Predicted piRNA cluster no. 86     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
19102182
19122310
Gene Set
RepeatMasker
Mapped
Reads
295.33
plus strand
minus strand
295.33
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00007567) Tr:4: 19121994-19122078 (-)
2. unknown (unknowndsub_v4_00007567) Tr:4: 19115054-19115612 (-)
3. unknown (unknowndsub_v4_00007567) Tr:4: 19114737-19114866 (-)
4. unknown (unknowndsub_v4_00007567) Tr:4: 19110854-19111597 (-)
5. unknown (unknowndsub_v4_00007567) Tr:4: 19107165-19107887 (-)
6. unknown (unknowndsub_v4_00007567) Tr:4: 19106433-19106964 (-)
7. unknown (unknowndsub_v4_00007567) Tr:4: 19115101-19115612 (-)
8. unknown (unknowndsub_v4_00007567) Tr:4: 19114852-19114866 (-)
9. unknown (unknowndsub_v4_00007567) Tr:4: 19121994-19122078 (-)
10. unknown (unknowndsub_v4_00007567) Tr:4: 19110854-19111597 (-)
11. unknown (unknowndsub_v4_00007567) Tr:4: 19107165-19107887 (-)
12. unknown (unknowndsub_v4_00007567) Tr:4: 19106433-19106964 (-)
13. unknown (unknowndsub_v4_00007567) Tr:4: 19121994-19122087 (-)
14. unknown (unknowndsub_v4_00007567) Tr:4: 19110854-19111592 (-)
15. unknown (unknowndsub_v4_00007567) Tr:4: 19107165-19107887 (-)
16. unknown (unknowndsub_v4_00007567) Tr:4: 19106433-19106964 (-)
17. unknown (unknowndsub_v4_00007568) Tr:4: 19110866-19111108 (+)
18. unknown (unknowndsub_v4_00007568) Tr:4: 19111211-19111715 (+)
19. unknown (unknowndsub_v4_00007568) Tr:4 UTR: 19111394-19111715 (+)

RepeatMasker Annotation
1. POLINTON-1_Dsub: 19097851-19105899 (+), Divergence to consensus: 0%
2. TE-493_Dsub: 19105892-19107191 (+), Divergence to consensus: 5.7%
3. TE-113_Dsub: 19107969-19108525 (-), Divergence to consensus: 14.5%
4. GYPSY-5_Dsub: 19108472-19110693 (-), Divergence to consensus: 39%
5. TE-113_Dsub: 19110805-19110895 (-), Divergence to consensus: 27.5%
6. TE-113_Dsub: 19111876-19112402 (-), Divergence to consensus: 16.1%
7. TE-113_Dsub: 19112493-19113938 (-), Divergence to consensus: 14%
8. TE-493_Dsub: 19113480-19115815 (+), Divergence to consensus: 6.2%
9. POLINTON-1_Dsub: 19115815-19120088 (+), Divergence to consensus: 0.2%
10. POLINTON-1_Dsub: 19120074-19121019 (+), Divergence to consensus: 0%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAA (-): 19103946)
Lhx8 (Sequence: TTAATTAA (-): 19105464)
Lhx8 (Sequence: TTAATTAA (-): 19105758)
Lhx8 (Sequence: TTAATTAA (-): 19120127)
Rhox11 (Sequence: TGCTGTTTA (+): 19102984)
FOXP1 (Sequence: GTAAACA (+): 19102533)
FOXP1 (Sequence: GTAAACA (+): 19103976)
FOXP1 (Sequence: GTAAACA (+): 19113854)
FOXP1 (Sequence: GTAAACA (+): 19114229)
FOXP1 (Sequence: GTAAACA (+): 19117580)
FOXO1 (Sequence: GTTGTTTAT (+): 19103096)
FOXO1 (Sequence: CTTGTTTTC (+): 19115984)
