Predicted piRNA cluster no. 99     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
614130
637776
Gene Set
RepeatMasker
Mapped
Reads
445.35
plus strand
minus strand
445.35
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00000054) Tr:4: 635146-636450 (-)
2. unknown (unknowndsub_v4_00000054) Tr:4: 636512-636658 (-)
3. unknown (unknowndsub_v4_00000054) Tr:4: 636779-637179 (-)
4. unknown (unknowndsub_v4_00000054) Tr:4: 637301-637423 (-)
5. unknown (unknowndsub_v4_00000054) Tr:4 UTR: 637373-637423 (-)
6. unknown (unknowndsub_v4_00000054) Tr:4 UTR: 635146-635402 (-)

RepeatMasker Annotation
1. TE-617_Dsub: 614082-614207 (+), Divergence to consensus: 19%
2. TE-561_Dsub: 615244-615363 (-), Divergence to consensus: 41%
3. TE-586_Dsub: 615282-615528 (+), Divergence to consensus: 17.8%
4. TE-452_Dsub: 615337-615700 (-), Divergence to consensus: 25.7%
5. TE-291_Dsub: 615551-615615 (+), Divergence to consensus: 38.6%
6. TE-432_Dsub: 615616-615691 (+), Divergence to consensus: 18.4%
7. TE-291_Dsub: 615692-615712 (+), Divergence to consensus: 38.6%
8. TE-581_Dsub: 615928-615953 (-), Divergence to consensus: 23.9%
9. HELITRON-3_Dsub: 615954-616031 (-), Divergence to consensus: 29.5%
10. TE-581_Dsub: 616032-616089 (-), Divergence to consensus: 23.9%
11. TE-560_Dsub: 616090-616911 (+), Divergence to consensus: 16.4%
12. TE-492_Dsub: 616910-617026 (+), Divergence to consensus: 4.3%
13. TE-581_Dsub: 616912-616957 (-), Divergence to consensus: 23.9%
14. TRANSIB-1_Dsub: 617032-617601 (-), Divergence to consensus: 4.7%
15. BILBO-1_Dsub: 618532-618865 (+), Divergence to consensus: 2.7%
16. TE-593_Dsub: 618870-619268 (-), Divergence to consensus: 9.8%
17. TE-528_Dsub: 619347-619377 (+), Divergence to consensus: 38.1%
18. TE-568_Dsub: 619378-619395 (-), Divergence to consensus: 27%
19. TE-516_Dsub: 619396-619449 (+), Divergence to consensus: 16.7%
20. TE-586_Dsub: 619399-619473 (-), Divergence to consensus: 24%
21. TE-528_Dsub: 619474-619602 (+), Divergence to consensus: 38.1%
22. TE-581_Dsub: 622441-623008 (-), Divergence to consensus: 9.6%
23. TE-356_Dsub: 623427-623444 (-), Divergence to consensus: 25.1%
24. TE-622_Dsub: 623445-623516 (+), Divergence to consensus: 29.2%
25. TE-356_Dsub: 623517-623542 (-), Divergence to consensus: 25.1%
26. TE-580_Dsub: 623524-623573 (+), Divergence to consensus: 6.1%
27. TE-580_Dsub: 623574-623648 (-), Divergence to consensus: 2.7%
28. TE-622_Dsub: 623646-623949 (+), Divergence to consensus: 5.3%
29. TE-633_Dsub: 623950-624331 (-), Divergence to consensus: 3.2%
30. TE-183_Dsub: 624185-624349 (+), Divergence to consensus: 28.2%
31. TE-580_Dsub: 624329-624472 (-), Divergence to consensus: 4.2%
32. GYPSY-1_Dsub: 624544-624785 (+), Divergence to consensus: 4.9%
33. GYPSY-1_Dsub: 624769-625084 (+), Divergence to consensus: 10.3%
34. GYPSY-1_Dsub: 625073-626344 (+), Divergence to consensus: 3.5%
