Basic Statistics
Measure | Value |
---|---|
Filename | Human_alphaherpesvirus_3_NC_001348_GMAP_CAP_failed.sam.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8602 |
Sequences flagged as poor quality | 0 |
Sequence length | 51-4953 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTGACG | 10 | 0.005029175 | 1249.1041 | 480-489 |
CCGAAAG | 10 | 0.005921772 | 1153.0193 | 470-479 |
GTACTGA | 10 | 0.00903633 | 936.8281 | 450-459 |
ACTGCCA | 10 | 0.009619105 | 908.43945 | 440-449 |
TCCGCAC | 10 | 0.009619105 | 908.43945 | 440-449 |
TATGGGT | 15 | 0.009469017 | 908.43945 | 490-494 |
TAGAAAT | 10 | 0.009619105 | 908.43945 | 440-449 |
AAACAGT | 20 | 3.6872135E-4 | 384.33972 | 470-479 |
TGCGGGG | 10 | 5.0463394E-4 | 348.5872 | 1 |
CCCGTGC | 10 | 5.0463394E-4 | 348.5872 | 1 |
TGCGTGT | 10 | 5.0463394E-4 | 348.5872 | 1 |
TGCCGCT | 10 | 5.0463394E-4 | 348.5872 | 1 |
TCTTTTT | 85 | 0.0 | 328.0821 | 1 |
AACGTAG | 30 | 8.942834E-4 | 285.50952 | 430-439 |
CTTTTTA | 40 | 9.094947E-12 | 261.4404 | 2 |
TTGGTAG | 20 | 1.1325459E-5 | 261.4404 | 1 |
TCACGCA | 15 | 0.0016995441 | 232.39148 | 7 |
TTGATCA | 15 | 0.0016995441 | 232.39148 | 4 |
CTTTTTG | 15 | 0.0016995441 | 232.39148 | 2 |
TTGTACT | 15 | 0.0016995441 | 232.39148 | 4 |