Predicted piRNA cluster no. 8     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
cDot_v4 
1250302
1269758
Gene Set
RepeatMasker
Mapped
Reads
45.97
plus strand
minus strand
45.97
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00013123) Tr:4: 1251292-1251732 (+)
2. unknown (unknowndsub_v4_00013123) Tr:4: 1251820-1252003 (+)
3. unknown (unknowndsub_v4_00013123) Tr:4: 1252053-1252598 (+)
4. unknown (unknowndsub_v4_00013123) Tr:4: 1252675-1253185 (+)
5. unknown (unknowndsub_v4_00013123) Tr:4 UTR: 1251292-1251331 (+)
6. unknown (unknowndsub_v4_00013123) Tr:4 UTR: 1252987-1253185 (+)
7. unknown (unknowndsub_v4_00013123) Tr:4: 1251820-1252003 (+)
8. unknown (unknowndsub_v4_00013123) Tr:4: 1252053-1252598 (+)
9. unknown (unknowndsub_v4_00013123) Tr:4: 1252675-1253185 (+)
10. unknown (unknowndsub_v4_00013123) Tr:4: 1251196-1251732 (+)
11. unknown (unknowndsub_v4_00013123) Tr:4 UTR: 1251196-1251331 (+)
12. unknown (unknowndsub_v4_00013123) Tr:4 UTR: 1252987-1253185 (+)

RepeatMasker Annotation
1. TE-342_Dsub: 1247883-1251333 (+), Divergence to consensus: 0.9%
2. TE-342_Dsub: 1251730-1252052 (+), Divergence to consensus: 0.3%
3. TE-342_Dsub: 1252598-1252630 (+), Divergence to consensus: 0%
4. TE-446_Dsub: 1253203-1253522 (+), Divergence to consensus: 2.9%
5. TE-446_Dsub: 1254240-1255865 (+), Divergence to consensus: 1.6%
6. TE-446_Dsub: 1257198-1258837 (+), Divergence to consensus: 0.7%
7. TE-446_Dsub: 1259555-1261193 (+), Divergence to consensus: 0.7%
8. TE-446_Dsub: 1262515-1264154 (+), Divergence to consensus: 0.6%
9. TE-446_Dsub: 1265476-1267139 (+), Divergence to consensus: 1.9%
10. HELITRON-4_Dsub: 1267140-1267269 (-), Divergence to consensus: 29.9%
11. TE-330_Dsub: 1267209-1267292 (+), Divergence to consensus: 30.3%
12. TE-100_Dsub: 1267239-1267299 (-), Divergence to consensus: 29.5%
13. TE-96_Dsub: 1267811-1267930 (+), Divergence to consensus: 35%
14. TE-330_Dsub: 1267818-1267933 (+), Divergence to consensus: 37.4%
15. TE-607_Dsub: 1267934-1268067 (-), Divergence to consensus: 32.6%
16. TE-492_Dsub: 1268069-1268132 (+), Divergence to consensus: 11.1%
17. TE-492_Dsub: 1268128-1268204 (+), Divergence to consensus: 9.1%
18. TE-223_Dsub: 1268171-1268303 (+), Divergence to consensus: 13.2%
19. TE-560_Dsub: 1268203-1268840 (-), Divergence to consensus: 17.5%
20. TE-167_Dsub: 1268667-1268876 (+), Divergence to consensus: 32.2%
21. TE-492_Dsub: 1268863-1269115 (+), Divergence to consensus: 18.1%
22. TRANSIB-1_Dsub: 1269114-1269647 (-), Divergence to consensus: 10.1%
