Predicted piRNA cluster no. 65     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
452227
478026
Gene Set
RepeatMasker
Mapped
Reads
499.89
plus strand
minus strand
499.89
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-584_Dsub: 452386-452467 (+), Divergence to consensus: 20.7%
2. TE-291_Dsub: 452395-452483 (-), Divergence to consensus: 32.7%
3. TE-572_Dsub: 452485-452569 (+), Divergence to consensus: 28.3%
4. TE-622_Dsub: 452494-452662 (-), Divergence to consensus: 32.3%
5. TE-622_Dsub: 452667-452952 (-), Divergence to consensus: 18.7%
6. TE-622_Dsub: 452961-453228 (-), Divergence to consensus: 16.5%
7. TE-561_Dsub: 453135-453247 (+), Divergence to consensus: 25.4%
8. TE-622_Dsub: 453249-453386 (-), Divergence to consensus: 14.7%
9. TE-622_Dsub: 453388-453772 (-), Divergence to consensus: 34.6%
10. BILBO-1_Dsub: 453775-453860 (+), Divergence to consensus: 20.7%
11. BILBO-1_Dsub: 453902-454056 (+), Divergence to consensus: 32.7%
12. TE-622_Dsub: 454046-454372 (+), Divergence to consensus: 12.2%
13. TE-612_Dsub: 454373-454414 (-), Divergence to consensus: 25.6%
14. TE-584_Dsub: 454656-454739 (+), Divergence to consensus: 17.8%
15. TE-291_Dsub: 454665-454753 (-), Divergence to consensus: 33.9%
16. TE-622_Dsub: 454764-454932 (-), Divergence to consensus: 31%
17. TE-622_Dsub: 454937-455418 (-), Divergence to consensus: 21%
18. TE-622_Dsub: 455409-455771 (-), Divergence to consensus: 25.1%
19. BILBO-1_Dsub: 455774-455873 (+), Divergence to consensus: 24%
20. BILBO-1_Dsub: 455901-456033 (+), Divergence to consensus: 46.7%
21. TE-622_Dsub: 456023-456788 (-), Divergence to consensus: 10.7%
22. BILBO-1_Dsub: 456766-456879 (+), Divergence to consensus: 16.7%
23. TE-230_Dsub: 456885-457135 (+), Divergence to consensus: 0.8%
24. TE-237_Dsub: 457136-458362 (+), Divergence to consensus: 0%
25. TE-113_Dsub: 458363-458643 (+), Divergence to consensus: 40.5%
26. TE-237_Dsub: 458791-458934 (+), Divergence to consensus: 0%
27. TE-113_Dsub: 458946-459098 (+), Divergence to consensus: 30.7%
28. TE-237_Dsub: 459268-460943 (+), Divergence to consensus: 0%
29. GYPSY-15_Dsub: 460971-462886 (+), Divergence to consensus: 38.7%
30. TE-237_Dsub: 463574-463866 (+), Divergence to consensus: 4.2%
31. TE-237_Dsub: 464436-465036 (+), Divergence to consensus: 0%
32. TE-230_Dsub: 465042-465311 (+), Divergence to consensus: 0%
33. TE-411_Dsub: 465312-466591 (+), Divergence to consensus: 0%
34. BILBO-1_Dsub: 466570-466887 (+), Divergence to consensus: 24.4%
35. GYPSY-12_Dsub: 466878-467124 (+), Divergence to consensus: 3.7%
36. TE-594_Dsub: 467011-468261 (+), Divergence to consensus: 25.2%
37. BILBO-1_Dsub: 468264-468595 (+), Divergence to consensus: 19.9%
38. BILBO-1_Dsub: 468610-469798 (+), Divergence to consensus: 23.6%
39. TE-561_Dsub: 469779-469863 (+), Divergence to consensus: 17.9%
40. TE-600_Dsub: 469792-470481 (-), Divergence to consensus: 18.3%
41. BILBO-1_Dsub: 470459-470864 (+), Divergence to consensus: 21.4%
42. GYPSY-12_Dsub: 470855-471101 (+), Divergence to consensus: 3.3%
43. TE-594_Dsub: 470988-472251 (+), Divergence to consensus: 23.5%
