The *Crowding.csv
files contain information on the crowding experienced by a focal genet at a specific time.
R
files:
recruitmentAllSpp_STAN.R
: script to read-in and format data, and then fit genet recruitment regression using Stan (see recruitment.stan
file for model code).import2ipm_means.R
: collates MCMC results and defines function for importing posterior mean model coefficients for IPM simulations.import2ipm.R
: collates MCMC results and defines function for importing ranomly selected model coefficients from the full MCMC for IPM simulations with variable parameters.The recruitment.stan
file contains a Stan model for fitting the genet recruitment regression via ‘No-U-Turn’ Hamiltonian Monte Carlo.
The *.RDS
files contain the MCMC samples from model fitting for each species.