Predicted piRNA cluster no. 55     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrE_v4 
16286705
16293023
Gene Set
RepeatMasker
Mapped
Reads
6.78
plus strand
minus strand
6.78
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00012537) Tr:4: 16286837-16287046 (-)
2. unknown (unknowndsub_v4_00012537) Tr:4 UTR: 16286837-16286853 (-)

RepeatMasker Annotation
1. GYPSY-7_Dsub: 16286852-16287209 (+), Divergence to consensus: 0%
2. GYPSY-8_Dsub: 16287207-16292536 (+), Divergence to consensus: 0.1%
3. GYPSY-8_Dsub: 16292537-16293627 (+), Divergence to consensus: 0%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAG (-): 16292576)
RFX4_2 (Sequence: CCTAGATAC (+): 16290967)
FIGLA (Sequence: TACAGGTGTT (-): 16290614)
Lhx8 (Sequence: CTAATTAA (-): 16287600)
FOXP1 (Sequence: GTAAACA (+): 16292657)
POU5F1 (Sequence: ATGCAAA (+): 16292571)
RHOXF1 (Sequence: AGATCA (-): 16287312)
RHOXF1 (Sequence: AGATCA (-): 16288168)
RHOXF1 (Sequence: AGATTA (-): 16288492)
RHOXF1 (Sequence: GGATTA (-): 16288638)
RHOXF1 (Sequence: GGCTTA (-): 16288782)
RHOXF1 (Sequence: GGCTCA (-): 16290032)
RHOXF1 (Sequence: AGCTTA (-): 16290069)
RHOXF1 (Sequence: GGATCA (-): 16290388)
RHOXF1 (Sequence: AGATCA (-): 16290587)
RHOXF1 (Sequence: AGATCA (-): 16290687)
RHOXF1 (Sequence: AGATTA (-): 16292217)
RHOXF1 (Sequence: AGCTCA (-): 16292934)
Sox5 (Sequence: ATTGTT (+): 16287834)
Sox5 (Sequence: ATTGTT (+): 16287916)
Sox5 (Sequence: ATTGTT (+): 16288097)
FOXO1 (Sequence: GTAAACAAG (-): 16292657)
Nobox (Sequence: ACTAATTA (-): 16287599)
Nobox (Sequence: ACCAATTA (-): 16292643)
Mybl1_1 (Sequence: AACCGTTA (+): 16292635)
SOX9 (Sequence: TCATTGTT (+): 16287832)
A-MYB (Sequence: CCAACTGCCT (-): 16289103)
RHOXF1 (Sequence: TAAGCT (+): 16286793)
RHOXF1 (Sequence: TAATCT (+): 16287134)
RHOXF1 (Sequence: TGATCT (+): 16288013)
RHOXF1 (Sequence: TAAGCT (+): 16288427)
RHOXF1 (Sequence: TGAGCC (+): 16288964)
RHOXF1 (Sequence: TGATCC (+): 16289075)
RHOXF1 (Sequence: TAATCC (+): 16291287)
RHOXF1 (Sequence: TAAGCC (+): 16292523)
RHOXF1 (Sequence: TAAGCT (+): 16292932)
Rhox11 (Sequence: ATAACACCG (-): 16287895)
FOXO3_hsa (Sequence: GTAAACAA (+): 16292657)
Gata4 (Sequence: AGATAAG (-): 16292439)
Sox5 (Sequence: AACAAT (-): 16287577)
Sox5 (Sequence: AACAAT (-): 16289010)
Sox5 (Sequence: AACAAT (-): 16289266)
Sox5 (Sequence: AACAAT (-): 16291210)
Sox5 (Sequence: AACAAT (-): 16292576)