44. BILBO-1_Dsub: 472254-472585 (+), Divergence to consensus: 20.5%
45. BILBO-1_Dsub: 472600-473794 (+), Divergence to consensus: 24.1%
46. TE-561_Dsub: 473775-473859 (+), Divergence to consensus: 16.7%
47. TE-600_Dsub: 473788-474479 (-), Divergence to consensus: 18.3%
48. BILBO-1_Dsub: 474457-475196 (+), Divergence to consensus: 21.8%
49. BILBO-1_Dsub: 475197-476414 (+), Divergence to consensus: 23.5%
50. TE-561_Dsub: 476395-476479 (+), Divergence to consensus: 16.7%
51. TE-610_Dsub: 476406-476621 (-), Divergence to consensus: 33.1%
52. TE-640_Dsub: 476622-477049 (+), Divergence to consensus: 7%
53. BILBO-1_Dsub: 477044-477783 (+), Divergence to consensus: 22.2%
54. TE-610_Dsub: 477050-477066 (-), Divergence to consensus: 33.1%
55. BILBO-1_Dsub: 477784-479001 (+), Divergence to consensus: 23.6%

Transcription Factor Binding Sites
RFX4_2 (Sequence: CCTGGATAC (+): 457677)
RFX4_2 (Sequence: CTTGGATAC (+): 459234)
RFX4_2 (Sequence: CGTGGATAC (+): 462358)
FOXP1 (Sequence: TGTTTAC (-): 452723)
FOXP1 (Sequence: TGTTTAC (-): 454994)
FOXP1 (Sequence: TGTTTAC (-): 455696)
FOXP1 (Sequence: TGTTTAC (-): 458706)
FIGLA (Sequence: ACCAGCTGTT (-): 458700)
Rhox11 (Sequence: TGCTGTAAT (+): 466531)
Rhox11 (Sequence: CGGTGTTTT (+): 469871)
Rhox11 (Sequence: CGGTGTTTT (+): 473867)
Rhox11 (Sequence: CGGTGTTTT (+): 476487)
FOXO1 (Sequence: GCTGTTTAC (+): 458704)
POU5F1 (Sequence: ATGCAAA (+): 452886)
POU5F1 (Sequence: ATGCAAA (+): 453621)
POU5F1 (Sequence: ATGCAAA (+): 455156)
POU5F1 (Sequence: ATGCAAA (+): 455624)
POU5F1 (Sequence: ATGCAAA (+): 456537)
POU5F1 (Sequence: ATGCAAA (+): 470230)
POU5F1 (Sequence: ATGCAAA (+): 474228)
FOXO3_mmu (Sequence: TGTTTTGC (-): 452363)
FOXO3_mmu (Sequence: TGTTTTGC (-): 454633)
FOXO3_mmu (Sequence: TGTTTACA (-): 455696)
FOXO3_mmu (Sequence: TGTTTACC (-): 458706)
RHOXF1 (Sequence: AGCTTA (-): 452505)
RHOXF1 (Sequence: AGCTCA (-): 452566)
RHOXF1 (Sequence: GGATTA (-): 452955)
RHOXF1 (Sequence: AGCTTA (-): 453583)
RHOXF1 (Sequence: GGATTA (-): 453813)
RHOXF1 (Sequence: AGCTTA (-): 454775)
RHOXF1 (Sequence: GGCTTA (-): 455170)
RHOXF1 (Sequence: GGCTTA (-): 455403)
RHOXF1 (Sequence: GGATTA (-): 455812)
RHOXF1 (Sequence: GGCTCA (-): 456487)
RHOXF1 (Sequence: GGATCA (-): 457439)
RHOXF1 (Sequence: GGATCA (-): 457480)
RHOXF1 (Sequence: AGATTA (-): 457695)
RHOXF1 (Sequence: GGCTCA (-): 457830)
RHOXF1 (Sequence: GGATTA (-): 458209)
RHOXF1 (Sequence: AGCTTA (-): 458392)
RHOXF1 (Sequence: GGATTA (-): 458605)
RHOXF1 (Sequence: GGCTCA (-): 458929)
RHOXF1 (Sequence: GGATCA (-): 459387)
RHOXF1 (Sequence: GGATTA (-): 460790)
RHOXF1 (Sequence: AGATCA (-): 461104)
RHOXF1 (Sequence: AGATCA (-): 461107)
RHOXF1 (Sequence: GGATCA (-): 462164)
RHOXF1 (Sequence: AGATTA (-): 462369)
RHOXF1 (Sequence: GGCTCA (-): 462851)
RHOXF1 (Sequence: AGCTTA (-): 463113)
RHOXF1 (Sequence: AGCTCA (-): 466824)
RHOXF1 (Sequence: AGCTCA (-): 466948)
RHOXF1 (Sequence: AGCTTA (-): 468164)
RHOXF1 (Sequence: GGCTCA (-): 468294)
RHOXF1 (Sequence: AGATTA (-): 468404)
RHOXF1 (Sequence: GGATTA (-): 468687)
RHOXF1 (Sequence: GGCTCA (-): 470180)
RHOXF1 (Sequence: AGCTCA (-): 470801)
