Predicted piRNA cluster no. 27     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrA_v4 
21289111
21317024
Gene Set
RepeatMasker
Mapped
Reads
34.3
plus strand
minus strand
34.3
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00010343) Tr:4: 21288979-21296861 (+)
2. unknown (unknowndsub_v4_00010343) Tr:4: 21297356-21298619 (+)

RepeatMasker Annotation
1. TE-561_Dsub: 21298893-21299192 (+), Divergence to consensus: 20.9%
2. TE-356_Dsub: 21299441-21299501 (-), Divergence to consensus: 22.9%
3. TE-608_Dsub: 21299584-21300343 (+), Divergence to consensus: 4.2%
4. TE-608_Dsub: 21299779-21301219 (-), Divergence to consensus: 3.7%
5. TE-561_Dsub: 21301264-21301399 (-), Divergence to consensus: 27.3%
6. TE-622_Dsub: 21301295-21301489 (+), Divergence to consensus: 23.2%
7. TE-167_Dsub: 21301432-21301467 (-), Divergence to consensus: 27.9%
8. TE-593_Dsub: 21301468-21301536 (+), Divergence to consensus: 21.9%
9. TE-557_Dsub: 21301488-21301690 (+), Divergence to consensus: 37.6%
10. TE-167_Dsub: 21301537-21301587 (-), Divergence to consensus: 27.9%
11. TE-83_Dsub: 21301636-21301694 (-), Divergence to consensus: 10.9%
12. TE-468_Dsub: 21301862-21302385 (-), Divergence to consensus: 40.2%
13. TE-322_Dsub: 21302382-21302456 (-), Divergence to consensus: 29.3%
14. TE-433_Dsub: 21302397-21302458 (+), Divergence to consensus: 15%
15. GYPSY-20_Dsub: 21302459-21302900 (+), Divergence to consensus: 0%
16. TE-576_Dsub: 21302901-21302937 (+), Divergence to consensus: 2.1%
17. TE-621_Dsub: 21302938-21303786 (+), Divergence to consensus: 1.2%
18. TE-180_Dsub: 21303787-21303899 (+), Divergence to consensus: 0%
19. TE-621_Dsub: 21303900-21309738 (+), Divergence to consensus: 0.3%
20. GYPSY-20_Dsub: 21309739-21310178 (+), Divergence to consensus: 0.5%
21. TE-613_Dsub: 21310185-21310364 (+), Divergence to consensus: 29.4%
22. TE-622_Dsub: 21310349-21310744 (+), Divergence to consensus: 11.9%
23. TE-586_Dsub: 21310537-21310769 (-), Divergence to consensus: 13.8%
24. P-3_Dsub: 21310740-21310969 (-), Divergence to consensus: 33.7%
25. TE-530_Dsub: 21310970-21311079 (-), Divergence to consensus: 23.6%
26. TE-633_Dsub: 21311146-21311647 (-), Divergence to consensus: 15%
27. TE-556_Dsub: 21311637-21312447 (+), Divergence to consensus: 11.1%
28. TE-236_Dsub: 21312345-21312461 (-), Divergence to consensus: 12.6%
29. TE-633_Dsub: 21312447-21312704 (-), Divergence to consensus: 19.8%
30. TE-633_Dsub: 21312750-21313247 (-), Divergence to consensus: 27.3%
31. TE-633_Dsub: 21313293-21313462 (-), Divergence to consensus: 14.8%
32. TE-581_Dsub: 21313437-21314233 (+), Divergence to consensus: 18.2%
33. TE-392_Dsub: 21314180-21314240 (-), Divergence to consensus: 13.9%
34. TE-633_Dsub: 21314220-21315837 (-), Divergence to consensus: 18.2%
35. TE-633_Dsub: 21315834-21317154 (-), Divergence to consensus: 29.5%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 21289494)
SOX9 (Sequence: AACAATGA (-): 21294622)
SOX9 (Sequence: AACAATGA (-): 21302283)
SOX9 (Sequence: AACAATAA (-): 21303872)
SOX9 (Sequence: AACAATAA (-): 21305251)
