Predicted piRNA cluster no. 58     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
98068
122755
Gene Set
RepeatMasker
Mapped
Reads
1023.44
plus strand
minus strand
1023.44
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-420_Dsub: 97123-99038 (-), Divergence to consensus: 6.4%
2. TE-621_Dsub: 99039-100602 (-), Divergence to consensus: 4.4%
3. TE-542_Dsub: 100596-100752 (+), Divergence to consensus: 19.8%
4. TE-32_Dsub: 100605-100783 (-), Divergence to consensus: 28.7%
5. TE-456_Dsub: 100816-100977 (+), Divergence to consensus: 3.1%
6. TE-604_Dsub: 101378-101429 (+), Divergence to consensus: 21.4%
7. TE-585_Dsub: 101403-101635 (+), Divergence to consensus: 2.1%
8. GYPSY-17_Dsub: 101636-106363 (+), Divergence to consensus: 0.1%
9. TE-585_Dsub: 106364-106596 (+), Divergence to consensus: 1.7%
10. TE-596_Dsub: 106597-106716 (+), Divergence to consensus: 22.6%
11. TE-358_Dsub: 106717-106734 (-), Divergence to consensus: 28.3%
12. TE-617_Dsub: 107348-107451 (-), Divergence to consensus: 27.9%
13. TE-556_Dsub: 107400-107449 (+), Divergence to consensus: 23.6%
14. TABOR-1_Dsub: 107450-107541 (-), Divergence to consensus: 7.6%
15. TE-640_Dsub: 107550-108014 (-), Divergence to consensus: 30.6%
16. TE-640_Dsub: 108010-108330 (-), Divergence to consensus: 7.3%
17. TE-596_Dsub: 108193-108575 (+), Divergence to consensus: 20.8%
18. TE-622_Dsub: 108340-108648 (-), Divergence to consensus: 19.2%
19. TE-322_Dsub: 108636-108716 (+), Divergence to consensus: 27.2%
20. TE-582_Dsub: 109122-109336 (-), Divergence to consensus: 35.1%
21. TE-633_Dsub: 109337-109373 (+), Divergence to consensus: 44.1%
22. TE-330_Dsub: 109394-109598 (-), Divergence to consensus: 36.9%
23. TE-542_Dsub: 109749-110108 (+), Divergence to consensus: 8%
24. TE-578_Dsub: 110702-110999 (-), Divergence to consensus: 6%
25. CR1-4_Dsub: 111066-115749 (+), Divergence to consensus: 0.8%
26. TE-578_Dsub: 115746-117127 (-), Divergence to consensus: 14.9%
27. TE-578_Dsub: 117181-117452 (-), Divergence to consensus: 13.6%
28. TE-456_Dsub: 117521-117683 (+), Divergence to consensus: 4.9%
29. TE-578_Dsub: 117667-118057 (-), Divergence to consensus: 26.2%
30. TE-542_Dsub: 118064-118400 (+), Divergence to consensus: 15.1%
31. TE-572_Dsub: 118715-118732 (-), Divergence to consensus: 28.7%
32. TE-582_Dsub: 118733-118875 (+), Divergence to consensus: 35.4%
33. TE-572_Dsub: 118876-119307 (-), Divergence to consensus: 28.7%
34. TE-189_Dsub: 119049-120636 (+), Divergence to consensus: 2.4%
35. TE-595_Dsub: 121371-121836 (+), Divergence to consensus: 11.3%
