Predicted piRNA cluster no. 169     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
23038087
23049040
Gene Set
RepeatMasker
Mapped
Reads
28.95
plus strand
minus strand
28.95
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00005468) Tr:4: 23038667-23038820 (-)
2. unknown (unknowndsub_v4_00005468) Tr:4: 23038204-23038412 (-)
3. unknown (unknowndsub_v4_00005469) Tr:4: 23041691-23041815 (+)
4. unknown (unknowndsub_v4_00005469) Tr:4: 23048847-23049015 (+)

RepeatMasker Annotation
1. TE-483_Dsub: 23038991-23039036 (+), Divergence to consensus: 17.4%
2. GYPSY-7_Dsub: 23041537-23041891 (-), Divergence to consensus: 0.3%
3. GYPSY-8_Dsub: 23041892-23048686 (-), Divergence to consensus: 0.3%
4. GYPSY-7_Dsub: 23048684-23049041 (-), Divergence to consensus: 0.3%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGG (-): 23038502)
SOX9 (Sequence: AACAATGA (-): 23048056)
FOXP1 (Sequence: TGTTTAC (-): 23038943)
FOXP1 (Sequence: TGTTTAC (-): 23041183)
FOXP1 (Sequence: TGTTTAC (-): 23042856)
FIGLA (Sequence: TCCAGCTGGA (-): 23038211)
FIGLA (Sequence: AACACCTGTA (-): 23045272)
Lhx8 (Sequence: CTAATTAA (-): 23039996)
Lhx8 (Sequence: TTAATTAG (-): 23048288)
Rhox11 (Sequence: TGGTGTATT (+): 23042211)
Rhox11 (Sequence: CGGTGTTAT (+): 23047992)
FOXP1 (Sequence: GTAAACA (+): 23039743)
FOXP1 (Sequence: GTAAACA (+): 23040788)
FOXO1 (Sequence: GTTGTTTTT (+): 23039557)
FOXO1 (Sequence: GTTGTTTAC (+): 23041181)
FOXO1 (Sequence: CTTGTTTAC (+): 23042854)
FOXO3_mmu (Sequence: TGTTTACA (-): 23038943)
POU2F1 (Sequence: TATTCTAAT (+): 23039260)
Nobox (Sequence: TAATTACC (+): 23040057)
Nobox (Sequence: TAATTGCT (+): 23040608)
Nobox (Sequence: TAATTGGT (+): 23040619)
Nobox (Sequence: TAATTGGT (+): 23042869)
Nobox (Sequence: TAATTAGT (+): 23048289)
RHOXF1 (Sequence: AGATTA (-): 23038112)
RHOXF1 (Sequence: AGATCA (-): 23038120)
RHOXF1 (Sequence: GGCTCA (-): 23038353)
RHOXF1 (Sequence: AGATCA (-): 23038398)
RHOXF1 (Sequence: GGCTTA (-): 23038984)
RHOXF1 (Sequence: GGCTCA (-): 23041190)
RHOXF1 (Sequence: GGATTA (-): 23041199)
RHOXF1 (Sequence: AGATTA (-): 23041604)
RHOXF1 (Sequence: AGCTCA (-): 23041926)
RHOXF1 (Sequence: GGCTCA (-): 23042127)
RHOXF1 (Sequence: AGCTTA (-): 23042582)
RHOXF1 (Sequence: GGCTTA (-): 23043367)
RHOXF1 (Sequence: GGATTA (-): 23044603)
RHOXF1 (Sequence: GGATCA (-): 23046815)
RHOXF1 (Sequence: GGCTCA (-): 23046926)
RHOXF1 (Sequence: AGCTTA (-): 23047463)
RHOXF1 (Sequence: AGATCA (-): 23047877)
RHOXF1 (Sequence: AGATTA (-): 23048754)
FOXO3_mmu (Sequence: GGAAAACA (+): 23039392)