SOX9 (Sequence: AACAATAA (-): 21305837)
SOX9 (Sequence: AACAATAA (-): 21308685)
RFX4_2 (Sequence: CATGGATAC (+): 21290288)
RFX4_2 (Sequence: CGTGGTTAC (+): 21305675)
FOXP1 (Sequence: TGTTTAC (-): 21299659)
FOXP1 (Sequence: TGTTTAC (-): 21308510)
FIGLA (Sequence: TACACCTGTA (-): 21308697)
Lhx8 (Sequence: TTAATTAA (-): 21306514)
Rhox11 (Sequence: TGGTGTAAT (+): 21300801)
Rhox11 (Sequence: TGCTGTTTT (+): 21301740)
FOXP1 (Sequence: GTAAACA (+): 21301138)
FOXP1 (Sequence: GTAAACA (+): 21306172)
FOXP1 (Sequence: GTAAACA (+): 21308084)
FOXP1 (Sequence: GTAAACA (+): 21314297)
FOXO1 (Sequence: GTTGTTTAC (+): 21299657)
POU5F1 (Sequence: ATGCAAA (+): 21297692)
POU5F1 (Sequence: ATGCAAA (+): 21299561)
POU5F1 (Sequence: ATGCAAA (+): 21303567)
POU5F1 (Sequence: ATGCAAA (+): 21311974)
POU5F1 (Sequence: ATGCAAA (+): 21312945)
POU5F1 (Sequence: ATGCAAA (+): 21313963)
POU5F1 (Sequence: ATGCAAA (+): 21316414)
POU5F1 (Sequence: ATGCAAA (+): 21316852)
FOXO3_mmu (Sequence: TGTTTACA (-): 21299659)
FOXO3_mmu (Sequence: TGTTTTGC (-): 21301743)
FOXO3_mmu (Sequence: TGTTTACA (-): 21308510)
FOXO3_mmu (Sequence: TGTTTAGA (-): 21312895)
FOXO3_mmu (Sequence: TGTTTAGA (-): 21316802)
POU2F1 (Sequence: TATGTAAAT (+): 21308951)
Nobox (Sequence: TAATTGGT (+): 21302063)
RHOXF1 (Sequence: AGCTTA (-): 21289255)
RHOXF1 (Sequence: GGCTCA (-): 21289409)
RHOXF1 (Sequence: AGCTCA (-): 21289998)
RHOXF1 (Sequence: AGATCA (-): 21296762)
RHOXF1 (Sequence: AGATCA (-): 21298263)
RHOXF1 (Sequence: AGCTCA (-): 21298496)
RHOXF1 (Sequence: GGATTA (-): 21299228)
RHOXF1 (Sequence: GGATCA (-): 21300885)
RHOXF1 (Sequence: AGCTCA (-): 21301599)
RHOXF1 (Sequence: AGATCA (-): 21302823)
RHOXF1 (Sequence: AGATCA (-): 21304981)
RHOXF1 (Sequence: AGATTA (-): 21305211)
RHOXF1 (Sequence: GGATCA (-): 21305219)
RHOXF1 (Sequence: AGCTTA (-): 21305623)
RHOXF1 (Sequence: AGATCA (-): 21306358)
RHOXF1 (Sequence: AGCTCA (-): 21306603)
RHOXF1 (Sequence: GGATCA (-): 21307002)
RHOXF1 (Sequence: GGCTCA (-): 21307114)
RHOXF1 (Sequence: AGATTA (-): 21307537)
RHOXF1 (Sequence: AGATCA (-): 21307750)
RHOXF1 (Sequence: AGCTCA (-): 21307912)
RHOXF1 (Sequence: AGATCA (-): 21308752)
RHOXF1 (Sequence: AGATTA (-): 21309237)
RHOXF1 (Sequence: AGCTTA (-): 21309273)
RHOXF1 (Sequence: AGATCA (-): 21310101)
RHOXF1 (Sequence: GGATCA (-): 21310371)
RHOXF1 (Sequence: GGCTTA (-): 21311536)
RHOXF1 (Sequence: AGATCA (-): 21312064)
RHOXF1 (Sequence: GGATCA (-): 21312088)
RHOXF1 (Sequence: AGCTTA (-): 21312151)
RHOXF1 (Sequence: GGATTA (-): 21312598)
RHOXF1 (Sequence: AGATTA (-): 21312840)
RHOXF1 (Sequence: GGCTCA (-): 21313913)
RHOXF1 (Sequence: GGCTTA (-): 21315433)
RHOXF1 (Sequence: AGATCA (-): 21315529)
RHOXF1 (Sequence: AGATTA (-): 21316309)
RHOXF1 (Sequence: AGATTA (-): 21316747)
FOXO3_mmu (Sequence: TCAAAACA (+): 21291084)
FOXO3_mmu (Sequence: TCAAAACA (+): 21291444)
FOXO3_mmu (Sequence: TCAAAACA (+): 21291888)
FOXO3_mmu (Sequence: TCAAAACA (+): 21292164)
FOXO3_mmu (Sequence: TCAAAACA (+): 21292692)
FOXO3_mmu (Sequence: TCAAAACA (+): 21292968)
