Predicted piRNA cluster no. 29     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrA_v4 
22915000
22940839
Gene Set
RepeatMasker
Mapped
Reads
469.41
plus strand
minus strand
469.41
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-631_Dsub: 22914591-22916025 (-), Divergence to consensus: 7.5%
2. TE-600_Dsub: 22915996-22916029 (+), Divergence to consensus: 8.8%
3. TE-631_Dsub: 22916024-22916981 (-), Divergence to consensus: 7.8%
4. TE-620_Dsub: 22916958-22917109 (-), Divergence to consensus: 22.3%
5. TE-640_Dsub: 22916980-22917381 (+), Divergence to consensus: 7.2%
6. TE-631_Dsub: 22917181-22918684 (-), Divergence to consensus: 9.7%
7. TE-600_Dsub: 22918655-22918688 (+), Divergence to consensus: 8.8%
8. TE-631_Dsub: 22918683-22919640 (-), Divergence to consensus: 7.8%
9. TE-620_Dsub: 22919617-22919768 (-), Divergence to consensus: 22.3%
10. TE-640_Dsub: 22919639-22920040 (+), Divergence to consensus: 7.2%
11. TE-631_Dsub: 22919840-22921962 (-), Divergence to consensus: 9.2%
12. TE-600_Dsub: 22921933-22921966 (+), Divergence to consensus: 8.8%
13. TE-631_Dsub: 22921961-22925716 (-), Divergence to consensus: 7.1%
14. TE-541_Dsub: 22926422-22927436 (+), Divergence to consensus: 39.5%
15. TE-427_Dsub: 22927525-22927893 (+), Divergence to consensus: 38.7%
16. TE-541_Dsub: 22927993-22928474 (+), Divergence to consensus: 36.1%
17. TE-626_Dsub: 22928602-22928664 (+), Divergence to consensus: 15.9%
18. TE-427_Dsub: 22928720-22928823 (+), Divergence to consensus: 38.4%
19. TE-427_Dsub: 22928935-22928967 (+), Divergence to consensus: 12.1%
20. TE-587_Dsub: 22929120-22929153 (+), Divergence to consensus: 8.8%
21. TE-593_Dsub: 22930141-22930541 (+), Divergence to consensus: 3.4%
22. TE-593_Dsub: 22930499-22930566 (-), Divergence to consensus: 23.5%
23. TE-320_Dsub: 22934009-22934044 (+), Divergence to consensus: 13.9%
24. TE-640_Dsub: 22934017-22934173 (-), Divergence to consensus: 11.6%
25. TE-223_Dsub: 22934125-22934180 (+), Divergence to consensus: 12.7%
26. TE-492_Dsub: 22934173-22934238 (-), Divergence to consensus: 27.6%
27. TE-454_Dsub: 22934290-22934765 (-), Divergence to consensus: 9.2%
28. TE-455_Dsub: 22934763-22935233 (+), Divergence to consensus: 8.3%
29. TE-455_Dsub: 22938147-22938607 (+), Divergence to consensus: 7.6%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 22926926)
SOX9 (Sequence: AACAATAA (-): 22927075)
SOX9 (Sequence: AACAATGG (-): 22931651)
SOX9 (Sequence: AACAATAA (-): 22931710)
RFX4_2 (Sequence: CGTGGATAC (+): 22927897)
FOXP1 (Sequence: TGTTTAC (-): 22938066)
Lhx8 (Sequence: TTAATTAG (-): 22930642)
