Predicted piRNA cluster no. 123     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
27064087
27098026
Gene Set
RepeatMasker
Mapped
Reads
562.63
plus strand
minus strand
562.63
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00002844) Tr:4: 27077733-27077748 (+)
2. unknown (unknowndsub_v4_00002844) Tr:4: 27077809-27077926 (+)
3. unknown (unknowndsub_v4_00002844) Tr:4: 27087577-27087807 (+)
4. unknown (unknowndsub_v4_00002844) Tr:4: 27087871-27089859 (+)
5. unknown (unknowndsub_v4_00002844) Tr:4: 27089922-27090475 (+)
6. unknown (unknowndsub_v4_00002844) Tr:4: 27090540-27090834 (+)
7. unknown (unknowndsub_v4_00002844) Tr:4: 27077733-27077748 (+)
8. unknown (unknowndsub_v4_00002844) Tr:4: 27077809-27077926 (+)
9. unknown (unknowndsub_v4_00002844) Tr:4: 27087577-27087807 (+)
10. unknown (unknowndsub_v4_00002844) Tr:4: 27087871-27089859 (+)
11. unknown (unknowndsub_v4_00002844) Tr:4: 27089922-27090475 (+)
12. unknown (unknowndsub_v4_00002844) Tr:4: 27090540-27090834 (+)
13. unknown (unknowndsub_v4_00002844) Tr:4: 27077733-27077748 (+)
14. unknown (unknowndsub_v4_00002844) Tr:4: 27077809-27077926 (+)
15. unknown (unknowndsub_v4_00002844) Tr:4: 27087577-27087807 (+)
16. unknown (unknowndsub_v4_00002844) Tr:4: 27087871-27089859 (+)
17. unknown (unknowndsub_v4_00002844) Tr:4: 27089922-27090475 (+)
18. unknown (unknowndsub_v4_00002844) Tr:4: 27090540-27090834 (+)
19. unknown (unknowndsub_v4_00002844) Tr:4: 27077733-27077748 (+)
20. unknown (unknowndsub_v4_00002844) Tr:4: 27077809-27077926 (+)
21. unknown (unknowndsub_v4_00002844) Tr:4: 27087577-27087807 (+)
22. unknown (unknowndsub_v4_00002844) Tr:4: 27087871-27089859 (+)
23. unknown (unknowndsub_v4_00002844) Tr:4: 27089922-27090475 (+)
24. unknown (unknowndsub_v4_00002844) Tr:4: 27090540-27090834 (+)
25. unknown (unknowndsub_v4_00002845) Tr:4: 27079272-27080005 (-)
26. unknown (unknowndsub_v4_00002845) Tr:4: 27078123-27079212 (-)

RepeatMasker Annotation
1. TE-22_Dsub: 27064817-27064888 (+), Divergence to consensus: 30.4%
2. HELITRON-3_Dsub: 27064842-27064918 (+), Divergence to consensus: 26.1%
3. TE-621_Dsub: 27065383-27068696 (+), Divergence to consensus: 1.6%
4. GYPSY-20_Dsub: 27068677-27068757 (+), Divergence to consensus: 6.1%
5. GYPSY-20_Dsub: 27068758-27069012 (+), Divergence to consensus: 4.7%
6. GYPSY-20_Dsub: 27069018-27069451 (-), Divergence to consensus: 0.7%
7. TE-621_Dsub: 27069452-27076236 (-), Divergence to consensus: 3.5%
8. TE-576_Dsub: 27076214-27076236 (-), Divergence to consensus: 3%
9. GYPSY-20_Dsub: 27076237-27076279 (-), Divergence to consensus: 4.8%
10. TE-611_Dsub: 27076337-27077306 (-), Divergence to consensus: 5.1%