FOXO3_mmu (Sequence: TCAAAACA (+): 21293580)
FOXO3_mmu (Sequence: TCAAAACA (+): 21294276)
FOXO3_mmu (Sequence: TCAAAACA (+): 21295392)
FOXO3_mmu (Sequence: TCAAAACA (+): 21295836)
FOXO3_mmu (Sequence: TCAAAACA (+): 21296004)
FOXO3_mmu (Sequence: TGAAAACA (+): 21296226)
FOXO3_mmu (Sequence: TGTAAACA (+): 21301137)
FOXO3_mmu (Sequence: GGAAAACA (+): 21305974)
FOXO3_mmu (Sequence: GGAAAACA (+): 21307846)
Sox5 (Sequence: ATTGTT (+): 21300935)
Sox5 (Sequence: ATTGTT (+): 21304126)
FOXO1 (Sequence: GTAAACAAC (-): 21301138)
FOXO1 (Sequence: AAAAACAGG (-): 21301539)
FOXO1 (Sequence: AAAAACAAC (-): 21316087)
FOXO1 (Sequence: AAAAACAAC (-): 21316521)
Nobox (Sequence: ACCAATTA (-): 21297574)
Nobox (Sequence: GGTAATTA (-): 21305756)
Nobox (Sequence: ACCAATTA (-): 21306509)
Nobox (Sequence: GGCAATTA (-): 21307815)
Mybl1_1 (Sequence: AACCGTTA (+): 21314161)
POU5F1 (Sequence: TTTGCAT (-): 21299126)
POU5F1 (Sequence: TTTGCAT (-): 21313298)
RHOXF1 (Sequence: TAAGCC (+): 21292340)
RHOXF1 (Sequence: TAAGCC (+): 21294788)
RHOXF1 (Sequence: TAAGCC (+): 21295040)
RHOXF1 (Sequence: TGATCT (+): 21298612)
RHOXF1 (Sequence: TGATCC (+): 21299913)
RHOXF1 (Sequence: TGATCC (+): 21302658)
RHOXF1 (Sequence: TAATCC (+): 21303004)
RHOXF1 (Sequence: TGAGCC (+): 21303191)
RHOXF1 (Sequence: TAAGCC (+): 21303966)
RHOXF1 (Sequence: TAAGCT (+): 21304167)
RHOXF1 (Sequence: TGATCT (+): 21306246)
RHOXF1 (Sequence: TAATCT (+): 21308786)
RHOXF1 (Sequence: TGATCC (+): 21309938)
RHOXF1 (Sequence: TGATCT (+): 21311270)
RHOXF1 (Sequence: TGAGCC (+): 21311800)
RHOXF1 (Sequence: TGAGCC (+): 21311952)
RHOXF1 (Sequence: TGAGCT (+): 21312533)
RHOXF1 (Sequence: TGAGCT (+): 21313056)
RHOXF1 (Sequence: TGATCC (+): 21313776)
RHOXF1 (Sequence: TGATCT (+): 21313801)
RHOXF1 (Sequence: TGATCT (+): 21314859)
RHOXF1 (Sequence: TGATCT (+): 21315026)
RHOXF1 (Sequence: TGATCT (+): 21315168)
RHOXF1 (Sequence: TGAGCT (+): 21315638)
RHOXF1 (Sequence: TGAGCT (+): 21316963)
Rhox11 (Sequence: TTTACAGCA (-): 21289818)
Rhox11 (Sequence: ATTACACCA (-): 21299994)
Rhox11 (Sequence: ATAACAGCG (-): 21305138)
Rhox11 (Sequence: ATAACAGCA (-): 21305688)
FOXO3_hsa (Sequence: GTAAACAA (+): 21301138)
FOXO3_hsa (Sequence: GTAAACAA (+): 21306172)
FOXO3_hsa (Sequence: GTAAACAT (+): 21314297)
Gata4 (Sequence: AGATAAC (-): 21296207)
Gata4 (Sequence: AGATAAG (-): 21309369)
Gata4 (Sequence: AGATAAC (-): 21312013)
FOXO3_hsa (Sequence: TTGTTTAC (-): 21299658)
Sox5 (Sequence: AACAAT (-): 21289494)
Sox5 (Sequence: AACAAT (-): 21294622)
Sox5 (Sequence: AACAAT (-): 21299863)
Sox5 (Sequence: AACAAT (-): 21302189)
Sox5 (Sequence: AACAAT (-): 21302283)
Sox5 (Sequence: AACAAT (-): 21303872)
Sox5 (Sequence: AACAAT (-): 21305251)
Sox5 (Sequence: AACAAT (-): 21305723)
Sox5 (Sequence: AACAAT (-): 21305837)
Sox5 (Sequence: AACAAT (-): 21305959)
Sox5 (Sequence: AACAAT (-): 21306286)
Sox5 (Sequence: AACAAT (-): 21306334)
Sox5 (Sequence: AACAAT (-): 21308052)
Sox5 (Sequence: AACAAT (-): 21308685)
Sox5 (Sequence: AACAAT (-): 21309465)
Sox5 (Sequence: AACAAT (-): 21311656)
Sox5 (Sequence: AACAAT (-): 21315826)