Predicted piRNA cluster no. 33     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrE_v4 
272116
279955
Gene Set
RepeatMasker
Mapped
Reads
21.58
plus strand
minus strand
21.58
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00010515) Tr:4: 270952-272147 (+)
2. unknown (unknowndsub_v4_00010515) Tr:4: 277099-277569 (+)

RepeatMasker Annotation
1. TE-454_Dsub: 272325-272820 (-), Divergence to consensus: 28.4%
2. TE-607_Dsub: 272923-272957 (+), Divergence to consensus: 25.4%
3. TE-640_Dsub: 272958-273237 (-), Divergence to consensus: 22.5%
4. TE-566_Dsub: 273004-273288 (-), Divergence to consensus: 24.5%
5. TE-607_Dsub: 273289-273593 (+), Divergence to consensus: 25.4%
6. TE-633_Dsub: 273594-274128 (-), Divergence to consensus: 9.3%
7. TE-577_Dsub: 274123-274298 (+), Divergence to consensus: 17.2%
8. TE-607_Dsub: 274129-274150 (+), Divergence to consensus: 25.4%
9. TABOR-1_Dsub: 274299-274425 (-), Divergence to consensus: 10.2%
10. TE-500_Dsub: 274501-274539 (+), Divergence to consensus: 7.7%
11. TE-500_Dsub: 274543-274632 (+), Divergence to consensus: 15.9%
12. TE-583_Dsub: 274645-274810 (-), Divergence to consensus: 9.6%
13. TE-457_Dsub: 274733-275213 (+), Divergence to consensus: 6.6%
14. HELITRON-3_Dsub: 275185-275296 (-), Divergence to consensus: 24.9%
15. TE-562_Dsub: 275203-275311 (+), Divergence to consensus: 30.6%
16. TE-337_Dsub: 275239-275320 (-), Divergence to consensus: 33%
17. TE-457_Dsub: 275286-275378 (+), Divergence to consensus: 23.6%
18. TE-387_Dsub: 275368-275422 (-), Divergence to consensus: 3.6%
19. TE-633_Dsub: 275374-275701 (+), Divergence to consensus: 3.6%
20. TE-457_Dsub: 275706-276226 (-), Divergence to consensus: 18.7%
21. TE-337_Dsub: 276192-276273 (+), Divergence to consensus: 33%
22. TE-562_Dsub: 276201-276309 (-), Divergence to consensus: 30.6%
23. HELITRON-3_Dsub: 276216-276327 (+), Divergence to consensus: 24.9%
24. TE-457_Dsub: 276299-276908 (-), Divergence to consensus: 10.6%
25. TE-617_Dsub: 277642-277838 (-), Divergence to consensus: 19.4%
26. TE-436_Dsub: 277853-277917 (+), Divergence to consensus: 23.1%
27. TE-622_Dsub: 277864-277981 (-), Divergence to consensus: 19.7%
28. TE-498_Dsub: 277997-278026 (+), Divergence to consensus: 3.3%
29. TE-322_Dsub: 278035-278156 (+), Divergence to consensus: 19.7%
30. TE-452_Dsub: 278166-278238 (-), Divergence to consensus: 9.8%
31. TE-436_Dsub: 278188-278255 (+), Divergence to consensus: 12.9%
32. CR1-1_Dsub: 278232-278924 (+), Divergence to consensus: 28%
33. CR1-4_Dsub: 278922-279355 (+), Divergence to consensus: 28.1%
34. CR1-4_Dsub: 279384-280063 (+), Divergence to consensus: 28.1%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAA (-): 274501)
SOX9 (Sequence: AACAATAA (-): 279289)
FOXP1 (Sequence: TGTTTAC (-): 278095)
FOXP1 (Sequence: TGTTTAC (-): 278434)
