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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank5Aligned Residues359
% Identity18%Templatec2j04B_
PDB info PDB header:transcriptionChain: B: PDB Molecule:ydr362cp; PDBTitle: the tau60-tau91 subcomplex of yeast transcription factor2 iiic
Resolution3.2 Å
Model Dimensions (Å)X:57.127 Y:63.911 Z:54.594

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NESIIQVPLYVSTSAWR. KEVQLRGLLRNHPSIIAHSDILPP. ATTAKVFSTAQLAAHHR
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Template Sequence  FKNIQPDSPYFVCLDPPCKKESAYNKVIGDKNRTVYHEINKTEFENMIKLRTKRLKLLIG
Template Known Secondary structure  GGGGSTTSTT





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Query Sequence  ENVLAIGLN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PLSTSGACVGLL. . . TMES
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Template Sequence  EVDAEVSTGDKIEFPVLANGKRRGFIYNVGGTDIAWLNIEENTDIGKDIQYLAVAVSQSS
Template Known Secondary structure  TTT
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   260.........270.........280.........290.........300.........310.........
 
   85.... 90.........100.........110..... ....120.........130.
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Query Sequence  AEAKL. . . . . SGMSKMQWLNLPSTEPLSSVEWCEGS. . . . . . . . LLVGTSRGRIVVADVS
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Template Sequence  CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII
Template Known Secondary structure  TTT




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   340.........350.........360.........370.........380.........390.........
 
   132.......140.........150.........160.........170.........180.........190.
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Query Sequence  PQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVC
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Template Sequence  DNATDVHVFKMCEKPSLTLSLADSLITTFDFLS. . . . . . . . . . . . . . . . . . PTTVVCGFK
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   400.........410.........420.........430.. .......440.
 
   192.......200.........210.........220.........230. ........240.........
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Query Sequence  DSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQ. . WVPNSDSVVLTGSYSGSL
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Template Sequence  NGFVAEFDLTDPEVPS. . . . . . . . . . FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF
Template Known Secondary structure  TSTTB
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   442.......450....... ..460.........470.........480.........490.
 
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Query Sequence  VFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVR
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Template Sequence  YIFNPKDIAT. . TKTTVSRFRGSNLVPVVYCP. QIYSYIYSDGASSLRAVPSR. AAFAVH
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   492.......500. ........510.........520. ........530.........540. ......
 
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Query Sequence  TIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNL. RSLPT. . . . . YRVGRAQY. . . . .
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Template Sequence  PLVSRETTITAIGVSR. LHPMVLAGSADGSLIITNAARRLLHGIQKSLRLWKWDYSIKDD
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   548.550.........560... ......570.........580.........590.........600......
 
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Query Sequence  . . . . . . . . . . . . . KCPVFDLITTPWSV. EQHVIGVTCGGELTLTGLAQE
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Template Sequence  KYRIDSSYEVYPHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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