11. TE-442_Dsub: 27077307-27081204 (-), Divergence to consensus: 3.3%
12. TE-415_Dsub: 27081205-27081965 (-), Divergence to consensus: 4.6%
13. TE-443_Dsub: 27081956-27082040 (+), Divergence to consensus: 21%
14. TE-415_Dsub: 27082041-27082128 (-), Divergence to consensus: 2.2%
15. GYPSY-15_Dsub: 27082129-27082934 (-), Divergence to consensus: 39.8%
16. TE-415_Dsub: 27083093-27083327 (-), Divergence to consensus: 12.4%
17. GYPSY-15_Dsub: 27083344-27085418 (-), Divergence to consensus: 4.7%
18. GYPSY-14_Dsub: 27085419-27086428 (-), Divergence to consensus: 2.2%
19. TE-442_Dsub: 27086429-27086579 (-), Divergence to consensus: 1.4%
20. TE-611_Dsub: 27086580-27087503 (-), Divergence to consensus: 1.1%
21. GYPSY-18_Dsub: 27090973-27091116 (-), Divergence to consensus: 0.7%
22. GYPSY-18_Dsub: 27093713-27093865 (+), Divergence to consensus: 3.3%
23. GYPSY-18_Dsub: 27093857-27098998 (+), Divergence to consensus: 0.1%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 27065246)
SOX9 (Sequence: AACAATAA (-): 27067567)
SOX9 (Sequence: AACAATAA (-): 27068152)
SOX9 (Sequence: AACAATGA (-): 27091758)
SOX9 (Sequence: AACAATAG (-): 27093974)
RFX4_2 (Sequence: CGTGGTTAC (+): 27067990)
RFX4_2 (Sequence: CGTAGTTAC (+): 27096828)
FOXP1 (Sequence: TGTTTAC (-): 27071182)
FOXP1 (Sequence: TGTTTAC (-): 27073097)
FOXP1 (Sequence: TGTTTAC (-): 27078017)
Lhx8 (Sequence: TTAATTAA (-): 27069571)
Lhx8 (Sequence: TTAATTAA (-): 27072754)
Lhx8 (Sequence: TTAATTAG (-): 27096880)
Rhox11 (Sequence: TGCTGTTAT (+): 27073579)
Rhox11 (Sequence: CGCTGTTAT (+): 27074129)
Rhox11 (Sequence: TGGTGTTAA (+): 27080521)
Rhox11 (Sequence: TGGTGTTAA (+): 27080739)
Rhox11 (Sequence: TGGTGTTAT (+): 27087539)
Rhox11 (Sequence: TGCTGTTAA (+): 27091891)
FOXP1 (Sequence: GTAAACA (+): 27068487)
FOXP1 (Sequence: GTAAACA (+): 27070753)
FOXP1 (Sequence: GTAAACA (+): 27095228)
POU5F1 (Sequence: ATGCAAA (+): 27066063)
POU5F1 (Sequence: ATGCAAA (+): 27094982)
FOXO3_mmu (Sequence: TGTTTAGC (-): 27064542)
FOXO3_mmu (Sequence: TGTTTTCA (-): 27065008)
FOXO3_mmu (Sequence: TGTTTTCC (-): 27071420)
FOXO3_mmu (Sequence: TGTTTTCC (-): 27073294)
FOXO3_mmu (Sequence: TGTTTACC (-): 27078017)
FOXO3_mmu (Sequence: TGTTTTGA (-): 27080988)
FOXO3_mmu (Sequence: TGTTTTGA (-): 27093635)
FOXO3_mmu (Sequence: TGTTTTGC (-): 27094570)
POU2F1 (Sequence: TATTTAAAT (+): 27080440)
POU2F1 (Sequence: TATGTTAAT (+): 27093572)
Nobox (Sequence: TAATTGCC (+): 27071451)
Nobox (Sequence: TAATTGGT (+): 27072759)
Nobox (Sequence: TAATTACC (+): 27073512)
Nobox (Sequence: TAATTACC (+): 27087518)
Nobox (Sequence: TAATTGGC (+): 27093856)
