Predicted piRNA cluster no. 126     previous   next

Show proTRAC run info

Show proTRAC cluster info

Hide read coverage
1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
5001
23007
Gene Set
RepeatMasker
Mapped
Reads
361.23
plus strand
minus strand
361.23
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00003175) Tr:4: 19827-20045 (-)
2. unknown (unknowndsub_v4_00003176) Tr:4: 20632-20734 (-)
3. unknown (unknowndsub_v4_00003176) Tr:4: 20313-20623 (-)
4. unknown (unknowndsub_v4_00003177) Tr:4: 20752-21060 (-)

RepeatMasker Annotation
1. TE-564_Dsub: 9362-11079 (-), Divergence to consensus: 3.5%
2. TE-564_Dsub: 11079-12533 (-), Divergence to consensus: 5.7%
3. TE-564_Dsub: 12532-13142 (-), Divergence to consensus: 5.3%
4. TE-460_Dsub: 13145-13573 (-), Divergence to consensus: 10.8%
5. TE-599_Dsub: 14578-14867 (+), Divergence to consensus: 9.7%
6. GYPSY-6_Dsub: 14856-15378 (+), Divergence to consensus: 3.1%
7. GYPSY-6_Dsub: 15492-16275 (+), Divergence to consensus: 1.8%
8. TE-622_Dsub: 16247-17114 (+), Divergence to consensus: 9.6%
9. GYPSY-6_Dsub: 17051-17843 (+), Divergence to consensus: 3.6%
10. GYPSY-6_Dsub: 18321-18740 (+), Divergence to consensus: 3.3%
11. TE-599_Dsub: 18741-19042 (+), Divergence to consensus: 5.5%
12. TE-342_Dsub: 19040-19154 (+), Divergence to consensus: 24%
13. TE-601_Dsub: 19055-19241 (-), Divergence to consensus: 7.6%
14. TE-563_Dsub: 21043-21187 (-), Divergence to consensus: 15.6%
15. TE-560_Dsub: 21060-21408 (+), Divergence to consensus: 8%
16. TE-586_Dsub: 21411-21784 (+), Divergence to consensus: 20.3%
17. TE-633_Dsub: 21785-22210 (-), Divergence to consensus: 12%
18. TE-83_Dsub: 22144-22296 (-), Divergence to consensus: 39.6%
19. TE-586_Dsub: 22297-22646 (+), Divergence to consensus: 20.3%
20. TE-454_Dsub: 22378-22949 (-), Divergence to consensus: 15.7%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAA (-): 14844)
SOX9 (Sequence: AACAATAA (-): 19018)
FOXP1 (Sequence: TGTTTAC (-): 12378)
FOXP1 (Sequence: TGTTTAC (-): 12501)
Lhx8 (Sequence: TTAATTAA (-): 10651)
Rhox11 (Sequence: CGCTGTTTA (+): 12498)
Rhox11 (Sequence: TGGTGTAAT (+): 19248)
FOXO1 (Sequence: CTTGTTTTT (+): 10147)
FOXO1 (Sequence: CTTGTTTAC (+): 12376)
FOXO1 (Sequence: GCTGTTTAC (+): 12499)
POU5F1 (Sequence: ATGCAAA (+): 17834)
POU5F1 (Sequence: ATGCAAA (+): 20835)
FOXO3_mmu (Sequence: TGTTTTGA (-): 11283)
FOXO3_mmu (Sequence: TGTTTTGA (-): 17377)
POU2F1 (Sequence: TATTTTAAT (+): 20553)
Nobox (Sequence: TAATTGGC (+): 10330)
Nobox (Sequence: TAATTGCT (+): 10430)
Nobox (Sequence: TAATTGGC (+): 17694)
RHOXF1 (Sequence: AGATCA (-): 9634)
RHOXF1 (Sequence: GGATTA (-): 10218)
RHOXF1 (Sequence: GGCTCA (-): 11258)
RHOXF1 (Sequence: AGATTA (-): 11324)
