Predicted piRNA cluster no. 12     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrA_v4 
374034
387966
Gene Set
RepeatMasker
Mapped
Reads
85.58
plus strand
minus strand
85.58
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-634_Dsub: 372489-374491 (-), Divergence to consensus: 3.6%
2. TE-600_Dsub: 374493-374621 (-), Divergence to consensus: 23.3%
3. TE-634_Dsub: 374623-374651 (-), Divergence to consensus: 0%
4. TE-614_Dsub: 374653-374950 (-), Divergence to consensus: 22.8%
5. TE-634_Dsub: 374961-375907 (-), Divergence to consensus: 0.9%
6. TE-387_Dsub: 375875-375951 (-), Divergence to consensus: 16.9%
7. TE-556_Dsub: 375902-376668 (+), Divergence to consensus: 9.2%
8. TE-634_Dsub: 376466-377749 (-), Divergence to consensus: 5%
9. TE-614_Dsub: 377770-378043 (-), Divergence to consensus: 21.7%
10. TE-565_Dsub: 377909-378060 (+), Divergence to consensus: 33%
11. BILBO-1_Dsub: 378064-380059 (+), Divergence to consensus: 2.6%
12. BILBO-1_Dsub: 380059-380517 (-), Divergence to consensus: 2.8%
13. BILBO-1_Dsub: 380517-384040 (+), Divergence to consensus: 3.5%
14. TE-634_Dsub: 384041-386044 (-), Divergence to consensus: 3.5%
15. TE-614_Dsub: 386046-386065 (-), Divergence to consensus: 20.2%
16. TE-604_Dsub: 386066-386242 (+), Divergence to consensus: 38.9%
17. TABOR-1_Dsub: 386202-386320 (-), Divergence to consensus: 20.2%
18. TE-614_Dsub: 386321-386336 (-), Divergence to consensus: 20.2%
19. TE-634_Dsub: 386345-388377 (-), Divergence to consensus: 1.3%

Transcription Factor Binding Sites
FOXP1 (Sequence: TGTTTAC (-): 382442)
FIGLA (Sequence: AACAGGTGTT (-): 380316)
FIGLA (Sequence: ACCACCTGGT (-): 383055)
FIGLA (Sequence: AACACCTGTT (-): 383774)
Rhox11 (Sequence: CGCTGTTTA (+): 376401)
FOXP1 (Sequence: GTAAACA (+): 378595)
FOXP1 (Sequence: GTAAACA (+): 381649)
FOXO1 (Sequence: GTTGTTTTT (+): 375383)
FOXO1 (Sequence: GCTGTTTAT (+): 376402)
FOXO1 (Sequence: GTTGTTTAC (+): 382440)
POU5F1 (Sequence: ATGCAAA (+): 383699)
FOXO3_mmu (Sequence: TGTTTTCA (-): 376822)
FOXO3_mmu (Sequence: TGTTTACA (-): 382442)
FOXO3_mmu (Sequence: TGTTTAGA (-): 385004)
FOXO3_mmu (Sequence: TGTTTTCA (-): 385117)
FOXO3_mmu (Sequence: TGTTTAGA (-): 387337)
FOXO3_mmu (Sequence: TGTTTTCA (-): 387450)
RHOXF1 (Sequence: GGCTCA (-): 375773)
RHOXF1 (Sequence: AGATCA (-): 376293)
RHOXF1 (Sequence: GGATCA (-): 376317)
RHOXF1 (Sequence: AGATTA (-): 376661)
RHOXF1 (Sequence: AGCTCA (-): 377076)
RHOXF1 (Sequence: AGCTCA (-): 377177)
RHOXF1 (Sequence: GGCTCA (-): 378091)
RHOXF1 (Sequence: AGCTCA (-): 378316)
RHOXF1 (Sequence: AGCTCA (-): 378469)
RHOXF1 (Sequence: GGCTTA (-): 378859)
RHOXF1 (Sequence: AGCTTA (-): 379627)
