Predicted piRNA cluster no. 10     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrA_v4 
388
17500
Gene Set
RepeatMasker
Mapped
Reads
135.98
plus strand
minus strand
135.98
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00008232) Tr:4: 99-732 (+)
2. unknown (unknowndsub_v4_00008232) Tr:4: 773-1229 (+)
3. unknown (unknowndsub_v4_00008232) Tr:4: 1302-1514 (+)
4. unknown (unknowndsub_v4_00008232) Tr:4: 1614-2157 (+)
5. unknown (unknowndsub_v4_00008233) Tr:4: 17083-17299 (+)
6. unknown (unknowndsub_v4_00008233) Tr:4: 17384-17572 (+)

RepeatMasker Annotation
1. TE-558_Dsub: 3024-3301 (+), Divergence to consensus: 26.7%
2. TE-643_Dsub: 3255-8639 (-), Divergence to consensus: 0.6%
3. TE-456_Dsub: 8642-8699 (-), Divergence to consensus: 11.2%
4. TE-184_Dsub: 8694-8885 (+), Divergence to consensus: 8.8%
5. TE-558_Dsub: 8876-8899 (+), Divergence to consensus: 0%
6. TE-250_Dsub: 8900-9043 (-), Divergence to consensus: 46.8%
7. P-3_Dsub: 9091-9148 (-), Divergence to consensus: 35.1%
8. P-1_Dsub: 9149-9259 (+), Divergence to consensus: 14.4%
9. TE-558_Dsub: 9260-9373 (+), Divergence to consensus: 10.5%
10. TE-643_Dsub: 9374-10444 (+), Divergence to consensus: 5.6%
11. TE-622_Dsub: 10409-10721 (+), Divergence to consensus: 14.4%
12. TE-633_Dsub: 10709-11039 (-), Divergence to consensus: 10.3%
13. TE-643_Dsub: 11026-14275 (+), Divergence to consensus: 1.1%
14. TE-581_Dsub: 14272-15476 (-), Divergence to consensus: 12.6%
15. TE-622_Dsub: 15297-15502 (+), Divergence to consensus: 29.1%
16. TE-502_Dsub: 15453-15617 (-), Divergence to consensus: 11%
17. TE-605_Dsub: 15525-16277 (+), Divergence to consensus: 35.7%
18. TE-111_Dsub: 16196-16297 (-), Divergence to consensus: 31.7%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 14128)
SOX9 (Sequence: AACAATAG (-): 16481)
FOXP1 (Sequence: TGTTTAC (-): 16619)
FIGLA (Sequence: TCCAGCTGTA (-): 2015)
FIGLA (Sequence: TACACGTGTA (-): 2736)
Lhx8 (Sequence: TTAATTAA (-): 3647)
Lhx8 (Sequence: TTAATTAA (-): 14260)
Rhox11 (Sequence: TGGTGTATA (+): 5109)
Rhox11 (Sequence: TGCTGTTAA (+): 11172)
Rhox11 (Sequence: CGGTGTTTA (+): 15781)
Rhox11 (Sequence: TGGTGTAAT (+): 15852)
Rhox11 (Sequence: TGCTGTTAA (+): 17372)
FOXO1 (Sequence: GTTGTTTTT (+): 6889)
POU5F1 (Sequence: ATGCAAA (+): 9771)
POU5F1 (Sequence: ATGCAAA (+): 16540)
FOXO3_mmu (Sequence: TGTTTTGA (-): 7015)
FOXO3_mmu (Sequence: TGTTTTCA (-): 8098)
FOXO3_mmu (Sequence: TGTTTTGC (-): 12986)
RHOXF1 (Sequence: GGCTCA (-): 2105)
RHOXF1 (Sequence: GGCTTA (-): 2732)
RHOXF1 (Sequence: AGCTTA (-): 4262)
RHOXF1 (Sequence: AGCTCA (-): 4763)
