Predicted piRNA cluster no. 136     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
1477075
1484007
Gene Set
RepeatMasker
Mapped
Reads
5.99
plus strand
minus strand
5.99
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-561_Dsub: 1477021-1477311 (+), Divergence to consensus: 27.3%
2. TE-623_Dsub: 1477312-1477504 (-), Divergence to consensus: 39.6%
3. TE-561_Dsub: 1477505-1477531 (+), Divergence to consensus: 27.3%
4. TE-330_Dsub: 1478737-1478779 (+), Divergence to consensus: 13.9%
5. TE-274_Dsub: 1478752-1478826 (+), Divergence to consensus: 28.1%
6. TE-20_Dsub: 1478755-1478862 (-), Divergence to consensus: 39%
7. TE-516_Dsub: 1478780-1478826 (-), Divergence to consensus: 29.1%
8. BILBO-1_Dsub: 1478874-1479298 (-), Divergence to consensus: 27.9%
9. BILBO-1_Dsub: 1479316-1479506 (-), Divergence to consensus: 27.2%
10. BILBO-1_Dsub: 1479519-1479732 (-), Divergence to consensus: 24.9%
11. CR1-4_Dsub: 1479728-1482880 (+), Divergence to consensus: 5.4%
12. BILBO-1_Dsub: 1482898-1483306 (-), Divergence to consensus: 51%
13. BILBO-1_Dsub: 1483315-1483505 (-), Divergence to consensus: 15.4%
14. TE-566_Dsub: 1483521-1483569 (-), Divergence to consensus: 16.3%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 1481031)
FOXP1 (Sequence: TGTTTAC (-): 1479952)
Lhx8 (Sequence: TTAATTAA (-): 1480623)
Lhx8 (Sequence: TTAATTAG (-): 1483731)
Rhox11 (Sequence: TGGTGTAAT (+): 1482372)
Rhox11 (Sequence: TGCTGTATT (+): 1483434)
FOXP1 (Sequence: GTAAACA (+): 1480968)
POU5F1 (Sequence: ATGCAAA (+): 1477472)
FOXO3_mmu (Sequence: TGTTTAGC (-): 1478421)
FOXO3_mmu (Sequence: TGTTTACC (-): 1479952)
POU2F1 (Sequence: TATTTAAAT (+): 1478310)
POU2F1 (Sequence: TATGTAAAT (+): 1482494)
Nobox (Sequence: TAATTGGT (+): 1479543)
Nobox (Sequence: TAATTACT (+): 1480853)
Nobox (Sequence: TAATTAGC (+): 1483732)
Nobox (Sequence: TAATTGCC (+): 1483853)
RHOXF1 (Sequence: AGATCA (-): 1477322)
RHOXF1 (Sequence: AGATTA (-): 1477336)
RHOXF1 (Sequence: GGATTA (-): 1477346)
RHOXF1 (Sequence: AGCTTA (-): 1478441)
RHOXF1 (Sequence: AGCTCA (-): 1479252)
RHOXF1 (Sequence: GGCTTA (-): 1479888)
RHOXF1 (Sequence: GGCTTA (-): 1480368)
RHOXF1 (Sequence: AGCTCA (-): 1480612)
RHOXF1 (Sequence: GGCTCA (-): 1482190)
RHOXF1 (Sequence: GGATTA (-): 1482543)
RHOXF1 (Sequence: GGATCA (-): 1483054)
RHOXF1 (Sequence: GGCTTA (-): 1483260)
RHOXF1 (Sequence: AGCTTA (-): 1483725)
FOXO3_mmu (Sequence: TCTAAACA (+): 1477652)
FOXO3_mmu (Sequence: GCTAAACA (+): 1477809)
FOXO3_mmu (Sequence: GCAAAACA (+): 1478292)
FOXO3_mmu (Sequence: TGTAAACA (+): 1480967)
RFX4_1 (Sequence: GTTGCCATG (-): 1477867)
Sox5 (Sequence: ATTGTT (+): 1479394)
Sox5 (Sequence: ATTGTT (+): 1479487)
FOXO1 (Sequence: GAAAACAAC (-): 1478000)
POU2F1 (Sequence: ATTTAAATA (-): 1478311)
SOX9 (Sequence: CCATTGTT (+): 1479485)
POU5F1 (Sequence: TTTGCAT (-): 1479245)
RHOXF1 (Sequence: TGATCT (+): 1477384)
RHOXF1 (Sequence: TGAGCT (+): 1477968)
RHOXF1 (Sequence: TGAGCC (+): 1478119)
RHOXF1 (Sequence: TAAGCC (+): 1478675)
RHOXF1 (Sequence: TGAGCC (+): 1479054)
RHOXF1 (Sequence: TGATCT (+): 1480430)
RHOXF1 (Sequence: TAATCT (+): 1481469)
RHOXF1 (Sequence: TAAGCT (+): 1481817)
RHOXF1 (Sequence: TGATCT (+): 1482018)
RHOXF1 (Sequence: TGAGCT (+): 1483723)
Gata4 (Sequence: GTTATCT (+): 1479686)
Gata4 (Sequence: CTTATCT (+): 1481682)
Sox5 (Sequence: AACAAT (-): 1481031)