TTT
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   305.... 310.........320.........330.........340.........350.........360...
 
   333......340...
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Query Sequence  TGGVDGSVVLW
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Template Conservation       
     
Template Sequence  AGRRAGLTRIW
Template Known Secondary structure  TT
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   364.....370....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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