Basic Statistics
Measure | Value |
---|---|
Filename | Human_alphaherpesvirus_3_NC_001348_CAP.sam.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 509531 |
Sequences flagged as poor quality | 0 |
Sequence length | 56-5793 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTGTTGTACTTCGTTCAGTTACGTATTGCTTCTCAGGCGTTTTTTTTTTT | 1730 | 0.33952791881161304 | No Hit |
TTGTTGTACTTCGTTCAGTTACGTATTGCTTGGATTGATATGTAATACGA | 1512 | 0.2967434758630976 | No Hit |
TTGTTATTACTTCGTTCAGTTACGTATTGCTTCTCAGGCGTTTTTTTTTT | 923 | 0.18114697633706292 | No Hit |
TTGGTATTACTTCGTTCAGTTACGTATTGCTTCTCAGGCGTTTTTTTTTT | 787 | 0.15445576422239274 | No Hit |
TTGGTATGCTTCGTTCAGTTACGTATTGCTTCTCAGGCGTTTTTTTTTTT | 759 | 0.1489605146693724 | No Hit |
TTGGTATTACTTCGTTCAGTTACGTATTGCTTGGATTGATATGTAATACG | 749 | 0.14699792554329374 | No Hit |
TTGGTAATACTTCGTTCAGTTACGTATTGCTTCTCAGGCGTTTTTTTTTT | 741 | 0.14542785424243077 | No Hit |
TTGGTATGCTTCGTTCAGTTACGTATTGCTTGGATTGATATGTAATACGA | 643 | 0.12619448080685966 | No Hit |
TTGTTATTACTTCGTTCAGTTACGTATTGCTTGGATTGATATGTAATACG | 620 | 0.12168052581687866 | No Hit |
TTGGTACTTCGTTCAGTTACGTATTGCTTGGATTGATATGTAATACGACT | 602 | 0.11814786538993702 | No Hit |
TTATTGTACTTCGTTCAGTTACGTATTGCTTCTCAGGCGTTTTTTTTTTT | 566 | 0.11108254453605375 | No Hit |
TTGGTAATACTTCGTTCAGTTACGTATTGCTTGGATTGATATGTAATACG | 548 | 0.1075498841091121 | No Hit |
TTGGTACTTCGTTCAGTTACGTATTGCTTCTCAGGCGTTTTTTTTTTTTT | 540 | 0.10597981280824914 | No Hit |
TTATTGTACTTCGTTCAGTTACGTATTGCTTGGATTGATATGTAATACGA | 520 | 0.10205463455609178 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTTTTT | 4950 | 0.0 | 326.7641 | 1 |
GTTGTAC | 2180 | 0.0 | 304.5505 | 3 |
TGGTACT | 1050 | 0.0 | 286.5971 | 2 |
TTGGTAT | 3225 | 0.0 | 278.7657 | 1 |
TGCGGGG | 1330 | 0.0 | 264.44238 | 1 |
TTGTACT | 3560 | 0.0 | 264.15637 | 4 |
TTGGTAC | 1230 | 0.0 | 259.94705 | 1 |
TTGGTAG | 725 | 0.0 | 256.8256 | 1 |
TGGTATG | 1515 | 0.0 | 245.80666 | 2 |
TGCAAGT | 390 | 0.0 | 241.12737 | 1 |
GCGGTTA | 1120 | 0.0 | 235.09917 | 2 |
TGTTATT | 1750 | 0.0 | 234.2931 | 2 |
CGGGGTT | 1370 | 0.0 | 229.26459 | 3 |
TGTACTT | 5080 | 0.0 | 228.80518 | 5 |
CCCGCTA | 810 | 0.0 | 222.90884 | 1 |
CCCGTTA | 215 | 0.0 | 218.69691 | 1 |
CTTTTTA | 750 | 0.0 | 208.14114 | 2 |
TGCGTGT | 570 | 0.0 | 204.57751 | 1 |
TGTTGTA | 3330 | 0.0 | 202.76422 | 2 |
GGTATGC | 2205 | 0.0 | 202.1533 | 3 |