RHOXF1 (Sequence: AGCTCA (-): 470925)
RHOXF1 (Sequence: AGCTTA (-): 472154)
RHOXF1 (Sequence: GGCTCA (-): 472284)
RHOXF1 (Sequence: AGATTA (-): 472394)
RHOXF1 (Sequence: GGATTA (-): 472677)
RHOXF1 (Sequence: GGCTCA (-): 474178)
RHOXF1 (Sequence: AGCTCA (-): 474799)
RHOXF1 (Sequence: GGCTCA (-): 474895)
RHOXF1 (Sequence: AGATTA (-): 475005)
RHOXF1 (Sequence: GGATTA (-): 475316)
RHOXF1 (Sequence: GGCTCA (-): 476765)
RHOXF1 (Sequence: AGCTCA (-): 477386)
RHOXF1 (Sequence: GGCTCA (-): 477482)
RHOXF1 (Sequence: AGATTA (-): 477592)
RHOXF1 (Sequence: GGATTA (-): 477903)
FOXO3_mmu (Sequence: TCAAAACA (+): 462278)
Sox5 (Sequence: ATTGTT (+): 454453)
FOXO1 (Sequence: AAAAACAGG (-): 453994)
FOXO1 (Sequence: ATAAACAGC (-): 454293)
FOXO1 (Sequence: AAAAACAGG (-): 455971)
FOXO1 (Sequence: ATAAACAGC (-): 456264)
Mybl1_1 (Sequence: AACCGTTA (+): 456711)
Mybl1_1 (Sequence: AACCGTTA (+): 470404)
Mybl1_1 (Sequence: AACCGTTA (+): 474402)
Mybl1_1 (Sequence: AACCGTTA (+): 476989)
SOX9 (Sequence: TTATTGTT (+): 454451)
POU5F1 (Sequence: TTTGCAT (-): 473049)
POU5F1 (Sequence: TTTGCAT (-): 475688)
RHOXF1 (Sequence: TAATCT (+): 452543)
RHOXF1 (Sequence: TAAGCC (+): 453543)
RHOXF1 (Sequence: TGAGCT (+): 453763)
RHOXF1 (Sequence: TAATCC (+): 453775)
RHOXF1 (Sequence: TAATCT (+): 454813)
RHOXF1 (Sequence: TGAGCT (+): 455762)
RHOXF1 (Sequence: TAATCC (+): 455774)
RHOXF1 (Sequence: TGATCC (+): 456351)
RHOXF1 (Sequence: TGATCT (+): 456375)
RHOXF1 (Sequence: TAATCT (+): 457664)
RHOXF1 (Sequence: TGAGCC (+): 459579)
RHOXF1 (Sequence: TGATCT (+): 463094)
RHOXF1 (Sequence: TGAGCT (+): 463111)
RHOXF1 (Sequence: TAATCT (+): 463826)
RHOXF1 (Sequence: TAATCC (+): 467063)
RHOXF1 (Sequence: TAATCC (+): 468144)
RHOXF1 (Sequence: TGAGCT (+): 468162)
RHOXF1 (Sequence: TGATCT (+): 468635)
RHOXF1 (Sequence: TGATCC (+): 470047)
RHOXF1 (Sequence: TGATCT (+): 470071)
RHOXF1 (Sequence: TAATCC (+): 471040)
RHOXF1 (Sequence: TAATCC (+): 472134)
RHOXF1 (Sequence: TGAGCT (+): 472152)
RHOXF1 (Sequence: TGATCT (+): 472625)
RHOXF1 (Sequence: TGATCC (+): 474043)
RHOXF1 (Sequence: TGATCT (+): 474069)
RHOXF1 (Sequence: TGATCT (+): 475264)
RHOXF1 (Sequence: TGATCC (+): 476632)
RHOXF1 (Sequence: TGATCT (+): 476656)
RHOXF1 (Sequence: TGATCT (+): 477851)
Rhox11 (Sequence: TAAACAGCG (-): 454294)
Rhox11 (Sequence: TAAACAGCG (-): 456265)
Rhox11 (Sequence: TATACACCG (-): 458648)
Gata4 (Sequence: AGATAAG (-): 453549)
Gata4 (Sequence: AGATAAG (-): 466883)
Gata4 (Sequence: AGATAAG (-): 469747)
Gata4 (Sequence: AGATAAG (-): 473743)
Gata4 (Sequence: AGATAAG (-): 474858)
Gata4 (Sequence: AGATAAG (-): 476363)
Gata4 (Sequence: AGATAAG (-): 477445)
FOXO3_hsa (Sequence: TTGTTTAC (-): 452722)
FOXO3_hsa (Sequence: TTGTTTAC (-): 454993)
FOXO3_hsa (Sequence: TTGTTTAC (-): 455695)
Gata4 (Sequence: GTTATCT (+): 470118)
Gata4 (Sequence: GTTATCT (+): 474116)
Gata4 (Sequence: GTTATCT (+): 476703)
Sox5 (Sequence: AACAAT (-): 468732)
Sox5 (Sequence: AACAAT (-): 470204)
Sox5 (Sequence: AACAAT (-): 472722)
Sox5 (Sequence: AACAAT (-): 474202)
Sox5 (Sequence: AACAAT (-): 475361)
Sox5 (Sequence: AACAAT (-): 477948)