Predicted piRNA cluster no. 59     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
221229
229027
Gene Set
RepeatMasker
Mapped
Reads
16.43
plus strand
minus strand
16.43
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00005674) Tr:4: 221491-221581 (+)
2. unknown (unknowndsub_v4_00005674) Tr:4: 221596-221774 (+)

RepeatMasker Annotation
1. TE-640_Dsub: 220966-221328 (+), Divergence to consensus: 31.5%
2. TE-566_Dsub: 221329-221388 (+), Divergence to consensus: 37.4%
3. TE-572_Dsub: 221331-221414 (-), Divergence to consensus: 36.9%
4. TE-560_Dsub: 222059-222498 (+), Divergence to consensus: 35.9%
5. TE-138_Dsub: 222410-222514 (-), Divergence to consensus: 29.2%
6. TE-581_Dsub: 222510-222627 (-), Divergence to consensus: 15.2%
7. TE-565_Dsub: 222628-222815 (+), Divergence to consensus: 24.5%
8. TE-607_Dsub: 222811-222822 (-), Divergence to consensus: 18%
9. TE-613_Dsub: 222823-222866 (+), Divergence to consensus: 4.5%
10. GYPSY-18_Dsub: 222867-223332 (-), Divergence to consensus: 23.3%
11. TE-588_Dsub: 223330-223396 (+), Divergence to consensus: 11.5%
12. HELITRON-1_Dsub: 223488-223882 (+), Divergence to consensus: 4.6%
13. HELITRON-2_Dsub: 223880-224419 (+), Divergence to consensus: 17.5%
14. TE-588_Dsub: 224420-224844 (+), Divergence to consensus: 20.3%
15. TE-395_Dsub: 224791-224859 (-), Divergence to consensus: 25.5%
16. GYPSY-18_Dsub: 224837-226320 (-), Divergence to consensus: 23.8%
17. TE-622_Dsub: 226321-226429 (+), Divergence to consensus: 28.3%
18. TE-577_Dsub: 226321-227059 (-), Divergence to consensus: 22%
19. TE-185_Dsub: 227002-227068 (+), Divergence to consensus: 18.5%
20. TE-291_Dsub: 227029-227073 (-), Divergence to consensus: 8.9%
21. TE-584_Dsub: 227062-227099 (+), Divergence to consensus: 7.9%
22. TE-633_Dsub: 227069-227277 (-), Divergence to consensus: 12.9%
23. TE-604_Dsub: 227269-227292 (-), Divergence to consensus: 34.5%
24. TE-640_Dsub: 227293-227431 (+), Divergence to consensus: 25.2%
25. TE-633_Dsub: 227434-227543 (-), Divergence to consensus: 20.5%
26. TE-603_Dsub: 227544-227556 (+), Divergence to consensus: 50.2%
27. MARINER-1_Dsub: 228448-228844 (-), Divergence to consensus: 30.2%
28. TE-436_Dsub: 228937-228988 (-), Divergence to consensus: 12%
29. TE-633_Dsub: 228949-229169 (+), Divergence to consensus: 4.1%

Transcription Factor Binding Sites
Lhx8 (Sequence: TTAATTAA (-): 224568)
Rhox11 (Sequence: TGGTGTTTT (+): 225045)
FOXO1 (Sequence: GTTGTTTTT (+): 224716)
POU5F1 (Sequence: ATGCAAA (+): 221240)
POU5F1 (Sequence: ATGCAAA (+): 226826)
Nobox (Sequence: TAATTGCC (+): 221431)
Nobox (Sequence: TAATTAGT (+): 223515)
RHOXF1 (Sequence: AGATTA (-): 222341)
RHOXF1 (Sequence: AGATCA (-): 222351)
RHOXF1 (Sequence: GGATCA (-): 222366)
RHOXF1 (Sequence: AGCTTA (-): 222634)
RHOXF1 (Sequence: AGATCA (-): 223049)
RHOXF1 (Sequence: GGATTA (-): 224195)
RHOXF1 (Sequence: GGATCA (-): 224209)
RHOXF1 (Sequence: AGATTA (-): 224479)
RHOXF1 (Sequence: GGCTTA (-): 224686)
RHOXF1 (Sequence: AGCTCA (-): 225083)
RHOXF1 (Sequence: GGATCA (-): 225638)
RHOXF1 (Sequence: AGCTCA (-): 225774)
RHOXF1 (Sequence: AGATCA (-): 225821)
RHOXF1 (Sequence: GGATTA (-): 225875)
RHOXF1 (Sequence: AGCTTA (-): 226206)
Sox5 (Sequence: ATTGTT (+): 224503)
Sox5 (Sequence: ATTGTT (+): 228107)
Mybl1_1 (Sequence: AACCGTTA (+): 227007)
POU2F1 (Sequence: ATTTGCATA (-): 227800)
SOX9 (Sequence: CTATTGTT (+): 228105)
POU5F1 (Sequence: TTTGCAT (-): 227801)
Mybl1_1 (Sequence: TAACGGTT (-): 229001)
RHOXF1 (Sequence: TAATCT (+): 221479)
RHOXF1 (Sequence: TAAGCT (+): 222950)
RHOXF1 (Sequence: TGATCT (+): 223247)
RHOXF1 (Sequence: TAAGCT (+): 223705)
RHOXF1 (Sequence: TAAGCC (+): 224100)
RHOXF1 (Sequence: TGAGCT (+): 224385)
RHOXF1 (Sequence: TGAGCT (+): 225081)
RHOXF1 (Sequence: TGATCT (+): 226051)
RHOXF1 (Sequence: TAAGCT (+): 226579)
RHOXF1 (Sequence: TGATCC (+): 226642)
RHOXF1 (Sequence: TGATCT (+): 226666)
RHOXF1 (Sequence: TGATCC (+): 227132)
RHOXF1 (Sequence: TAATCT (+): 228804)
Gata4 (Sequence: AGATAAG (-): 226131)
Gata4 (Sequence: AGATAAG (-): 227296)
Gata4 (Sequence: GTTATCT (+): 226227)
Sox5 (Sequence: AACAAT (-): 222241)
Sox5 (Sequence: AACAAT (-): 223217)
Sox5 (Sequence: AACAAT (-): 223827)
Sox5 (Sequence: AACAAT (-): 225133)