Predicted piRNA cluster no. 141     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
1869312
1889564
Gene Set
RepeatMasker
Mapped
Reads
65.59
plus strand
minus strand
65.59
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00003270) Tr:4: 1869306-1869857 (+)
2. unknown (unknowndsub_v4_00003271) Tr:4: 1869934-1870676 (-)
3. unknown (unknowndsub_v4_00003271) Tr:4: 1870734-1870959 (-)
4. unknown (unknowndsub_v4_00003272) Tr:4: 1882675-1883795 (+)
5. unknown (unknowndsub_v4_00003272) Tr:4: 1883854-1883936 (+)
6. unknown (unknowndsub_v4_00003272) Tr:4 UTR: 1882675-1882915 (+)

RepeatMasker Annotation
1. TE-456_Dsub: 1870965-1871125 (-), Divergence to consensus: 1.9%
2. TE-548_Dsub: 1871302-1871427 (+), Divergence to consensus: 11.2%
3. TE-436_Dsub: 1871412-1871465 (-), Divergence to consensus: 9.7%
4. TE-633_Dsub: 1871422-1871710 (+), Divergence to consensus: 6.1%
5. TE-572_Dsub: 1871692-1871810 (+), Divergence to consensus: 24.8%
6. TE-607_Dsub: 1871707-1872017 (-), Divergence to consensus: 12.5%
7. TE-456_Dsub: 1872005-1872091 (-), Divergence to consensus: 12.2%
8. TE-558_Dsub: 1872058-1872290 (+), Divergence to consensus: 21.1%
9. TE-643_Dsub: 1872244-1877609 (-), Divergence to consensus: 0.9%
10. TE-613_Dsub: 1877613-1877881 (-), Divergence to consensus: 14.7%
11. TE-626_Dsub: 1877925-1878399 (+), Divergence to consensus: 14.3%
12. TE-615_Dsub: 1878420-1878593 (-), Divergence to consensus: 4.1%
13. TE-615_Dsub: 1878569-1878598 (+), Divergence to consensus: 3.3%
14. TE-583_Dsub: 1882514-1882598 (+), Divergence to consensus: 10.6%
15. TE-552_Dsub: 1882586-1882644 (+), Divergence to consensus: 20.3%
16. TE-622_Dsub: 1884163-1885027 (+), Divergence to consensus: 22.1%
17. CR1-4_Dsub: 1885191-1888036 (-), Divergence to consensus: 7.6%
18. TE-231_Dsub: 1888083-1888200 (+), Divergence to consensus: 15.6%
19. TE-185_Dsub: 1888149-1888211 (-), Divergence to consensus: 18.2%
20. TE-581_Dsub: 1888445-1889225 (+), Divergence to consensus: 14.6%
21. TE-416_Dsub: 1889144-1889271 (-), Divergence to consensus: 24.4%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 1871944)
FOXP1 (Sequence: TGTTTAC (-): 1870911)
FOXP1 (Sequence: TGTTTAC (-): 1887093)
Lhx8 (Sequence: TTAATTAA (-): 1872636)
Lhx8 (Sequence: TTAATTAA (-): 1879164)
Lhx8 (Sequence: TTAATTAG (-): 1884622)
Lhx8 (Sequence: TTAATTAA (-): 1886895)
Lhx8 (Sequence: CTAATTAA (-): 1887436)
Lhx8 (Sequence: CTAATTAA (-): 1888794)
