Predicted piRNA cluster no. 9     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
cDot_v4 
1377566
1410011
Gene Set
RepeatMasker
Mapped
Reads
3462.09
plus strand
minus strand
3462.09
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00013129) Tr:4: 1376569-1377655 (+)

RepeatMasker Annotation
1. TE-330_Dsub: 1378030-1378139 (+), Divergence to consensus: 37.2%
2. TE-323_Dsub: 1378045-1378104 (-), Divergence to consensus: 20%
3. HELITRON-3_Dsub: 1378105-1378203 (-), Divergence to consensus: 46.3%
4. TE-231_Dsub: 1378182-1378245 (+), Divergence to consensus: 23.4%
5. TE-568_Dsub: 1378743-1378801 (-), Divergence to consensus: 23.7%
6. TE-227_Dsub: 1380024-1380038 (+), Divergence to consensus: 26%
7. HELITRON-3_Dsub: 1380039-1380084 (-), Divergence to consensus: 17.3%
8. TE-124_Dsub: 1380065-1380103 (-), Divergence to consensus: 12.8%
9. TE-608_Dsub: 1380081-1381521 (+), Divergence to consensus: 3.8%
10. TE-608_Dsub: 1380957-1381716 (-), Divergence to consensus: 2.9%
11. TE-622_Dsub: 1382977-1383302 (-), Divergence to consensus: 21.8%
12. TE-320_Dsub: 1384122-1384266 (+), Divergence to consensus: 20.4%
13. TE-556_Dsub: 1384157-1384866 (-), Divergence to consensus: 16.6%
14. TE-291_Dsub: 1384824-1384872 (-), Divergence to consensus: 10.2%
15. TE-564_Dsub: 1384899-1385545 (-), Divergence to consensus: 8.5%
16. TE-564_Dsub: 1385543-1385592 (-), Divergence to consensus: 0%
17. TE-564_Dsub: 1385590-1386077 (-), Divergence to consensus: 16.7%
18. TE-442_Dsub: 1386232-1386308 (-), Divergence to consensus: 18.2%
19. JOCKEY-3_Dsub: 1386309-1386450 (+), Divergence to consensus: 38.2%
20. TE-564_Dsub: 1386689-1386751 (-), Divergence to consensus: 6.3%
21. TE-497_Dsub: 1387673-1388424 (+), Divergence to consensus: 36.8%
22. TE-442_Dsub: 1387951-1388022 (-), Divergence to consensus: 28.7%
23. JOCKEY-4_Dsub: 1388023-1388260 (-), Divergence to consensus: 39.4%
24. TE-486_Dsub: 1388091-1388387 (+), Divergence to consensus: 34.7%
25. TE-486_Dsub: 1388178-1388445 (+), Divergence to consensus: 38.2%
26. TE-442_Dsub: 1388388-1388436 (-), Divergence to consensus: 28.7%
27. TE-622_Dsub: 1389634-1390443 (+), Divergence to consensus: 8.9%
28. TE-572_Dsub: 1391263-1391363 (-), Divergence to consensus: 21%
29. TE-622_Dsub: 1391274-1392063 (+), Divergence to consensus: 8.1%
30. TE-623_Dsub: 1391868-1392091 (-), Divergence to consensus: 29.3%
