Carbon and nitrogen cycling in Yedoma permafrost controlled by microbial functional limitations

Sylvain Monteux, Frida Keuper, Sébastien Fontaine, Konstantin Gavazov, Sara Hallin, Jaanis Juhanson, Eveline J. Krab, Sandrine Revaillot, Erik Verbruggen, Josefine Walz, James T. Weedon, Ellen Dorrepaal

Nature Geoscience (2020), https://dx.doi.org/10.1038/s41561-020-00662-4

Fungal DNA data processing

Sotfware and directories

This Jupyter notebook was ran with the following software:

In this notebook, qiime is installed on a conda env called "qiime", and is called by "conda activate qiime", feel free to replace that with whatever you call it, or to remove that line if qiime is installed without conda. Please refer to the first section of the 16S/MonteuxKeuper_16S.ipynb file to create the conda environment.

Export files used in downstream R analysis