Predicted piRNA cluster no. 146     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
2355069
2372747
Gene Set
RepeatMasker
Mapped
Reads
135.63
plus strand
minus strand
135.63
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. GYPSY-2_Dsub: 2351840-2357511 (-), Divergence to consensus: 0%
2. TE-420_Dsub: 2357512-2359473 (-), Divergence to consensus: 0%
3. TE-593_Dsub: 2359474-2360048 (-), Divergence to consensus: 8.2%
4. LOA-1_Dsub: 2360077-2360200 (-), Divergence to consensus: 27.4%
5. TE-524_Dsub: 2360812-2360945 (+), Divergence to consensus: 6.7%
6. TE-588_Dsub: 2360995-2361364 (-), Divergence to consensus: 10.3%
7. TE-613_Dsub: 2361608-2361730 (+), Divergence to consensus: 2.4%
8. TABOR-1_Dsub: 2362133-2362297 (-), Divergence to consensus: 14.6%
9. JOCKEY-5_Dsub: 2362348-2364568 (+), Divergence to consensus: 3.7%
10. TE-627_Dsub: 2364569-2364835 (+), Divergence to consensus: 18.5%
11. JOCKEY-2_Dsub: 2364613-2364902 (+), Divergence to consensus: 8%
12. TE-597_Dsub: 2364879-2364981 (+), Divergence to consensus: 11.7%
13. TE-603_Dsub: 2364957-2364971 (+), Divergence to consensus: 16.6%
14. TE-572_Dsub: 2364972-2365077 (-), Divergence to consensus: 16.3%
15. TE-267_Dsub: 2365631-2365805 (-), Divergence to consensus: 37.3%
16. TE-494_Dsub: 2365750-2366797 (+), Divergence to consensus: 2.1%
17. TE-267_Dsub: 2366572-2366884 (-), Divergence to consensus: 40.3%
18. TE-267_Dsub: 2367037-2367216 (-), Divergence to consensus: 28.8%
19. CR1-3_Dsub: 2367150-2369538 (+), Divergence to consensus: 26.6%
20. CR1-2_Dsub: 2368116-2369681 (-), Divergence to consensus: 8.4%
21. TE-625_Dsub: 2369567-2369695 (-), Divergence to consensus: 20.2%
22. TE-582_Dsub: 2369688-2370297 (+), Divergence to consensus: 22.7%
23. TE-379_Dsub: 2370218-2370305 (-), Divergence to consensus: 18.2%
24. TE-223_Dsub: 2371536-2371588 (+), Divergence to consensus: 25.4%
25. TE-572_Dsub: 2371589-2371694 (-), Divergence to consensus: 18%
26. TE-640_Dsub: 2371690-2372146 (-), Divergence to consensus: 10.2%
27. TE-223_Dsub: 2371695-2371715 (+), Divergence to consensus: 25.4%
28. TE-577_Dsub: 2371697-2372203 (+), Divergence to consensus: 20.1%
29. TE-607_Dsub: 2372147-2372274 (-), Divergence to consensus: 31.7%
30. TE-606_Dsub: 2372206-2372283 (+), Divergence to consensus: 25.7%
31. TE-621_Dsub: 2372271-2372747 (-), Divergence to consensus: 5.6%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAA (-): 2357354)
SOX9 (Sequence: AACAATAA (-): 2363540)
SOX9 (Sequence: AACAATAA (-): 2366311)
SOX9 (Sequence: AACAATAA (-): 2372120)
RFX4_2 (Sequence: CGTAGATAC (+): 2358162)