31. TE-330_Dsub: 1392096-1392167 (+), Divergence to consensus: 17%
32. TE-622_Dsub: 1392105-1392894 (-), Divergence to consensus: 12.2%
33. TE-572_Dsub: 1392851-1392903 (+), Divergence to consensus: 7.6%
34. TE-593_Dsub: 1393274-1394311 (+), Divergence to consensus: 2.5%
35. TE-622_Dsub: 1394365-1394981 (+), Divergence to consensus: 7.1%
36. TE-572_Dsub: 1394729-1395029 (-), Divergence to consensus: 25.1%
37. TE-167_Dsub: 1394961-1395057 (+), Divergence to consensus: 30.4%
38. TE-622_Dsub: 1396297-1396871 (-), Divergence to consensus: 10.9%
39. TE-442_Dsub: 1398918-1399003 (-), Divergence to consensus: 26.7%
40. TE-442_Dsub: 1399999-1400162 (-), Divergence to consensus: 26.7%
41. JOCKEY-4_Dsub: 1400370-1400401 (-), Divergence to consensus: 3.1%
42. JOCKEY-4_Dsub: 1400737-1400838 (-), Divergence to consensus: 34.2%
43. TE-486_Dsub: 1401102-1401171 (+), Divergence to consensus: 21.4%
44. JOCKEY-4_Dsub: 1403871-1403972 (-), Divergence to consensus: 34.2%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAA (-): 1395155)
FOXP1 (Sequence: TGTTTAC (-): 1378677)
FOXP1 (Sequence: TGTTTAC (-): 1380156)
FOXP1 (Sequence: TGTTTAC (-): 1393243)
FIGLA (Sequence: AACAGCTGGT (-): 1397384)
FIGLA (Sequence: TACAGGTGTA (-): 1397792)
Lhx8 (Sequence: CTAATTAA (-): 1382621)
Lhx8 (Sequence: TTAATTAA (-): 1398021)
Rhox11 (Sequence: TGGTGTTTT (+): 1381158)
Rhox11 (Sequence: TGCTGTTAT (+): 1384422)
Rhox11 (Sequence: TGCTGTTTT (+): 1387492)
Rhox11 (Sequence: CGCTGTTTA (+): 1390133)
Rhox11 (Sequence: CGCTGTTTA (+): 1391766)
Rhox11 (Sequence: TGCTGTTTT (+): 1393489)
Rhox11 (Sequence: CGCTGTTTA (+): 1396586)
Rhox11 (Sequence: TGCTGTATT (+): 1400089)
Rhox11 (Sequence: TGCTGTATT (+): 1401034)
Rhox11 (Sequence: TGCTGTATT (+): 1404168)
FOXP1 (Sequence: GTAAACA (+): 1378950)
FOXP1 (Sequence: GTAAACA (+): 1381635)
FOXP1 (Sequence: GTAAACA (+): 1392937)
FOXO1 (Sequence: GTTGTTTAC (+): 1380154)
FOXO1 (Sequence: GCTGTTTTT (+): 1387493)
FOXO1 (Sequence: GCTGTTTAT (+): 1390134)
FOXO1 (Sequence: GCTGTTTAT (+): 1391767)
FOXO1 (Sequence: GCTGTTTAT (+): 1396587)
FOXO1 (Sequence: CCTGTTTTT (+): 1397235)
POU5F1 (Sequence: ATGCAAA (+): 1392668)
POU5F1 (Sequence: ATGCAAA (+): 1393236)
POU5F1 (Sequence: ATGCAAA (+): 1397604)
FOXO3_mmu (Sequence: TGTTTTGA (-): 1379576)
FOXO3_mmu (Sequence: TGTTTACA (-): 1380156)
FOXO3_mmu (Sequence: TGTTTTGA (-): 1381161)
FOXO3_mmu (Sequence: TGTTTTGC (-): 1392409)
POU2F1 (Sequence: TATTTTAAT (+): 1379172)