FOXO1 (Sequence: CTTGTTTTT (+): 19116710)
POU5F1 (Sequence: ATGCAAA (+): 19113965)
POU5F1 (Sequence: ATGCAAA (+): 19118003)
FOXO3_mmu (Sequence: TGTTTTCA (-): 19113499)
FOXO3_mmu (Sequence: TGTTTTCC (-): 19115964)
POU2F1 (Sequence: TATTCAAAT (+): 19103882)
POU2F1 (Sequence: TATGCTAAT (+): 19117791)
POU2F1 (Sequence: TATGCAAAT (+): 19118002)
POU2F1 (Sequence: TATTCAAAT (+): 19118152)
Nobox (Sequence: TAATTGGC (+): 19121778)
RHOXF1 (Sequence: GGCTTA (-): 19102227)
RHOXF1 (Sequence: GGCTTA (-): 19103169)
RHOXF1 (Sequence: AGATCA (-): 19103546)
RHOXF1 (Sequence: AGATCA (-): 19103664)
RHOXF1 (Sequence: AGATTA (-): 19103676)
RHOXF1 (Sequence: AGCTTA (-): 19104297)
RHOXF1 (Sequence: AGCTTA (-): 19104541)
RHOXF1 (Sequence: GGATCA (-): 19104737)
RHOXF1 (Sequence: GGATCA (-): 19104817)
RHOXF1 (Sequence: AGATCA (-): 19105884)
RHOXF1 (Sequence: AGCTCA (-): 19105923)
RHOXF1 (Sequence: GGATTA (-): 19106014)
RHOXF1 (Sequence: GGCTCA (-): 19106785)
RHOXF1 (Sequence: GGCTCA (-): 19109661)
RHOXF1 (Sequence: AGCTTA (-): 19113587)
RHOXF1 (Sequence: GGCTTA (-): 19114344)
RHOXF1 (Sequence: AGCTCA (-): 19114545)
RHOXF1 (Sequence: GGATTA (-): 19114636)
RHOXF1 (Sequence: GGCTCA (-): 19115407)
RHOXF1 (Sequence: GGATCA (-): 19116327)
RHOXF1 (Sequence: GGCTTA (-): 19116885)
RHOXF1 (Sequence: GGCTCA (-): 19117068)
RHOXF1 (Sequence: AGATTA (-): 19117270)
RHOXF1 (Sequence: GGATCA (-): 19117396)
RHOXF1 (Sequence: AGCTCA (-): 19118143)
RHOXF1 (Sequence: GGATTA (-): 19120018)
RHOXF1 (Sequence: AGATCA (-): 19120424)
RHOXF1 (Sequence: GGCTTA (-): 19121093)
RHOXF1 (Sequence: GGATTA (-): 19121910)
FOXO3_mmu (Sequence: TGAAAACA (+): 19104303)
FOXO3_mmu (Sequence: TGAAAACA (+): 19104534)
FOXO3_mmu (Sequence: GGAAAACA (+): 19108894)
FOXO3_mmu (Sequence: TGTAAACA (+): 19113853)
FOXO3_mmu (Sequence: TGTAAACA (+): 19117579)
Sox5 (Sequence: ATTGTT (+): 19102295)
Sox5 (Sequence: ATTGTT (+): 19102375)
Sox5 (Sequence: ATTGTT (+): 19106299)
Sox5 (Sequence: ATTGTT (+): 19106334)
Sox5 (Sequence: ATTGTT (+): 19106568)
Sox5 (Sequence: ATTGTT (+): 19111007)
Sox5 (Sequence: ATTGTT (+): 19114921)
Sox5 (Sequence: ATTGTT (+): 19114956)
Sox5 (Sequence: ATTGTT (+): 19115190)
Sox5 (Sequence: ATTGTT (+): 19115962)
Sox5 (Sequence: ATTGTT (+): 19116179)
Sox5 (Sequence: ATTGTT (+): 19119145)
Sox5 (Sequence: ATTGTT (+): 19122006)
FOXO1 (Sequence: GTAAACAAG (-): 19102533)
FOXO1 (Sequence: GTAAACAAC (-): 19103976)
FOXO1 (Sequence: GAAAACAGC (-): 19104181)
FOXO1 (Sequence: GAAAACAGC (-): 19104535)
FOXO1 (Sequence: GTAAACAGG (-): 19113854)
FOXO1 (Sequence: GTAAACAAC (-): 19114229)
Nobox (Sequence: ACCAATTA (-): 19107146)
Nobox (Sequence: ACCAATTA (-): 19115770)
Nobox (Sequence: AGCAATTA (-): 19116520)
