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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank28Aligned Residues247
% Identity14%Templatec3mkqA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   94.....100.........110.... .....120.........130. ........140.........150
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Query Sequence  KMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVS. PQTVEDSDGELQRRTCLVC
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Template Sequence  DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF
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   4.....10.........20.........30.........40.........50.........60...
 
   151........160.........170.........180.........190.........200.........210
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Query Sequence  SEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTW
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Template Sequence  IAR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . KNWIIVGSDDFRIRVFNYNTG. . . . . . .
Template Known Secondary structure  GG.............................GTTTSTTT
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   64.. ...70.........80.......
 
   211........220.........230.........240.........250.........260.........270
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Query Sequence  VPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSLPARR
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Template Sequence  . . . . EKVVDFEAHPDYIRSIAVHPTKP. YVLSGSDDLTVKLWNWENNW. . . ALEQTFEGH
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   88.90.........100.........110 .........120.........130 .........
 
   271........280.........290.........300..
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Query Sequence  GCMARCADFNTLLPFALATASSDGIISVFDCR. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP
Template Known Secondary structure  SS
TTTTSTT
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   140.........150.........160.........170.........180.........190.........
 
   303......310.........320.........330.........340......
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Query Sequence  . . . . . . . . . . . . . . . . YPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLR
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Template Sequence  YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP. TLPIIISGSEDGTLKIWNSS
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TTSTTTT

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   200.........210.........220.........230........ .240.........250........
 
   347..350.........360.........370.........380......
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Query Sequence  SLPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELT
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Template Sequence  TYKVEKTLNV. GLERSWCIATHPTGRKNYIASGFDNGFTV
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   259260........ .270.........280.........290.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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