Lhx8 (Sequence: TTAATTAA (-): 22931556)
Lhx8 (Sequence: TTAATTAA (-): 22932958)
Lhx8 (Sequence: TTAATTAA (-): 22933041)
Lhx8 (Sequence: CTAATTAA (-): 22933505)
Rhox11 (Sequence: TGCTGTTAT (+): 22929190)
Rhox11 (Sequence: TGGTGTAAT (+): 22932141)
Rhox11 (Sequence: TGCTGTATT (+): 22933484)
Rhox11 (Sequence: TGGTGTTTT (+): 22935775)
Rhox11 (Sequence: TGGTGTTTT (+): 22939149)
SPZ1 (Sequence: GGGGTATGAG (+): 22931974)
FOXO1 (Sequence: GTTGTTTTT (+): 22927215)
FOXO1 (Sequence: GTTGTTTTT (+): 22927534)
FOXO1 (Sequence: GTTGTTTTT (+): 22928807)
FOXO1 (Sequence: GTTGTTTTT (+): 22935848)
FOXO1 (Sequence: GTTGTTTTT (+): 22939222)
POU5F1 (Sequence: ATGCAAA (+): 22917149)
POU5F1 (Sequence: ATGCAAA (+): 22919808)
POU5F1 (Sequence: ATGCAAA (+): 22928910)
POU5F1 (Sequence: ATGCAAA (+): 22936678)
POU5F1 (Sequence: ATGCAAA (+): 22937407)
POU5F1 (Sequence: ATGCAAA (+): 22940052)
POU5F1 (Sequence: ATGCAAA (+): 22940781)
FOXO3_mmu (Sequence: TGTTTAGA (-): 22916420)
FOXO3_mmu (Sequence: TGTTTAGA (-): 22919079)
FOXO3_mmu (Sequence: TGTTTAGA (-): 22921200)
FOXO3_mmu (Sequence: TGTTTAGA (-): 22922964)
FOXO3_mmu (Sequence: TGTTTAGA (-): 22923586)
FOXO3_mmu (Sequence: TGTTTAGA (-): 22924828)
FOXO3_mmu (Sequence: TGTTTAGA (-): 22925446)
FOXO3_mmu (Sequence: TGTTTTGC (-): 22928707)
POU2F1 (Sequence: TATTTTAAT (+): 22928216)
POU2F1 (Sequence: TATGCAAAT (+): 22937406)
POU2F1 (Sequence: TATGCAAAT (+): 22940780)
Nobox (Sequence: TAATTAGT (+): 22930610)
Nobox (Sequence: TAATTAGT (+): 22930643)
RHOXF1 (Sequence: GGATTA (-): 22926412)
RHOXF1 (Sequence: GGCTCA (-): 22926977)
RHOXF1 (Sequence: AGATCA (-): 22927588)
RHOXF1 (Sequence: AGATTA (-): 22928898)
RHOXF1 (Sequence: GGATTA (-): 22932438)
RHOXF1 (Sequence: GGATTA (-): 22936056)
RHOXF1 (Sequence: AGATCA (-): 22936350)
RHOXF1 (Sequence: AGATTA (-): 22936511)
RHOXF1 (Sequence: AGATTA (-): 22936954)
RHOXF1 (Sequence: AGCTCA (-): 22937040)
RHOXF1 (Sequence: AGATTA (-): 22937402)
RHOXF1 (Sequence: AGATTA (-): 22938009)
RHOXF1 (Sequence: GGATTA (-): 22939430)
RHOXF1 (Sequence: AGATCA (-): 22939724)
RHOXF1 (Sequence: AGATTA (-): 22939885)
RHOXF1 (Sequence: AGATTA (-): 22940328)
RHOXF1 (Sequence: AGCTCA (-): 22940414)
RHOXF1 (Sequence: AGATTA (-): 22940776)
FOXO3_mmu (Sequence: GCTAAACA (+): 22930317)
FOXO3_mmu (Sequence: TGAAAACA (+): 22937224)
FOXO3_mmu (Sequence: GGAAAACA (+): 22937377)
FOXO3_mmu (Sequence: TGAAAACA (+): 22940598)
FOXO3_mmu (Sequence: GGAAAACA (+): 22940751)
Sox5 (Sequence: ATTGTT (+): 22928191)
Sox5 (Sequence: ATTGTT (+): 22928223)
Sox5 (Sequence: ATTGTT (+): 22929200)
Sox5 (Sequence: ATTGTT (+): 22930200)
