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Job Descriptionexo99____
Confidence99.83%DateMon Feb 25 17:28:45 GMT 2019
Rank200Aligned Residues335
% Identity14%Templatec1n6dE_
PDB info PDB header:hydrolaseChain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.........80.........90.........100.........110.... .....120..
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Query Sequence  LNPLSTSGACVGLLTMESAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . . . SLLVGTSR
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Template Sequence  FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREG
Template Known Secondary structure 
GGGTTTTSSS



S

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   325....330.........340.........350.........360.........370.........380....
 
   123......130.........140.........150.........160.........170.........180..
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Query Sequence  GRIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAV
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Template Sequence  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT





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   385....390.........400.........410.........
 
   183......190.........200.........210.........220.........230.........240..
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Query Sequence  CSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLT
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Template Sequence  . . . . VVANDRFEIMTVDLETG. . . . . . . . . . . KPTVIERSREAMITDFTISDNSRFIAYG
Template Known Secondary structure  ....TTSTTT
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   420.........430...... ...440.........450.........460....
 
   243......250.........260.........270.........280.........290...
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Query Sequence  . . . . . . . . . GSYSGSLVFTDIRTKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSD
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Template Sequence  FPLKHGETDGYVMQAIHVYDMEGRK. . . . . IFAATTENSHDYAPAFDA. DSKNLYYLSYR
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SSTT
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   465....470.........480......... 490.........500....... ..510........
 
   294.....300..
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Query Sequence  GIISVFDCR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI
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SSSS


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GGG


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TTGGGT

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   519520.........530.........540.........550.........560.........570........
 
   303......310.........320.........330.........340.........350........
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Query Sequence  . . . . YPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLRSLPTYRVGRAQY
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Template Sequence  NVDPGDYRMIIPLESSILIYSVPVHGE. FAAYYQGAPEKGVLLKYDVKTRKVTEVKNN. .
Template Known Secondary structure  S


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S.S




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   579580.........590.........600..... ....610.........620.........630.....
 
   359360.........370.........380.........390 .........400...... .
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Query Sequence  KCPVFDLITTPWSVEQHVIGVTCGGELTLTGL. . . . . . . . . AQEAMATLAVPVTERL. . S
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Template Sequence  . . . LTDLRLSA. . DRKTVMVRKDDGKIYTFPLEKPEDERTVETDKRPLVSSIHEEFLQMY
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S..SS
TTS
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   636...640... ......650.........660.........670.........680.........690
 
   408.410 .........420.........430.........440.........450......
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Query Sequence  KPS. . . . GRRQEDKTAANEATELMEREKYGVGLLYSRRLREAYEVIVDCATKR
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Template Sequence  DEAWKLARDNYWNEAVAKEISERIYEK. YRNLVPLCKTRYDLSNVIVEMQGEY
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S
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   691........700.........710....... ..720.........730.........740..
 
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No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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