FastQCFastQC Report
H 27 aug. 2018
Human_alphaherpesvirus_3_NC_001348_GMAP_CAP_failed.sam.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameHuman_alphaherpesvirus_3_NC_001348_GMAP_CAP_failed.sam.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8602
Sequences flagged as poor quality0
Sequence length51-4953
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTGACG100.0050291751249.1041480-489
CCGAAAG100.0059217721153.0193470-479
GTACTGA100.00903633936.8281450-459
ACTGCCA100.009619105908.43945440-449
TCCGCAC100.009619105908.43945440-449
TATGGGT150.009469017908.43945490-494
TAGAAAT100.009619105908.43945440-449
AAACAGT203.6872135E-4384.33972470-479
TGCGGGG105.0463394E-4348.58721
CCCGTGC105.0463394E-4348.58721
TGCGTGT105.0463394E-4348.58721
TGCCGCT105.0463394E-4348.58721
TCTTTTT850.0328.08211
AACGTAG308.942834E-4285.50952430-439
CTTTTTA409.094947E-12261.44042
TTGGTAG201.1325459E-5261.44041
TCACGCA150.0016995441232.391487
TTGATCA150.0016995441232.391484
CTTTTTG150.0016995441232.391482
TTGTACT150.0016995441232.391484