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Job Descriptionexo99____
Confidence78.34%DateMon Feb 25 17:28:45 GMT 2019
Rank378Aligned Residues271
% Identity10%Templatec6eojA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:protein cft1; PDBTitle: polya polymerase module of the cleavage and polyadenylation factor2 (cpf) from saccharomyces cerevisiae
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   115....120.........130 .........140.
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Query Sequence  SLLVGTSRGRIVVADV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SPQTVEDSDGE
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Template Sequence  YLTILTFGGEIYQYRKLPQRRSRFYRNVTRNDLAITGAPDNAYAKGVSSIERIMHYFPDY
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TTS

SSSTT

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S


S
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S
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   798.800.........810.........820.........830.........840.........850.......
 
   142.......150.........160.........170.........180.........190.........200.
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Query Sequence  LQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVK
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Template Conservation       
   
  
  
           

          
     
         
    
Template Sequence  NGYSVIFVTGSVPYILIKEDDSTPKIFKFGNIPLVSVTPWSERSVMCVDDIKNARVYTLT
Template Known Secondary structure  SS


BSS


TTS


SS
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   858.860.........870.........880.........890.........900.........910.......
 
   202.. .....210.........220.........230.........240......
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Query Sequence  GAT. QPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYS. . . . . . . . . . . . . .
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Template Sequence  TDNMYYGNKLPLKQIKISNVLDDYKTLQKLVYHERAQLFLVSYCKRVPYEALGEDGEKVI
Template Known Secondary structure 
SS

TTS




SS



STTTT
B

B


B
SSSSB
T
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   918.920.........930.........940.........950.........960.........970.......
 
   247..250.........260.........270.........280.... ....
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Query Sequence  . . . . . . . . . . . . . GSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLP. . . . . FALA
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Template Conservation                 
 
        
    
   
   
   
 
            

Template Sequence  GYDENVPHAEGFQSGILLINPKSWKVIDKIDFPKNSVVNEMRSSMIQINSKTKRKREYII
Template Known Secondary structure  T

SSS


B

B
TTTT

TT

B
SSTTT
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B

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   978.980.........990.........1000.........1010.........1020.........1030.......
 
   289290. ........300. ........310.........320.......
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Query Sequence  TAS. . . . . . . . . SDGIISVFDC. . . . . . . . . . . . RYPSTAVRTIPSLHGDIMSLKYLKLH
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Template Sequence  AGVANATTEDTPPTGAFHIYDVIEVVPEPGKPDTNYKLKEIFQEE. VSGTVSTVCEV. . S
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SSS





SSSSS

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..T
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   1038.1040.........1050.........1060.........1070.........1080.. .......1090... .
 
   328.330.........340.........350.........360.........370.........380.......
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Query Sequence  SDIIATGGVDGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTL
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Template Sequence  GRFMISQSQ. . KVLVRDIQEDNSV. IPVAFLDIPVFVTDSKS. . FGNLLIIGDAMQGFQF
Template Known Secondary structure  T
SS..
TTS
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SS
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   1095....1100... ......1110...... ...1120.........1130... ......1140.........
 
   388.390...
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Query Sequence  TGLAQE
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Template Conservation 
     
Template Sequence  IGFDAE
Template Known Secondary structure 
SS
Template Predicted Secondary structure 

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   1150.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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