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Job Descriptionexo99____
Confidence53.39%DateMon Feb 25 17:28:45 GMT 2019
Rank387Aligned Residues283
% Identity11%Templatec4a2lD_
PDB info PDB header:transcriptionChain: D: PDB Molecule:two-component system sensor histidine kinase/response; PDBTitle: structure of the periplasmic domain of the heparin and heparan2 sulphate sensing hybrid two component system bt4663 in apo and3 ligand bound forms
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   102.......110.........120.........130.........140.........150.........160.
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Query Sequence  STEPLSSVEWCEGSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIV
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Template Sequence  HKTIASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPTKQIQAILQQSPTRIWVATEG
Template Known Secondary structure  T

TTSSS
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   172.......180.........190.........200.........210.........220.........230.
 
   162. ......170.........180.........190.........200.........210..
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Query Sequence  VP. . . . . . PSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVP. . .
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Template Sequence  AGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSF
Template Known Secondary structure  S
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SB
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GGGT
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   235....240.........250.........260.........270.........280.........290....
 
   213......220.........230.........240.........250....... ..260.......
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Query Sequence  . . . SVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTK. . EGSTSKLSLP
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Template Sequence  ASYSSNPVENGSLSQRSVRSIFMDSQGG. . MWLGTYFGGLNYYHPIRNRFKNIRNIPYKN
Template Known Secondary structure 
B
TTSTTSBSSS

TTS
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   295....300.........310.........320.. .......330.........340.........350..
 
   268.270.........280.........290.........300.........310.........320.......
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Query Sequence  ARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLH
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Template Sequence  SLSDNVVSCIVEDK. DKNLWIGTNDGGLNLYNPITQRFTSYTLQGIGSNNIKAVYVDE. K
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SS
T.T

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   353......360...... ...370.........380.........390.........400......... 410
 
   328.330.........340.........350.........360.........370.........380.......
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Query Sequence  SDIIATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTL
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Template Sequence  KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRF
Template Known Secondary structure  TTSSS
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   417..420.........430.........440.........450.........460.........470......
 
   388
Predicted Secondary structure 
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Query Sequence  T
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  N
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   477
 
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No model constructed - rank, confidence too low




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