Nobox (Sequence: TAATTAGC (+): 27096881)
RHOXF1 (Sequence: GGCTCA (-): 27065150)
RHOXF1 (Sequence: AGATCA (-): 27067297)
RHOXF1 (Sequence: AGATTA (-): 27067527)
RHOXF1 (Sequence: GGATCA (-): 27067535)
RHOXF1 (Sequence: AGCTTA (-): 27067938)
RHOXF1 (Sequence: AGATCA (-): 27068673)
RHOXF1 (Sequence: GGATCA (-): 27069247)
RHOXF1 (Sequence: AGATTA (-): 27070478)
RHOXF1 (Sequence: AGCTTA (-): 27071588)
RHOXF1 (Sequence: AGATCA (-): 27073024)
RHOXF1 (Sequence: AGCTTA (-): 27075106)
RHOXF1 (Sequence: GGCTTA (-): 27075313)
RHOXF1 (Sequence: GGCTCA (-): 27075909)
RHOXF1 (Sequence: GGATTA (-): 27076106)
RHOXF1 (Sequence: AGCTTA (-): 27076555)
RHOXF1 (Sequence: AGCTCA (-): 27079315)
RHOXF1 (Sequence: GGCTTA (-): 27080862)
RHOXF1 (Sequence: AGATCA (-): 27082127)
RHOXF1 (Sequence: AGCTCA (-): 27084517)
RHOXF1 (Sequence: GGATCA (-): 27084591)
RHOXF1 (Sequence: GGCTCA (-): 27085754)
RHOXF1 (Sequence: GGATCA (-): 27085931)
RHOXF1 (Sequence: GGCTCA (-): 27086086)
RHOXF1 (Sequence: GGCTCA (-): 27086622)
RHOXF1 (Sequence: AGCTTA (-): 27086751)
RHOXF1 (Sequence: GGATTA (-): 27087831)
RHOXF1 (Sequence: AGATCA (-): 27088380)
RHOXF1 (Sequence: GGATTA (-): 27088870)
RHOXF1 (Sequence: AGATCA (-): 27088987)
RHOXF1 (Sequence: GGCTTA (-): 27090582)
RHOXF1 (Sequence: GGCTCA (-): 27090607)
RHOXF1 (Sequence: GGATCA (-): 27091259)
RHOXF1 (Sequence: GGCTCA (-): 27091268)
RHOXF1 (Sequence: AGCTTA (-): 27091629)
RHOXF1 (Sequence: GGATTA (-): 27091679)
RHOXF1 (Sequence: GGCTTA (-): 27091934)
RHOXF1 (Sequence: AGATTA (-): 27091982)
RHOXF1 (Sequence: AGCTCA (-): 27092788)
RHOXF1 (Sequence: GGCTCA (-): 27093035)
RHOXF1 (Sequence: AGCTTA (-): 27093197)
RHOXF1 (Sequence: GGCTTA (-): 27093471)
RHOXF1 (Sequence: AGCTTA (-): 27093604)
RHOXF1 (Sequence: AGCTTA (-): 27093766)
RHOXF1 (Sequence: GGATTA (-): 27094043)
RHOXF1 (Sequence: AGATCA (-): 27094174)
RHOXF1 (Sequence: AGCTTA (-): 27094393)
RHOXF1 (Sequence: AGATCA (-): 27094687)
RHOXF1 (Sequence: AGCTCA (-): 27096524)
RHOXF1 (Sequence: AGCTTA (-): 27097120)
RHOXF1 (Sequence: AGATCA (-): 27097255)
RHOXF1 (Sequence: AGCTTA (-): 27097444)
FOXO3_mmu (Sequence: GGAAAACA (+): 27068289)
FOXO3_mmu (Sequence: TGTAAACA (+): 27070752)
FOXO3_mmu (Sequence: TCAAAACA (+): 27091187)
FOXO3_mmu (Sequence: GGTAAACA (+): 27095227)
Sox5 (Sequence: ATTGTT (+): 27064804)
Sox5 (Sequence: ATTGTT (+): 27065222)
Sox5 (Sequence: ATTGTT (+): 27066447)
Sox5 (Sequence: ATTGTT (+): 27069799)
Sox5 (Sequence: ATTGTT (+): 27070073)
Sox5 (Sequence: ATTGTT (+): 27070252)
Sox5 (Sequence: ATTGTT (+): 27071215)
Sox5 (Sequence: ATTGTT (+): 27072936)
Sox5 (Sequence: ATTGTT (+): 27072984)