35. TE-603_Dsub: 626289-626438 (+), Divergence to consensus: 18.6%
36. TE-622_Dsub: 626308-627193 (-), Divergence to consensus: 23%
37. TE-185_Dsub: 627139-627211 (+), Divergence to consensus: 14.3%
38. GYPSY-1_Dsub: 627185-630505 (+), Divergence to consensus: 5.6%
39. TE-580_Dsub: 630496-631425 (-), Divergence to consensus: 11.9%
40. JOCKEY-5_Dsub: 631431-632296 (+), Divergence to consensus: 6.3%
41. TE-627_Dsub: 632297-632562 (+), Divergence to consensus: 18.6%
42. JOCKEY-2_Dsub: 632341-632630 (+), Divergence to consensus: 6.6%
43. TE-620_Dsub: 632607-632713 (+), Divergence to consensus: 9.4%
44. TE-580_Dsub: 632732-633187 (-), Divergence to consensus: 12.9%
45. TE-622_Dsub: 633249-633651 (-), Divergence to consensus: 35.8%
46. TE-633_Dsub: 633374-633851 (+), Divergence to consensus: 17.5%
47. TE-236_Dsub: 633713-633870 (-), Divergence to consensus: 20.6%
48. TE-622_Dsub: 633842-633975 (+), Divergence to consensus: 29.1%
49. TE-623_Dsub: 633993-634443 (-), Divergence to consensus: 42.1%
50. TE-565_Dsub: 634050-634748 (+), Divergence to consensus: 21.3%
51. TE-640_Dsub: 634539-635047 (+), Divergence to consensus: 12.9%
52. TE-586_Dsub: 634951-635098 (-), Divergence to consensus: 28.2%
53. TE-613_Dsub: 635060-635103 (+), Divergence to consensus: 19.6%
54. TE-501_Dsub: 637548-637660 (+), Divergence to consensus: 2.7%
55. TE-456_Dsub: 637712-637784 (-), Divergence to consensus: 9.5%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGG (-): 622141)
FOXP1 (Sequence: TGTTTAC (-): 616592)
FOXP1 (Sequence: TGTTTAC (-): 619627)
FOXP1 (Sequence: TGTTTAC (-): 621612)
FOXP1 (Sequence: TGTTTAC (-): 625014)
FOXP1 (Sequence: TGTTTAC (-): 634486)
FIGLA (Sequence: TCCAGCTGTA (-): 632061)
FIGLA (Sequence: ACCAGCTGTT (-): 637509)
Lhx8 (Sequence: TTAATTAA (-): 623423)
Lhx8 (Sequence: CTAATTAA (-): 626766)
Rhox11 (Sequence: TGCTGTATT (+): 620149)
Rhox11 (Sequence: CGGTGTTTT (+): 627856)
Rhox11 (Sequence: TGCTGTTTA (+): 629297)
FOXO1 (Sequence: GTTGTTTAC (+): 616590)
FOXO1 (Sequence: GTTGTTTTT (+): 618483)
FOXO1 (Sequence: GTTGTTTAC (+): 634484)
FOXO1 (Sequence: GTTGTTTTT (+): 635811)
FOXO1 (Sequence: GTTGTTTTT (+): 636826)
FOXO1 (Sequence: GCTGTTTTT (+): 637513)
POU5F1 (Sequence: ATGCAAA (+): 626718)
POU5F1 (Sequence: ATGCAAA (+): 626967)
POU5F1 (Sequence: ATGCAAA (+): 634817)
FOXO3_mmu (Sequence: TGTTTACA (-): 616592)
FOXO3_mmu (Sequence: TGTTTACC (-): 621612)
FOXO3_mmu (Sequence: TGTTTACA (-): 625014)
FOXO3_mmu (Sequence: TGTTTTGA (-): 627859)
FOXO3_mmu (Sequence: TGTTTTCA (-): 633222)
FOXO3_mmu (Sequence: TGTTTACA (-): 634486)
FOXO3_mmu (Sequence: TGTTTTCC (-): 636816)
FOXO3_mmu (Sequence: TGTTTAGC (-): 637005)
POU2F1 (Sequence: TATGTTAAT (+): 621492)
RHOXF1 (Sequence: AGATCA (-): 616493)
RHOXF1 (Sequence: GGATCA (-): 616516)
RHOXF1 (Sequence: AGCTTA (-): 616579)
RHOXF1 (Sequence: GGCTTA (-): 618648)
RHOXF1 (Sequence: AGCTCA (-): 618797)