FIGLA (Sequence: TCCACGTGTA (-): 273165)
FIGLA (Sequence: AACAGCTGTT (-): 278689)
Rhox11 (Sequence: CGCTGTATT (+): 273191)
Rhox11 (Sequence: TGCTGTATT (+): 273201)
Rhox11 (Sequence: TGCTGTAAT (+): 275069)
Rhox11 (Sequence: TGGTGTTAA (+): 279931)
FOXP1 (Sequence: GTAAACA (+): 279226)
SPZ1 (Sequence: AGGGTTTCAG (+): 279607)
FOXO1 (Sequence: CTTGTTTTT (+): 272877)
FOXO1 (Sequence: CCTGTTTTT (+): 274518)
POU5F1 (Sequence: ATGCAAA (+): 276138)
FOXO3_mmu (Sequence: TGTTTTCA (-): 272139)
FOXO3_mmu (Sequence: TGTTTACC (-): 278434)
POU2F1 (Sequence: TATTTAAAT (+): 272487)
Nobox (Sequence: TAATTACT (+): 277077)
RHOXF1 (Sequence: GGCTCA (-): 273845)
RHOXF1 (Sequence: AGATCA (-): 274160)
RHOXF1 (Sequence: GGATCA (-): 274174)
RHOXF1 (Sequence: GGATCA (-): 274184)
RHOXF1 (Sequence: GGCTCA (-): 274265)
RHOXF1 (Sequence: AGCTCA (-): 276115)
RHOXF1 (Sequence: GGCTTA (-): 276906)
RHOXF1 (Sequence: GGCTTA (-): 276927)
RHOXF1 (Sequence: GGATTA (-): 277243)
RHOXF1 (Sequence: GGCTCA (-): 277254)
RHOXF1 (Sequence: AGATTA (-): 277697)
RHOXF1 (Sequence: GGCTTA (-): 277723)
RHOXF1 (Sequence: AGCTTA (-): 278383)
RHOXF1 (Sequence: AGCTCA (-): 279451)
RHOXF1 (Sequence: AGCTCA (-): 279514)
FOXO3_mmu (Sequence: TCTAAACA (+): 279205)
Sox5 (Sequence: ATTGTT (+): 272137)
Sox5 (Sequence: ATTGTT (+): 272433)
Sox5 (Sequence: ATTGTT (+): 274559)
Sox5 (Sequence: ATTGTT (+): 275175)
Sox5 (Sequence: ATTGTT (+): 275348)
Sox5 (Sequence: ATTGTT (+): 279091)
Sox5 (Sequence: ATTGTT (+): 279324)
Mybl1_1 (Sequence: AACCGTTA (+): 274069)
POU5F1 (Sequence: TTTGCAT (-): 272188)
POU5F1 (Sequence: TTTGCAT (-): 273133)
POU5F1 (Sequence: TTTGCAT (-): 275368)
POU5F1 (Sequence: TTTGCAT (-): 275928)
POU5F1 (Sequence: TTTGCAT (-): 277416)
Mybl1_1 (Sequence: TAACGGTT (-): 275426)
RHOXF1 (Sequence: TGATCT (+): 272544)
RHOXF1 (Sequence: TGAGCT (+): 272819)
RHOXF1 (Sequence: TGAGCC (+): 273041)
RHOXF1 (Sequence: TGAGCC (+): 273184)
RHOXF1 (Sequence: TAAGCT (+): 273570)
RHOXF1 (Sequence: TAAGCT (+): 273661)
RHOXF1 (Sequence: TGATCC (+): 273723)
RHOXF1 (Sequence: TGATCT (+): 273747)
RHOXF1 (Sequence: TGAGCC (+): 275513)
RHOXF1 (Sequence: TGAGCC (+): 275652)
RHOXF1 (Sequence: TGAGCT (+): 277930)
RHOXF1 (Sequence: TGAGCT (+): 278381)
RHOXF1 (Sequence: TAATCC (+): 279294)
RHOXF1 (Sequence: TAATCT (+): 279475)
RHOXF1 (Sequence: TAATCT (+): 279619)
RHOXF1 (Sequence: TAAGCT (+): 279819)
RHOXF1 (Sequence: TGATCT (+): 279925)
Rhox11 (Sequence: ATTACAGCA (-): 276428)
Gata4 (Sequence: AGATAAC (-): 274308)
FOXO3_hsa (Sequence: TTGTTTAC (-): 278094)
Gata4 (Sequence: GTTATCT (+): 273790)
Sox5 (Sequence: AACAAT (-): 274501)
Sox5 (Sequence: AACAAT (-): 274867)
Sox5 (Sequence: AACAAT (-): 276159)
Sox5 (Sequence: AACAAT (-): 276332)
Sox5 (Sequence: AACAAT (-): 276424)
Sox5 (Sequence: AACAAT (-): 277595)
Sox5 (Sequence: AACAAT (-): 279289)