Predicted piRNA cluster no. 23     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrA_v4 
14905050
14921687
Gene Set
RepeatMasker
Mapped
Reads
76.7
plus strand
minus strand
76.7
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-627_Dsub: 14908501-14908583 (-), Divergence to consensus: 0%
2. TE-627_Dsub: 14908580-14910713 (-), Divergence to consensus: 5.2%
3. JOCKEY-2_Dsub: 14910691-14910760 (-), Divergence to consensus: 5.7%
4. TE-627_Dsub: 14910714-14911054 (-), Divergence to consensus: 0.3%
5. JOCKEY-2_Dsub: 14911032-14911101 (-), Divergence to consensus: 5.7%
6. TE-627_Dsub: 14911055-14911395 (-), Divergence to consensus: 0%
7. JOCKEY-2_Dsub: 14911373-14911442 (-), Divergence to consensus: 5.7%
8. TE-627_Dsub: 14911396-14911681 (-), Divergence to consensus: 16.1%
9. TE-627_Dsub: 14911680-14912026 (-), Divergence to consensus: 0.6%
10. JOCKEY-2_Dsub: 14912004-14912073 (-), Divergence to consensus: 5.7%
11. TE-627_Dsub: 14912027-14912367 (-), Divergence to consensus: 0.3%
12. JOCKEY-2_Dsub: 14912345-14912414 (-), Divergence to consensus: 5.7%
13. TE-627_Dsub: 14912368-14912708 (-), Divergence to consensus: 0.3%
14. JOCKEY-2_Dsub: 14912686-14912755 (-), Divergence to consensus: 5.7%
15. TE-627_Dsub: 14912709-14913049 (-), Divergence to consensus: 0%
16. JOCKEY-2_Dsub: 14913027-14913096 (-), Divergence to consensus: 5.7%
17. TE-627_Dsub: 14913050-14914168 (-), Divergence to consensus: 4.8%
18. TE-627_Dsub: 14914201-14914577 (-), Divergence to consensus: 2.9%
19. TE-627_Dsub: 14914579-14914934 (-), Divergence to consensus: 0.3%
20. JOCKEY-2_Dsub: 14914912-14914981 (-), Divergence to consensus: 5.7%
21. TE-627_Dsub: 14914935-14915301 (-), Divergence to consensus: 2.7%
22. TE-627_Dsub: 14915308-14915684 (-), Divergence to consensus: 2.6%
23. TE-627_Dsub: 14915691-14916067 (-), Divergence to consensus: 2.4%
24. TE-627_Dsub: 14916074-14917367 (-), Divergence to consensus: 4.6%
25. TE-579_Dsub: 14920413-14921610 (+), Divergence to consensus: 0%

Transcription Factor Binding Sites
FIGLA (Sequence: AACAGCTGTT (-): 14920563)
Lhx8 (Sequence: CTAATTAA (-): 14908307)
Lhx8 (Sequence: TTAATTAA (-): 14921571)
Rhox11 (Sequence: TGCTGTAAT (+): 14918358)
Rhox11 (Sequence: CGCTGTAAT (+): 14919487)
FOXO1 (Sequence: CTTGTTTTT (+): 14917692)
FOXO1 (Sequence: CCTGTTTTT (+): 14917695)
POU5F1 (Sequence: ATGCAAA (+): 14905073)
POU5F1 (Sequence: ATGCAAA (+): 14906287)
Nobox (Sequence: TAATTACT (+): 14917237)
RHOXF1 (Sequence: GGCTTA (-): 14905309)
RHOXF1 (Sequence: GGCTTA (-): 14905862)
RHOXF1 (Sequence: GGCTCA (-): 14908993)
RHOXF1 (Sequence: GGCTCA (-): 14909771)
RHOXF1 (Sequence: GGCTCA (-): 14910549)
RHOXF1 (Sequence: GGCTCA (-): 14910890)
RHOXF1 (Sequence: GGCTCA (-): 14911231)
RHOXF1 (Sequence: GGCTCA (-): 14911534)
RHOXF1 (Sequence: GGCTCA (-): 14911862)
RHOXF1 (Sequence: GGCTCA (-): 14912203)
RHOXF1 (Sequence: GGCTCA (-): 14912544)
RHOXF1 (Sequence: GGCTCA (-): 14912885)
RHOXF1 (Sequence: GGCTCA (-): 14913226)
RHOXF1 (Sequence: GGCTCA (-): 14914004)
RHOXF1 (Sequence: GGCTCA (-): 14914387)
RHOXF1 (Sequence: GGCTCA (-): 14914770)
RHOXF1 (Sequence: GGCTCA (-): 14915111)
RHOXF1 (Sequence: GGCTCA (-): 14915494)
RHOXF1 (Sequence: GGCTCA (-): 14915877)
RHOXF1 (Sequence: GGCTCA (-): 14916260)
RHOXF1 (Sequence: GGCTCA (-): 14917038)
RHOXF1 (Sequence: AGCTCA (-): 14917412)
RHOXF1 (Sequence: GGCTCA (-): 14917601)
RHOXF1 (Sequence: AGCTCA (-): 14918392)
RHOXF1 (Sequence: GGATCA (-): 14921182)
RHOXF1 (Sequence: AGATTA (-): 14921183)
Sox5 (Sequence: ATTGTT (+): 14909281)
Sox5 (Sequence: ATTGTT (+): 14910059)
