Predicted piRNA cluster no. 60     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
250105
267008
Gene Set
RepeatMasker
Mapped
Reads
51.39
plus strand
minus strand
51.39
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00005677) Tr:4: 250217-250238 (+)
2. unknown (unknowndsub_v4_00005677) Tr:4: 250296-251052 (+)
3. unknown (unknowndsub_v4_00005677) Tr:4: 251110-251354 (+)
4. unknown (unknowndsub_v4_00005677) Tr:4: 251408-251576 (+)
5. unknown (unknowndsub_v4_00005677) Tr:4: 251634-252130 (+)

RepeatMasker Annotation
1. TE-621_Dsub: 252962-253031 (-), Divergence to consensus: 4.3%
2. TE-642_Dsub: 253042-253462 (+), Divergence to consensus: 4.3%
3. TE-621_Dsub: 253469-253778 (+), Divergence to consensus: 2.9%
4. TE-634_Dsub: 255769-255897 (-), Divergence to consensus: 34.2%
5. TE-640_Dsub: 256006-257634 (+), Divergence to consensus: 2.8%
6. HELITRON-2_Dsub: 257631-257770 (+), Divergence to consensus: 7.1%
7. TE-588_Dsub: 257769-258040 (+), Divergence to consensus: 5.8%
8. TE-500_Dsub: 258202-258292 (-), Divergence to consensus: 16.3%
9. TE-626_Dsub: 258294-258696 (-), Divergence to consensus: 12.4%
10. TE-626_Dsub: 258632-259065 (+), Divergence to consensus: 20.1%
11. TE-498_Dsub: 259079-259156 (-), Divergence to consensus: 29.5%
12. TE-622_Dsub: 259175-259553 (+), Divergence to consensus: 31.1%
13. CR1-4_Dsub: 259586-259719 (-), Divergence to consensus: 18.6%
14. CR1-4_Dsub: 259715-259768 (+), Divergence to consensus: 24.1%
15. CR1-4_Dsub: 259809-259903 (-), Divergence to consensus: 25.3%
16. CR1-4_Dsub: 259962-261015 (-), Divergence to consensus: 27.7%
17. GYPSY-18_Dsub: 261019-261593 (+), Divergence to consensus: 33.4%
18. GYPSY-18_Dsub: 261595-262118 (+), Divergence to consensus: 25.2%
19. CR1-4_Dsub: 262119-262379 (-), Divergence to consensus: 12.5%
20. TE-349_Dsub: 262370-262478 (-), Divergence to consensus: 16.2%
21. TE-96_Dsub: 262372-262515 (+), Divergence to consensus: 31.8%
22. TE-330_Dsub: 262384-262579 (+), Divergence to consensus: 28.8%
23. TE-622_Dsub: 262641-263003 (-), Divergence to consensus: 43.2%
24. CR1-1_Dsub: 263000-263126 (-), Divergence to consensus: 16.5%
25. CR1-4_Dsub: 263118-263298 (-), Divergence to consensus: 11.7%
26. TE-603_Dsub: 263488-263703 (+), Divergence to consensus: 18.2%
27. GYPSY-12_Dsub: 263802-263873 (-), Divergence to consensus: 1.4%
28. TE-594_Dsub: 263883-264510 (-), Divergence to consensus: 15.3%
29. GYPSY-12_Dsub: 264397-264630 (-), Divergence to consensus: 1.7%
30. TE-610_Dsub: 264693-264764 (+), Divergence to consensus: 23.7%
31. TE-165_Dsub: 265073-265090 (-), Divergence to consensus: 33.9%
32. TE-8_Dsub: 265091-265308 (+), Divergence to consensus: 37.7%
33. TE-165_Dsub: 265309-265606 (-), Divergence to consensus: 33.9%
34. TE-581_Dsub: 265394-265732 (+), Divergence to consensus: 42.9%
35. TE-387_Dsub: 265715-265892 (-), Divergence to consensus: 31.4%
