D. D. Ackerly, D. S. Schwilk, and C. O. Webb. 2006. Niche evolution and adaptive radiation: testing the order of trait divergence. Ecology 87:S50–S61.

Supplement

Source code for DOT test.
Ecological Archives E087-110-S1.

Copyright

Authors
File list (downloads)
Description

Author(s)

David D. Ackerly
Dept. of Integrative Biology
3060 Valley Life Sciences Building
University of California
Berkeley, CA 94720-3140
E-mail: dackerly@berkeley.edu

Campbell O. Webb
Arnold Arboretum of Harvard University
Harvard University Herbaria
Cambridge, MA 02138
E-mail: cwebb@oeb.harvard.edu

File list

readme.txt  - Instructions to install and run scripts
dot.R  - main R script for DOT test
picfixed.R  - R function required by DOT
trancml  - awk script that runs ancml and formats output for dot.R
phylo  - sample phylogeny file
traits  - sample traits file
dot.zip  - all files at once

Description

This set of scripts, written in R and awk, together with Schluter et al.'s ancml program, will run the DOT test presented in this publication. Sample files (phylo and traits) are also provided. See readme.txt for a full description and instructions for use.