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Job Descriptionexo99____
Confidence99.94%DateMon Feb 25 17:28:45 GMT 2019
Rank104Aligned Residues353
% Identity10%Templatec4noxA_
PDB info PDB header:translationChain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit b; PDBTitle: structure of the nine-bladed beta-propeller of eif3b
Resolution2.72 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20 .........30.........40.........50.........60
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Query Sequence  NESIIQVPLYVSTSAWRKE. VQLRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRE
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Template Sequence  RDQFVMYRGDTVGVFWNNEKDQPENIVDRQHWTETFVQWSPLGTYLTSVHAQGVQLWGGA
Template Known Secondary structure 

TT

TTS


SS
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   168.170.........180.........190.........200.........210.........220.......
 
   61..... ...70.........80.... .....90..
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Query Sequence  NVLAIG. . . . . . LNPLSTSGACVGLLTMES. . . . . . . . . . . . . . . . . . . . . . AEAKLSGM
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Template Sequence  SWSRLRRFPHPFVNLVAFSPGEKYLVTWSNRPIQIPDSGHPVLTLDDDGKNYIIWDIETA
Template Known Secondary structure  TT

TT


TTSS
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TT

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GGGTT

TTTT
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   228.230.........240.........250.........260.........270.........280.......
 
   93......100.........110.... .....120.........130...... ...140.........
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Query Sequence  SKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCLV
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Template Sequence  RPLRSFAQQDIFPWPVFKWSADDKYVARLNQGTSISIYELPKMNLLDKQAVKIEGVMDFE
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S
SS
TTSSTTTTTTTGGGS

TT

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   288.290.........300.........310.........320.........330.........340.......
 
   150.........160... ......170.........180
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Query Sequence  CSEEQTPVGDIVVP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . PSKHAVSTLVRCVRSNA
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Template Sequence  WAPATVQREGVKTYEQLFCFWTPEIGNNPARVGLMSIPSKQIVRTLNLFSVSDVKMHWQS
Template Known Secondary structure 
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TT

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BTTB
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   361........370.........380.........390.........400.........410.........420
 
   181........ 190.........200.........210.........220.........230..
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Query Sequence  AVCSSSVVA. . . . . . . . VCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQW
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Template Sequence  EGTYLCVKVDRHSKSKKSQATTLEIFRVKEKG. . . . . . . . . . VPVEVVDTIKDTVINFAW
Template Known Secondary structure  TSS
TT
STTSTT..........

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   421........430.........440.........450.. .......460.........470
 
   233......240.........250.........260. ........270.........
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Query Sequence  VPNSDSVVLTGSYSGSLVFTDIRTKEGST. . . . . . . . . . . . . SKLSLPARRGCMARCADF
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Template Sequence  EPKGD. RFVIITTPEPVGATAVPPKTSVSFFCPELKKGNQVGSFKHLRTLEKKNHNAIYW
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TTSS.



SS

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   471.... ....480.........490.........500.........510.........520.........
 
   280.........290. ........300.........310. ........320...
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Query Sequence  NTLLPFALATAS. . . . SDGIISVFDCRYPSTAVRTI. . . . . . . . . . . . PSLHGDIMSLKY
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Template Sequence  SP. KGRFVVIATVHNTQSSDLEFWDLD. FDGEKPENEKDLAACLQLMGTGDHYGITDVEW
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S.SSS

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SB.
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GGGTTBS
B

TT

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   530. ........540.........550..... ....560.........570.........580.......
 
   324.....330...... ...340.........350.........360.........370..
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Query Sequence  LKLHSDIIATGGV. . . . . . DGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTPWSV
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Template Sequence  DP. SGRYVATWASAWKHTMENGYHLYDFKGELLREEHI. . . . EKFKQWQWRPRPP
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T.TSS
TTT

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   588. 590.........600.........610.........620.... .....630.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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