FIGLA (Sequence: TACAGGTGTA (-): 2357727)
FIGLA (Sequence: AACAGCTGTA (-): 2358136)
FIGLA (Sequence: TCCAGCTGTA (-): 2364332)
FIGLA (Sequence: AACAGCTGTT (-): 2365733)
Lhx8 (Sequence: TTAATTAA (-): 2357938)
Lhx8 (Sequence: TTAATTAG (-): 2370750)
Rhox11 (Sequence: TGGTGTTTT (+): 2355203)
Rhox11 (Sequence: TGCTGTATT (+): 2355550)
Rhox11 (Sequence: CGCTGTTTT (+): 2358831)
Rhox11 (Sequence: CGGTGTAAA (+): 2359110)
Rhox11 (Sequence: CGGTGTAAA (+): 2359124)
FOXO1 (Sequence: GTTGTTTAT (+): 2367108)
POU5F1 (Sequence: ATGCAAA (+): 2359529)
POU5F1 (Sequence: ATGCAAA (+): 2359938)
FOXO3_mmu (Sequence: TGTTTTCA (-): 2361764)
FOXO3_mmu (Sequence: TGTTTAGC (-): 2370509)
FOXO3_mmu (Sequence: TGTTTTCC (-): 2371370)
FOXO3_mmu (Sequence: TGTTTTCA (-): 2371561)
POU2F1 (Sequence: TATGCAAAT (+): 2359937)
POU2F1 (Sequence: TATTCAAAT (+): 2360966)
Nobox (Sequence: TAATTGCT (+): 2357450)
Nobox (Sequence: TAATTACT (+): 2369499)
Nobox (Sequence: TAATTAGT (+): 2370751)
RHOXF1 (Sequence: GGCTTA (-): 2355232)
RHOXF1 (Sequence: AGCTTA (-): 2355619)
RHOXF1 (Sequence: AGCTTA (-): 2356749)
RHOXF1 (Sequence: AGATCA (-): 2357879)
RHOXF1 (Sequence: GGCTTA (-): 2358207)
RHOXF1 (Sequence: AGATTA (-): 2358752)
RHOXF1 (Sequence: GGCTTA (-): 2358968)
RHOXF1 (Sequence: AGCTCA (-): 2359210)
RHOXF1 (Sequence: GGATCA (-): 2360282)
RHOXF1 (Sequence: AGCTTA (-): 2360380)
RHOXF1 (Sequence: AGCTTA (-): 2362501)
RHOXF1 (Sequence: AGCTCA (-): 2362875)
RHOXF1 (Sequence: GGCTTA (-): 2362891)
RHOXF1 (Sequence: AGCTCA (-): 2364052)
RHOXF1 (Sequence: GGCTCA (-): 2364422)
RHOXF1 (Sequence: GGATCA (-): 2364601)
RHOXF1 (Sequence: AGATCA (-): 2364818)
RHOXF1 (Sequence: AGCTTA (-): 2365151)
RHOXF1 (Sequence: GGCTTA (-): 2366875)
RHOXF1 (Sequence: AGATCA (-): 2367928)
RHOXF1 (Sequence: AGCTCA (-): 2369342)
RHOXF1 (Sequence: AGCTTA (-): 2370747)
RHOXF1 (Sequence: AGCTTA (-): 2370961)
RHOXF1 (Sequence: GGATTA (-): 2371148)
RHOXF1 (Sequence: AGCTTA (-): 2371535)
RHOXF1 (Sequence: AGATCA (-): 2372080)
FOXO3_mmu (Sequence: GGAAAACA (+): 2356856)
FOXO3_mmu (Sequence: TGAAAACA (+): 2372521)
RFX4_1 (Sequence: GTTGCTACG (-): 2360527)
Sox5 (Sequence: ATTGTT (+): 2356180)
Sox5 (Sequence: ATTGTT (+): 2360973)
Sox5 (Sequence: ATTGTT (+): 2360981)
Sox5 (Sequence: ATTGTT (+): 2361555)
Sox5 (Sequence: ATTGTT (+): 2365327)
Sox5 (Sequence: ATTGTT (+): 2365345)
Sox5 (Sequence: ATTGTT (+): 2369138)
Sox5 (Sequence: ATTGTT (+): 2369663)
Sox5 (Sequence: ATTGTT (+): 2371312)
Sox5 (Sequence: ATTGTT (+): 2372341)
Sox5 (Sequence: ATTGTT (+): 2372404)
Sox5 (Sequence: ATTGTT (+): 2372486)
FOXO1 (Sequence: AAAAACAAC (-): 2361095)
