Carbon and nitrogen cycling in Yedoma permafrost controlled by microbial functional limitations

Sylvain Monteux, Frida Keuper, Sébastien Fontaine, Konstantin Gavazov, Sara Hallin, Jaanis Juhanson, Eveline J. Krab, Sandrine Revaillot, Erik Verbruggen, Josefine Walz, James T. Weedon, Ellen Dorrepaal

Nature Geoscience (2020), https://dx.doi.org/10.1038/s41561-020-00662-4

Bacterial DNA data processing

Sotfware and directories

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Sequence handling

Control OTUs removal

OTU table processing

Multiple rarefactions and downstream dataset processing

Differential abundance (DESeq) for soil transfer effect

R folder preparation