Predicted piRNA cluster no. 116     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
12780222
12797147
Gene Set
RepeatMasker
Mapped
Reads
156.79
plus strand
minus strand
156.79
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00001265) Tr:4: 12778603-12781400 (+)
2. unknown (unknowndsub_v4_00001266) Tr:4: 12782147-12782481 (+)
3. unknown (unknowndsub_v4_00001266) Tr:4: 12794603-12794612 (+)
4. unknown (unknowndsub_v4_00001267) Tr:4: 12794559-12795805 (-)
5. unknown (unknowndsub_v4_00001267) Tr:4: 12795869-12796271 (-)
6. unknown (unknowndsub_v4_00001267) Tr:4 UTR: 12794559-12794699 (-)

RepeatMasker Annotation
1. TE-626_Dsub: 12785156-12785248 (-), Divergence to consensus: 18.3%
2. TE-83_Dsub: 12785306-12785358 (+), Divergence to consensus: 18.9%
3. TE-393_Dsub: 12785317-12785885 (-), Divergence to consensus: 29.4%
4. P-2_Dsub: 12788175-12788266 (+), Divergence to consensus: 27.4%
5. TE-626_Dsub: 12788276-12788360 (-), Divergence to consensus: 22.4%
6. TE-601_Dsub: 12788418-12788824 (+), Divergence to consensus: 34.9%
7. TE-393_Dsub: 12788468-12789028 (-), Divergence to consensus: 32.3%
8. TE-435_Dsub: 12791238-12791278 (-), Divergence to consensus: 7.3%
9. P-1_Dsub: 12791246-12791356 (+), Divergence to consensus: 14.4%
10. TE-198_Dsub: 12791279-12791373 (+), Divergence to consensus: 37.8%
11. TE-626_Dsub: 12791368-12791452 (-), Divergence to consensus: 20%
12. TE-582_Dsub: 12791481-12791518 (+), Divergence to consensus: 20.2%
13. TE-572_Dsub: 12791519-12791632 (-), Divergence to consensus: 8.1%
14. TE-582_Dsub: 12791633-12791647 (+), Divergence to consensus: 20.2%
15. TE-640_Dsub: 12791648-12791762 (+), Divergence to consensus: 15.1%
16. TE-358_Dsub: 12791664-12791789 (+), Divergence to consensus: 23.9%
17. TE-607_Dsub: 12791763-12791777 (+), Divergence to consensus: 13%
18. TE-622_Dsub: 12791778-12791836 (-), Divergence to consensus: 18.9%
19. TE-597_Dsub: 12791796-12791880 (-), Divergence to consensus: 32.4%
20. TE-607_Dsub: 12791837-12791850 (+), Divergence to consensus: 13%
21. TE-626_Dsub: 12794144-12794319 (-), Divergence to consensus: 28.9%
22. TE-231_Dsub: 12794306-12794333 (-), Divergence to consensus: 41.1%
23. P-2_Dsub: 12794334-12794436 (+), Divergence to consensus: 38%
24. TE-630_Dsub: 12796517-12796732 (+), Divergence to consensus: 35.8%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGG (-): 12782609)
FOXP1 (Sequence: TGTTTAC (-): 12785249)
FOXP1 (Sequence: TGTTTAC (-): 12788361)
FOXP1 (Sequence: TGTTTAC (-): 12791453)
FOXP1 (Sequence: TGTTTAC (-): 12794237)
Lhx8 (Sequence: TTAATTAA (-): 12782659)
Rhox11 (Sequence: TGCTGTTTT (+): 12788348)
Rhox11 (Sequence: TGCTGTTTT (+): 12791440)
Rhox11 (Sequence: TGCTGTTTT (+): 12794224)
