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Job DescriptionNg99_____
Confidence100.00%DateTue Mar 12 12:31:53 GMT 2019
Rank27Aligned Residues368
% Identity14%Templatec1nr0A_
PDB info PDB header:structural proteinChain: A: PDB Molecule:actin interacting protein 1; PDBTitle: two seven-bladed beta-propeller domains revealed by the2 structure of a c. elegans homologue of yeast actin3 interacting protein 1 (aip1).
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   35....40.........50.........60.........70.........80.........90....
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Query Sequence  SGLHDGGQNVTKSLLRSDITIEDSSCICVNNQQNYIVQAGVGGRFQTIKVIQKSRSDAKQ
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Template Sequence  RTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY.
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TT





TTSSTTTT
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   15....20.........30.........40.........50.........60.........70...
 
   95....100.........110.........120.........130.........140.... .....150..
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Query Sequence  FTNTTTVLDKKDSPIPNTNIFSPQFSGKFPGPIHCMDMLNQYLLIGSSNG. . ECYVKTMD
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Template Sequence  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL
Template Known Secondary structure  TTSSSSTT


SSS

TTS


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   74.....80.........90.........100.........110.........120.........130...
 
   153......160.........170.........180 .........190.... .....200...
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Query Sequence  VASEKNNCLLDDSPNSIVKCQTFSHSKL. KKSDQSSILTTPSP. . . . . . . . EQYTFSTKI
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Template Conservation                               
 
                            
Template Sequence  FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV
Template Known Secondary structure  TTT

B
B




SS

SSSS
TTS
TTTB


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   134.....140.........150.........160.........170.........180.........190...
 
   204.....210.........220.........230.........240. ........250.......
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Query Sequence  NNVQIERSENPKNFHTLENNRLHIWSFEKDDAPIQTIQ. . . . . . GSRSPLWCSSWSSFNS
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Template Sequence  HSVRYNPD. GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP. DG
Template Known Secondary structure 
TT.SSTTS
TTT


B
TTSSS
SSSS

T.TS
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   194.....200. ........210.........220.........230.........240......... 250.
 
   258.260.........270.........280......
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Query Sequence  NLILIGGVSKAVKLIDTRSMGIANANIQF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP
Template Known Secondary structure  STTSTTTT

SSGGG

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   252.......260.........270.........280.........290.........300.........310.
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT
Template Known Secondary structure  TTT


SS

TTSSTTS
TTT


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   312.......320.........330.........340.........350.........360.........370.
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY
Template Known Secondary structure 
TTS
TTT
SSSSSS
TTS


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TTSS
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   372.......380.........390.........400.........410.........420.........430.
 
   287..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SHC
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Template Conservation                                                              
Template Sequence  KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP
Template Known Secondary structure  STT
SS

TTS
TTSTT
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   432.......440.........450.........460.........470.........480.........490.
 
   290.........300.........310.........320.... .....330.........340.......
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Query Sequence  DAITDVQWSPLLPYWFASCSTDGLIYVWDQRYAAE. . PIKILEGHNNVVKKISWSRSHVE
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Template Sequence  AEITSVAFSN. NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP. DNV
Template Known Secondary structure  S

T.TSSTTS
GGGTTS







SS

T.TSS
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   492.......500. ........510.........520.........530.........540...... ...
 
   348.350.........360.........370.........380.........390.........400.......
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Query Sequence  VLASGGVDHSVKLWSLRTEPHHVLTTLDKGFFSDSILGLSFSNVTPNQLFANSASGELLA
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Template Sequence  RLATGSLDNSVIVWNMNKPSDHPII. . IKGAHAMSSVNSVIWL. NETTIVSAGQDSNIKF
Template Known Secondary structure  TTS
TT
TTS

..TTSSTTS
.TTTTS
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   550.........560.........570.... .....580.........590 .........600......
 
   408.410
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Query Sequence  ISV
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Template Sequence  WNV
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   607..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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