FOXO3_mmu (Sequence: GGTAAACA (+): 23039742)
Sox5 (Sequence: ATTGTT (+): 23038440)
Sox5 (Sequence: ATTGTT (+): 23038941)
Sox5 (Sequence: ATTGTT (+): 23039150)
Sox5 (Sequence: ATTGTT (+): 23039716)
Sox5 (Sequence: ATTGTT (+): 23040200)
Sox5 (Sequence: ATTGTT (+): 23041178)
Sox5 (Sequence: ATTGTT (+): 23042200)
Sox5 (Sequence: ATTGTT (+): 23042938)
Sox5 (Sequence: ATTGTT (+): 23044680)
Sox5 (Sequence: ATTGTT (+): 23046624)
Sox5 (Sequence: ATTGTT (+): 23046880)
Sox5 (Sequence: ATTGTT (+): 23048313)
FOXO1 (Sequence: GAAAACAAC (-): 23039393)
FOXO1 (Sequence: GTAAACAAG (-): 23039743)
FOXO1 (Sequence: AAAAACAGC (-): 23039774)
FOXO1 (Sequence: GTAAACAAC (-): 23040788)
Nobox (Sequence: ACTAATTA (-): 23039995)
POU2F1 (Sequence: ATTAACATA (-): 23039999)
SOX9 (Sequence: TCATTGTT (+): 23038438)
SOX9 (Sequence: TTATTGTT (+): 23038939)
SOX9 (Sequence: TCATTGTT (+): 23039148)
SOX9 (Sequence: TTATTGTT (+): 23039714)
SOX9 (Sequence: CTATTGTT (+): 23042936)
POU5F1 (Sequence: TTTGCAT (-): 23042942)
Mybl1_1 (Sequence: TAACGGTT (-): 23042877)
A-MYB (Sequence: AGGCAGTTGG (+): 23046783)
RHOXF1 (Sequence: TGATCC (+): 23038229)
RHOXF1 (Sequence: TAATCC (+): 23039453)
RHOXF1 (Sequence: TGATCT (+): 23040258)
RHOXF1 (Sequence: TAAGCC (+): 23040541)
RHOXF1 (Sequence: TAAGCT (+): 23040747)
RHOXF1 (Sequence: TAATCC (+): 23042157)
RHOXF1 (Sequence: TGATCT (+): 23042487)
RHOXF1 (Sequence: TGAGCT (+): 23042580)
RHOXF1 (Sequence: TAATCT (+): 23043673)
RHOXF1 (Sequence: TGATCT (+): 23045203)
RHOXF1 (Sequence: TGATCT (+): 23045303)
RHOXF1 (Sequence: TGATCC (+): 23045502)
RHOXF1 (Sequence: TAAGCT (+): 23045821)
RHOXF1 (Sequence: TGAGCC (+): 23045858)
RHOXF1 (Sequence: TAAGCC (+): 23047108)
RHOXF1 (Sequence: TGAGCT (+): 23047212)
RHOXF1 (Sequence: TAATCC (+): 23047252)
RHOXF1 (Sequence: TAATCT (+): 23047398)
RHOXF1 (Sequence: TGATCT (+): 23047722)
RHOXF1 (Sequence: TGATCT (+): 23048576)
Rhox11 (Sequence: AAAACAGCA (-): 23039775)
Rhox11 (Sequence: AATACAGCG (-): 23041332)
FOXO3_hsa (Sequence: GTAAACAA (+): 23039743)
FOXO3_hsa (Sequence: GTAAACAA (+): 23040788)
RFX4_2 (Sequence: GTATCTAGG (-): 23044920)
FOXO3_hsa (Sequence: TTGTTTAC (-): 23038942)
FOXO3_hsa (Sequence: TTGTTTAC (-): 23041182)
FOXO3_hsa (Sequence: TTGTTTAC (-): 23042855)
Gata4 (Sequence: CTTATCT (+): 23038600)
Gata4 (Sequence: CTTATCT (+): 23043450)
Sox5 (Sequence: AACAAT (-): 23038502)
Sox5 (Sequence: AACAAT (-): 23039414)
Sox5 (Sequence: AACAAT (-): 23040268)
Sox5 (Sequence: AACAAT (-): 23047793)
Sox5 (Sequence: AACAAT (-): 23047974)
Sox5 (Sequence: AACAAT (-): 23048056)