POU2F1 (Sequence: TATTTAAAT (+): 1382411)
POU2F1 (Sequence: TATGTTAAT (+): 1382722)
POU2F1 (Sequence: TATTTTAAT (+): 1390601)
POU2F1 (Sequence: TATGCAAAT (+): 1397603)
POU2F1 (Sequence: TATTTTAAT (+): 1401891)
POU2F1 (Sequence: TATTTTAAT (+): 1405403)
Nobox (Sequence: TAATTACT (+): 1378324)
Nobox (Sequence: TAATTACC (+): 1393033)
Nobox (Sequence: TAATTGCT (+): 1395469)
Nobox (Sequence: TAATTGGC (+): 1397627)
RHOXF1 (Sequence: AGATTA (-): 1377730)
RHOXF1 (Sequence: GGATCA (-): 1377976)
RHOXF1 (Sequence: GGATCA (-): 1378004)
RHOXF1 (Sequence: AGATTA (-): 1378035)
RHOXF1 (Sequence: GGCTCA (-): 1379080)
RHOXF1 (Sequence: AGCTTA (-): 1379691)
RHOXF1 (Sequence: GGATCA (-): 1381382)
RHOXF1 (Sequence: AGCTTA (-): 1381966)
RHOXF1 (Sequence: GGCTCA (-): 1383901)
RHOXF1 (Sequence: GGCTCA (-): 1384616)
RHOXF1 (Sequence: GGCTCA (-): 1384722)
RHOXF1 (Sequence: GGCTCA (-): 1384882)
RHOXF1 (Sequence: AGATTA (-): 1385080)
RHOXF1 (Sequence: AGCTCA (-): 1385306)
RHOXF1 (Sequence: GGCTCA (-): 1386067)
RHOXF1 (Sequence: AGCTTA (-): 1386533)
RHOXF1 (Sequence: GGCTCA (-): 1386672)
RHOXF1 (Sequence: GGATTA (-): 1387297)
RHOXF1 (Sequence: GGATCA (-): 1387725)
RHOXF1 (Sequence: GGATCA (-): 1387929)
RHOXF1 (Sequence: GGATCA (-): 1388082)
RHOXF1 (Sequence: GGATCA (-): 1388169)
RHOXF1 (Sequence: AGCTCA (-): 1388839)
RHOXF1 (Sequence: GGCTCA (-): 1389000)
RHOXF1 (Sequence: AGCTCA (-): 1389103)
RHOXF1 (Sequence: GGATTA (-): 1389619)
RHOXF1 (Sequence: AGATCA (-): 1390026)
RHOXF1 (Sequence: GGATCA (-): 1390050)
RHOXF1 (Sequence: GGATTA (-): 1390475)
RHOXF1 (Sequence: AGATCA (-): 1391659)
RHOXF1 (Sequence: GGATCA (-): 1391683)
RHOXF1 (Sequence: GGCTCA (-): 1392618)
RHOXF1 (Sequence: AGATCA (-): 1393817)
RHOXF1 (Sequence: GGCTCA (-): 1394714)
RHOXF1 (Sequence: GGCTCA (-): 1394861)
RHOXF1 (Sequence: AGATCA (-): 1396479)
RHOXF1 (Sequence: GGATTA (-): 1396503)
RHOXF1 (Sequence: AGATTA (-): 1397916)
RHOXF1 (Sequence: AGATTA (-): 1398304)
RHOXF1 (Sequence: GGCTTA (-): 1398475)
RHOXF1 (Sequence: GGATTA (-): 1401426)
RHOXF1 (Sequence: GGATTA (-): 1401761)
RHOXF1 (Sequence: AGCTCA (-): 1404317)
RHOXF1 (Sequence: GGATTA (-): 1404935)
RHOXF1 (Sequence: GGATTA (-): 1405271)
FOXO3_mmu (Sequence: TGTAAACA (+): 1378949)
FOXO3_mmu (Sequence: TCAAAACA (+): 1380629)
FOXO3_mmu (Sequence: TGTAAACA (+): 1381634)
FOXO3_mmu (Sequence: TCTAAACA (+): 1385296)
FOXO3_mmu (Sequence: TGAAAACA (+): 1387003)