36. TE-640_Dsub: 265733-265780 (+), Divergence to consensus: 34.7%
37. TE-633_Dsub: 265893-266058 (+), Divergence to consensus: 12.6%
38. TE-225_Dsub: 266031-266119 (-), Divergence to consensus: 13.6%
39. TE-581_Dsub: 266120-266384 (+), Divergence to consensus: 22.4%
40. TE-577_Dsub: 266385-266671 (-), Divergence to consensus: 24.3%
41. TE-515_Dsub: 266678-266796 (+), Divergence to consensus: 5.9%
42. TE-603_Dsub: 266777-266884 (+), Divergence to consensus: 9.3%
43. TE-556_Dsub: 266789-267324 (-), Divergence to consensus: 13.3%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 252297)
SOX9 (Sequence: AACAATGA (-): 256106)
SOX9 (Sequence: AACAATGA (-): 258454)
SOX9 (Sequence: AACAATAA (-): 264892)
SOX9 (Sequence: AACAATGA (-): 266049)
FOXP1 (Sequence: TGTTTAC (-): 258272)
FOXP1 (Sequence: TGTTTAC (-): 258407)
FOXP1 (Sequence: TGTTTAC (-): 258641)
FOXP1 (Sequence: TGTTTAC (-): 261524)
Lhx8 (Sequence: CTAATTAG (-): 254374)
Rhox11 (Sequence: CGGTGTAAA (+): 250436)
Rhox11 (Sequence: TGGTGTTAT (+): 259544)
FOXP1 (Sequence: GTAAACA (+): 253847)
FOXP1 (Sequence: GTAAACA (+): 262212)
FOXO1 (Sequence: CTTGTTTAT (+): 250156)
POU5F1 (Sequence: ATGCAAA (+): 258964)
POU5F1 (Sequence: ATGCAAA (+): 262703)
POU5F1 (Sequence: ATGCAAA (+): 266451)
FOXO3_mmu (Sequence: TGTTTACA (-): 258272)
FOXO3_mmu (Sequence: TGTTTACC (-): 258407)
FOXO3_mmu (Sequence: TGTTTACA (-): 258641)
FOXO3_mmu (Sequence: TGTTTACC (-): 261524)
POU2F1 (Sequence: TATTTTAAT (+): 257476)
POU2F1 (Sequence: TATGTAAAT (+): 262465)
Nobox (Sequence: TAATTAGT (+): 256963)
Nobox (Sequence: TAATTGCT (+): 257253)
Nobox (Sequence: TAATTAGT (+): 264836)
RHOXF1 (Sequence: AGCTTA (-): 250789)
RHOXF1 (Sequence: AGATCA (-): 250966)
RHOXF1 (Sequence: AGCTCA (-): 251406)
RHOXF1 (Sequence: GGATTA (-): 251647)
RHOXF1 (Sequence: AGATCA (-): 251742)
RHOXF1 (Sequence: GGATCA (-): 252292)
RHOXF1 (Sequence: AGCTCA (-): 253181)
RHOXF1 (Sequence: AGCTCA (-): 253838)
RHOXF1 (Sequence: AGATTA (-): 254200)
RHOXF1 (Sequence: AGCTCA (-): 254778)
RHOXF1 (Sequence: AGATCA (-): 255039)
RHOXF1 (Sequence: AGATCA (-): 255047)
RHOXF1 (Sequence: AGATCA (-): 255217)
RHOXF1 (Sequence: GGATCA (-): 255673)
RHOXF1 (Sequence: AGATTA (-): 255681)
RHOXF1 (Sequence: GGATCA (-): 256736)
RHOXF1 (Sequence: GGATTA (-): 256862)
RHOXF1 (Sequence: AGATCA (-): 260018)
RHOXF1 (Sequence: AGCTTA (-): 260214)
RHOXF1 (Sequence: GGCTTA (-): 260787)
RHOXF1 (Sequence: AGCTCA (-): 261400)
RHOXF1 (Sequence: AGATCA (-): 261730)
RHOXF1 (Sequence: AGCTTA (-): 262051)
RHOXF1 (Sequence: AGATTA (-): 263343)
RHOXF1 (Sequence: AGCTTA (-): 263397)
RHOXF1 (Sequence: GGATTA (-): 264453)
RHOXF1 (Sequence: AGATCA (-): 266010)
RHOXF1 (Sequence: GGCTCA (-): 266626)
FOXO3_mmu (Sequence: TCAAAACA (+): 250462)
FOXO3_mmu (Sequence: TGAAAACA (+): 253539)
Sox5 (Sequence: ATTGTT (+): 251459)