Rhox11 (Sequence: CGCTGTATT (+): 1870348)
Rhox11 (Sequence: TGGTGTTAT (+): 1871294)
Rhox11 (Sequence: TGGTGTATA (+): 1874098)
Rhox11 (Sequence: TGCTGTTTA (+): 1882419)
FOXO1 (Sequence: GTTGTTTTC (+): 1871094)
FOXO1 (Sequence: GTTGTTTTT (+): 1875878)
FOXO1 (Sequence: GTTGTTTTC (+): 1878360)
FOXO1 (Sequence: CCTGTTTTT (+): 1878451)
FOXO1 (Sequence: GTTGTTTTT (+): 1882405)
FOXO1 (Sequence: GCTGTTTAT (+): 1882420)
POU5F1 (Sequence: ATGCAAA (+): 1878714)
POU5F1 (Sequence: ATGCAAA (+): 1883882)
POU5F1 (Sequence: ATGCAAA (+): 1889009)
POU5F1 (Sequence: ATGCAAA (+): 1889406)
FOXO3_mmu (Sequence: TGTTTAGC (-): 1870890)
FOXO3_mmu (Sequence: TGTTTTCC (-): 1871096)
FOXO3_mmu (Sequence: TGTTTTGA (-): 1876004)
FOXO3_mmu (Sequence: TGTTTTCA (-): 1877072)
FOXO3_mmu (Sequence: TGTTTTCC (-): 1878362)
FOXO3_mmu (Sequence: TGTTTACA (-): 1887093)
Nobox (Sequence: TAATTAGC (+): 1884623)
RHOXF1 (Sequence: AGATCA (-): 1869385)
RHOXF1 (Sequence: AGATCA (-): 1869530)
RHOXF1 (Sequence: AGATTA (-): 1870361)
RHOXF1 (Sequence: AGCTTA (-): 1870392)
RHOXF1 (Sequence: AGCTTA (-): 1871190)
RHOXF1 (Sequence: AGATCA (-): 1871538)
RHOXF1 (Sequence: AGATCA (-): 1871933)
RHOXF1 (Sequence: AGCTTA (-): 1871991)
RHOXF1 (Sequence: AGCTTA (-): 1873251)
RHOXF1 (Sequence: AGCTCA (-): 1873752)
RHOXF1 (Sequence: AGATTA (-): 1874271)
RHOXF1 (Sequence: AGATCA (-): 1874361)
RHOXF1 (Sequence: AGATTA (-): 1874469)
RHOXF1 (Sequence: AGATTA (-): 1874628)
RHOXF1 (Sequence: AGATCA (-): 1874727)
RHOXF1 (Sequence: GGATCA (-): 1874745)
RHOXF1 (Sequence: GGATCA (-): 1874868)
RHOXF1 (Sequence: AGATCA (-): 1877053)
RHOXF1 (Sequence: AGCTCA (-): 1877513)
RHOXF1 (Sequence: AGCTTA (-): 1878199)
RHOXF1 (Sequence: AGATTA (-): 1878241)
RHOXF1 (Sequence: AGATTA (-): 1878250)
RHOXF1 (Sequence: GGCTTA (-): 1878589)
RHOXF1 (Sequence: GGCTCA (-): 1878899)
RHOXF1 (Sequence: AGCTTA (-): 1880448)
RHOXF1 (Sequence: GGATCA (-): 1882935)
RHOXF1 (Sequence: AGATCA (-): 1884569)
RHOXF1 (Sequence: AGCTTA (-): 1884656)
RHOXF1 (Sequence: AGCTTA (-): 1884745)
RHOXF1 (Sequence: AGCTCA (-): 1885180)
RHOXF1 (Sequence: GGCTCA (-): 1885638)
RHOXF1 (Sequence: AGATCA (-): 1886042)
RHOXF1 (Sequence: AGATCA (-): 1886192)
RHOXF1 (Sequence: AGCTTA (-): 1886243)
RHOXF1 (Sequence: AGATTA (-): 1886581)
RHOXF1 (Sequence: GGCTTA (-): 1886878)
RHOXF1 (Sequence: AGATCA (-): 1887629)
RHOXF1 (Sequence: GGCTCA (-): 1888959)
FOXO3_mmu (Sequence: GCAAAACA (+): 1873907)
