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Job Descriptionexo99____
Confidence99.91%DateMon Feb 25 17:28:45 GMT 2019
Rank168Aligned Residues305
% Identity10%Templatec6fqlA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:e3 ubiquitin-protein ligase trim71; PDBTitle: crystal structure of danio rerio lin41 filamin-nhl domains in complex2 with mab-10 3'utr 13mer rna
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.........70.........80..
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Query Sequence  LRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRENVLAIGLNPLSTSGACVGLLTM
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Template Sequence  IKRALQGKPASFTVVGYDHD. . . . . . . . . . GEPRLSGGDSVSVVLMSPDGNLSSAEVSDH
Template Known Secondary structure  GTTTS

B
TT..........S
B
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TTS


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   450.........460......... 470.........480.........490.........
 
   83......90.........100.
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Query Sequence  ESAEAKLSGMSKMQWLNLP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QDGTYTVSYLPKGEGEHLLSVLICNQHIEGSPFKVMVKSGRSYGGVGLPMASFGGEGDGD
Template Known Secondary structure  SSS


S
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TTTTS
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   500.........510.........520.........530.........540.........550.........
 
   102.......110.... .....120.........130... ......140.........150..
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Query Sequence  . STEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQ. . . . . . TVEDSDGELQRRTCLVCSE
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Template Sequence  GQLCRPWGICVDKEGYVVVADRSNNRVQIFKPCGTFHHKFGTLGSRPGQFDRPAGVACDS
Template Known Secondary structure  T
BSS



TT

GGGT
TTS


BSSSTT
BSS
T
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   560.........570.........580.........590.........600.........610.........
 
   153......160.........170.........180. ........190.........200....
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Query Sequence  EQTPVGDIVVPPSKHAVSTLVRCVRSNAA. . . . . . . . VCSSSVVAVCDSRAMVWDVKGAT
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Template Sequence  QRRIIVADKDNHRIQIFTFDGQFLLKFGEKGTKNGQFNYPWDVAVNFEGKILVSDTRNHR
Template Known Secondary structure  T

GGGT
TT



BSSSTT
BSS
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GGGT
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   620.........630.........640.........650.........660.........670.........
 
   205....210.........220.........230.........240.........250.........260
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Query Sequence  . . . . QPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGS
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Template Sequence  VQLFGPDGTFLNKYGFEGALWKHFDSPRGVAFNQEGH. LVVTDFNNHRLLVIRPDCQSAR
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TT



GGGGGGG


TT

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   680.........690.........700.........710...... ...720.........730........
 
   261........270.........280.........290.........300.........310........
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Query Sequence  . TSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDI.
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Template Sequence  FLGSEGTGNGQFLRPQGVAVDQ. EDRIIVADSRNHRIQVFEP. . NGNFLCKFGTHGNGFG
Template Known Secondary structure 
SSSTTSS
T.TS
GGGT
T..TS

SSSTT
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   739740.........750.........760 .........770......... 780.........790.....
 
   319320.........330.........340..
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Query Sequence  . . . . . MSLKYLKLHSDIIATGGVDGSVVL
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Template Sequence  QMDRPSGIAVTP. DGVIVAVDFGNNRILM
Template Known Secondary structure  SS
T.T

GGGT
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   796...800....... ..810.........820...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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