23. TE-607_Dsub: 1269655-1269761 (+), Divergence to consensus: 29.1%
24. TE-416_Dsub: 1269725-1269775 (-), Divergence to consensus: 14.6%
25. TE-477_Dsub: 1269756-1270043 (+), Divergence to consensus: 31.1%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAA (-): 1251383)
SOX9 (Sequence: AACAATGG (-): 1252466)
FOXP1 (Sequence: TGTTTAC (-): 1254590)
FOXP1 (Sequence: TGTTTAC (-): 1257548)
FOXP1 (Sequence: TGTTTAC (-): 1259905)
FOXP1 (Sequence: TGTTTAC (-): 1262865)
FOXP1 (Sequence: TGTTTAC (-): 1265826)
Lhx8 (Sequence: TTAATTAA (-): 1267764)
Lhx8 (Sequence: TTAATTAA (-): 1268971)
FOXO1 (Sequence: CTTGTTTTT (+): 1250917)
FOXO1 (Sequence: CCTGTTTTT (+): 1268084)
POU5F1 (Sequence: ATGCAAA (+): 1262115)
POU5F1 (Sequence: ATGCAAA (+): 1267290)
POU5F1 (Sequence: ATGCAAA (+): 1267651)
POU5F1 (Sequence: ATGCAAA (+): 1267880)
FOXO3_mmu (Sequence: TGTTTACA (-): 1254590)
FOXO3_mmu (Sequence: TGTTTACA (-): 1257548)
FOXO3_mmu (Sequence: TGTTTACA (-): 1259905)
FOXO3_mmu (Sequence: TGTTTACA (-): 1262865)
FOXO3_mmu (Sequence: TGTTTACA (-): 1265826)
FOXO3_mmu (Sequence: TGTTTTGA (-): 1267433)
POU2F1 (Sequence: TATGCAAAT (+): 1267879)
RHOXF1 (Sequence: GGATCA (-): 1250847)
RHOXF1 (Sequence: AGCTTA (-): 1251184)
RHOXF1 (Sequence: AGCTCA (-): 1251605)
RHOXF1 (Sequence: AGCTCA (-): 1253216)
RHOXF1 (Sequence: GGATCA (-): 1254311)
RHOXF1 (Sequence: AGCTCA (-): 1255261)
RHOXF1 (Sequence: AGCTCA (-): 1255573)
RHOXF1 (Sequence: GGCTTA (-): 1256614)
RHOXF1 (Sequence: GGATCA (-): 1257086)
RHOXF1 (Sequence: AGATCA (-): 1257094)
RHOXF1 (Sequence: GGATCA (-): 1257269)
RHOXF1 (Sequence: AGCTCA (-): 1258219)
RHOXF1 (Sequence: AGCTCA (-): 1258531)
RHOXF1 (Sequence: GGATCA (-): 1259626)
RHOXF1 (Sequence: AGCTCA (-): 1260575)
RHOXF1 (Sequence: AGCTCA (-): 1260887)
RHOXF1 (Sequence: GGCTTA (-): 1261931)
RHOXF1 (Sequence: GGATCA (-): 1262403)
RHOXF1 (Sequence: AGATCA (-): 1262411)
RHOXF1 (Sequence: GGATCA (-): 1262586)
RHOXF1 (Sequence: AGCTCA (-): 1263536)
RHOXF1 (Sequence: AGCTCA (-): 1263848)
RHOXF1 (Sequence: GGCTTA (-): 1264892)
RHOXF1 (Sequence: GGATCA (-): 1265364)
RHOXF1 (Sequence: AGATCA (-): 1265372)
RHOXF1 (Sequence: GGATCA (-): 1265547)
RHOXF1 (Sequence: AGCTCA (-): 1266497)
RHOXF1 (Sequence: AGCTCA (-): 1266809)
RHOXF1 (Sequence: GGATTA (-): 1267197)
RHOXF1 (Sequence: GGCTCA (-): 1267748)
FOXO3_mmu (Sequence: TCAAAACA (+): 1250821)
Sox5 (Sequence: ATTGTT (+): 1250833)
Sox5 (Sequence: ATTGTT (+): 1252019)
Sox5 (Sequence: ATTGTT (+): 1257072)
