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Job Descriptionexo99____
Confidence99.91%DateMon Feb 25 17:28:45 GMT 2019
Rank158Aligned Residues269
% Identity11%Templatec3jb9K_
PDB info PDB header:rna binding protein/rnaChain: K: PDB Molecule:pre-mrna-splicing factor prp5; PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
Resolution3.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8990.........100.........110.... .....120.........130...... ...140.....
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Query Sequence  LSGMSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRR
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Template Sequence  WHAPWTLMRVISGHLGWVRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATV
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   149150.........160.........170.........180.........190.........200........
 
   146...150.........160.........170....... ..180.........190.........200...
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Query Sequence  TCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVR. . SNAAVCSSSVVAVCDSRAMVWDVKGA
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Template Sequence  RGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTAGRD
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   209210.........220.........230.........240.........250.........260........
 
   204.....210.........220.........230.........240.........250.........260...
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Query Sequence  TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSK
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Template Sequence  AVARVWDMRTRQNVHVLSGHKSTVASLAVQEFDP. QVVTGSMDSTIRLWDLAAGKTLTTL
Template Known Secondary structure  TTTTT

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   269270.........280.........290.........300.. .......310.........320.......
 
   264.. ...270.........280.......
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Query Sequence  LSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFNTLLPFAL
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Template Sequence  THHKKTVRALSLHPDEFTFASGSSDNIKHWKFPEGAFMGNFEGHNAIVNTLSIN. SDNVM
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   328.330.........340.........350.........360.........370.........380. .....
 
   288.290.........300.........310... ......320.........330.........
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Query Sequence  ATASSDGIISVFDCRYPSTAVRTIPS. . . . . . . . LHGDIMSLKYLKLHSDIIATGGVDGS
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Template Sequence  FSGADNGSMCFWDWK. SGHKYQELQSVVQPGSLDSEAGIFASSFDK. TGLRLITCEADKS
Template Known Secondary structure  BTTS
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   387..390.........400. ........410.........420.........430. ........440....
 
   340.........350.........360.
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Query Sequence  VVLWNLRSLPTYRVGRAQYKCP
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Template Sequence  VKIYKQVDNATPETHPNLPWTP
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   445....450.........460......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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