FOXP1 (Sequence: GTAAACA (+): 12782603)
FOXO1 (Sequence: CTTGTTTTT (+): 12781955)
FOXO1 (Sequence: CTTGTTTTT (+): 12794718)
FOXO3_mmu (Sequence: TGTTTAGC (-): 12782651)
FOXO3_mmu (Sequence: TGTTTAGC (-): 12783747)
FOXO3_mmu (Sequence: TGTTTTGC (-): 12785164)
FOXO3_mmu (Sequence: TGTTTAGC (-): 12785541)
FOXO3_mmu (Sequence: TGTTTAGC (-): 12786815)
FOXO3_mmu (Sequence: TGTTTAGC (-): 12789891)
FOXO3_mmu (Sequence: TGTTTAGC (-): 12790919)
FOXO3_mmu (Sequence: TGTTTTGC (-): 12791368)
FOXO3_mmu (Sequence: TGTTTAGC (-): 12792743)
FOXO3_mmu (Sequence: TGTTTTGC (-): 12794152)
RHOXF1 (Sequence: AGCTCA (-): 12780448)
RHOXF1 (Sequence: GGATCA (-): 12780838)
RHOXF1 (Sequence: AGCTTA (-): 12782656)
RHOXF1 (Sequence: AGCTCA (-): 12783499)
RHOXF1 (Sequence: GGCTTA (-): 12783810)
RHOXF1 (Sequence: GGCTCA (-): 12784247)
RHOXF1 (Sequence: AGCTTA (-): 12784325)
RHOXF1 (Sequence: AGCTTA (-): 12784774)
RHOXF1 (Sequence: GGCTCA (-): 12785073)
RHOXF1 (Sequence: GGATCA (-): 12786205)
RHOXF1 (Sequence: AGCTCA (-): 12786567)
RHOXF1 (Sequence: GGCTTA (-): 12786878)
RHOXF1 (Sequence: GGCTCA (-): 12787315)
RHOXF1 (Sequence: AGCTTA (-): 12787393)
RHOXF1 (Sequence: AGCTTA (-): 12787842)
RHOXF1 (Sequence: GGATCA (-): 12789305)
RHOXF1 (Sequence: AGCTCA (-): 12789643)
RHOXF1 (Sequence: GGCTTA (-): 12789954)
RHOXF1 (Sequence: GGCTCA (-): 12790391)
RHOXF1 (Sequence: AGCTTA (-): 12790469)
RHOXF1 (Sequence: AGCTTA (-): 12790924)
RHOXF1 (Sequence: GGATCA (-): 12792157)
RHOXF1 (Sequence: AGCTCA (-): 12792495)
RHOXF1 (Sequence: GGCTTA (-): 12792806)
RHOXF1 (Sequence: GGCTCA (-): 12793243)
RHOXF1 (Sequence: AGCTTA (-): 12793321)
RHOXF1 (Sequence: AGCTTA (-): 12793770)
RHOXF1 (Sequence: AGATCA (-): 12795155)
RHOXF1 (Sequence: AGCTCA (-): 12795412)
FOXO3_mmu (Sequence: TGTAAACA (+): 12782602)
FOXO3_mmu (Sequence: TGAAAACA (+): 12783176)
FOXO3_mmu (Sequence: GCAAAACA (+): 12785509)
FOXO3_mmu (Sequence: GCAAAACA (+): 12788621)
FOXO3_mmu (Sequence: TCTAAACA (+): 12793987)
Sox5 (Sequence: ATTGTT (+): 12782649)
Sox5 (Sequence: ATTGTT (+): 12782780)
Sox5 (Sequence: ATTGTT (+): 12783045)
Sox5 (Sequence: ATTGTT (+): 12783207)
Sox5 (Sequence: ATTGTT (+): 12783437)
Sox5 (Sequence: ATTGTT (+): 12785162)
Sox5 (Sequence: ATTGTT (+): 12785395)
Sox5 (Sequence: ATTGTT (+): 12785432)
Sox5 (Sequence: ATTGTT (+): 12785787)
Sox5 (Sequence: ATTGTT (+): 12786505)
Sox5 (Sequence: ATTGTT (+): 12788274)
Sox5 (Sequence: ATTGTT (+): 12788507)
Sox5 (Sequence: ATTGTT (+): 12788544)
Sox5 (Sequence: ATTGTT (+): 12788930)
Sox5 (Sequence: ATTGTT (+): 12789581)
Sox5 (Sequence: ATTGTT (+): 12791366)
Sox5 (Sequence: ATTGTT (+): 12791599)
Sox5 (Sequence: ATTGTT (+): 12791636)
Sox5 (Sequence: ATTGTT (+): 12792433)
Sox5 (Sequence: ATTGTT (+): 12794150)
