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Job Descriptionexo99____
Confidence99.92%DateMon Feb 25 17:28:45 GMT 2019
Rank153Aligned Residues251
% Identity8%Templatec6cvzB_
PDB info PDB header:transferaseChain: B: PDB Molecule:e3 ubiquitin-protein ligase rfwd3; PDBTitle: crystal structure of the wd40-repeat of rfwd3
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   92.......100.........110.... .....120.........130.........140........
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Query Sequence  MSKMQWLNLPSTEPLSSVEWCEG. . . SLLVGTSRGRIVVADVSPQTVEDSDGELQRRTCL
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Template Sequence  TANMSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGRPVWSC
Template Known Secondary structure  TTT


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   484.....490.........500.........510.........520.........530.........540...
 
   149150... ......160.........170......... 180...
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Query Sequence  VCSEE. QTPVGDIVVPPSKHAVSTLVRCVRSN. . . . . . . . . . . . . . . . . . . . . . . . AAVC
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Template Sequence  CWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASAAFPYG
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   546...550.........560.........570.........580.........590.........600.....
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  SSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTG
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Template Sequence  GVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKN. HTTIR
Template Known Secondary structure  SS

TTS

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TTTTSSS.S


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   606...610.........620.........630.........640.........650......... 660....
 
   244.....250.........260...... ...270.........280.........290.......
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Query Sequence  SYSGSLVFTDIRTKEGSTSKLSL. . . . . . PARRGCMARCADFNTLLPFALATASSDGIIS
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Template Sequence  SVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKTKNAIFQSPEN. DGNILVCTGAANSAL
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   665....670.........680.........690.........700........ .710.........720...
 
   298.300.........310.........320.........330.........340......
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Query Sequence  VFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSVVLWNLR
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Template Sequence  LWDAA. SGSLLQDLQTDQPVLDICPFEV. NRNSYLATLTEKMVHIYKWE
Template Known Secondary structure  TT.T


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   728.730.. .......740.........750.... .....760.........770....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Lawrence Kelley, Michael Sternberg 
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