36. TE-582_Dsub: 122095-122141 (+), Divergence to consensus: 25.3%
37. TE-612_Dsub: 122142-122516 (-), Divergence to consensus: 12.1%
38. TE-267_Dsub: 122451-122527 (-), Divergence to consensus: 19.5%
39. TE-569_Dsub: 122502-122582 (+), Divergence to consensus: 20%
40. TE-291_Dsub: 122503-122513 (-), Divergence to consensus: 30.1%
41. TE-601_Dsub: 122514-122599 (-), Divergence to consensus: 17.4%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 103169)
SOX9 (Sequence: AACAATGA (-): 113818)
RFX4_2 (Sequence: CATGGTTAC (+): 114534)
FOXP1 (Sequence: TGTTTAC (-): 107775)
FOXP1 (Sequence: TGTTTAC (-): 109547)
FOXP1 (Sequence: TGTTTAC (-): 112739)
FOXP1 (Sequence: TGTTTAC (-): 120777)
FIGLA (Sequence: ACCAGGTGGA (-): 105386)
Lhx8 (Sequence: TTAATTAG (-): 101286)
Lhx8 (Sequence: TTAATTAG (-): 113410)
Rhox11 (Sequence: CGCTGTTTT (+): 98463)
Rhox11 (Sequence: CGGTGTAAA (+): 98673)
Rhox11 (Sequence: CGGTGTAAA (+): 98687)
Rhox11 (Sequence: TGCTGTTTT (+): 104146)
Rhox11 (Sequence: CGCTGTATA (+): 105373)
Rhox11 (Sequence: CGGTGTATT (+): 106243)
Rhox11 (Sequence: TGGTGTTAA (+): 114861)
FOXP1 (Sequence: GTAAACA (+): 101334)
FOXP1 (Sequence: GTAAACA (+): 113755)
FOXP1 (Sequence: GTAAACA (+): 121683)
FOXO1 (Sequence: GTTGTTTTC (+): 99139)
FOXO1 (Sequence: GCTGTTTTC (+): 104147)
FOXO1 (Sequence: GTTGTTTAC (+): 107773)
FOXO1 (Sequence: GTTGTTTAT (+): 118503)
POU5F1 (Sequence: ATGCAAA (+): 102341)
POU5F1 (Sequence: ATGCAAA (+): 103164)
POU5F1 (Sequence: ATGCAAA (+): 106757)
POU5F1 (Sequence: ATGCAAA (+): 117166)
FOXO3_mmu (Sequence: TGTTTTCA (-): 99141)
FOXO3_mmu (Sequence: TGTTTTCA (-): 104149)
FOXO3_mmu (Sequence: TGTTTACA (-): 107775)
FOXO3_mmu (Sequence: TGTTTACA (-): 109547)
FOXO3_mmu (Sequence: TGTTTTGC (-): 111093)
FOXO3_mmu (Sequence: TGTTTTGC (-): 111095)
FOXO3_mmu (Sequence: TGTTTAGA (-): 111227)
FOXO3_mmu (Sequence: TGTTTACC (-): 112739)
FOXO3_mmu (Sequence: TGTTTTCC (-): 116766)
FOXO3_mmu (Sequence: TGTTTTCA (-): 119471)
POU2F1 (Sequence: TATGCTAAT (+): 111196)
Nobox (Sequence: TAATTAGT (+): 101287)
Nobox (Sequence: TAATTGGT (+): 104226)
Nobox (Sequence: TAATTGCT (+): 107388)
Nobox (Sequence: TAATTGGC (+): 108773)
Nobox (Sequence: TAATTGCC (+): 111164)
Nobox (Sequence: TAATTACT (+): 113640)
Nobox (Sequence: TAATTGCT (+): 117844)
RHOXF1 (Sequence: AGATTA (-): 98384)
RHOXF1 (Sequence: GGCTTA (-): 98600)
RHOXF1 (Sequence: AGCTCA (-): 98773)
RHOXF1 (Sequence: AGCTTA (-): 99365)
RHOXF1 (Sequence: AGCTTA (-): 99390)
RHOXF1 (Sequence: GGATTA (-): 101647)
