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Job Descriptionexo99____
Confidence99.89%DateMon Feb 25 17:28:45 GMT 2019
Rank187Aligned Residues312
% Identity13%Templatec3greA_
PDB info PDB header:signaling protein,protein bindingChain: A: PDB Molecule:serine/threonine-protein kinase vps15; PDBTitle: crystal structure of saccharomyces cerevisiae vps15 wd repeat domain
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100.. .......110.... .....
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Query Sequence  AIGLNPLSTSGACVGLLTMESAEAKLSGMSKMQWLNLPS. TEPLSSVEWCEG. . . SLLVG
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Template Sequence  TFILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITG
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GGG
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   10391040.........1050.........1060.........1070.........1080.........1090........
 
   120.........130.........140 .........150.........160.........170...
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Query Sequence  TSRGRIVVADVSPQTVEDSDG. . . . . . ELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLV
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Template Sequence  SDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH
Template Known Secondary structure  TTSTT


S
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   1100.........1110.........1120.........1130.........1140.........1150.........
 
   174.....180..... ....190.........200...
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Query Sequence  RCVRSNAAVCSS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SVVAVCDSRAMVWDVKGA
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Template Conservation                                                  
           
Template Sequence  YQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL
Template Known Secondary structure  TTGGGGSS



SS
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   1160.........1170.........1180.........1190.........1200.........1210.........
 
   204.....210.........220.........230.........240.........250.........260...
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Query Sequence  TQPVHTWVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIRTKEGSTSK
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Template Conservation    .........                       .       
                 
Template Sequence  ER. . . . . . . . . LQIIENSPRHGAVSSICIDEECC. VLILGTTRGIIDIWDIRFNVLIRSW
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GGG


TTS
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   1220. ........1230.........1240.... .....1250.........1260.........
 
   264.....270.........280.........290.........300.........310.........320...
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Query Sequence  LSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKY
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Template Sequence  SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFV. KGHCQYAFINSDEQPSMEHF
Template Known Secondary structure  B
TT

TTT
TTSTTTT.TTSSSS


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   1270.........1280.........1290.........1300........ .1310.........1320........
 
   324 .....330.........340.........350..
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Query Sequence  L. . . . . . . . . . . . . . . . . . . . . . . . . KLHSDIIATGGVDGSVVLWNLRSLPTYR. . . . . .
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Template Sequence  LPIEKGLEELNFCGIRSLNALSTISVS. NDKILLTDEATSSIVMFSLNELSSSKAVISPF
Template Known Secondary structure  S
B
SSGGG






SGGGG

.TTGGGTTT
GGG



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   13291330.........1340.........1350..... ....1360.........1370.........1380.......
 
   353......360.........370.........380.......
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Query Sequence  . . . . . . . . . . . . . . . VGRAQYKCPVFDLITTPWSVEQHVIGVTCGGELTL
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Template Sequence  SDVFIPTQVTANLTMLLRKMKHDIINSISTCEVDETPLLVACDNSGLIGI
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TT




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   1390.........1400.........1410.........1420.........1430.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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