FOXO1 (Sequence: AAAAACAAC (-): 2369815)
FOXO1 (Sequence: GAAAACAAC (-): 2372522)
Nobox (Sequence: AGTAATTA (-): 2356815)
Mybl1_1 (Sequence: AACCGTTA (+): 2362192)
Mybl1_1 (Sequence: AACCGTTA (+): 2369022)
Mybl1_1 (Sequence: AACCGTTA (+): 2370231)
POU2F1 (Sequence: ATTAAAATA (-): 2358635)
POU2F1 (Sequence: ATTTAAATA (-): 2361276)
POU2F1 (Sequence: ATTAGCATA (-): 2369652)
SOX9 (Sequence: TTATTGTT (+): 2371310)
POU5F1 (Sequence: TTTGCAT (-): 2356197)
POU5F1 (Sequence: TTTGCAT (-): 2365371)
POU5F1 (Sequence: TTTGCAT (-): 2372669)
Mybl1_1 (Sequence: TAACGGTT (-): 2371742)
RFX4_1 (Sequence: CTTGGCAAC (+): 2367211)
RHOXF1 (Sequence: TGAGCC (+): 2355757)
RHOXF1 (Sequence: TGATCT (+): 2356736)
RHOXF1 (Sequence: TAAGCC (+): 2356841)
RHOXF1 (Sequence: TGATCT (+): 2356904)
RHOXF1 (Sequence: TAATCC (+): 2357003)
RHOXF1 (Sequence: TGATCT (+): 2357087)
RHOXF1 (Sequence: TGATCT (+): 2359088)
RHOXF1 (Sequence: TGATCT (+): 2359519)
RHOXF1 (Sequence: TAAGCC (+): 2360811)
RHOXF1 (Sequence: TAATCC (+): 2361308)
RHOXF1 (Sequence: TGATCT (+): 2362352)
RHOXF1 (Sequence: TGAGCT (+): 2362873)
RHOXF1 (Sequence: TAAGCT (+): 2363620)
RHOXF1 (Sequence: TGATCC (+): 2363792)
RHOXF1 (Sequence: TAATCC (+): 2365433)
RHOXF1 (Sequence: TGATCC (+): 2366448)
RHOXF1 (Sequence: TAAGCT (+): 2366537)
RHOXF1 (Sequence: TAATCT (+): 2366544)
RHOXF1 (Sequence: TGATCT (+): 2367138)
RHOXF1 (Sequence: TAATCC (+): 2367835)
RHOXF1 (Sequence: TGATCT (+): 2368216)
RHOXF1 (Sequence: TGATCC (+): 2368519)
RHOXF1 (Sequence: TAAGCT (+): 2368526)
RHOXF1 (Sequence: TAAGCT (+): 2369058)
RHOXF1 (Sequence: TAAGCT (+): 2369340)
RHOXF1 (Sequence: TGATCC (+): 2369887)
RHOXF1 (Sequence: TGATCT (+): 2369913)
RHOXF1 (Sequence: TGAGCT (+): 2370959)
RHOXF1 (Sequence: TGAGCC (+): 2371964)
RHOXF1 (Sequence: TGAGCT (+): 2372308)
Rhox11 (Sequence: AATACACCA (-): 2356788)
Rhox11 (Sequence: TTTACACCA (-): 2369298)
RFX4_2 (Sequence: GTATCCACG (-): 2361416)
RFX4_2 (Sequence: GTAACTAAG (-): 2364841)
RFX4_2 (Sequence: GTATCCAGG (-): 2370804)
Gata4 (Sequence: AGATAAG (-): 2362547)
Gata4 (Sequence: AGATAAC (-): 2364891)
Gata4 (Sequence: AGATAAC (-): 2367717)
Gata4 (Sequence: CTTATCT (+): 2358970)
Gata4 (Sequence: CTTATCT (+): 2362893)
Sox5 (Sequence: AACAAT (-): 2356061)
Sox5 (Sequence: AACAAT (-): 2357354)
Sox5 (Sequence: AACAAT (-): 2359583)
Sox5 (Sequence: AACAAT (-): 2361284)
Sox5 (Sequence: AACAAT (-): 2363540)
Sox5 (Sequence: AACAAT (-): 2365341)
Sox5 (Sequence: AACAAT (-): 2366311)
Sox5 (Sequence: AACAAT (-): 2368611)
Sox5 (Sequence: AACAAT (-): 2371483)
Sox5 (Sequence: AACAAT (-): 2372120)