Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.90%DateMon Feb 25 17:28:45 GMT 2019
Rank183Aligned Residues229
% Identity14%Templatec4cc9A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:protein vprbp; PDBTitle: crystal structure of human samhd1 (amino acid residues 582-626) bound2 to vpx isolated from sooty mangabey and human dcaf1 (amino acid3 residues 1058-1396)
Resolution2.47 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   101........110.... .....120.........130. ........140.........150.......
Predicted Secondary structure 







..




.


















Query SS confidence 













. .
















.

























Query Sequence  PSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVS. PQTVEDSDGELQRRTCLVCSEEQTPV
Query Conservation 



 








.. 




 









.
 

  
 
 
    


 
 

  
Alig confidence 













..
















.

























Template Conservation   
   

 
 




  
 


 

 
 


  

        
   
           
Template Sequence  EDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLL
Template Known Secondary structure 
SS
B
TTSSTTSTTT



SS



TTSS
Template Predicted Secondary structure 




























Template SS confidence 



























































   1091........1100.........1110.........1120.........1130.........1140.........1150
 
   158.160.........170......... 180.........190.........200.....
Predicted Secondary structure 





















............














Query SS confidence 





















. . . . . . . . . . . .

























Query Sequence  GDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . AAVCSSSVVAVCDSRAMVWDVKGATQ
Query Conservation   


  

 
  



 

  
............   









 










 
Alig confidence 





















............

























Template Conservation     
      
                                   
      
      
Template Sequence  LTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDIAHIYDIQTGNK
Template Known Secondary structure 
SSSSS
SSSTT
S
SSS
STTTTT

Template Predicted Secondary structure 






















Template SS confidence 



























































   1151........1160.........1170.........1180.........1190.........1200.........1210
 
   206...210.........220.........230.........240.........
Predicted Secondary structure 

























................
Query SS confidence 











































. . . . . . . . . . . . . . . .
Query Sequence  PVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSL. . . . . . . . . . . . . . . .
Query Conservation 

  
  
   
 

 


  
 















 



................
Alig confidence 

.......






















.










................
Template Conservation    ....... 
          
          . 
 
                       
Template Sequence  LL. . . . . . . TLFNPDLANNYKRNCATFNPTDD. LVLNDGVLWDVRSAQAIHKFDKFNMNI
Template Known Secondary structure  .......

TTT



TT



TTSS.TTTTTT




SS
Template Predicted Secondary structure  .......











.














Template SS confidence 



























































   1211. .......1220.........1230..... ....1240.........1250.........1260..
 
   250.........260.........270......... 280.........290..
Predicted Secondary structure  ...............



















..






Query SS confidence  . . . . . . . . . . . . . . .





























. .












Query Sequence  . . . . . . . . . . . . . . . VFTDIRTKEGSTSKLSLPARRGCMARCADF. . NTLLPFALATASS
Query Conservation  ...............








  



 

 

   
 



..

 

 





 
Alig confidence  ...............









....















..

.









Template Conservation            
 
            ....                    .          
Template Sequence  SGVFHPNGLEVIINTEIWDLRTFHL. . . . LHTVPALDQCRVVFNHTGTV. MYGAMLQSPF
Template Known Secondary structure 


TTSSTTTTT

....
GGGTT
TTSS.


Template Predicted Secondary structure 











....








.




Template SS confidence 



























































   1263......1270.........1280....... ..1290.........1300....... ..1310.......
 
   293......300.........310.........320.........330.. .......340...
Predicted Secondary structure 


















.........




Query SS confidence 







































. . . . . . . . .










Query Sequence  DGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIA. . . . . . . . . TGGVDGSVVLW
Query Conservation 









 
 
 



 



 
 





 





.........










Alig confidence 









.












.







.





.........










Template Conservation 
  
   
  .    
 
      .
  

 

. 
  

     
       
  


 
Template Sequence  GSSFRTFNAT. DYKPIATIDVKRN. IFDLCTDT. KDCYLAVIENQGSMDALNMDTVCRLY
Template Known Secondary structure  TT.T


SS.
S.SS
TTTT
Template Predicted Secondary structure 



.





.

.









Template SS confidence 



























































   1331........1340 .........1350... ......1360. ........1370.........1380.......
 
   344.
Predicted Secondary structure 
Query SS confidence 

Query Sequence  NL
Query Conservation 

Alig confidence 

Template Conservation 

Template Sequence  EV
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 

   1388.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D