Basic Statistics
Measure | Value |
---|---|
Filename | Human_alphaherpesvirus_3_NC_001348_PolyA.sam.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 57888 |
Sequences flagged as poor quality | 0 |
Sequence length | 56-10496 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCCATTACGGCCGGGGCTGTTTAATACGCGGTCTGCCGTGTTTGGATATT | 76 | 0.1312880044223328 | No Hit |
ATACGCATTCCGGCCTCATTATACCCAGCCACTGTTGTTACGTCGTTGTT | 59 | 0.10192095080154781 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCCATT | 1345 | 0.0 | 274.53528 | 1 |
CCATTAC | 1915 | 0.0 | 214.1051 | 3 |
GCCATTA | 1955 | 0.0 | 212.17738 | 2 |
ATTACGG | 1995 | 0.0 | 192.2989 | 5 |
CATTACG | 2100 | 0.0 | 186.10928 | 4 |
ACGGCTG | 250 | 0.0 | 182.22723 | 8 |
CGCCATT | 370 | 0.0 | 181.4496 | 1 |
TTACGGC | 2205 | 0.0 | 170.7225 | 6 |
ACGGCCG | 1855 | 0.0 | 165.44962 | 8 |
TACGGCT | 335 | 0.0 | 164.62004 | 7 |
CGGCCGG | 1785 | 0.0 | 163.87825 | 9 |
TACGGCC | 2060 | 0.0 | 158.29652 | 7 |
TTAACCT | 185 | 0.0 | 155.52823 | 1 |
GGCCGAA | 85 | 4.3255568E-8 | 141.04276 | 9 |
TACGTGG | 35 | 0.00837927 | 137.01297 | 6 |
TACGGCG | 195 | 0.0 | 135.2564 | 6 |
GGCCGGG | 1830 | 0.0 | 134.95403 | 9 |
TAACCTT | 145 | 0.0 | 132.28838 | 2 |
CGGCCGA | 210 | 0.0 | 125.59523 | 8 |
CCTTCTG | 80 | 5.443939E-6 | 119.88635 | 5 |