RFX4_1 (Sequence: GTTGCCAAG (-): 1878314)
Sox5 (Sequence: ATTGTT (+): 1870225)
Sox5 (Sequence: ATTGTT (+): 1872770)
Sox5 (Sequence: ATTGTT (+): 1875945)
Sox5 (Sequence: ATTGTT (+): 1887031)
FOXO1 (Sequence: AAAAACAGG (-): 1877945)
Nobox (Sequence: GGTAATTA (-): 1880128)
Nobox (Sequence: ACCAATTA (-): 1883999)
Nobox (Sequence: AGTAATTA (-): 1887207)
Nobox (Sequence: AGCAATTA (-): 1888450)
Nobox (Sequence: GCTAATTA (-): 1888793)
Mybl1_1 (Sequence: AACCGTTA (+): 1889169)
POU2F1 (Sequence: ATTAAAATA (-): 1880194)
SOX9 (Sequence: TCATTGTT (+): 1872768)
POU5F1 (Sequence: TTTGCAT (-): 1877194)
POU5F1 (Sequence: TTTGCAT (-): 1878267)
POU5F1 (Sequence: TTTGCAT (-): 1883270)
POU5F1 (Sequence: TTTGCAT (-): 1884405)
POU5F1 (Sequence: TTTGCAT (-): 1888205)
Mybl1_1 (Sequence: TAACGGTT (-): 1871473)
RHOXF1 (Sequence: TGATCC (+): 1869772)
RHOXF1 (Sequence: TAATCT (+): 1869899)
RHOXF1 (Sequence: TAAGCC (+): 1870237)
RHOXF1 (Sequence: TAATCT (+): 1870400)
RHOXF1 (Sequence: TGAGCC (+): 1871564)
RHOXF1 (Sequence: TAATCT (+): 1873164)
RHOXF1 (Sequence: TGATCT (+): 1873978)
RHOXF1 (Sequence: TAATCC (+): 1874244)
RHOXF1 (Sequence: TAAGCT (+): 1875703)
RHOXF1 (Sequence: TAAGCT (+): 1875901)
RHOXF1 (Sequence: TAATCC (+): 1878593)
RHOXF1 (Sequence: TGATCT (+): 1879802)
RHOXF1 (Sequence: TGAGCT (+): 1879940)
RHOXF1 (Sequence: TAAGCC (+): 1880392)
RHOXF1 (Sequence: TAATCC (+): 1880429)
RHOXF1 (Sequence: TGATCC (+): 1880751)
RHOXF1 (Sequence: TGAGCC (+): 1880771)
RHOXF1 (Sequence: TGAGCT (+): 1882565)
RHOXF1 (Sequence: TAAGCT (+): 1884122)
RHOXF1 (Sequence: TGAGCC (+): 1884329)
RHOXF1 (Sequence: TGATCT (+): 1884369)
RHOXF1 (Sequence: TGATCT (+): 1885136)
RHOXF1 (Sequence: TGAGCT (+): 1885178)
RHOXF1 (Sequence: TAATCC (+): 1885523)
RHOXF1 (Sequence: TGAGCC (+): 1885881)
RHOXF1 (Sequence: TGAGCT (+): 1886595)
RHOXF1 (Sequence: TGAGCT (+): 1887449)
RHOXF1 (Sequence: TAAGCC (+): 1887691)
RHOXF1 (Sequence: TGAGCT (+): 1888304)
RHOXF1 (Sequence: TAAGCT (+): 1888317)
RHOXF1 (Sequence: TGATCT (+): 1888849)
Rhox11 (Sequence: TTAACAGCA (-): 1875720)
Sox5 (Sequence: AACAAT (-): 1870807)
Sox5 (Sequence: AACAAT (-): 1871944)
Sox5 (Sequence: AACAAT (-): 1872180)
Sox5 (Sequence: AACAAT (-): 1875427)
Sox5 (Sequence: AACAAT (-): 1878150)
Sox5 (Sequence: AACAAT (-): 1878229)
Sox5 (Sequence: AACAAT (-): 1878659)
Sox5 (Sequence: AACAAT (-): 1882928)
Sox5 (Sequence: AACAAT (-): 1883709)