Sox5 (Sequence: ATTGTT (+): 14913514)
Sox5 (Sequence: ATTGTT (+): 14916548)
Sox5 (Sequence: ATTGTT (+): 14917326)
Sox5 (Sequence: ATTGTT (+): 14920320)
FOXO1 (Sequence: ATAAACAGG (-): 14907701)
FOXO1 (Sequence: AAAAACAGG (-): 14908022)
Nobox (Sequence: GGTAATTA (-): 14906365)
Nobox (Sequence: GCTAATTA (-): 14908306)
POU5F1 (Sequence: TTTGCAT (-): 14906092)
POU5F1 (Sequence: TTTGCAT (-): 14921027)
RHOXF1 (Sequence: TGAGCC (+): 14906135)
RHOXF1 (Sequence: TGAGCC (+): 14906147)
RHOXF1 (Sequence: TAAGCT (+): 14906956)
RHOXF1 (Sequence: TGATCT (+): 14907511)
RHOXF1 (Sequence: TAAGCT (+): 14908571)
RHOXF1 (Sequence: TAAGCT (+): 14908679)
RHOXF1 (Sequence: TGATCT (+): 14908713)
RHOXF1 (Sequence: TGATCC (+): 14908871)
RHOXF1 (Sequence: TGAGCT (+): 14908924)
RHOXF1 (Sequence: TAATCT (+): 14909003)
RHOXF1 (Sequence: TAAGCT (+): 14909457)
RHOXF1 (Sequence: TGATCT (+): 14909491)
RHOXF1 (Sequence: TGATCC (+): 14909649)
RHOXF1 (Sequence: TGAGCT (+): 14909702)
RHOXF1 (Sequence: TAATCT (+): 14909781)
RHOXF1 (Sequence: TAAGCT (+): 14910235)
RHOXF1 (Sequence: TGATCT (+): 14910269)
RHOXF1 (Sequence: TGATCC (+): 14910427)
RHOXF1 (Sequence: TGAGCT (+): 14910480)
RHOXF1 (Sequence: TAATCT (+): 14910559)
RHOXF1 (Sequence: TGATCC (+): 14910768)
RHOXF1 (Sequence: TGAGCT (+): 14910821)
RHOXF1 (Sequence: TAATCT (+): 14910900)
RHOXF1 (Sequence: TGATCC (+): 14911109)
RHOXF1 (Sequence: TGAGCT (+): 14911162)
RHOXF1 (Sequence: TAATCT (+): 14911241)
RHOXF1 (Sequence: TGATCC (+): 14911450)
RHOXF1 (Sequence: TGAGCT (+): 14911503)
RHOXF1 (Sequence: TAATCT (+): 14911544)
RHOXF1 (Sequence: TGATCC (+): 14911740)
RHOXF1 (Sequence: TGAGCT (+): 14911793)
RHOXF1 (Sequence: TAATCT (+): 14911872)
RHOXF1 (Sequence: TGATCC (+): 14912081)
RHOXF1 (Sequence: TGAGCT (+): 14912134)
RHOXF1 (Sequence: TAATCT (+): 14912213)
RHOXF1 (Sequence: TGATCC (+): 14912422)
RHOXF1 (Sequence: TGAGCT (+): 14912475)
RHOXF1 (Sequence: TAATCT (+): 14912554)
RHOXF1 (Sequence: TGATCC (+): 14912763)
RHOXF1 (Sequence: TGAGCT (+): 14912816)
RHOXF1 (Sequence: TAATCT (+): 14912895)
RHOXF1 (Sequence: TGATCC (+): 14913104)
RHOXF1 (Sequence: TGAGCT (+): 14913157)
RHOXF1 (Sequence: TAATCT (+): 14913236)
RHOXF1 (Sequence: TAAGCT (+): 14913690)
RHOXF1 (Sequence: TGATCT (+): 14913724)
RHOXF1 (Sequence: TGATCC (+): 14913882)
RHOXF1 (Sequence: TGAGCT (+): 14913935)
RHOXF1 (Sequence: TAATCT (+): 14914014)
RHOXF1 (Sequence: TGATCC (+): 14914265)
RHOXF1 (Sequence: TGAGCT (+): 14914318)
RHOXF1 (Sequence: TAATCT (+): 14914397)
RHOXF1 (Sequence: TGATCC (+): 14914648)
RHOXF1 (Sequence: TGAGCT (+): 14914701)
RHOXF1 (Sequence: TAATCT (+): 14914780)
RHOXF1 (Sequence: TGATCC (+): 14914989)
RHOXF1 (Sequence: TGAGCT (+): 14915042)
RHOXF1 (Sequence: TAATCT (+): 14915121)
RHOXF1 (Sequence: TGATCC (+): 14915372)
RHOXF1 (Sequence: TGAGCT (+): 14915425)
RHOXF1 (Sequence: TAATCT (+): 14915504)
RHOXF1 (Sequence: TGATCC (+): 14915755)
RHOXF1 (Sequence: TGAGCT (+): 14915808)
RHOXF1 (Sequence: TAATCT (+): 14915887)
RHOXF1 (Sequence: TGATCC (+): 14916138)
RHOXF1 (Sequence: TGAGCT (+): 14916191)
RHOXF1 (Sequence: TAATCT (+): 14916270)
RHOXF1 (Sequence: TAAGCT (+): 14916724)
RHOXF1 (Sequence: TGATCT (+): 14916758)
RHOXF1 (Sequence: TGATCC (+): 14916916)
RHOXF1 (Sequence: TGAGCT (+): 14916969)
RHOXF1 (Sequence: TAATCT (+): 14917048)
RHOXF1 (Sequence: TGAGCC (+): 14919409)
RHOXF1 (Sequence: TAATCC (+): 14920881)
Gata4 (Sequence: AGATAAC (-): 14920559)
Sox5 (Sequence: AACAAT (-): 14906220)
Sox5 (Sequence: AACAAT (-): 14906941)
Sox5 (Sequence: AACAAT (-): 14920593)
Sox5 (Sequence: AACAAT (-): 14921133)