Predicted piRNA cluster no. 6     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
cDot_v4 
972144
979428
Gene Set
RepeatMasker
Mapped
Reads
51.33
plus strand
minus strand
51.33
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-281_Dsub: 972028-972202 (-), Divergence to consensus: 47.5%
2. TE-596_Dsub: 972068-972213 (+), Divergence to consensus: 32.8%
3. TE-572_Dsub: 972206-972307 (+), Divergence to consensus: 36%
4. TE-330_Dsub: 972227-972346 (-), Divergence to consensus: 40%
5. HELITRON-4_Dsub: 972347-972421 (-), Divergence to consensus: 23.2%
6. TE-590_Dsub: 972364-972793 (+), Divergence to consensus: 21.1%
7. TE-524_Dsub: 972813-972946 (+), Divergence to consensus: 1.5%
8. TE-567_Dsub: 972944-974596 (-), Divergence to consensus: 2%
9. TE-124_Dsub: 974548-974604 (+), Divergence to consensus: 26.3%
10. TE-524_Dsub: 974592-975121 (+), Divergence to consensus: 12.1%
11. TE-84_Dsub: 975177-975279 (+), Divergence to consensus: 35.4%
12. TE-556_Dsub: 975364-975389 (-), Divergence to consensus: 10.4%
13. TE-560_Dsub: 975390-975507 (+), Divergence to consensus: 24.2%
14. TE-556_Dsub: 975508-976195 (-), Divergence to consensus: 10.4%
15. TE-593_Dsub: 976173-976344 (-), Divergence to consensus: 21.6%
16. TE-524_Dsub: 976473-976890 (-), Divergence to consensus: 15.7%
17. TE-618_Dsub: 976948-977798 (-), Divergence to consensus: 28.3%
18. TE-560_Dsub: 977491-978065 (+), Divergence to consensus: 29.3%
19. TE-560_Dsub: 977801-978231 (-), Divergence to consensus: 49.2%
20. TE-613_Dsub: 978334-978378 (+), Divergence to consensus: 20%
21. TE-322_Dsub: 978690-978850 (-), Divergence to consensus: 19.2%
22. TE-640_Dsub: 978838-979071 (-), Divergence to consensus: 23.3%
23. TE-165_Dsub: 978880-979094 (+), Divergence to consensus: 39.5%
24. TE-566_Dsub: 979097-979322 (+), Divergence to consensus: 32.3%
25. TE-633_Dsub: 979140-979482 (-), Divergence to consensus: 13.6%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 974277)
FIGLA (Sequence: TCCACGTGTT (-): 974087)
FOXP1 (Sequence: GTAAACA (+): 976422)
FOXO1 (Sequence: CTTGTTTTC (+): 978201)
FOXO1 (Sequence: CCTGTTTAT (+): 978206)
POU5F1 (Sequence: ATGCAAA (+): 975934)
FOXO3_mmu (Sequence: TGTTTTCA (-): 977583)
Nobox (Sequence: TAATTGCT (+): 974525)
RHOXF1 (Sequence: AGATTA (-): 972343)
RHOXF1 (Sequence: AGCTTA (-): 973880)
RHOXF1 (Sequence: AGCTTA (-): 975208)
RHOXF1 (Sequence: GGCTCA (-): 975884)
RHOXF1 (Sequence: AGCTTA (-): 976250)
RHOXF1 (Sequence: AGCTTA (-): 976371)
RHOXF1 (Sequence: AGCTCA (-): 976487)
RHOXF1 (Sequence: GGATCA (-): 976579)
RHOXF1 (Sequence: GGATCA (-): 977126)
RHOXF1 (Sequence: GGCTCA (-): 977281)
RHOXF1 (Sequence: AGCTTA (-): 977434)
RHOXF1 (Sequence: GGCTCA (-): 979145)
FOXO3_mmu (Sequence: TGTAAACA (+): 976421)
FOXO3_mmu (Sequence: GCAAAACA (+): 978715)
RFX4_1 (Sequence: GTTGCCACG (-): 976206)
Sox5 (Sequence: ATTGTT (+): 977581)
Sox5 (Sequence: ATTGTT (+): 977973)
FOXO1 (Sequence: ATAAACAGC (-): 975661)
FOXO1 (Sequence: AAAAACAAG (-): 977910)
Mybl1_1 (Sequence: AACCGTTA (+): 976120)
Mybl1_1 (Sequence: AACCGTTA (+): 979077)
POU2F1 (Sequence: ATTTACATA (-): 972352)
Mybl1_1 (Sequence: TAACGGTT (-): 978901)
RHOXF1 (Sequence: TGATCC (+): 973637)
RHOXF1 (Sequence: TGAGCT (+): 973878)
RHOXF1 (Sequence: TAAGCT (+): 974002)
RHOXF1 (Sequence: TGATCC (+): 974983)
RHOXF1 (Sequence: TGAGCT (+): 975075)
RHOXF1 (Sequence: TGATCC (+): 975748)
RHOXF1 (Sequence: TGATCT (+): 975772)
RHOXF1 (Sequence: TGAGCT (+): 976248)
RHOXF1 (Sequence: TAATCT (+): 977329)
RHOXF1 (Sequence: TGATCT (+): 978300)
RHOXF1 (Sequence: TGAGCT (+): 978675)
RHOXF1 (Sequence: TGATCT (+): 978787)
RHOXF1 (Sequence: TGATCC (+): 978797)
RHOXF1 (Sequence: TGATCT (+): 978811)
RHOXF1 (Sequence: TGAGCC (+): 979176)
Rhox11 (Sequence: TAAACAGCG (-): 975662)
FOXO3_hsa (Sequence: GTAAACAA (+): 976422)
Gata4 (Sequence: AGATAAC (-): 975142)
Sox5 (Sequence: AACAAT (-): 972540)
Sox5 (Sequence: AACAAT (-): 974277)
Sox5 (Sequence: AACAAT (-): 976278)