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Job Descriptionexo99____
Confidence100.00%DateMon Feb 25 17:28:45 GMT 2019
Rank30Aligned Residues333
% Identity17%Templatec5thaA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:gem-associated protein 5; PDBTitle: gemin5 wd40 repeats in complex with a guanosyl moiety
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20 .........30.........40.........50.........60...
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Query Sequence  IIQVPLYVSTSAWRKE. VQLRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRENVL
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Template Sequence  CATSSDDGTVKIWDVETKTVVTEHALHQHTISTLHWSPR. . . . . . . . . . VKDLIVSGDEK
Template Known Secondary structure  TTS
TTTT



S

SS..........STTTT
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   82.......90.........100.........110.........120 .........130.
 
   64.....70.........80.........90........ .
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Query Sequence  AIGLNPLSTSGACVGLLTMESAEAKLSGMSKMQWL. . . . . . . . . . . . . . . . . . . . . . . . N
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Template Conservation   
 

                 
                                     
Template Sequence  GVVFCYWFNRNDSQHLFIEPRTIFCLTCSPHHEDLVAIGYKDGIVVIIDISKKGEVIHRL
Template Known Secondary structure  SGGGT

SS

SS
TTTTS
GGGTT
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   132.......140.........150.........160.........170.........180.........190.
 
   100.........110.... .....120.........130... .....
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Query Sequence  LPSTEPLSSVEWCEG. . . . . SLLVGTSRGRIVVADVSPQ. . . . . . . . . . . . . . . . TVEDS
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Template Sequence  RGHDDEIHSIAWCPLPGEGCYLATGSKDQTIRIWSCSRGRGVMILKLPFLKRRGGGIDPT
Template Known Secondary structure 



S

SSS

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TTSTTTT






SS


TT
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   192.......200.........210.........220.........230.........240.........250.
 
   139140.........150.........160.........170.....
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Query Sequence  DGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVRC. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKERLWLTLHWPSNQPTQLVSSCFGGELLQWDLTQSRRKYTLFSASSEGQNHSRIVFNLC
Template Known Secondary structure 
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TT
TT
GGG
TT




TTSSSSS
S
SS
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   281........290.........300.........310.........320.........330.........340
 
   176...180.........190.........200...
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Query Sequence  VRSNAAVCSSSVVAVCDSRAMVWDVKGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation              
                                               
Template Sequence  PLQTEDDKQLLLSTSMDRDVKCWDIATLECSWTLPSLGGFAYSLAFSSVDIGSLAIGVGD
Template Known Secondary structure  BTT

TTSTTTT
BSS

SSSTTTT
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   342.......350.........360.........370.........380.........390.........400.
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  GMIRVWNTLSIKNNYDVKNFWQGVKSKVTALCWHPTKEGCLAFGTDDGKVGLYDTYSNKP
Template Known Secondary structure  S
TT
SS
TT

TTT
S

SSSTTTTS
TTSSS
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   402.......410.........420.........430.........440.........450.........460.
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation             
                       
                        
Template Sequence  PQISSTYHKKTVYTLAWGPPVPPMSLSLALYSCGGEGIVLQHNPWKLSGEAFDINKLIRD
Template Known Secondary structure 

SS

SS



TT

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TTS

TT
TTS

T
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   462.......470.........480.........490.........500.........510.........520.
 
   204.....210. ........220.........230....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . TQPVHTWV. PSVDSSKNSPNEQEPLLFAQWVP
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Template Conservation                                                      
     
 
Template Sequence  TNSIKYKLPVHTEISWKADGKIMALGNEDGSIEIFQIPNLKLICTIQQHHKLVNTISWHH
Template Known Secondary structure  T

S




TTSSTTS
TTTT



S


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   529530.........540.........550.........560.........570.........580........
 
   235. ...240.........250...... ...260.........270.........280
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Query Sequence  NS. . . . . . DSVVLTGSYSGSLVFTDIRT. . . . . . . . KEGSTSKLSLPARRGCMARCADFN
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Template Sequence  EHGSQPELSYLMASGSNNAVIYVHNLKTVIESSPESPVTITEPYRTLSGHTAKITSVAWS
Template Known Secondary structure  S
SSSGGGGGSSS

T

SS

S
S


SS

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   589590.........600.........610.........620.........630.........640........
 
   281........290.........300.........310.........320.........330.........340
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Query Sequence  TLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIATGGVDGSV
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Template Sequence  PHHDGRLVSASYDGTAQVWDAL. REEPLCNFRGHQGRLLCVAWSPLDPDCIYSGADDFCV
Template Known Secondary structure  TTSSSTTS
TT.TT


SS

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TTTTS
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   649650.........660.........670 .........680.........690.........700.......
 
   341.......
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Query Sequence  VLWNLRSL
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Template Conservation   

     
Template Sequence  HKWLTSMQ
Template Known Secondary structure  GGG
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   708.710.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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