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Job Descriptionexo99____
Confidence99.97%DateMon Feb 25 17:28:45 GMT 2019
Rank44Aligned Residues224
% Identity17%Templatec5o9zF_
PDB info PDB header:splicingChain: F: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp4; PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
Resolution4.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   92.......100.........110.... .....120.........130...... ...140........
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Query Sequence  MSKMQWLNLPSTEPLSSVEWCEG. . SLLVGTSRGRIVVADVSPQTVE. DSDGELQRRTCL
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Template Sequence  SLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAI
Template Known Secondary structure  S
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   219220.........230.........240.........250.........260.........270........
 
   149150.........160.........170.........180.........190.........200........
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Query Sequence  VCSEEQTPVGDIVVPPSKHAVSTLVRCVRSNAAVCSSSVVAVCDSRAMVWDVKGATQPVH
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Template Sequence  VFHPKSTVSLDPK. . . . . . . . . . . . . . . . . . . . . DVNLASCAADGSVKLWSLDSDEPVAD
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TTT.....................T
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   279280.........290. ........300.........310.......
 
   209
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Query Sequence  T. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGS
Template Known Secondary structure  S
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   318.320.........330.........340.........350.........360.........370.......
 
   210.........220.........230.........240.........250.....
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Query Sequence  . . . . . . . . . . . . . . WVPSVDSSKNSPNEQEPLLFAQWVPNSDSVVLTGSYSGSLVFTDIR
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Template Conservation                                            .                 
Template Sequence  LAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGY. HIATGSGDNTCKVWDLR
Template Known Secondary structure  TTS
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   378.380.........390.........400.........410......... 420.........430......
 
   256...260.........270.........280.........290.........300.........310.....
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Query Sequence  TKEGSTSKLSLPARRGCMARCADFNTLLPFALATASSDGIISVFDCRYPSTAVRTIPSLH
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Template Sequence  QRRC. . . . VYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHP. GWSPLKTLAGHE
Template Known Secondary structure  S


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   437..440 .........450.........460.........470......... 480.........490.
 
   316...320.........330.........340...
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Query Sequence  GDIMSLKYLKLHSDIIATGGVDGSVVLW
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Template Sequence  GKVMGLDISS. DGQLIATCSYDRTFKLW
Template Known Secondary structure  S



S.SS


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   492.......500. ........510........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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