Return to main results Retrieve Phyre Job Id

Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank131Aligned Residues275
% Identity13%Templatec5tf2A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:prolactin regulatory element-binding protein; PDBTitle: crystal structure of the wd40 domain of the human prolactin regulatory2 element-binding protein
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   66...70.........80..... ....90.........100.........110..
Predicted Secondary structure 















.............















Query SS confidence 



















. . . . . . . . . . . . .


























Query Sequence  GLNPLSTSGACVGLLTMESA. . . . . . . . . . . . . EAKLSGMSKMQWLNLPSTEPLSSVEWC
Query Conservation   
  

 

  
 


 


.............
  



 
 








 






Alig confidence 



















.............


























Template Conservation 
        
   

  
  
       
 
 
  
             
      
   
Template Sequence  PLYALQVDPSTGLLIAAGGGGAAKTGIKNGVHFLQLELINRLSASLLHSHDTETRATMNL
Template Known Secondary structure 
TTTT



SSS
S



TT

Template Predicted Secondary structure 
























Template SS confidence 



























































   15....20.........30.........40.........50.........60.........70....
 
   113. .....120.........130 .........140.........150.........160.
Predicted Secondary structure 

..



.........























Query SS confidence 

. .















. . . . . . . . .






























Query Sequence  EG. . SLLVGTSRGRIVVADV. . . . . . . . . SPQTVEDSDGELQRRTCLVCSEEQTPVGDIV
Query Conservation 

.. 




 








.........

 

  
 
 
    


 
 

  
 


Alig confidence 

..















.........






























Template Conservation       
 
 
 
  
 

                         
  
 

 

  
    
Template Sequence  ALAGDILAAGQDAHCQLLRFQAHLELRVENLQAVQTDFSSDPLQKVVCFNHDNTLLATGG
Template Known Secondary structure  TTTT





SSS


TTSS
Template Predicted Secondary structure 


































Template SS confidence 



























































   76...80.........90.........100.........110.........120.........130.....
 
   162.......170.........180........ .190.........200.........
Predicted Secondary structure 






















............













Query SS confidence 


























. . . . . . . . . . . .




















Query Sequence  VPPSKHAVSTLVRCVRSNAAVCSSSVV. . . . . . . . . . . . AVCDSRAMVWDVKGATQPVHT
Query Conservation    

 
  



 

  
   





............



 










 

  
Alig confidence 


























............




















Template Conservation   
  
                                                       
Template Sequence  TDGYVRVWKVPSLEKVLEFKAHEGEIEDLALGPDGKLVTVGRDLKASVWQKDQLVTQLHW
Template Known Secondary structure  TT
TTT



SS

GGG
TTS
TT
T
Template Predicted Secondary structure 

































Template SS confidence 



























































   174.....180.........190.........200.........210.........220.........230...
 
   210..... ....220.........230.........240.........250.........260.
Predicted Secondary structure 





........























Query SS confidence 





. . . . . . . .













































Query Sequence  WVPSVD. . . . . . . . SSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGST
Query Conservation 
  
  ........ 
 

 


  
 















 












  
Alig confidence 





........





















.




















..
Template Conservation                                      .                     ..
Template Sequence  QEPTFSSTPYRYQACRFGQVPDQPAGLRLFTVQIPH. KRLRQPPPCYLTAWDGSNFLP. .
Template Known Secondary structure  T

TT
SS

TT
TT
S.S

SS



TTT

..
Template Predicted Secondary structure 
















.










..
Template SS confidence 



























































   234.....240.........250.........260......... 270.........280.........290
 
   262.......270.........280.........290.........300.........310.........320.
Predicted Secondary structure 































Query SS confidence 



























































Query Sequence  SKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSL
Query Conservation 


 

 

   
 





 

 





 









 
 
 



 



 
 

Alig confidence  ..

















.






































Template Conservation  ..                
 .    
  
  

 
 


  
   
      
   

 
Template Sequence  . . LRTKSCGHEVVSCLDVSE. SGTFLGLGTVTGSVAIYIAFSLQCLYYVREAHGIVVTDV
Template Known Secondary structure  ..

SS

T.TSSTTS
TTTTTTSSSS
Template Predicted Secondary structure  ..













.















Template SS confidence 



























































   293......300.........310 .........320.........330.........340.........
 
   322.......330 .........340.......
Predicted Secondary structure 





...........







Query SS confidence 








. . . . . . . . . . .
















Query Sequence  KYLKLHSDI. . . . . . . . . . . IATGGVDGSVVLWNLRS
Query Conservation 



 



...........
















Alig confidence 



.



...........
















Template Conservation   
 
.               
 
 
 
 

 
  
  
Template Sequence  AFLP. EKGRGPELLGSHETALFSVAVDSRCQLHLLPS
Template Known Secondary structure 

.SSTTTTSS
TTS


Template Predicted Secondary structure 

.



















Template SS confidence 




































   350... ......360.........370.........380.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions

Phyre2 is part of Genome3D