RHOXF1 (Sequence: AGATCA (-): 102399)
RHOXF1 (Sequence: GGCTCA (-): 102627)
RHOXF1 (Sequence: AGCTTA (-): 102834)
RHOXF1 (Sequence: AGATCA (-): 102866)
RHOXF1 (Sequence: GGCTCA (-): 103066)
RHOXF1 (Sequence: GGATCA (-): 104702)
RHOXF1 (Sequence: AGCTTA (-): 104890)
RHOXF1 (Sequence: GGATCA (-): 105947)
RHOXF1 (Sequence: AGCTCA (-): 107439)
RHOXF1 (Sequence: AGATCA (-): 107914)
RHOXF1 (Sequence: AGCTTA (-): 108002)
RHOXF1 (Sequence: GGCTCA (-): 108629)
RHOXF1 (Sequence: GGATTA (-): 108756)
RHOXF1 (Sequence: GGATCA (-): 108972)
RHOXF1 (Sequence: GGATCA (-): 109173)
RHOXF1 (Sequence: AGCTTA (-): 110363)
RHOXF1 (Sequence: AGATCA (-): 111655)
RHOXF1 (Sequence: GGCTTA (-): 112365)
RHOXF1 (Sequence: AGATTA (-): 112420)
RHOXF1 (Sequence: GGCTTA (-): 112675)
RHOXF1 (Sequence: GGCTTA (-): 113155)
RHOXF1 (Sequence: AGCTCA (-): 113399)
RHOXF1 (Sequence: AGCTCA (-): 114267)
RHOXF1 (Sequence: GGCTCA (-): 115027)
RHOXF1 (Sequence: GGATTA (-): 115380)
RHOXF1 (Sequence: GGATTA (-): 117205)
RHOXF1 (Sequence: AGATTA (-): 118651)
RHOXF1 (Sequence: AGCTCA (-): 120221)
RHOXF1 (Sequence: AGATTA (-): 120273)
RHOXF1 (Sequence: AGATCA (-): 120612)
RHOXF1 (Sequence: GGCTTA (-): 120626)
RHOXF1 (Sequence: AGATCA (-): 121403)
RHOXF1 (Sequence: AGCTCA (-): 121928)
FOXO3_mmu (Sequence: TGAAAACA (+): 100372)
FOXO3_mmu (Sequence: TGAAAACA (+): 104866)
FOXO3_mmu (Sequence: TCAAAACA (+): 109685)
FOXO3_mmu (Sequence: TGTAAACA (+): 113754)
FOXO3_mmu (Sequence: TGTAAACA (+): 121682)
RFX4_1 (Sequence: GTTGCCAAG (-): 103316)
RFX4_1 (Sequence: GTTGCTATG (-): 105203)
Sox5 (Sequence: ATTGTT (+): 100329)
Sox5 (Sequence: ATTGTT (+): 101148)
Sox5 (Sequence: ATTGTT (+): 101191)
Sox5 (Sequence: ATTGTT (+): 102798)
Sox5 (Sequence: ATTGTT (+): 104946)
Sox5 (Sequence: ATTGTT (+): 107076)
Sox5 (Sequence: ATTGTT (+): 107290)
Sox5 (Sequence: ATTGTT (+): 109741)
Sox5 (Sequence: ATTGTT (+): 109869)
Sox5 (Sequence: ATTGTT (+): 116051)
Sox5 (Sequence: ATTGTT (+): 116764)
Sox5 (Sequence: ATTGTT (+): 118184)
Sox5 (Sequence: ATTGTT (+): 120058)
FOXO1 (Sequence: GAAAACAAC (-): 100373)
FOXO1 (Sequence: GTAAACAGC (-): 101334)
FOXO1 (Sequence: ATAAACAAC (-): 111127)
FOXO1 (Sequence: GAAAACAAG (-): 116753)
FOXO1 (Sequence: ATAAACAAC (-): 117710)
FOXO1 (Sequence: AAAAACAAC (-): 122414)
POU2F1 (Sequence: ATTAAAATA (-): 98256)
POU2F1 (Sequence: ATTAGCATA (-): 99714)
POU2F1 (Sequence: ATTTACATA (-): 103244)
POU2F1 (Sequence: ATTTAAATA (-): 104002)
POU2F1 (Sequence: ATTTGCATA (-): 117296)
POU2F1 (Sequence: ATTTACATA (-): 118764)