Sox5 (Sequence: ATTGTT (+): 27073311)
Sox5 (Sequence: ATTGTT (+): 27073433)
Sox5 (Sequence: ATTGTT (+): 27073547)
Sox5 (Sequence: ATTGTT (+): 27074019)
Sox5 (Sequence: ATTGTT (+): 27076413)
Sox5 (Sequence: ATTGTT (+): 27076464)
Sox5 (Sequence: ATTGTT (+): 27076560)
Sox5 (Sequence: ATTGTT (+): 27077176)
Sox5 (Sequence: ATTGTT (+): 27082628)
Sox5 (Sequence: ATTGTT (+): 27086659)
Sox5 (Sequence: ATTGTT (+): 27086756)
Sox5 (Sequence: ATTGTT (+): 27087373)
Sox5 (Sequence: ATTGTT (+): 27093066)
Sox5 (Sequence: ATTGTT (+): 27093551)
Sox5 (Sequence: ATTGTT (+): 27093587)
Sox5 (Sequence: ATTGTT (+): 27094499)
FOXO1 (Sequence: ATAAACAAC (-): 27077761)
Nobox (Sequence: GCCAATTA (-): 27064917)
Nobox (Sequence: GGTAATTA (-): 27068071)
Nobox (Sequence: AGTAATTA (-): 27070121)
Nobox (Sequence: AGTAATTA (-): 27071602)
Nobox (Sequence: AGTAATTA (-): 27077752)
POU2F1 (Sequence: ATTTACATA (-): 27070310)
POU2F1 (Sequence: ATTAACATA (-): 27091249)
POU2F1 (Sequence: ATTAGCATA (-): 27096883)
SOX9 (Sequence: TCATTGTT (+): 27064802)
SOX9 (Sequence: CTATTGTT (+): 27070250)
SOX9 (Sequence: TTATTGTT (+): 27073431)
SOX9 (Sequence: TTATTGTT (+): 27074017)
SOX9 (Sequence: TTATTGTT (+): 27076558)
SOX9 (Sequence: TTATTGTT (+): 27086754)
SOX9 (Sequence: TCATTGTT (+): 27093064)
POU5F1 (Sequence: TTTGCAT (-): 27075532)
POU5F1 (Sequence: TTTGCAT (-): 27087975)
POU5F1 (Sequence: TTTGCAT (-): 27094656)
Mybl1_1 (Sequence: TAACGGTT (-): 27076680)
Mybl1_1 (Sequence: TAACGGTT (-): 27076892)
Mybl1_1 (Sequence: TAACGGTT (-): 27080292)
Mybl1_1 (Sequence: TAACGGTT (-): 27086876)
Mybl1_1 (Sequence: TAACGGTT (-): 27087089)
A-MYB (Sequence: CCAACTGTCT (-): 27070258)
RFX4_1 (Sequence: CGTAGCAAC (+): 27097794)
RHOXF1 (Sequence: TAAGCT (+): 27064986)
RHOXF1 (Sequence: TAATCC (+): 27065504)
RHOXF1 (Sequence: TGAGCC (+): 27065687)
RHOXF1 (Sequence: TAAGCC (+): 27066287)
RHOXF1 (Sequence: TAAGCT (+): 27066488)
RHOXF1 (Sequence: TGATCT (+): 27068561)
RHOXF1 (Sequence: TGATCC (+): 27068783)
RHOXF1 (Sequence: TAATCT (+): 27070002)
RHOXF1 (Sequence: TGAGCT (+): 27071356)
RHOXF1 (Sequence: TAATCT (+): 27071731)
RHOXF1 (Sequence: TGAGCC (+): 27072157)
RHOXF1 (Sequence: TGATCC (+): 27072269)
RHOXF1 (Sequence: TGAGCT (+): 27072662)
RHOXF1 (Sequence: TGAGCT (+): 27072667)
RHOXF1 (Sequence: TGATCT (+): 27072912)
RHOXF1 (Sequence: TAAGCT (+): 27073647)
RHOXF1 (Sequence: TGATCC (+): 27074051)
RHOXF1 (Sequence: TAATCT (+): 27074059)
RHOXF1 (Sequence: TGATCT (+): 27074289)
RHOXF1 (Sequence: TGATCT (+): 27076648)
RHOXF1 (Sequence: TAAGCT (+): 27080326)
RHOXF1 (Sequence: TGATCC (+): 27081818)
RHOXF1 (Sequence: TGATCC (+): 27082294)
RHOXF1 (Sequence: TGATCC (+): 27082537)
