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Job Descriptionexo99____
Confidence99.96%DateMon Feb 25 17:28:45 GMT 2019
Rank50Aligned Residues308
% Identity15%Templatec2pm9A_
PDB info PDB header:protein transportChain: A: PDB Molecule:protein transport protein sec31; PDBTitle: crystal structure of yeast sec13/31 vertex element of the copii2 vesicular coat
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   34.....40.........50.. .......60.........70.........80.........90..
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Query Sequence  IAHSDILPPATTAKVFSTA. QLAAHHRENVLAIGLNPLSTSGACVGLLTMESAEAKLSGM
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Template Sequence  TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS. . . . . . . . . . .
Template Known Secondary structure  S
B

B
SSSS
B
BSS


SS






SSSGGG
S
S

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   10.........20.........30.........40.........50........
 
   93......100.........110.... .....120.........130.........140.........150
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Query Sequence  SKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCLVC
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Template Sequence  . . . . . . . LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMA. . . . . . . . .
Template Known Secondary structure  .......


SS

SSSS
SSS


SSTTS


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   5960.........70.........80.........90.........100..
 
   151........160.........170.........180.........190.........200.........210
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Query Sequence  SEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTW
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Template Sequence  . . . . . . . . . . . . . . RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY
Template Known Secondary structure  ..............


SSS



SSSTTB
SSS
B
BTTTTSS
TTT
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   103......110.........120.........130.........140........
 
   211........220.........230.........240.........250.........260......
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Query Sequence  VPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . .
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Template Sequence  TPLT. . PGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS
Template Known Secondary structure 

B
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S

SS




SS
TTSSSS
TTTT




SS
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   149150.. .......160.........170.........180.........190.........200......
 
   267..270.........280
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADFN
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Template Sequence  GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC
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SS
TT

SSS



TTSTTS
SB


S

SS

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   207..210.........220.........230.........240.........250.........260......
 
   281........290.........300.........310.........320.........330.........340
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Query Sequence  TLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSV
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Template Sequence  HQDEHLLLSSGRDNTVLLWNPE. SAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI
Template Known Secondary structure  SS
SS
SSS
SS.S


SSS




TT
TT

SSS
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   267..270.........280........ .290.........300.........310.........320.....
 
   341...... ..350.........360.........370.........380.......
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Query Sequence  VLWNLRS. . . . . . . . . . . . . LPTYRVGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTL
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Template Sequence  EVQTLQNLTNTLDESKEKPSVFHLQAPTW. YGEPSPAAHWAF. . GGKLVQITPDGKGVSI
Template Known Secondary structure  S




SS



S


SS




ST.T


S


T..TT
B
TTSS
B

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   326...330.........340.........350.... .....360...... ...370.........380..
 
   388
Predicted Secondary structure 
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Query Sequence  T
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Template Conservation   
Template Sequence  T
Template Known Secondary structure  B
Template Predicted Secondary structure 
Template SS confidence 
   405
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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