Sox5 (Sequence: ATTGTT (+): 251951)
Sox5 (Sequence: ATTGTT (+): 252240)
Sox5 (Sequence: ATTGTT (+): 252564)
Sox5 (Sequence: ATTGTT (+): 253504)
Sox5 (Sequence: ATTGTT (+): 259896)
Sox5 (Sequence: ATTGTT (+): 260923)
Sox5 (Sequence: ATTGTT (+): 261760)
Sox5 (Sequence: ATTGTT (+): 264819)
Sox5 (Sequence: ATTGTT (+): 266743)
FOXO1 (Sequence: GAAAACAAC (-): 253540)
Nobox (Sequence: ACTAATTA (-): 253886)
Nobox (Sequence: ACTAATTA (-): 254373)
Nobox (Sequence: AGTAATTA (-): 260695)
SOX9 (Sequence: CCATTGTT (+): 252238)
SOX9 (Sequence: TCATTGTT (+): 259894)
SOX9 (Sequence: TTATTGTT (+): 260921)
SOX9 (Sequence: CTATTGTT (+): 266741)
POU5F1 (Sequence: TTTGCAT (-): 253688)
POU5F1 (Sequence: TTTGCAT (-): 258675)
POU5F1 (Sequence: TTTGCAT (-): 259307)
RFX4_1 (Sequence: CTTGGCAAC (+): 258915)
RHOXF1 (Sequence: TGAGCT (+): 250174)
RHOXF1 (Sequence: TAAGCC (+): 250511)
RHOXF1 (Sequence: TAATCT (+): 251216)
RHOXF1 (Sequence: TGAGCC (+): 251620)
RHOXF1 (Sequence: TAAGCT (+): 251770)
RHOXF1 (Sequence: TAAGCC (+): 253305)
RHOXF1 (Sequence: TGATCC (+): 254081)
RHOXF1 (Sequence: TGAGCC (+): 254800)
RHOXF1 (Sequence: TAAGCT (+): 255612)
RHOXF1 (Sequence: TGATCC (+): 256380)
RHOXF1 (Sequence: TGATCC (+): 256471)
RHOXF1 (Sequence: TAAGCT (+): 257153)
RHOXF1 (Sequence: TAAGCC (+): 257754)
RHOXF1 (Sequence: TAAGCC (+): 258173)
RHOXF1 (Sequence: TAAGCC (+): 258546)
RHOXF1 (Sequence: TAATCT (+): 258982)
RHOXF1 (Sequence: TAATCT (+): 258991)
RHOXF1 (Sequence: TAAGCT (+): 259340)
RHOXF1 (Sequence: TGAGCT (+): 261398)
RHOXF1 (Sequence: TGAGCT (+): 264568)
RHOXF1 (Sequence: TGAGCT (+): 265485)
RHOXF1 (Sequence: TAAGCT (+): 265681)
RHOXF1 (Sequence: TGAGCC (+): 265898)
RHOXF1 (Sequence: TAAGCT (+): 266347)
RHOXF1 (Sequence: TAAGCT (+): 266467)
RHOXF1 (Sequence: TGATCT (+): 266554)
Rhox11 (Sequence: TTAACAGCG (-): 250289)
Rhox11 (Sequence: TTTACACCA (-): 253464)
Rhox11 (Sequence: TTAACACCA (-): 260009)
Rhox11 (Sequence: AATACACCA (-): 260319)
RFX4_2 (Sequence: GTATCTATG (-): 262532)
Gata4 (Sequence: AGATAAC (-): 254104)
Gata4 (Sequence: AGATAAC (-): 258037)
Gata4 (Sequence: AGATAAG (-): 259676)
Gata4 (Sequence: AGATAAG (-): 260348)
FOXO3_hsa (Sequence: TTGTTTAC (-): 258271)
FOXO3_hsa (Sequence: TTGTTTAC (-): 258406)
FOXO3_hsa (Sequence: ATGTTTAC (-): 258640)
FOXO3_hsa (Sequence: TTGTTTAC (-): 261523)
Gata4 (Sequence: GTTATCT (+): 262626)
Sox5 (Sequence: AACAAT (-): 250130)
Sox5 (Sequence: AACAAT (-): 251372)
Sox5 (Sequence: AACAAT (-): 252297)
Sox5 (Sequence: AACAAT (-): 252801)
Sox5 (Sequence: AACAAT (-): 253148)
Sox5 (Sequence: AACAAT (-): 254879)
Sox5 (Sequence: AACAAT (-): 255324)
Sox5 (Sequence: AACAAT (-): 255655)
Sox5 (Sequence: AACAAT (-): 256106)
Sox5 (Sequence: AACAAT (-): 257290)
Sox5 (Sequence: AACAAT (-): 258454)
Sox5 (Sequence: AACAAT (-): 264892)
Sox5 (Sequence: AACAAT (-): 265350)
Sox5 (Sequence: AACAAT (-): 266049)