FOXO3_mmu (Sequence: GGTAAACA (+): 1392936)
FOXO3_mmu (Sequence: GCTAAACA (+): 1394089)
FOXO3_mmu (Sequence: TGAAAACA (+): 1395151)
FOXO3_mmu (Sequence: GCAAAACA (+): 1400710)
FOXO3_mmu (Sequence: GCAAAACA (+): 1403844)
Sox5 (Sequence: ATTGTT (+): 1381432)
Sox5 (Sequence: ATTGTT (+): 1382702)
Sox5 (Sequence: ATTGTT (+): 1387351)
Sox5 (Sequence: ATTGTT (+): 1388559)
Sox5 (Sequence: ATTGTT (+): 1393753)
Sox5 (Sequence: ATTGTT (+): 1393971)
Sox5 (Sequence: ATTGTT (+): 1394350)
Sox5 (Sequence: ATTGTT (+): 1395523)
Sox5 (Sequence: ATTGTT (+): 1398179)
Sox5 (Sequence: ATTGTT (+): 1398814)
Sox5 (Sequence: ATTGTT (+): 1398927)
Sox5 (Sequence: ATTGTT (+): 1400532)
Sox5 (Sequence: ATTGTT (+): 1403666)
FOXO1 (Sequence: GTAAACAAC (-): 1381635)
FOXO1 (Sequence: ATAAACAGC (-): 1394491)
FOXO1 (Sequence: AAAAACAAC (-): 1395002)
Nobox (Sequence: GCCAATTA (-): 1381770)
Nobox (Sequence: ACTAATTA (-): 1382620)
Mybl1_1 (Sequence: AACCGTTA (+): 1384807)
Mybl1_1 (Sequence: AACCGTTA (+): 1392838)
Mybl1_1 (Sequence: AACCGTTA (+): 1394946)
POU2F1 (Sequence: ATTTGAATA (-): 1377821)
POU2F1 (Sequence: ATTTGAATA (-): 1382548)
POU2F1 (Sequence: ATTTGAATA (-): 1385811)
POU2F1 (Sequence: ATTTGCATA (-): 1393396)
SOX9 (Sequence: TTATTGTT (+): 1382700)
SOX9 (Sequence: CTATTGTT (+): 1395521)
SOX9 (Sequence: TTATTGTT (+): 1398812)
POU5F1 (Sequence: TTTGCAT (-): 1377867)
POU5F1 (Sequence: TTTGCAT (-): 1385276)
POU5F1 (Sequence: TTTGCAT (-): 1389863)
POU5F1 (Sequence: TTTGCAT (-): 1393397)
POU5F1 (Sequence: TTTGCAT (-): 1393806)
POU5F1 (Sequence: TTTGCAT (-): 1393901)
POU5F1 (Sequence: TTTGCAT (-): 1397311)
POU5F1 (Sequence: TTTGCAT (-): 1397507)
Mybl1_1 (Sequence: TAACGGTT (-): 1385405)
Mybl1_1 (Sequence: TAACGGTT (-): 1385919)
Mybl1_1 (Sequence: TAACGGTT (-): 1389704)
Mybl1_1 (Sequence: TAACGGTT (-): 1391329)
A-MYB (Sequence: TGGCAGTTGG (+): 1386550)
RHOXF1 (Sequence: TAATCC (+): 1377601)
RHOXF1 (Sequence: TGAGCT (+): 1379811)
RHOXF1 (Sequence: TGATCC (+): 1380410)
RHOXF1 (Sequence: TGATCC (+): 1382026)
RHOXF1 (Sequence: TGATCC (+): 1384023)
RHOXF1 (Sequence: TAAGCT (+): 1384430)
RHOXF1 (Sequence: TGATCC (+): 1384489)
RHOXF1 (Sequence: TGATCT (+): 1384513)
RHOXF1 (Sequence: TGAGCC (+): 1384626)
RHOXF1 (Sequence: TAATCT (+): 1385088)
RHOXF1 (Sequence: TAATCC (+): 1385111)
RHOXF1 (Sequence: TAATCC (+): 1385137)
RHOXF1 (Sequence: TGATCT (+): 1386052)
RHOXF1 (Sequence: TGAGCT (+): 1386798)
