Predicted piRNA cluster no. 138     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
1594897
1604591
Gene Set
RepeatMasker
Mapped
Reads
32.15
plus strand
minus strand
32.15
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-622_Dsub: 1594793-1595005 (+), Divergence to consensus: 20.3%
2. TE-330_Dsub: 1594902-1595021 (-), Divergence to consensus: 19.5%
3. TE-640_Dsub: 1594999-1595149 (+), Divergence to consensus: 17.8%
4. TE-588_Dsub: 1595563-1595644 (+), Divergence to consensus: 13.4%
5. CR1-1_Dsub: 1595780-1596002 (+), Divergence to consensus: 20.9%
6. TE-560_Dsub: 1595986-1596797 (+), Divergence to consensus: 11.3%
7. CR1-1_Dsub: 1596786-1597516 (+), Divergence to consensus: 26.2%
8. CR1-4_Dsub: 1597528-1597724 (+), Divergence to consensus: 7.3%
9. TE-622_Dsub: 1597724-1597837 (+), Divergence to consensus: 7.9%
10. TE-622_Dsub: 1598167-1598406 (-), Divergence to consensus: 28.2%
11. TE-259_Dsub: 1598424-1598522 (+), Divergence to consensus: 15.4%
12. TE-610_Dsub: 1598452-1598597 (-), Divergence to consensus: 23%
13. TE-452_Dsub: 1598567-1598844 (-), Divergence to consensus: 20.5%
14. TE-468_Dsub: 1598816-1599087 (-), Divergence to consensus: 17.5%
15. TE-236_Dsub: 1599079-1599289 (-), Divergence to consensus: 20.8%
16. TE-622_Dsub: 1599202-1599503 (+), Divergence to consensus: 19%
17. TE-603_Dsub: 1599430-1599520 (-), Divergence to consensus: 22%
18. P-1_Dsub: 1600130-1600445 (-), Divergence to consensus: 21.1%
19. P-3_Dsub: 1600413-1600449 (-), Divergence to consensus: 8.1%
20. TE-231_Dsub: 1600641-1600674 (-), Divergence to consensus: 23.4%
21. TE-562_Dsub: 1600666-1600737 (+), Divergence to consensus: 21.1%
22. HELITRON-3_Dsub: 1600675-1600748 (+), Divergence to consensus: 18.9%
23. TE-516_Dsub: 1600684-1600802 (-), Divergence to consensus: 27.4%
24. TE-640_Dsub: 1601002-1602100 (+), Divergence to consensus: 5.1%
25. TE-640_Dsub: 1602104-1602658 (-), Divergence to consensus: 1.5%
26. TE-588_Dsub: 1602494-1602885 (+), Divergence to consensus: 7.9%
27. TE-395_Dsub: 1602834-1602894 (-), Divergence to consensus: 25.3%
28. TE-621_Dsub: 1602926-1604592 (+), Divergence to consensus: 4.9%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 1595114)
SOX9 (Sequence: AACAATAA (-): 1600649)
SOX9 (Sequence: AACAATGA (-): 1601114)
FOXP1 (Sequence: TGTTTAC (-): 1596485)
Lhx8 (Sequence: TTAATTAA (-): 1597870)
Lhx8 (Sequence: TTAATTAA (-): 1599236)
Lhx8 (Sequence: CTAATTAA (-): 1603180)
Lhx8 (Sequence: TTAATTAG (-): 1604333)
Rhox11 (Sequence: TGCTGTTTT (+): 1598323)
FOXO1 (Sequence: GTTGTTTAC (+): 1596483)
FOXO1 (Sequence: GCTGTTTTC (+): 1598324)
FOXO1 (Sequence: GTTGTTTTT (+): 1602759)
FOXO1 (Sequence: GTTGTTTTC (+): 1603147)
POU5F1 (Sequence: ATGCAAA (+): 1602259)
POU5F1 (Sequence: ATGCAAA (+): 1603001)
FOXO3_mmu (Sequence: TGTTTTGC (-): 1595807)
FOXO3_mmu (Sequence: TGTTTTGC (-): 1595809)
FOXO3_mmu (Sequence: TGTTTACA (-): 1596485)