Sox5 (Sequence: ATTGTT (+): 22933478)
Sox5 (Sequence: ATTGTT (+): 22933529)
Sox5 (Sequence: ATTGTT (+): 22934904)
Sox5 (Sequence: ATTGTT (+): 22935555)
Sox5 (Sequence: ATTGTT (+): 22938278)
Sox5 (Sequence: ATTGTT (+): 22938929)
FOXO1 (Sequence: GAAAACAGC (-): 22937225)
FOXO1 (Sequence: GAAAACAGC (-): 22940599)
Nobox (Sequence: ACCAATTA (-): 22915311)
Nobox (Sequence: ACCAATTA (-): 22915917)
Nobox (Sequence: ACCAATTA (-): 22916457)
Nobox (Sequence: ACCAATTA (-): 22917970)
Nobox (Sequence: ACCAATTA (-): 22918576)
Nobox (Sequence: ACCAATTA (-): 22919116)
Nobox (Sequence: ACCAATTA (-): 22920629)
Nobox (Sequence: ACCAATTA (-): 22921236)
Nobox (Sequence: ACCAATTA (-): 22921854)
Nobox (Sequence: ACCAATTA (-): 22922393)
Nobox (Sequence: ACCAATTA (-): 22923000)
Nobox (Sequence: ACCAATTA (-): 22923622)
Nobox (Sequence: ACCAATTA (-): 22924241)
Nobox (Sequence: ACCAATTA (-): 22924864)
Nobox (Sequence: ACCAATTA (-): 22925482)
Nobox (Sequence: GGCAATTA (-): 22930847)
Nobox (Sequence: GCCAATTA (-): 22932118)
Nobox (Sequence: ACTAATTA (-): 22933504)
Nobox (Sequence: GGTAATTA (-): 22936487)
Nobox (Sequence: GGTAATTA (-): 22939861)
POU2F1 (Sequence: ATTAAAATA (-): 22932693)
POU2F1 (Sequence: ATTTGCATA (-): 22935347)
POU2F1 (Sequence: ATTTACATA (-): 22935362)
POU2F1 (Sequence: ATTTGAATA (-): 22936136)
POU2F1 (Sequence: ATTTACATA (-): 22937269)
POU2F1 (Sequence: ATTTGCATA (-): 22938721)
POU2F1 (Sequence: ATTTACATA (-): 22938736)
POU2F1 (Sequence: ATTTGAATA (-): 22939510)
POU2F1 (Sequence: ATTTACATA (-): 22940643)
SOX9 (Sequence: CTATTGTT (+): 22928189)
SOX9 (Sequence: TTATTGTT (+): 22929198)
SOX9 (Sequence: TTATTGTT (+): 22933476)
POU5F1 (Sequence: TTTGCAT (-): 22927302)
POU5F1 (Sequence: TTTGCAT (-): 22927501)
POU5F1 (Sequence: TTTGCAT (-): 22927512)
POU5F1 (Sequence: TTTGCAT (-): 22928260)
POU5F1 (Sequence: TTTGCAT (-): 22928710)
POU5F1 (Sequence: TTTGCAT (-): 22928781)
POU5F1 (Sequence: TTTGCAT (-): 22935348)
POU5F1 (Sequence: TTTGCAT (-): 22938722)
RHOXF1 (Sequence: TAATCT (+): 22915156)
RHOXF1 (Sequence: TAATCT (+): 22915542)
RHOXF1 (Sequence: TAATCT (+): 22915762)
RHOXF1 (Sequence: TAATCT (+): 22916080)
RHOXF1 (Sequence: TAATCT (+): 22916301)
RHOXF1 (Sequence: TAATCT (+): 22916700)
RHOXF1 (Sequence: TAATCT (+): 22916920)
RHOXF1 (Sequence: TGATCT (+): 22916987)
RHOXF1 (Sequence: TAATCT (+): 22917594)
RHOXF1 (Sequence: TAATCT (+): 22917815)
RHOXF1 (Sequence: TAATCT (+): 22918201)
RHOXF1 (Sequence: TAATCT (+): 22918421)
RHOXF1 (Sequence: TAATCT (+): 22918739)
RHOXF1 (Sequence: TAATCT (+): 22918960)
RHOXF1 (Sequence: TAATCT (+): 22919359)
RHOXF1 (Sequence: TAATCT (+): 22919579)
