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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank1Aligned Residues284
% Identity14%Templatec5a1vK_
PDB info PDB header:transport proteinChain: K: PDB Molecule:coatomer subunit alpha; PDBTitle: the structure of the copi coat linkage i
Resolution21.00 Å
Model Dimensions (Å)X:53.464 Y:50.617 Z:41.687

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80... ......90.........100 .........110.... ...
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Query Sequence  LAIGLNPLSTSGACVGLLTME. SAEAKLSGMSKMQWLNL. . PSTEPLSSVEWCEG. . SLL
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Template Sequence  KSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFHKQQPLFV
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   8.10.........20.........30.........40.........50.........60.......
 
   118.120.........130.... .....140.........150.........160.........170......
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Query Sequence  VGTSRGRIVVADVSPQT. VEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCV
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Template Sequence  SGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWI. . . . . . . . . . . . . . . . . . .
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   68.70.........80.........90.........100........
 
   177..180.........190.........200.........210.........220.........230......
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Query Sequence  RSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNS
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Template Sequence  . . . . . . . . . . LSASDDQTIRVWNWQSR. . . . . . . . . . . TCVCVLTGHNHYVMCAQFHPSE
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   109110.........120..... ....130.........140.......
 
   237..240.........250.........260... ......270..
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Query Sequence  DSVVLTGSYSGSLVFTDIRTKEGSTSK. . . . . . . . . . . . . . . . . . . . . . . . LSLPARRGC
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Template Sequence  D. LVVSASLDQTVRVWDISGLRKKNLSPGAVESDVRGITGVDLFGTTDAVVKHVLEGHDR
Template Known Secondary structure  S.TTSSSSSSS



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   148 .150.........160.........170.........180.........190.........200......
 
   273......280.........290.........300.. .......310.........320.........330.
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Query Sequence  MARCADFNTLLPFALATASSDGIISVFDCR. YPSTAVRTIPSLHGDIMSLKYLKLHSDII
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Template Sequence  GVNWAAFHP. TMPLIVSGADDRQVKIWRMNESKAWEVDTCRGHYNNVSCAVFHP. RQELI
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   207..210..... ....220.........230.........240.........250......... 260....
 
   332.......340.........350.........360.........370.........380.........390.
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Query Sequence  ATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTLTGLA
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Template Sequence  LSNSEDKSIRVWDMSKRTGVQTFRR. DHDRFWVLAAHP. . NLN. LFAAGHDGGMIVFKLE
Template Known Secondary structure  SSSTTT
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   265....270.........280......... 290.........300. ... .....310.........320
 
   392.
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Query Sequence  QE
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Template Sequence  RE
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   321.
 
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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