RHOXF1 (Sequence: GGATCA (-): 618997)
RHOXF1 (Sequence: AGATCA (-): 621224)
RHOXF1 (Sequence: AGCTCA (-): 621814)
RHOXF1 (Sequence: AGATCA (-): 622211)
RHOXF1 (Sequence: AGATCA (-): 622852)
RHOXF1 (Sequence: AGCTTA (-): 622934)
RHOXF1 (Sequence: AGATTA (-): 623451)
RHOXF1 (Sequence: GGCTCA (-): 624044)
RHOXF1 (Sequence: GGCTCA (-): 624187)
RHOXF1 (Sequence: GGATCA (-): 624461)
RHOXF1 (Sequence: GGATCA (-): 625189)
RHOXF1 (Sequence: AGCTCA (-): 625686)
RHOXF1 (Sequence: AGATCA (-): 625797)
RHOXF1 (Sequence: AGATCA (-): 625806)
RHOXF1 (Sequence: AGATTA (-): 625933)
RHOXF1 (Sequence: GGCTCA (-): 626917)
RHOXF1 (Sequence: GGCTCA (-): 627048)
RHOXF1 (Sequence: AGATTA (-): 627509)
RHOXF1 (Sequence: AGCTTA (-): 627527)
RHOXF1 (Sequence: GGATTA (-): 627874)
RHOXF1 (Sequence: AGATCA (-): 628273)
RHOXF1 (Sequence: AGCTCA (-): 629847)
RHOXF1 (Sequence: AGATCA (-): 629943)
RHOXF1 (Sequence: AGCTTA (-): 630305)
RHOXF1 (Sequence: GGATCA (-): 630845)
RHOXF1 (Sequence: AGCTCA (-): 631818)
RHOXF1 (Sequence: GGCTCA (-): 632151)
RHOXF1 (Sequence: GGATCA (-): 632329)
RHOXF1 (Sequence: AGATCA (-): 632546)
RHOXF1 (Sequence: GGATCA (-): 633176)
RHOXF1 (Sequence: AGCTTA (-): 633856)
RHOXF1 (Sequence: AGATCA (-): 634386)
RHOXF1 (Sequence: GGATCA (-): 634410)
RHOXF1 (Sequence: AGCTTA (-): 634473)
RHOXF1 (Sequence: GGCTTA (-): 634587)
RHOXF1 (Sequence: GGCTCA (-): 634918)
RHOXF1 (Sequence: AGATCA (-): 635437)
RHOXF1 (Sequence: GGCTCA (-): 635957)
RHOXF1 (Sequence: AGCTCA (-): 637010)
FOXO3_mmu (Sequence: TCAAAACA (+): 623386)
Sox5 (Sequence: ATTGTT (+): 615067)
Sox5 (Sequence: ATTGTT (+): 617001)
Sox5 (Sequence: ATTGTT (+): 617069)
Sox5 (Sequence: ATTGTT (+): 617207)
Sox5 (Sequence: ATTGTT (+): 617795)
Sox5 (Sequence: ATTGTT (+): 618286)
Sox5 (Sequence: ATTGTT (+): 619625)
Sox5 (Sequence: ATTGTT (+): 620045)
Sox5 (Sequence: ATTGTT (+): 637630)
FOXO1 (Sequence: AAAAACAAG (-): 620231)
FOXO1 (Sequence: ATAAACAGC (-): 623896)
FOXO1 (Sequence: AAAAACAAC (-): 630236)
FOXO1 (Sequence: AAAAACAAC (-): 631348)
Nobox (Sequence: ACCAATTA (-): 618195)
Nobox (Sequence: GCTAATTA (-): 626765)
Mybl1_1 (Sequence: AACCGTTA (+): 624272)
Mybl1_1 (Sequence: AACCGTTA (+): 635002)
POU2F1 (Sequence: ATTTAAATA (-): 617299)
POU2F1 (Sequence: ATTTACATA (-): 619419)
POU2F1 (Sequence: ATTAAAATA (-): 630720)
POU2F1 (Sequence: ATTTAAATA (-): 634005)
SOX9 (Sequence: TCATTGTT (+): 615065)
SOX9 (Sequence: TTATTGTT (+): 617793)
POU5F1 (Sequence: TTTGCAT (-): 616549)
POU5F1 (Sequence: TTTGCAT (-): 619594)
POU5F1 (Sequence: TTTGCAT (-): 620413)
POU5F1 (Sequence: TTTGCAT (-): 622689)
POU5F1 (Sequence: TTTGCAT (-): 633844)
Mybl1_1 (Sequence: TAACGGTT (-): 622506)
Mybl1_1 (Sequence: TAACGGTT (-): 633429)
Mybl1_1 (Sequence: TAACGGTT (-): 634106)
RFX4_1 (Sequence: CTTGGCAAC (+): 616046)
RHOXF1 (Sequence: TGATCC (+): 614241)
RHOXF1 (Sequence: TAAGCT (+): 615377)