RHOXF1 (Sequence: GGATTA (-): 380021)
RHOXF1 (Sequence: AGCTCA (-): 380472)
RHOXF1 (Sequence: GGCTCA (-): 380670)
RHOXF1 (Sequence: GGCTCA (-): 381699)
RHOXF1 (Sequence: AGATCA (-): 382128)
RHOXF1 (Sequence: AGCTCA (-): 382550)
RHOXF1 (Sequence: GGCTCA (-): 383095)
RHOXF1 (Sequence: GGATCA (-): 383172)
RHOXF1 (Sequence: GGCTTA (-): 383361)
RHOXF1 (Sequence: AGCTCA (-): 383510)
RHOXF1 (Sequence: AGCTCA (-): 383653)
RHOXF1 (Sequence: AGCTCA (-): 384270)
RHOXF1 (Sequence: GGCTTA (-): 384584)
RHOXF1 (Sequence: GGCTCA (-): 384849)
RHOXF1 (Sequence: AGATTA (-): 384956)
RHOXF1 (Sequence: AGCTCA (-): 385371)
RHOXF1 (Sequence: AGCTCA (-): 385472)
RHOXF1 (Sequence: GGCTTA (-): 386889)
RHOXF1 (Sequence: GGCTCA (-): 387148)
RHOXF1 (Sequence: AGATTA (-): 387289)
RHOXF1 (Sequence: AGCTCA (-): 387704)
RHOXF1 (Sequence: AGCTCA (-): 387805)
FOXO3_mmu (Sequence: TGTAAACA (+): 378594)
FOXO3_mmu (Sequence: TCTAAACA (+): 381241)
Sox5 (Sequence: ATTGTT (+): 377260)
Sox5 (Sequence: ATTGTT (+): 385555)
Sox5 (Sequence: ATTGTT (+): 387888)
FOXO1 (Sequence: GTAAACAGC (-): 381649)
POU2F1 (Sequence: ATTAGCATA (-): 384865)
POU5F1 (Sequence: TTTGCAT (-): 375376)
POU5F1 (Sequence: TTTGCAT (-): 380394)
Mybl1_1 (Sequence: TAACGGTT (-): 375955)
RHOXF1 (Sequence: TGAGCT (+): 374409)
RHOXF1 (Sequence: TGAGCC (+): 375163)
RHOXF1 (Sequence: TGAGCC (+): 376042)
RHOXF1 (Sequence: TGAGCC (+): 376181)
RHOXF1 (Sequence: TGAGCT (+): 377175)
RHOXF1 (Sequence: TAAGCT (+): 377667)
RHOXF1 (Sequence: TGATCC (+): 378069)
RHOXF1 (Sequence: TGATCC (+): 379579)
RHOXF1 (Sequence: TAATCC (+): 379983)
RHOXF1 (Sequence: TGAGCT (+): 380441)
RHOXF1 (Sequence: TAAGCT (+): 381336)
RHOXF1 (Sequence: TAATCC (+): 381903)
RHOXF1 (Sequence: TAATCT (+): 381977)
RHOXF1 (Sequence: TAATCC (+): 382416)
RHOXF1 (Sequence: TGAGCT (+): 383222)
RHOXF1 (Sequence: TGAGCT (+): 383622)
RHOXF1 (Sequence: TGAGCC (+): 384243)
RHOXF1 (Sequence: TGAGCT (+): 384799)
RHOXF1 (Sequence: TGAGCT (+): 385470)
RHOXF1 (Sequence: TGAGCT (+): 385962)
RHOXF1 (Sequence: TGATCC (+): 386385)
RHOXF1 (Sequence: TGAGCC (+): 386547)
RHOXF1 (Sequence: TGAGCT (+): 387098)
RHOXF1 (Sequence: TGAGCT (+): 387803)
Gata4 (Sequence: AGATAAG (-): 375445)
Gata4 (Sequence: AGATAAG (-): 375452)
Gata4 (Sequence: AGATAAG (-): 384524)
Gata4 (Sequence: AGATAAG (-): 384531)
Gata4 (Sequence: AGATAAG (-): 386829)
Gata4 (Sequence: AGATAAG (-): 386836)
FOXO3_hsa (Sequence: TTGTTTAC (-): 382441)
Gata4 (Sequence: GTTATCT (+): 380922)
Sox5 (Sequence: AACAAT (-): 374176)
Sox5 (Sequence: AACAAT (-): 377433)
Sox5 (Sequence: AACAAT (-): 383019)
Sox5 (Sequence: AACAAT (-): 383454)
Sox5 (Sequence: AACAAT (-): 385728)