RHOXF1 (Sequence: TGATCC (+): 1387054)
RHOXF1 (Sequence: TGATCT (+): 1387164)
RHOXF1 (Sequence: TGATCT (+): 1387269)
RHOXF1 (Sequence: TGAGCC (+): 1387717)
RHOXF1 (Sequence: TAATCC (+): 1389295)
RHOXF1 (Sequence: TGAGCC (+): 1389914)
RHOXF1 (Sequence: TGAGCC (+): 1391547)
RHOXF1 (Sequence: TAAGCT (+): 1392419)
RHOXF1 (Sequence: TGATCC (+): 1392482)
RHOXF1 (Sequence: TGATCT (+): 1392506)
RHOXF1 (Sequence: TAATCC (+): 1392911)
RHOXF1 (Sequence: TAATCC (+): 1393006)
RHOXF1 (Sequence: TGATCC (+): 1393530)
RHOXF1 (Sequence: TAAGCC (+): 1393914)
RHOXF1 (Sequence: TGATCT (+): 1394083)
RHOXF1 (Sequence: TGATCT (+): 1394335)
RHOXF1 (Sequence: TGATCC (+): 1394578)
RHOXF1 (Sequence: TGATCT (+): 1394602)
RHOXF1 (Sequence: TAAGCT (+): 1395059)
RHOXF1 (Sequence: TGAGCT (+): 1396100)
RHOXF1 (Sequence: TGAGCC (+): 1396367)
RHOXF1 (Sequence: TGATCC (+): 1398256)
RHOXF1 (Sequence: TGAGCC (+): 1398546)
RHOXF1 (Sequence: TGAGCC (+): 1399436)
RHOXF1 (Sequence: TGATCC (+): 1399703)
RHOXF1 (Sequence: TGATCC (+): 1399745)
Rhox11 (Sequence: AAAACACCA (-): 1380631)
Rhox11 (Sequence: TAAACACCA (-): 1385298)
Rhox11 (Sequence: TAAACAGCG (-): 1394492)
Rhox11 (Sequence: AATACAGCG (-): 1395376)
Rhox11 (Sequence: AAAACAGCA (-): 1400712)
Rhox11 (Sequence: AAAACAGCA (-): 1403846)
FOXO3_hsa (Sequence: GTAAACAT (+): 1378950)
FOXO3_hsa (Sequence: GTAAACAA (+): 1381635)
RFX4_2 (Sequence: GTAACTAAG (-): 1378064)
RFX4_2 (Sequence: GTATCTAAG (-): 1378337)
Gata4 (Sequence: AGATAAG (-): 1384522)
Gata4 (Sequence: AGATAAC (-): 1391326)
Gata4 (Sequence: AGATAAC (-): 1391608)
Gata4 (Sequence: AGATAAG (-): 1408858)
FOXO3_hsa (Sequence: ATGTTTAC (-): 1378676)
FOXO3_hsa (Sequence: TTGTTTAC (-): 1380155)
FOXO3_hsa (Sequence: ATGTTTAC (-): 1393242)
Gata4 (Sequence: GTTATCT (+): 1385206)
Gata4 (Sequence: GTTATCT (+): 1394652)
Sox5 (Sequence: AACAAT (-): 1380360)
Sox5 (Sequence: AACAAT (-): 1381751)
Sox5 (Sequence: AACAAT (-): 1382753)
Sox5 (Sequence: AACAAT (-): 1382927)
Sox5 (Sequence: AACAAT (-): 1385349)
Sox5 (Sequence: AACAAT (-): 1385449)
Sox5 (Sequence: AACAAT (-): 1390690)
Sox5 (Sequence: AACAAT (-): 1395155)
Sox5 (Sequence: AACAAT (-): 1395169)
Sox5 (Sequence: AACAAT (-): 1395421)
Sox5 (Sequence: AACAAT (-): 1395435)
Sox5 (Sequence: AACAAT (-): 1395850)
Sox5 (Sequence: AACAAT (-): 1400562)
Sox5 (Sequence: AACAAT (-): 1401976)
Sox5 (Sequence: AACAAT (-): 1403696)
Sox5 (Sequence: AACAAT (-): 1405486)