FastQCFastQC Report
H 27 aug. 2018
Human_alphaherpesvirus_3_NC_001348_PolyA.sam.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameHuman_alphaherpesvirus_3_NC_001348_PolyA.sam.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57888
Sequences flagged as poor quality0
Sequence length56-10496
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATTACGGCCGGGGCTGTTTAATACGCGGTCTGCCGTGTTTGGATATT760.1312880044223328No Hit
ATACGCATTCCGGCCTCATTATACCCAGCCACTGTTGTTACGTCGTTGTT590.10192095080154781No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCATT13450.0274.535281
CCATTAC19150.0214.10513
GCCATTA19550.0212.177382
ATTACGG19950.0192.29895
CATTACG21000.0186.109284
ACGGCTG2500.0182.227238
CGCCATT3700.0181.44961
TTACGGC22050.0170.72256
ACGGCCG18550.0165.449628
TACGGCT3350.0164.620047
CGGCCGG17850.0163.878259
TACGGCC20600.0158.296527
TTAACCT1850.0155.528231
GGCCGAA854.3255568E-8141.042769
TACGTGG350.00837927137.012976
TACGGCG1950.0135.25646
GGCCGGG18300.0134.954039
TAACCTT1450.0132.288382
CGGCCGA2100.0125.595238
CCTTCTG805.443939E-6119.886355