This directory contains sub-directories for fitting vital rate regression models for each vital rate (growth/
, survival/
, and recruitment/
), a subdirectory containing scripts for running cross-validation and ridge regression for each vital rate (regularization/
), and a subdirectory containing scripts for leave-one-year-out cross-validation for each vital rate regression (validation/
). There is also a cache/
directory containing old versions of scripts.
There are two R scripts:
checkParmCorrs.R
– calculates correlations between fitted climate covariates and random year effects
climate_effects_plot.R
– plots posterior means and 95% credible intervals for each climate effect from the MCMC