FOXO3_mmu (Sequence: TGTTTTGC (-): 1598048)
FOXO3_mmu (Sequence: TGTTTTCA (-): 1598326)
FOXO3_mmu (Sequence: TGTTTTCA (-): 1603149)
POU2F1 (Sequence: TATGTAAAT (+): 1599084)
POU2F1 (Sequence: TATGCTAAT (+): 1603798)
Nobox (Sequence: TAATTAGT (+): 1601986)
RHOXF1 (Sequence: AGCTTA (-): 1595292)
RHOXF1 (Sequence: GGCTTA (-): 1595614)
RHOXF1 (Sequence: GGATCA (-): 1596409)
RHOXF1 (Sequence: AGCTTA (-): 1596472)
RHOXF1 (Sequence: AGATCA (-): 1597081)
RHOXF1 (Sequence: GGCTTA (-): 1597617)
RHOXF1 (Sequence: AGATTA (-): 1597676)
RHOXF1 (Sequence: AGCTTA (-): 1598400)
RHOXF1 (Sequence: AGCTCA (-): 1599890)
RHOXF1 (Sequence: AGATTA (-): 1601143)
RHOXF1 (Sequence: GGATCA (-): 1601759)
RHOXF1 (Sequence: AGATTA (-): 1602358)
RHOXF1 (Sequence: AGATTA (-): 1602553)
RHOXF1 (Sequence: AGCTCA (-): 1603365)
FOXO3_mmu (Sequence: TGAAAACA (+): 1595171)
FOXO3_mmu (Sequence: TCAAAACA (+): 1600251)
FOXO3_mmu (Sequence: TGAAAACA (+): 1604364)
Sox5 (Sequence: ATTGTT (+): 1595661)
Sox5 (Sequence: ATTGTT (+): 1599501)
Sox5 (Sequence: ATTGTT (+): 1600308)
Sox5 (Sequence: ATTGTT (+): 1602577)
Sox5 (Sequence: ATTGTT (+): 1603793)
Sox5 (Sequence: ATTGTT (+): 1604183)
Sox5 (Sequence: ATTGTT (+): 1604329)
FOXO1 (Sequence: AAAAACAAC (-): 1599596)
FOXO1 (Sequence: GAAAACAAC (-): 1604365)
Nobox (Sequence: GGCAATTA (-): 1598137)
POU2F1 (Sequence: ATTTGCATA (-): 1595875)
POU2F1 (Sequence: ATTTACATA (-): 1600667)
SOX9 (Sequence: TTATTGTT (+): 1600306)
POU5F1 (Sequence: TTTGCAT (-): 1595876)
POU5F1 (Sequence: TTTGCAT (-): 1596225)
POU5F1 (Sequence: TTTGCAT (-): 1597791)
POU5F1 (Sequence: TTTGCAT (-): 1599268)
POU5F1 (Sequence: TTTGCAT (-): 1604513)
Mybl1_1 (Sequence: TAACGGTT (-): 1594950)
Mybl1_1 (Sequence: TAACGGTT (-): 1596050)
RHOXF1 (Sequence: TAATCT (+): 1595366)
RHOXF1 (Sequence: TAATCT (+): 1595956)
RHOXF1 (Sequence: TGAGCC (+): 1596137)
RHOXF1 (Sequence: TGAGCC (+): 1596276)
RHOXF1 (Sequence: TAAGCC (+): 1596809)
RHOXF1 (Sequence: TGATCT (+): 1597336)
RHOXF1 (Sequence: TGATCT (+): 1598617)
RHOXF1 (Sequence: TGATCT (+): 1598909)
RHOXF1 (Sequence: TGAGCT (+): 1599217)
RHOXF1 (Sequence: TAAGCT (+): 1599301)
RHOXF1 (Sequence: TAAGCC (+): 1599435)
RHOXF1 (Sequence: TAATCT (+): 1599810)
RHOXF1 (Sequence: TAAGCT (+): 1599888)
RHOXF1 (Sequence: TGATCT (+): 1600975)
RHOXF1 (Sequence: TGATCC (+): 1601388)
RHOXF1 (Sequence: TGATCC (+): 1601479)
RHOXF1 (Sequence: TAAGCT (+): 1602385)
RHOXF1 (Sequence: TGAGCT (+): 1604150)
Gata4 (Sequence: AGATAAC (-): 1595312)
Gata4 (Sequence: AGATAAC (-): 1596337)
Gata4 (Sequence: AGATAAG (-): 1597657)
FOXO3_hsa (Sequence: TTGTTTAC (-): 1596484)
Gata4 (Sequence: CTTATCT (+): 1599862)
Sox5 (Sequence: AACAAT (-): 1595114)
Sox5 (Sequence: AACAAT (-): 1600301)
Sox5 (Sequence: AACAAT (-): 1600649)
Sox5 (Sequence: AACAAT (-): 1601114)
Sox5 (Sequence: AACAAT (-): 1603186)
Sox5 (Sequence: AACAAT (-): 1603332)
Sox5 (Sequence: AACAAT (-): 1603720)