RHOXF1 (Sequence: AGATTA (-): 5282)
RHOXF1 (Sequence: AGATCA (-): 5372)
RHOXF1 (Sequence: AGATTA (-): 5480)
RHOXF1 (Sequence: AGATTA (-): 5639)
RHOXF1 (Sequence: AGATCA (-): 5738)
RHOXF1 (Sequence: GGATCA (-): 5756)
RHOXF1 (Sequence: GGATCA (-): 5879)
RHOXF1 (Sequence: AGATCA (-): 8079)
RHOXF1 (Sequence: AGCTCA (-): 8542)
RHOXF1 (Sequence: GGCTCA (-): 10748)
RHOXF1 (Sequence: GGCTCA (-): 10903)
RHOXF1 (Sequence: AGCTTA (-): 11192)
RHOXF1 (Sequence: GGATTA (-): 12651)
RHOXF1 (Sequence: AGATCA (-): 12917)
RHOXF1 (Sequence: AGATTA (-): 13734)
RHOXF1 (Sequence: AGATCA (-): 14371)
RHOXF1 (Sequence: GGATCA (-): 14395)
RHOXF1 (Sequence: AGCTTA (-): 14458)
RHOXF1 (Sequence: AGATTA (-): 15088)
RHOXF1 (Sequence: GGATCA (-): 15112)
RHOXF1 (Sequence: AGCTTA (-): 15175)
RHOXF1 (Sequence: AGATTA (-): 15752)
RHOXF1 (Sequence: AGCTCA (-): 16457)
FOXO3_mmu (Sequence: TGAAAACA (+): 2785)
FOXO3_mmu (Sequence: TGAAAACA (+): 16021)
Sox5 (Sequence: ATTGTT (+): 3781)
Sox5 (Sequence: ATTGTT (+): 6956)
Sox5 (Sequence: ATTGTT (+): 11468)
FOXO1 (Sequence: ATAAACAGC (-): 10671)
Nobox (Sequence: AGTAATTA (-): 14726)
Mybl1_1 (Sequence: AACCGTTA (+): 10971)
SOX9 (Sequence: TCATTGTT (+): 3779)
POU5F1 (Sequence: TTTGCAT (-): 8223)
POU5F1 (Sequence: TTTGCAT (-): 9344)
Mybl1_1 (Sequence: TAACGGTT (-): 14756)
RHOXF1 (Sequence: TGATCT (+): 1068)
RHOXF1 (Sequence: TAATCC (+): 1567)
RHOXF1 (Sequence: TAAGCC (+): 1716)
RHOXF1 (Sequence: TGATCC (+): 2767)
RHOXF1 (Sequence: TGATCT (+): 2950)
RHOXF1 (Sequence: TAATCT (+): 4175)
RHOXF1 (Sequence: TGATCT (+): 4989)
RHOXF1 (Sequence: TAATCC (+): 5255)
RHOXF1 (Sequence: TGAGCT (+): 6694)
RHOXF1 (Sequence: TAAGCT (+): 6714)
RHOXF1 (Sequence: TAAGCT (+): 6912)
RHOXF1 (Sequence: TGAGCT (+): 9466)
RHOXF1 (Sequence: TGATCT (+): 9913)
RHOXF1 (Sequence: TGATCC (+): 12027)
RHOXF1 (Sequence: TGATCT (+): 12168)
RHOXF1 (Sequence: TAATCT (+): 12267)
RHOXF1 (Sequence: TAATCT (+): 12426)
RHOXF1 (Sequence: TGATCT (+): 12534)
RHOXF1 (Sequence: TAATCT (+): 12624)
RHOXF1 (Sequence: TGAGCT (+): 13143)
RHOXF1 (Sequence: TAAGCT (+): 13647)
RHOXF1 (Sequence: TGAGCC (+): 14843)
RHOXF1 (Sequence: TGAGCT (+): 16796)
RHOXF1 (Sequence: TAATCC (+): 17337)
Rhox11 (Sequence: TTAACAGCA (-): 6731)
Rhox11 (Sequence: TAAACAGCG (-): 10672)
Rhox11 (Sequence: TATACACCA (-): 12794)
Gata4 (Sequence: AGATAAC (-): 14320)
Gata4 (Sequence: AGATAAG (-): 16426)
Sox5 (Sequence: AACAAT (-): 2190)
Sox5 (Sequence: AACAAT (-): 3191)
Sox5 (Sequence: AACAAT (-): 6438)
Sox5 (Sequence: AACAAT (-): 14128)
Sox5 (Sequence: AACAAT (-): 16025)
Sox5 (Sequence: AACAAT (-): 16481)