RHOXF1 (Sequence: AGCTTA (-): 12440)
RHOXF1 (Sequence: AGCTCA (-): 13461)
RHOXF1 (Sequence: AGATCA (-): 15488)
RHOXF1 (Sequence: AGATTA (-): 16105)
RHOXF1 (Sequence: GGCTCA (-): 16756)
RHOXF1 (Sequence: GGCTCA (-): 16911)
RHOXF1 (Sequence: AGATTA (-): 17598)
RHOXF1 (Sequence: GGCTCA (-): 18162)
RHOXF1 (Sequence: AGCTCA (-): 18195)
RHOXF1 (Sequence: AGATCA (-): 18570)
RHOXF1 (Sequence: GGATTA (-): 19654)
RHOXF1 (Sequence: AGATCA (-): 20990)
RHOXF1 (Sequence: GGCTCA (-): 22066)
RHOXF1 (Sequence: AGATCA (-): 22242)
RHOXF1 (Sequence: GGATCA (-): 22266)
RHOXF1 (Sequence: AGCTTA (-): 22329)
RHOXF1 (Sequence: AGCTCA (-): 22626)
FOXO3_mmu (Sequence: TCTAAACA (+): 9840)
Sox5 (Sequence: ATTGTT (+): 10344)
Sox5 (Sequence: ATTGTT (+): 11281)
Sox5 (Sequence: ATTGTT (+): 13405)
Sox5 (Sequence: ATTGTT (+): 20439)
FOXO1 (Sequence: ATAAACAGC (-): 16533)
Nobox (Sequence: AGTAATTA (-): 20669)
Mybl1_1 (Sequence: AACCGTTA (+): 16996)
SOX9 (Sequence: CTATTGTT (+): 10342)
SOX9 (Sequence: TTATTGTT (+): 11279)
POU5F1 (Sequence: TTTGCAT (-): 13430)
POU5F1 (Sequence: TTTGCAT (-): 19187)
Mybl1_1 (Sequence: TAACGGTT (-): 11115)
RHOXF1 (Sequence: TAATCC (+): 9665)
RHOXF1 (Sequence: TGATCT (+): 9801)
RHOXF1 (Sequence: TAATCT (+): 10250)
RHOXF1 (Sequence: TAAGCC (+): 10553)
RHOXF1 (Sequence: TAATCC (+): 10710)
RHOXF1 (Sequence: TAATCT (+): 10931)
RHOXF1 (Sequence: TGATCT (+): 11243)
RHOXF1 (Sequence: TGATCC (+): 11840)
RHOXF1 (Sequence: TGAGCT (+): 12438)
RHOXF1 (Sequence: TAATCT (+): 12528)
RHOXF1 (Sequence: TGATCT (+): 15302)
RHOXF1 (Sequence: TGATCC (+): 16620)
RHOXF1 (Sequence: TGATCT (+): 16644)
RHOXF1 (Sequence: TGATCC (+): 18351)
RHOXF1 (Sequence: TGAGCT (+): 18394)
RHOXF1 (Sequence: TAAGCC (+): 18544)
RHOXF1 (Sequence: TGAGCC (+): 19111)
RHOXF1 (Sequence: TAAGCC (+): 19386)
RHOXF1 (Sequence: TAATCC (+): 19745)
RHOXF1 (Sequence: TGATCT (+): 19884)
RHOXF1 (Sequence: TGAGCC (+): 21198)
RHOXF1 (Sequence: TGATCC (+): 21414)
RHOXF1 (Sequence: TAAGCT (+): 21650)
RHOXF1 (Sequence: TAAGCT (+): 21782)
RHOXF1 (Sequence: TGATCT (+): 21871)
RHOXF1 (Sequence: TGAGCT (+): 22624)
Rhox11 (Sequence: TAAACAGCG (-): 16534)
Rhox11 (Sequence: AAAACACCA (-): 18774)
Gata4 (Sequence: AGATAAG (-): 16156)
FOXO3_hsa (Sequence: TTGTTTAC (-): 12377)
Gata4 (Sequence: GTTATCT (+): 9750)
Gata4 (Sequence: GTTATCT (+): 11524)
Gata4 (Sequence: CTTATCT (+): 12572)
Gata4 (Sequence: GTTATCT (+): 16694)
Sox5 (Sequence: AACAAT (-): 9893)
Sox5 (Sequence: AACAAT (-): 10898)
Sox5 (Sequence: AACAAT (-): 11016)
Sox5 (Sequence: AACAAT (-): 11985)
Sox5 (Sequence: AACAAT (-): 12392)
Sox5 (Sequence: AACAAT (-): 14844)
Sox5 (Sequence: AACAAT (-): 17678)
Sox5 (Sequence: AACAAT (-): 18590)
Sox5 (Sequence: AACAAT (-): 19018)
Sox5 (Sequence: AACAAT (-): 19612)