POU2F1 (Sequence: ATTAAAATA (-): 19104886)
POU2F1 (Sequence: ATTTAAATA (-): 19116236)
POU2F1 (Sequence: ATTTGCATA (-): 19118256)
POU2F1 (Sequence: ATTAGAATA (-): 19118884)
POU2F1 (Sequence: ATTTACATA (-): 19120230)
SOX9 (Sequence: CTATTGTT (+): 19102293)
SOX9 (Sequence: CCATTGTT (+): 19106297)
SOX9 (Sequence: CTATTGTT (+): 19106332)
SOX9 (Sequence: CCATTGTT (+): 19111005)
SOX9 (Sequence: CCATTGTT (+): 19114919)
SOX9 (Sequence: CTATTGTT (+): 19114954)
POU5F1 (Sequence: TTTGCAT (-): 19103066)
POU5F1 (Sequence: TTTGCAT (-): 19118257)
RHOXF1 (Sequence: TGATCC (+): 19103002)
RHOXF1 (Sequence: TGATCC (+): 19103058)
RHOXF1 (Sequence: TGATCT (+): 19103413)
RHOXF1 (Sequence: TAAGCC (+): 19104004)
RHOXF1 (Sequence: TGAGCT (+): 19104295)
RHOXF1 (Sequence: TGATCC (+): 19104589)
RHOXF1 (Sequence: TAATCC (+): 19104801)
RHOXF1 (Sequence: TAATCT (+): 19105229)
RHOXF1 (Sequence: TAATCT (+): 19105261)
RHOXF1 (Sequence: TAATCC (+): 19105376)
RHOXF1 (Sequence: TAAGCT (+): 19105921)
RHOXF1 (Sequence: TGATCT (+): 19106869)
RHOXF1 (Sequence: TGATCT (+): 19106909)
RHOXF1 (Sequence: TAATCC (+): 19108032)
RHOXF1 (Sequence: TAATCC (+): 19109291)
RHOXF1 (Sequence: TGAGCC (+): 19109517)
RHOXF1 (Sequence: TAAGCC (+): 19110087)
RHOXF1 (Sequence: TAATCT (+): 19110403)
RHOXF1 (Sequence: TGAGCT (+): 19110763)
RHOXF1 (Sequence: TGATCC (+): 19112285)
RHOXF1 (Sequence: TGATCC (+): 19112336)
RHOXF1 (Sequence: TGAGCT (+): 19112496)
RHOXF1 (Sequence: TGATCT (+): 19112587)
RHOXF1 (Sequence: TGAGCC (+): 19114205)
RHOXF1 (Sequence: TAAGCT (+): 19114543)
RHOXF1 (Sequence: TGATCT (+): 19115492)
RHOXF1 (Sequence: TGATCT (+): 19115532)
RHOXF1 (Sequence: TAAGCC (+): 19115827)
RHOXF1 (Sequence: TAATCT (+): 19116504)
RHOXF1 (Sequence: TAAGCT (+): 19116764)
RHOXF1 (Sequence: TGAGCC (+): 19117369)
RHOXF1 (Sequence: TGAGCT (+): 19120173)
RHOXF1 (Sequence: TAATCC (+): 19120623)
RHOXF1 (Sequence: TGATCC (+): 19122028)
Rhox11 (Sequence: ATAACACCA (-): 19102247)
Rhox11 (Sequence: AAAACAGCA (-): 19104182)
Rhox11 (Sequence: TTTACAGCG (-): 19118110)
FOXO3_hsa (Sequence: GTAAACAA (+): 19102533)
FOXO3_hsa (Sequence: GTAAACAA (+): 19103976)
FOXO3_hsa (Sequence: GTAAACAA (+): 19114229)
FOXO3_hsa (Sequence: GTAAACAA (+): 19117580)
RFX4_2 (Sequence: GTATCCATG (-): 19105512)
RFX4_2 (Sequence: GTATCCATG (-): 19109340)
Gata4 (Sequence: AGATAAG (-): 19115939)
Gata4 (Sequence: CTTATCT (+): 19105116)
Gata4 (Sequence: CTTATCT (+): 19117941)
Gata4 (Sequence: GTTATCT (+): 19118968)
Sox5 (Sequence: AACAAT (-): 19102452)
Sox5 (Sequence: AACAAT (-): 19103436)
Sox5 (Sequence: AACAAT (-): 19103946)
Sox5 (Sequence: AACAAT (-): 19114482)
Sox5 (Sequence: AACAAT (-): 19116839)
Sox5 (Sequence: AACAAT (-): 19117583)
Sox5 (Sequence: AACAAT (-): 19121985)