Predicted piRNA cluster no. 76     previous   next

Show proTRAC run info

Show proTRAC cluster info

Hide read coverage
1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
2702342
2710021
Gene Set
RepeatMasker
Mapped
Reads
11.77
plus strand
minus strand
11.77
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. GYPSY-20_Dsub: 2702331-2702766 (-), Divergence to consensus: 0.5%
2. TE-621_Dsub: 2702767-2708591 (-), Divergence to consensus: 0.2%
3. TE-180_Dsub: 2708598-2708714 (-), Divergence to consensus: 8.1%
4. TE-621_Dsub: 2708716-2709563 (-), Divergence to consensus: 1.5%
5. TE-576_Dsub: 2709564-2709600 (-), Divergence to consensus: 2.1%
6. GYPSY-20_Dsub: 2709601-2710036 (-), Divergence to consensus: 0.5%

Transcription Factor Binding Sites
FOXP1 (Sequence: TGTTTAC (-): 2704400)
FOXP1 (Sequence: TGTTTAC (-): 2706312)
FIGLA (Sequence: TACAGGTGTA (-): 2703784)
Lhx8 (Sequence: TTAATTAA (-): 2705969)
Rhox11 (Sequence: TGCTGTTAT (+): 2706794)
Rhox11 (Sequence: CGCTGTTAT (+): 2707344)
FOXP1 (Sequence: GTAAACA (+): 2703974)
FOXO3_mmu (Sequence: TGTTTTCC (-): 2704637)
FOXO3_mmu (Sequence: TGTTTTCC (-): 2706509)
Nobox (Sequence: TAATTGCC (+): 2704668)
Nobox (Sequence: TAATTGGT (+): 2705974)
Nobox (Sequence: TAATTACC (+): 2706727)
RHOXF1 (Sequence: GGCTTA (-): 2702434)
RHOXF1 (Sequence: GGATCA (-): 2702562)
RHOXF1 (Sequence: AGATTA (-): 2703699)
RHOXF1 (Sequence: AGATCA (-): 2706239)
RHOXF1 (Sequence: AGCTTA (-): 2708319)
RHOXF1 (Sequence: GGCTTA (-): 2708520)
RHOXF1 (Sequence: GGCTCA (-): 2709305)
RHOXF1 (Sequence: GGATTA (-): 2709492)
RHOXF1 (Sequence: GGCTTA (-): 2709704)
RHOXF1 (Sequence: GGATCA (-): 2709832)
FOXO3_mmu (Sequence: TGTAAACA (+): 2703973)
Sox5 (Sequence: ATTGTT (+): 2703020)
Sox5 (Sequence: ATTGTT (+): 2703800)
Sox5 (Sequence: ATTGTT (+): 2704433)
Sox5 (Sequence: ATTGTT (+): 2706151)
Sox5 (Sequence: ATTGTT (+): 2706199)
Sox5 (Sequence: ATTGTT (+): 2706526)
Sox5 (Sequence: ATTGTT (+): 2706648)
Sox5 (Sequence: ATTGTT (+): 2706762)
Sox5 (Sequence: ATTGTT (+): 2707234)
Sox5 (Sequence: ATTGTT (+): 2708622)
POU2F1 (Sequence: ATTTACATA (-): 2703531)
SOX9 (Sequence: TTATTGTT (+): 2703798)
SOX9 (Sequence: TTATTGTT (+): 2706646)
SOX9 (Sequence: TTATTGTT (+): 2707232)
SOX9 (Sequence: TTATTGTT (+): 2708620)
POU5F1 (Sequence: TTTGCAT (-): 2708928)
RHOXF1 (Sequence: TGATCT (+): 2702403)
RHOXF1 (Sequence: TAAGCT (+): 2703212)
RHOXF1 (Sequence: TAATCT (+): 2703248)
RHOXF1 (Sequence: TGATCT (+): 2703733)
RHOXF1 (Sequence: TGAGCT (+): 2704573)
RHOXF1 (Sequence: TGATCT (+): 2704735)
RHOXF1 (Sequence: TAATCT (+): 2704948)
RHOXF1 (Sequence: TGAGCC (+): 2705371)
RHOXF1 (Sequence: TGAGCT (+): 2705877)
RHOXF1 (Sequence: TGAGCT (+): 2705882)
RHOXF1 (Sequence: TGATCT (+): 2706127)
RHOXF1 (Sequence: TAAGCT (+): 2706862)
RHOXF1 (Sequence: TGATCC (+): 2707266)
RHOXF1 (Sequence: TAATCT (+): 2707274)
RHOXF1 (Sequence: TGATCT (+): 2707504)
RHOXF1 (Sequence: TGATCT (+): 2709673)
RFX4_2 (Sequence: GTAACCACG (-): 2706807)
FOXO3_hsa (Sequence: TTGTTTAC (-): 2706311)
Gata4 (Sequence: CTTATCT (+): 2703115)
Sox5 (Sequence: AACAAT (-): 2708360)