RHOXF1 (Sequence: TGATCT (+): 22919646)
RHOXF1 (Sequence: TAATCT (+): 22920253)
RHOXF1 (Sequence: TAATCT (+): 22920474)
RHOXF1 (Sequence: TAATCT (+): 22920860)
RHOXF1 (Sequence: TAATCT (+): 22921081)
RHOXF1 (Sequence: TAATCT (+): 22921479)
RHOXF1 (Sequence: TAATCT (+): 22921699)
RHOXF1 (Sequence: TAATCT (+): 22922017)
RHOXF1 (Sequence: TAATCT (+): 22922238)
RHOXF1 (Sequence: TAATCT (+): 22922624)
RHOXF1 (Sequence: TAATCT (+): 22922845)
RHOXF1 (Sequence: TAATCT (+): 22923247)
RHOXF1 (Sequence: TAATCT (+): 22923467)
RHOXF1 (Sequence: TAATCT (+): 22923865)
RHOXF1 (Sequence: TAATCT (+): 22924488)
RHOXF1 (Sequence: TAATCT (+): 22924709)
RHOXF1 (Sequence: TAATCT (+): 22925107)
RHOXF1 (Sequence: TAATCT (+): 22925327)
RHOXF1 (Sequence: TAATCT (+): 22927717)
RHOXF1 (Sequence: TGATCT (+): 22927834)
RHOXF1 (Sequence: TGATCT (+): 22928210)
RHOXF1 (Sequence: TGATCC (+): 22928552)
RHOXF1 (Sequence: TGATCT (+): 22928726)
RHOXF1 (Sequence: TGAGCT (+): 22929164)
RHOXF1 (Sequence: TAAGCC (+): 22930143)
RHOXF1 (Sequence: TGATCT (+): 22930311)
RHOXF1 (Sequence: TGAGCC (+): 22931024)
RHOXF1 (Sequence: TAATCT (+): 22932146)
RHOXF1 (Sequence: TAAGCT (+): 22933601)
RHOXF1 (Sequence: TAAGCT (+): 22934861)
RHOXF1 (Sequence: TGAGCC (+): 22935213)
RHOXF1 (Sequence: TAATCT (+): 22935294)
RHOXF1 (Sequence: TAATCT (+): 22937917)
RHOXF1 (Sequence: TGAGCT (+): 22938088)
RHOXF1 (Sequence: TGAGCC (+): 22938587)
RHOXF1 (Sequence: TAATCT (+): 22938668)
Rhox11 (Sequence: AAAACAGCA (-): 22937226)
Rhox11 (Sequence: AAAACAGCA (-): 22940600)
RFX4_2 (Sequence: GTAACTAAG (-): 22932843)
Gata4 (Sequence: AGATAAG (-): 22930030)
Gata4 (Sequence: AGATAAG (-): 22936658)
Gata4 (Sequence: AGATAAG (-): 22940032)
FOXO3_hsa (Sequence: ATGTTTAC (-): 22938065)
Sox5 (Sequence: AACAAT (-): 22915693)
Sox5 (Sequence: AACAAT (-): 22916851)
Sox5 (Sequence: AACAAT (-): 22918352)
Sox5 (Sequence: AACAAT (-): 22919510)
Sox5 (Sequence: AACAAT (-): 22921630)
Sox5 (Sequence: AACAAT (-): 22923398)
Sox5 (Sequence: AACAAT (-): 22925258)
Sox5 (Sequence: AACAAT (-): 22926926)
Sox5 (Sequence: AACAAT (-): 22927075)
Sox5 (Sequence: AACAAT (-): 22928199)
Sox5 (Sequence: AACAAT (-): 22929955)
Sox5 (Sequence: AACAAT (-): 22931651)
Sox5 (Sequence: AACAAT (-): 22931710)
Sox5 (Sequence: AACAAT (-): 22932666)
Sox5 (Sequence: AACAAT (-): 22933048)
Sox5 (Sequence: AACAAT (-): 22933351)
Sox5 (Sequence: AACAAT (-): 22934226)
Sox5 (Sequence: AACAAT (-): 22934524)
Sox5 (Sequence: AACAAT (-): 22934633)
Sox5 (Sequence: AACAAT (-): 22934776)
Sox5 (Sequence: AACAAT (-): 22937782)
Sox5 (Sequence: AACAAT (-): 22938150)