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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank148Aligned Residues287
% Identity10%Templatec6hqaB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:subunit (90 kda) of tfiid and saga complexes; PDBTitle: molecular structure of promoter-bound yeast tfiid
Resolution7.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70.........80.....
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Query Sequence  LLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRENVLAIGLNPLSTSGACVGLLTMESA
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Template Sequence  TFHNTNNDLTCLKFNDD. . . . . . . . . . STMVASGFQDSFIKLWSIDGSPLRSLLKNDPYN
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SS
TT..........TTTTT


SSS




TTTT



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   385....390.........400. ........410.........420.........430....
 
   86...90... ......100.........110.... .....120.........130...... ...140.
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Query Sequence  EAKLSGMS. KMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSDGE
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Template Sequence  QQNNDGVAVKGSRRLVGHSGAVYGVDFSPDNRYLISCSEDKTVRLWSLDTYTCLVSYKGH
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TTTT

S


SS




TTTT


TTT


B

TTTT

B





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   435....440.........450.........460.........470.........480.........490....
 
   142.......150.........160.........170......... 180........
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Query Sequence  LQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . AAVCSSSVV
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Template Sequence  SSSVWDVKFSPMGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVEFHPNSTYLFT
Template Known Secondary structure  SS
B





TTTT


B
BTTT

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   495....500.........510.........520.........530.........540.........550....
 
   189190.........200......... 210.......
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Query Sequence  AVCDSRAMVWDVKGATQPVHT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WVPSVDSS
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Template Sequence  GSSDKTARMWDIARGECVRVFMGHSGAINCLAVSPDGRWLASAGEDSVVCLWDISTGRRI
Template Known Secondary structure  TTT
B
BTTTTB





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BTTTTB


TTT

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   555....560.........570.........580.........590.........600.........610....
 
   218.220... ......230.........240.........250.........260.........270......
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Query Sequence  KNSPNE. QEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARC
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Template Sequence  KAMRGHGRSSIYSLAFSREGT. VLVSTGADNSVRVWDVKKNTNSPSA. . . . . . . . . . QPE
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SS
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TTTT.

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   615....620.........630..... ....640.........650.........660 ...
 
   277..280.........290.........300.........310.........320.........330......
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Query Sequence  ADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGV
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Template Sequence  PINDV. TAQGIQKKTEDLRRRKEIVA. TNDHMSVYFTKKTPVYTVHFTR. RNLCLAGGVF
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TTTT
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TT.TT






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   664.... .670.........680........ .690.........700.........710 .........720
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Lawrence Kelley, Michael Sternberg 
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