Sox5 (Sequence: ATTGTT (+): 12794520)
Sox5 (Sequence: ATTGTT (+): 12794583)
Sox5 (Sequence: ATTGTT (+): 12796409)
FOXO1 (Sequence: GTAAACAAC (-): 12782603)
POU2F1 (Sequence: ATTTAAATA (-): 12781457)
SOX9 (Sequence: TTATTGTT (+): 12785393)
SOX9 (Sequence: TTATTGTT (+): 12788505)
SOX9 (Sequence: TTATTGTT (+): 12791597)
SOX9 (Sequence: TTATTGTT (+): 12794518)
POU5F1 (Sequence: TTTGCAT (-): 12796630)
RHOXF1 (Sequence: TGAGCC (+): 12780275)
RHOXF1 (Sequence: TGAGCC (+): 12780278)
RHOXF1 (Sequence: TGATCC (+): 12780670)
RHOXF1 (Sequence: TGATCT (+): 12781127)
RHOXF1 (Sequence: TAAGCT (+): 12781450)
RHOXF1 (Sequence: TAATCT (+): 12782179)
RHOXF1 (Sequence: TGATCT (+): 12782320)
RHOXF1 (Sequence: TAATCT (+): 12782802)
RHOXF1 (Sequence: TAATCT (+): 12783505)
RHOXF1 (Sequence: TGAGCC (+): 12784267)
RHOXF1 (Sequence: TAAGCT (+): 12785522)
RHOXF1 (Sequence: TGATCC (+): 12785586)
RHOXF1 (Sequence: TGATCC (+): 12785596)
RHOXF1 (Sequence: TGATCT (+): 12785610)
RHOXF1 (Sequence: TAATCT (+): 12786573)
RHOXF1 (Sequence: TGAGCC (+): 12787335)
RHOXF1 (Sequence: TAAGCT (+): 12788634)
RHOXF1 (Sequence: TGATCC (+): 12788698)
RHOXF1 (Sequence: TGATCC (+): 12788708)
RHOXF1 (Sequence: TGATCT (+): 12788722)
RHOXF1 (Sequence: TAATCT (+): 12789649)
RHOXF1 (Sequence: TGAGCC (+): 12790411)
RHOXF1 (Sequence: TAATCC (+): 12790778)
RHOXF1 (Sequence: TGATCC (+): 12791728)
RHOXF1 (Sequence: TGATCC (+): 12791738)
RHOXF1 (Sequence: TGATCT (+): 12791752)
RHOXF1 (Sequence: TAATCT (+): 12792501)
RHOXF1 (Sequence: TGAGCC (+): 12793263)
RHOXF1 (Sequence: TAATCT (+): 12793806)
RHOXF1 (Sequence: TAATCT (+): 12794555)
RHOXF1 (Sequence: TAAGCT (+): 12794669)
RHOXF1 (Sequence: TGAGCC (+): 12794817)
RHOXF1 (Sequence: TAAGCC (+): 12794993)
RHOXF1 (Sequence: TGATCC (+): 12794998)
RHOXF1 (Sequence: TGATCC (+): 12795046)
RHOXF1 (Sequence: TGATCT (+): 12796945)
Rhox11 (Sequence: ATAACACCA (-): 12782214)
FOXO3_hsa (Sequence: GTAAACAA (+): 12782603)
Gata4 (Sequence: AGATAAG (-): 12795281)
FOXO3_hsa (Sequence: TTGTTTAC (-): 12785248)
FOXO3_hsa (Sequence: TTGTTTAC (-): 12788360)
FOXO3_hsa (Sequence: TTGTTTAC (-): 12791452)
FOXO3_hsa (Sequence: TTGTTTAC (-): 12794236)
Sox5 (Sequence: AACAAT (-): 12782609)
Sox5 (Sequence: AACAAT (-): 12783087)
Sox5 (Sequence: AACAAT (-): 12783164)
Sox5 (Sequence: AACAAT (-): 12783180)
Sox5 (Sequence: AACAAT (-): 12783197)
Sox5 (Sequence: AACAAT (-): 12783350)
Sox5 (Sequence: AACAAT (-): 12786233)
Sox5 (Sequence: AACAAT (-): 12786418)
Sox5 (Sequence: AACAAT (-): 12789333)
Sox5 (Sequence: AACAAT (-): 12789494)
Sox5 (Sequence: AACAAT (-): 12792185)
Sox5 (Sequence: AACAAT (-): 12792346)
Sox5 (Sequence: AACAAT (-): 12793812)
Sox5 (Sequence: AACAAT (-): 12795597)
Sox5 (Sequence: AACAAT (-): 12797048)