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Job Descriptionexo99____
Confidence99.93%DateMon Feb 25 17:28:45 GMT 2019
Rank122Aligned Residues341
% Identity11%Templatec5f30B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:thiocyanate dehydrogenase; PDBTitle: thiocyanate dehydrogenase from thioalkalivibrio paradoxus
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20 .........30.........40.........50.........60...
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Query Sequence  IIQVPLYVSTSAWRKE. VQLRGLLRNHPSIIAHSDILPPATTAKVFSTAQLAAHHRENVL
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Template Sequence  VAPGKFSGTVAATDLSTGWTMAWLAAWNYGDTCPIMHHMAAFPSPDPYKEFEFVVNTQGG
Template Known Secondary structure 
BTT
TTT

GGGGT
SS



S
TTT

G
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   99100.........110.........120.........130.........140.........150........
 
   64.. ...70.........80... ......90.........100.........110.... .
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Query Sequence  AIG. . . . . LNPLSTSGACVGLLTME. SAEAKLSGMSKMQWLNLPSTEPLSSVEWCEG. . S
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Template Sequence  KNLFIYGVPVTVEDPGEGMKIYRIKYDGTRMNLQRDAAEVSGLGLGVH. . . VTITPEADG
Template Known Secondary structure  GGGGSSSS



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SS
SB


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   159160.........170.........180.........190.........200...... ...210.....
 
   116...120... ......130.........140.........150.........160.........170....
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Query Sequence  LLVGTSRG. RIVVADVSPQTVEDSDGELQRRTCLVCSEEQTPVGDIVVPPSKHAVSTLVR
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Template Sequence  YAVGDGQKDICAEFDRETDMVRYAWAFDWDPNVKDLKRAWL. . . DGGTMTIKRLKPTLPG
Template Known Secondary structure  TTTTTTT

SSSSTTTTTT...T




BGG
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   216...220.........230.........240.........250...... ...260.........270..
 
   175....180.........190.........200.........210.........220.........230....
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Query Sequence  CVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVHTWVPSVDSSKNSPNEQEPLLFAQWVP
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Template Sequence  GRYDLQG. SKGNKIDWELVPGGELAIEDG. . . . . . . . . . . KVSGDRPLHSVANDALVFDP
Template Known Secondary structure  GB
SB
T.TTT
SSSS


TTTT...........
S
SS
GGG



T
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   273...... 280.........290.........300 .........310.........320
 
   235....240.........250.........260......
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Query Sequence  NSDSVVLTGSYSGSLVFTDIRTKEGSTSKLSL. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  RGKWAVASMRLPGVCVVFDRENQVPVAVLAGPKGTPSQFQLVKVDDDTWTVDIPEVISAG
Template Known Secondary structure  TSSTTTTTTTT
STTS
S
TTS

S

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   321........330.........340.........350.........360.........370.........380
 
   267..270.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PARRGCMARCADF
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Template Sequence  HQAGFSPDGQSFLFMNSLRQNNIMVWDSSNHDDPTTWEKKAVVESPDWRGAYPNTFHMVF
Template Known Secondary structure 
TTSS
SSS



TT
GGG


TTS
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B


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   381........390.........400.........410.........420.........430.........440
 
   280.........290 .........300.........310.........320.........330...
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Query Sequence  NTLLPFALATA. . . . . SSDGIISVFDCRYPSTAVRTIPSLHGDIMSLKYLKLHSDIIAT.
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Template Sequence  TP. DAKKIYVTMWWPSPTPNGIAVIDAV. NWEVLKEVDLGPD. MHTLAITY. DGKFVVGT
Template Known Secondary structure 
T.TSSB
STTS
TT.TTS
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   441. .......450.........460....... ..470.........480 ........ .490......
 
   334.....340.........350.........360.........
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Query Sequence  . . . . GGVDGSVVLWNLRSLPTYRVGRAQYKCPVFDLITTP
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Template Sequence  LSGYQNTASAIVVMETETDEV. . LGFLPSPMGHHDNVIVP
Template Known Secondary structure  GGGTS
TTT

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   497..500.........510....... ..520.........530....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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