Predicted piRNA cluster no. 108     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
3607388
3613082
Gene Set
RepeatMasker
Mapped
Reads
49.09
plus strand
minus strand
49.09
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00000324) Tr:4: 3610363-3611025 (+)
2. unknown (unknowndsub_v4_00000324) Tr:4: 3612763-3612918 (+)

RepeatMasker Annotation
1. TE-437_Dsub: 3607892-3608251 (+), Divergence to consensus: 0.8%
2. GYPSY-11_Dsub: 3608252-3611080 (+), Divergence to consensus: 0.6%
3. GYPSY-11_Dsub: 3611065-3612259 (+), Divergence to consensus: 0.4%
4. TE-437_Dsub: 3612263-3612626 (+), Divergence to consensus: 0.6%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGG (-): 3610840)
POU5F1 (Sequence: ATGCAAA (+): 3608587)
FOXO3_mmu (Sequence: TGTTTTCA (-): 3608178)
FOXO3_mmu (Sequence: TGTTTAGA (-): 3611135)
FOXO3_mmu (Sequence: TGTTTTCA (-): 3612549)
RHOXF1 (Sequence: AGATTA (-): 3609806)
RHOXF1 (Sequence: AGATTA (-): 3609958)
RHOXF1 (Sequence: AGCTTA (-): 3611595)
RHOXF1 (Sequence: GGATCA (-): 3611860)
RHOXF1 (Sequence: AGCTCA (-): 3612243)
RHOXF1 (Sequence: GGATTA (-): 3612686)
RFX4_1 (Sequence: GTTGCTAAG (-): 3610325)
FOXO1 (Sequence: AAAAACAGG (-): 3611983)
FOXO1 (Sequence: AAAAACAGG (-): 3612679)
Nobox (Sequence: GGCAATTA (-): 3608506)
Nobox (Sequence: AGCAATTA (-): 3610877)
RHOXF1 (Sequence: TGAGCC (+): 3607825)
RHOXF1 (Sequence: TAATCC (+): 3609035)
RHOXF1 (Sequence: TAATCC (+): 3611348)
RHOXF1 (Sequence: TAAGCC (+): 3611498)
Rhox11 (Sequence: AAAACACCG (-): 3608973)
Gata4 (Sequence: AGATAAG (-): 3610184)
Sox5 (Sequence: AACAAT (-): 3608479)
Sox5 (Sequence: AACAAT (-): 3608484)
Sox5 (Sequence: AACAAT (-): 3610410)
Sox5 (Sequence: AACAAT (-): 3610840)
Sox5 (Sequence: AACAAT (-): 3610864)
Sox5 (Sequence: AACAAT (-): 3610972)
Sox5 (Sequence: AACAAT (-): 3612724)