Predicted piRNA cluster no. 81     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
7753004
7758026
Gene Set
RepeatMasker
Mapped
Reads
5.82
plus strand
minus strand
5.82
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-564_Dsub: 7752275-7757440 (+), Divergence to consensus: 1.2%
2. TE-564_Dsub: 7757439-7758164 (+), Divergence to consensus: 3.6%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAG (-): 7753472)
SOX9 (Sequence: AACAATAG (-): 7757684)
FOXP1 (Sequence: GTAAACA (+): 7753839)
FOXO3_mmu (Sequence: TGTTTAGA (-): 7755307)
Nobox (Sequence: TAATTGCT (+): 7753645)
RHOXF1 (Sequence: GGATCA (-): 7753795)
RHOXF1 (Sequence: AGATCA (-): 7753815)
RHOXF1 (Sequence: AGATTA (-): 7755440)
RHOXF1 (Sequence: AGCTTA (-): 7756118)
RHOXF1 (Sequence: GGCTCA (-): 7756145)
RHOXF1 (Sequence: GGATCA (-): 7756250)
RHOXF1 (Sequence: GGCTTA (-): 7756270)
RHOXF1 (Sequence: AGATTA (-): 7756299)
RHOXF1 (Sequence: GGATCA (-): 7756925)
RHOXF1 (Sequence: AGATTA (-): 7757327)
RHOXF1 (Sequence: AGCTTA (-): 7757438)
RHOXF1 (Sequence: AGATCA (-): 7757913)
RHOXF1 (Sequence: AGCTTA (-): 7758003)
Sox5 (Sequence: ATTGTT (+): 7755069)
FOXO1 (Sequence: GTAAACAGG (-): 7753839)
RHOXF1 (Sequence: TGAGCC (+): 7753399)
RHOXF1 (Sequence: TAATCT (+): 7753462)
RHOXF1 (Sequence: TAAGCC (+): 7756258)
RHOXF1 (Sequence: TGAGCT (+): 7757980)
Rhox11 (Sequence: AATACACCA (-): 7757258)
Gata4 (Sequence: GTTATCT (+): 7755900)
Sox5 (Sequence: AACAAT (-): 7753472)
Sox5 (Sequence: AACAAT (-): 7757684)