RHOXF1 (Sequence: TAATCT (+): 27083203)
RHOXF1 (Sequence: TGATCC (+): 27083479)
RHOXF1 (Sequence: TGAGCT (+): 27083522)
RHOXF1 (Sequence: TGATCT (+): 27083598)
RHOXF1 (Sequence: TGATCC (+): 27084166)
RHOXF1 (Sequence: TGAGCT (+): 27084344)
RHOXF1 (Sequence: TGAGCT (+): 27086192)
RHOXF1 (Sequence: TGAGCT (+): 27086616)
RHOXF1 (Sequence: TGATCT (+): 27086844)
RHOXF1 (Sequence: TAATCT (+): 27087555)
RHOXF1 (Sequence: TGATCC (+): 27088902)
RHOXF1 (Sequence: TGATCC (+): 27090407)
RHOXF1 (Sequence: TAATCC (+): 27090516)
RHOXF1 (Sequence: TAAGCT (+): 27091058)
RHOXF1 (Sequence: TAAGCT (+): 27091220)
RHOXF1 (Sequence: TAAGCC (+): 27091353)
RHOXF1 (Sequence: TAAGCT (+): 27091627)
RHOXF1 (Sequence: TGAGCC (+): 27091789)
RHOXF1 (Sequence: TGAGCT (+): 27092036)
RHOXF1 (Sequence: TAATCT (+): 27092842)
RHOXF1 (Sequence: TAAGCC (+): 27092890)
RHOXF1 (Sequence: TAATCC (+): 27093145)
RHOXF1 (Sequence: TAAGCT (+): 27093195)
RHOXF1 (Sequence: TGAGCC (+): 27093556)
RHOXF1 (Sequence: TGATCC (+): 27093565)
RHOXF1 (Sequence: TAATCT (+): 27094504)
RHOXF1 (Sequence: TAAGCC (+): 27096079)
RHOXF1 (Sequence: TAATCC (+): 27096100)
RHOXF1 (Sequence: TAAGCT (+): 27096299)
RHOXF1 (Sequence: TGAGCT (+): 27096354)
RHOXF1 (Sequence: TGAGCT (+): 27096403)
RHOXF1 (Sequence: TAAGCT (+): 27096816)
RHOXF1 (Sequence: TGAGCT (+): 27097302)
RHOXF1 (Sequence: TGATCC (+): 27097698)
RHOXF1 (Sequence: TAAGCT (+): 27097893)
RHOXF1 (Sequence: TAAGCC (+): 27097931)
Rhox11 (Sequence: ATAACAGCG (-): 27067454)
Rhox11 (Sequence: ATAACAGCA (-): 27068003)
Rhox11 (Sequence: TTTACACCG (-): 27088596)
Rhox11 (Sequence: TTAACAGCA (-): 27092930)
FOXO3_hsa (Sequence: GTAAACAA (+): 27068487)
RFX4_2 (Sequence: GTAACCACG (-): 27073592)
Gata4 (Sequence: AGATAAC (-): 27092133)
Gata4 (Sequence: AGATAAC (-): 27095275)
Gata4 (Sequence: AGATAAG (-): 27096296)
FOXO3_hsa (Sequence: TTGTTTAC (-): 27073096)
Gata4 (Sequence: CTTATCT (+): 27064591)
Gata4 (Sequence: CTTATCT (+): 27064635)
Gata4 (Sequence: CTTATCT (+): 27069894)
Gata4 (Sequence: GTTATCT (+): 27092690)
Gata4 (Sequence: GTTATCT (+): 27094255)
Gata4 (Sequence: CTTATCT (+): 27097172)
Sox5 (Sequence: AACAAT (-): 27065246)
Sox5 (Sequence: AACAAT (-): 27067567)
Sox5 (Sequence: AACAAT (-): 27068038)
Sox5 (Sequence: AACAAT (-): 27068152)
Sox5 (Sequence: AACAAT (-): 27068274)
Sox5 (Sequence: AACAAT (-): 27068601)
Sox5 (Sequence: AACAAT (-): 27068649)
Sox5 (Sequence: AACAAT (-): 27075152)
Sox5 (Sequence: AACAAT (-): 27089874)
Sox5 (Sequence: AACAAT (-): 27091237)
Sox5 (Sequence: AACAAT (-): 27091273)
Sox5 (Sequence: AACAAT (-): 27091758)
Sox5 (Sequence: AACAAT (-): 27093974)