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Job Descriptionexo99____
Confidence43.01%DateMon Feb 25 17:28:45 GMT 2019
Rank391Aligned Residues204
% Identity12%Templatec4bp9A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:oligopeptidasse b; PDBTitle: oligopeptidase b from trypanosoma brucei with covalently bound2 antipain - closed form
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   114.....120.........130.........140.........150.........160.........170...
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Query Sequence  GSLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLV
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Template Sequence  GCVAPAPPEHALVAYSVDYC. . . . . . . . . . . . . . . . . . GDEVYSIRFVRDVVADKVEGTN
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TTT

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GGGSS



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   150.........160......... 170.........180.........190.
 
   174.....180.........190.. .......200.........210.........220.........
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Query Sequence  RCVRSNAAVCSSSVVAVCD. . . . SRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLF
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Template Sequence  GSVVWGPNAECFFYITKDASKRDNKVWRHIIGQP. . . . . . . . QSEDVCLYTDDDPLFSVG
Template Known Secondary structure  S


GGGT

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   192.......200.........210.........220..... ....230.........240...
 
   230.........240........ .250.........260.........270.........280.......
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Query Sequence  AQWVPNSDSVVLTGSYSGS. . LVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFAL
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Template Sequence  VGRSGDGKTLIICSMSSETSESHLLDLRKGVKHNTLEMVRPREKGVRYTVEMHGTDTLIV
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TTSSTTGGG
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   244.....250.........260.........270.........280.........290.........300...
 
   288. 290.........300.........310.........320.........330.........340...
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Query Sequence  AT. . . ASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLW
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Template Sequence  LTNKDKCVNGKVVLTKRSAPTDWGTVLIPHDDKVTIDDVAVFAKFAVLSGRRDGLTRVW
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   304.....310.........320.........330.........340.........350.........360..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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