POU2F1 (Sequence: ATTTACATA (-): 119252)
POU2F1 (Sequence: ATTAAAATA (-): 119453)
POU2F1 (Sequence: ATTTACATA (-): 120265)
POU5F1 (Sequence: TTTGCAT (-): 100521)
POU5F1 (Sequence: TTTGCAT (-): 108245)
POU5F1 (Sequence: TTTGCAT (-): 111493)
POU5F1 (Sequence: TTTGCAT (-): 117297)
RHOXF1 (Sequence: TGATCT (+): 98651)
RHOXF1 (Sequence: TAAGCT (+): 100150)
RHOXF1 (Sequence: TGAGCT (+): 101425)
RHOXF1 (Sequence: TGAGCC (+): 101890)
RHOXF1 (Sequence: TGAGCC (+): 103534)
RHOXF1 (Sequence: TGAGCC (+): 103783)
RHOXF1 (Sequence: TGAGCC (+): 105896)
RHOXF1 (Sequence: TGATCT (+): 106082)
RHOXF1 (Sequence: TGAGCC (+): 106103)
RHOXF1 (Sequence: TGAGCT (+): 106386)
RHOXF1 (Sequence: TAATCC (+): 107250)
RHOXF1 (Sequence: TGAGCC (+): 108149)
RHOXF1 (Sequence: TGAGCC (+): 110341)
RHOXF1 (Sequence: TGATCT (+): 110708)
RHOXF1 (Sequence: TAATCT (+): 111962)
RHOXF1 (Sequence: TAAGCT (+): 112686)
RHOXF1 (Sequence: TGATCT (+): 113217)
RHOXF1 (Sequence: TAAGCC (+): 113982)
RHOXF1 (Sequence: TAATCT (+): 114306)
RHOXF1 (Sequence: TAAGCT (+): 114654)
RHOXF1 (Sequence: TGATCT (+): 114705)
RHOXF1 (Sequence: TGATCT (+): 114855)
RHOXF1 (Sequence: TGAGCC (+): 115265)
RHOXF1 (Sequence: TGAGCC (+): 115785)
RHOXF1 (Sequence: TAATCC (+): 116103)
RHOXF1 (Sequence: TGAGCC (+): 116400)
RHOXF1 (Sequence: TGAGCT (+): 116638)
RHOXF1 (Sequence: TGAGCT (+): 117187)
RHOXF1 (Sequence: TAAGCC (+): 118091)
RHOXF1 (Sequence: TGATCC (+): 118956)
RHOXF1 (Sequence: TGATCC (+): 118966)
RHOXF1 (Sequence: TAAGCT (+): 121082)
RHOXF1 (Sequence: TAATCC (+): 122487)
RHOXF1 (Sequence: TAAGCC (+): 122497)
RHOXF1 (Sequence: TGATCT (+): 122511)
Rhox11 (Sequence: TAAACAGCA (-): 101335)
Rhox11 (Sequence: AAAACAGCA (-): 102385)
RFX4_2 (Sequence: GTAACCACG (-): 119587)
Gata4 (Sequence: AGATAAG (-): 109773)
Gata4 (Sequence: AGATAAG (-): 118088)
FOXO3_hsa (Sequence: TTGTTTAC (-): 107774)
FOXO3_hsa (Sequence: ATGTTTAC (-): 109546)
FOXO3_hsa (Sequence: TTGTTTAC (-): 120776)
Gata4 (Sequence: CTTATCT (+): 98602)
Gata4 (Sequence: CTTATCT (+): 98890)
Gata4 (Sequence: CTTATCT (+): 114519)
Gata4 (Sequence: CTTATCT (+): 117977)
Gata4 (Sequence: GTTATCT (+): 118979)
Sox5 (Sequence: AACAAT (-): 99186)
Sox5 (Sequence: AACAAT (-): 99722)
Sox5 (Sequence: AACAAT (-): 103169)
Sox5 (Sequence: AACAAT (-): 105287)
Sox5 (Sequence: AACAAT (-): 106690)
Sox5 (Sequence: AACAAT (-): 109667)
Sox5 (Sequence: AACAAT (-): 113818)
Sox5 (Sequence: AACAAT (-): 118881)
Sox5 (Sequence: AACAAT (-): 119236)
Sox5 (Sequence: AACAAT (-): 119633)
Sox5 (Sequence: AACAAT (-): 121860)