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Job Descriptionexo99____
Confidence96.84%DateMon Feb 25 17:28:45 GMT 2019
Rank324Aligned Residues174
% Identity16%Templatec5cwwB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:nucleoporin nup82; PDBTitle: crystal structure of the chaetomium thermophilum heterotrimeric nup822 ntd-nup159 tail-nup145n apd complex
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   163......170.........180.........190.........200.........210... ..
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Query Sequence  PPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPS. . . . . . . VD
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Template Sequence  APGHKLFAPKPGPRRTIARRGTEIFVAC. GKQIRWGDLAQLKESWESRPSDDGAATAGYR
Template Known Secondary structure  SGGGGGT



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B
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   16...20.........30.........40... ......50.........60.........70....
 
   216...220.........230.........240.........250.........260.........
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Query Sequence  SSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPAR. . . . . .
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Template Sequence  IIKTP. . VADDIRQLVMSPNQD. FLAVLTS. HTVHICILPDSSHLHIQDTTPFKPKFWTL
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S.S



GGGGSTT

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S
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   108.110.. .......120....... ..130.... .....140.........150.........160...
 
   270.........280... ......290.........300.... .....310.
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Query Sequence  . . . . . . . RGCMARCADFNTLL. . PFALATASSDGIISVFDCRYP. . . . . STAVRTI. . . .
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Template Sequence  GPTTHVTSRSAVVSAVWHPLGVNGHALVTVTEDAIVRVWELSTADRWTFDAPTLAIDLKK
Template Known Secondary structure 
TTTSSTTS


TTBGGG
TT


TT
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   164.....170.........180.........190.........200.........210.........220...
 
   312..... ..320........ .330.........340.
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Query Sequence  . . . . . . . . . . . . . . . PSLHGD. . . . . . . . . IMSLKYLKLHS. . . . . . DIIATGGVDGSVV
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Template Sequence  LADATYLDQDFGVSTSATNKGFSPDAFDMEVAAACFPT. RDSGGWAPMTLWLAMTSGDVY
Template Known Secondary structure  T

STTS




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   224.....230.........240.........250.........260. ........270.........280..
 
   342
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Query Sequence  L
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Template Sequence  A
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   283
 
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No model constructed - rank, confidence too low




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