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Job Descriptionexo99____
Confidence99.91%DateMon Feb 25 17:28:45 GMT 2019
Rank165Aligned Residues246
% Identity11%Templatec4ggaA_
PDB info PDB header:cell cycleChain: A: PDB Molecule:cell division cycle protein 20 homolog; PDBTitle: structural analysis of human cdc20 supports multi-site degron2 recognition by apc/c
Resolution2.04 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   101........110.........120.........130...... ...140.........150.......
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Query Sequence  PSTEPLSSVEWCEGSLLVGTSRGRIVVADVSPQTVE. . . DSDGELQRRTCLVCSEEQTPV
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Template Sequence  RNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL
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   182.......190.........200.........210.........220.........230.........240.
 
   158.160.........170.... .....180.........190.........200.........210......
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Query Sequence  GDIVVPPSKHAVSTLVR. CVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDS
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Template Sequence  AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH
Template Known Secondary structure  TTS
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   242.......250.........260.........270.........280.........290.........300.
 
   217..220.........230.........240.........250.........260......
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Query Sequence  SKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . . . . . . . .
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Template Sequence  VATLSGHSQEVCGLRWAPDGR. HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA
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   302.......310.........320.. .......330.........340.........350.........360
 
   267..270.........280.........290
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFALATA
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Template Sequence  VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHY. KELISGHG
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   361........370.........380.........390.........400.........410. ........
 
   291........300.........310.........320.........330.........340.........350
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Query Sequence  SSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPT
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Template Sequence  FAQNQLVIWKYP. TMAKVAELKGHTSRVLSLTMSP. DGATVASAAADETLRLWRCFELDP
Template Known Secondary structure  TTT

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   420.........430. ........440.........450... ......460.........470.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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