RHOXF1 (Sequence: TGATCC (+): 615440)
RHOXF1 (Sequence: TGATCT (+): 615450)
RHOXF1 (Sequence: TGATCT (+): 615464)
RHOXF1 (Sequence: TGAGCC (+): 616225)
RHOXF1 (Sequence: TAATCT (+): 617144)
RHOXF1 (Sequence: TAAGCT (+): 617167)
RHOXF1 (Sequence: TGAGCT (+): 618003)
RHOXF1 (Sequence: TAATCT (+): 618255)
RHOXF1 (Sequence: TGAGCT (+): 618720)
RHOXF1 (Sequence: TAAGCT (+): 619658)
RHOXF1 (Sequence: TAATCC (+): 620534)
RHOXF1 (Sequence: TAATCC (+): 621264)
RHOXF1 (Sequence: TAATCC (+): 621497)
RHOXF1 (Sequence: TAAGCT (+): 621812)
RHOXF1 (Sequence: TAAGCC (+): 622740)
RHOXF1 (Sequence: TGAGCC (+): 624611)
RHOXF1 (Sequence: TGAGCC (+): 624642)
RHOXF1 (Sequence: TGAGCT (+): 624932)
RHOXF1 (Sequence: TGAGCT (+): 625436)
RHOXF1 (Sequence: TAATCC (+): 626166)
RHOXF1 (Sequence: TAAGCT (+): 626614)
RHOXF1 (Sequence: TAAGCT (+): 626734)
RHOXF1 (Sequence: TGATCT (+): 626821)
RHOXF1 (Sequence: TAAGCC (+): 627230)
RHOXF1 (Sequence: TAAGCC (+): 627304)
RHOXF1 (Sequence: TAAGCC (+): 627403)
RHOXF1 (Sequence: TGAGCC (+): 627482)
RHOXF1 (Sequence: TAAGCT (+): 627531)
RHOXF1 (Sequence: TAAGCC (+): 628065)
RHOXF1 (Sequence: TGATCC (+): 629384)
RHOXF1 (Sequence: TAATCC (+): 629726)
RHOXF1 (Sequence: TAATCT (+): 631402)
RHOXF1 (Sequence: TGATCC (+): 631558)
RHOXF1 (Sequence: TGAGCT (+): 633326)
RHOXF1 (Sequence: TGATCC (+): 633516)
RHOXF1 (Sequence: TGAGCC (+): 634277)
RHOXF1 (Sequence: TGATCC (+): 634631)
RHOXF1 (Sequence: TGATCC (+): 634641)
RHOXF1 (Sequence: TGATCT (+): 634655)
RHOXF1 (Sequence: TGATCT (+): 635540)
RHOXF1 (Sequence: TGATCC (+): 635620)
RHOXF1 (Sequence: TGATCT (+): 635665)
RHOXF1 (Sequence: TGATCC (+): 635842)
RHOXF1 (Sequence: TAATCT (+): 635999)
RHOXF1 (Sequence: TGAGCC (+): 636412)
RHOXF1 (Sequence: TAAGCC (+): 636558)
RHOXF1 (Sequence: TGAGCT (+): 636603)
RHOXF1 (Sequence: TGATCT (+): 636876)
RHOXF1 (Sequence: TGATCT (+): 636912)
Rhox11 (Sequence: TTAACACCA (-): 617104)
Rhox11 (Sequence: TTAACACCA (-): 617133)
Rhox11 (Sequence: ATAACACCA (-): 617884)
Rhox11 (Sequence: AAAACAGCA (-): 619034)
Rhox11 (Sequence: ATTACAGCA (-): 621033)
Rhox11 (Sequence: TTAACAGCA (-): 621055)
Rhox11 (Sequence: TAAACAGCG (-): 623897)
Gata4 (Sequence: AGATAAC (-): 616442)
Gata4 (Sequence: AGATAAC (-): 616449)
Gata4 (Sequence: AGATAAC (-): 632619)
Gata4 (Sequence: AGATAAC (-): 633685)
FOXO3_hsa (Sequence: TTGTTTAC (-): 616591)
FOXO3_hsa (Sequence: TTGTTTAC (-): 619626)
FOXO3_hsa (Sequence: ATGTTTAC (-): 621611)
FOXO3_hsa (Sequence: TTGTTTAC (-): 634485)
Gata4 (Sequence: GTTATCT (+): 623982)
Sox5 (Sequence: AACAAT (-): 617291)
Sox5 (Sequence: AACAAT (-): 618741)
Sox5 (Sequence: AACAAT (-): 622141)
Sox5 (Sequence: AACAAT (-): 624897)
Sox5 (Sequence: AACAAT (-): 626269)
Sox5 (Sequence: AACAAT (-): 627549)
Sox5 (Sequence: AACAAT (-): 627668)
Sox5 (Sequence: AACAAT (-): 634791)
Sox5 (Sequence: AACAAT (-): 635373)
Sox5 (Sequence: AACAAT (-): 637746)