Sox5 (Sequence: ATTGTT (+): 1262389)
Sox5 (Sequence: ATTGTT (+): 1265350)
Sox5 (Sequence: ATTGTT (+): 1267431)
Sox5 (Sequence: ATTGTT (+): 1268952)
Sox5 (Sequence: ATTGTT (+): 1269251)
FOXO1 (Sequence: AAAAACAAG (-): 1251396)
FOXO1 (Sequence: GAAAACAAG (-): 1252368)
Nobox (Sequence: AGTAATTA (-): 1268966)
Nobox (Sequence: AGCAATTA (-): 1269335)
POU2F1 (Sequence: ATTTGAATA (-): 1261192)
POU2F1 (Sequence: ATTTGAATA (-): 1264153)
POU2F1 (Sequence: ATTTACATA (-): 1267232)
SOX9 (Sequence: TTATTGTT (+): 1268950)
POU5F1 (Sequence: TTTGCAT (-): 1251971)
RHOXF1 (Sequence: TGAGCT (+): 1251182)
RHOXF1 (Sequence: TAATCT (+): 1251433)
RHOXF1 (Sequence: TGAGCT (+): 1252502)
RHOXF1 (Sequence: TGAGCC (+): 1252893)
RHOXF1 (Sequence: TAATCT (+): 1254041)
RHOXF1 (Sequence: TAAGCC (+): 1254262)
RHOXF1 (Sequence: TGAGCC (+): 1254555)
RHOXF1 (Sequence: TAATCC (+): 1254626)
RHOXF1 (Sequence: TAATCT (+): 1256386)
RHOXF1 (Sequence: TAAGCC (+): 1257220)
RHOXF1 (Sequence: TGAGCC (+): 1257513)
RHOXF1 (Sequence: TAATCC (+): 1257584)
RHOXF1 (Sequence: TAATCT (+): 1259356)
RHOXF1 (Sequence: TAAGCC (+): 1259577)
RHOXF1 (Sequence: TGAGCC (+): 1259870)
RHOXF1 (Sequence: TAATCC (+): 1259941)
RHOXF1 (Sequence: TAATCT (+): 1261703)
RHOXF1 (Sequence: TAAGCC (+): 1262537)
RHOXF1 (Sequence: TGAGCC (+): 1262830)
RHOXF1 (Sequence: TAATCC (+): 1262901)
RHOXF1 (Sequence: TAATCT (+): 1264664)
RHOXF1 (Sequence: TAAGCC (+): 1265498)
RHOXF1 (Sequence: TGAGCC (+): 1265791)
RHOXF1 (Sequence: TAATCC (+): 1265862)
RHOXF1 (Sequence: TAATCT (+): 1267619)
RHOXF1 (Sequence: TAATCT (+): 1267734)
RHOXF1 (Sequence: TAATCT (+): 1267970)
RHOXF1 (Sequence: TAAGCT (+): 1268500)
RHOXF1 (Sequence: TGATCT (+): 1268588)
Rhox11 (Sequence: TATACAGCA (-): 1255252)
Rhox11 (Sequence: TATACAGCA (-): 1258210)
Rhox11 (Sequence: TATACAGCA (-): 1260566)
Rhox11 (Sequence: TATACAGCA (-): 1263527)
Rhox11 (Sequence: TATACAGCA (-): 1266488)
Rhox11 (Sequence: TTAACACCA (-): 1269148)
RFX4_2 (Sequence: GTATCTATG (-): 1267890)
Gata4 (Sequence: AGATAAC (-): 1252950)
Sox5 (Sequence: AACAAT (-): 1251383)
Sox5 (Sequence: AACAAT (-): 1251478)
Sox5 (Sequence: AACAAT (-): 1252466)
Sox5 (Sequence: AACAAT (-): 1252495)
Sox5 (Sequence: AACAAT (-): 1252511)
Sox5 (Sequence: AACAAT (-): 1254467)
Sox5 (Sequence: AACAAT (-): 1257425)
Sox5 (Sequence: AACAAT (-): 1259782)
Sox5 (Sequence: AACAAT (-): 1262742)
Sox5 (Sequence: AACAAT (-): 1265703)
Sox5 (Sequence: AACAAT (-): 1267375)
Sox5 (Sequence: AACAAT (-): 1268875)