Predicted piRNA cluster no. 24     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrA_v4 
16328000
16338004
Gene Set
RepeatMasker
Mapped
Reads
18.81
plus strand
minus strand
18.81
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00009892) Tr:4: 16332348-16332379 (+)
2. unknown (unknowndsub_v4_00009892) Tr:4: 16336290-16336449 (+)

RepeatMasker Annotation
1. TE-586_Dsub: 16327735-16328014 (+), Divergence to consensus: 25.7%
2. TE-603_Dsub: 16327877-16328079 (+), Divergence to consensus: 38%
3. TE-633_Dsub: 16328015-16328069 (-), Divergence to consensus: 10%
4. TE-231_Dsub: 16328047-16328138 (+), Divergence to consensus: 18.5%
5. TE-560_Dsub: 16328169-16328421 (-), Divergence to consensus: 15.4%
6. TE-590_Dsub: 16328422-16328445 (+), Divergence to consensus: 19.4%
7. TE-618_Dsub: 16328460-16329850 (+), Divergence to consensus: 20.3%
8. TE-22_Dsub: 16330041-16330143 (+), Divergence to consensus: 40.2%
9. TE-570_Dsub: 16330068-16330184 (-), Divergence to consensus: 25.3%
10. TE-322_Dsub: 16330203-16330437 (-), Divergence to consensus: 35%
11. HELITRON-3_Dsub: 16330270-16330407 (-), Divergence to consensus: 38.1%
12. TE-509_Dsub: 16330408-16330533 (+), Divergence to consensus: 32.2%
13. TE-516_Dsub: 16330437-16330548 (+), Divergence to consensus: 27.7%
14. TE-252_Dsub: 16330467-16330595 (-), Divergence to consensus: 36.4%
15. HELITRON-3_Dsub: 16330549-16330572 (-), Divergence to consensus: 38.1%
16. TE-456_Dsub: 16330698-16330922 (-), Divergence to consensus: 21.5%
17. TE-577_Dsub: 16331250-16331519 (-), Divergence to consensus: 39.5%
18. TE-607_Dsub: 16331384-16331577 (+), Divergence to consensus: 39.2%
19. TE-456_Dsub: 16335299-16335419 (-), Divergence to consensus: 38%

Transcription Factor Binding Sites
Rhox11 (Sequence: CGCTGTTTT (+): 16331281)
FOXP1 (Sequence: GTAAACA (+): 16337972)
POU5F1 (Sequence: ATGCAAA (+): 16336232)
FOXO3_mmu (Sequence: TGTTTAGC (-): 16335267)
FOXO3_mmu (Sequence: TGTTTTGC (-): 16337248)
POU2F1 (Sequence: TATTTTAAT (+): 16331572)
POU2F1 (Sequence: TATTTAAAT (+): 16337271)
Nobox (Sequence: TAATTACT (+): 16329853)
Nobox (Sequence: TAATTGCT (+): 16330776)
RHOXF1 (Sequence: AGCTTA (-): 16328474)
RHOXF1 (Sequence: AGATTA (-): 16329039)
RHOXF1 (Sequence: AGATCA (-): 16329940)
RHOXF1 (Sequence: AGCTTA (-): 16330563)
RHOXF1 (Sequence: AGATCA (-): 16331603)
RHOXF1 (Sequence: AGATTA (-): 16331816)
RHOXF1 (Sequence: GGATTA (-): 16335488)
RHOXF1 (Sequence: GGATTA (-): 16336746)
RHOXF1 (Sequence: GGATCA (-): 16336944)
RHOXF1 (Sequence: AGCTTA (-): 16337049)
FOXO3_mmu (Sequence: TGAAAACA (+): 16328783)
FOXO3_mmu (Sequence: GCAAAACA (+): 16335902)
FOXO3_mmu (Sequence: TCTAAACA (+): 16337953)
FOXO3_mmu (Sequence: TGTAAACA (+): 16337971)
Sox5 (Sequence: ATTGTT (+): 16328123)
Sox5 (Sequence: ATTGTT (+): 16330762)
Sox5 (Sequence: ATTGTT (+): 16332312)
FOXO1 (Sequence: AAAAACAGG (-): 16330404)
POU2F1 (Sequence: ATTTAAATA (-): 16337272)
SOX9 (Sequence: CCATTGTT (+): 16328121)
RHOXF1 (Sequence: TAAGCC (+): 16328085)
RHOXF1 (Sequence: TAAGCT (+): 16328472)
RHOXF1 (Sequence: TGAGCT (+): 16328934)
RHOXF1 (Sequence: TGATCC (+): 16329087)
RHOXF1 (Sequence: TGAGCT (+): 16329096)
RHOXF1 (Sequence: TGATCC (+): 16329241)
RHOXF1 (Sequence: TGATCC (+): 16329692)
RHOXF1 (Sequence: TGATCC (+): 16329864)
RHOXF1 (Sequence: TGAGCT (+): 16332048)
RHOXF1 (Sequence: TGATCC (+): 16332153)
RHOXF1 (Sequence: TGAGCC (+): 16332878)
RHOXF1 (Sequence: TGATCC (+): 16332923)
RHOXF1 (Sequence: TGAGCC (+): 16333140)
RHOXF1 (Sequence: TGATCC (+): 16333185)
RHOXF1 (Sequence: TGAGCC (+): 16333402)
RHOXF1 (Sequence: TGATCC (+): 16333447)
RHOXF1 (Sequence: TGAGCC (+): 16333664)
RHOXF1 (Sequence: TGATCC (+): 16333709)
RHOXF1 (Sequence: TGAGCC (+): 16333926)
RHOXF1 (Sequence: TGATCC (+): 16333971)
RHOXF1 (Sequence: TGAGCC (+): 16334188)
RHOXF1 (Sequence: TGATCC (+): 16334233)
RHOXF1 (Sequence: TGAGCC (+): 16334450)
RHOXF1 (Sequence: TGATCC (+): 16334495)
RHOXF1 (Sequence: TGAGCC (+): 16334712)
RHOXF1 (Sequence: TGATCC (+): 16334757)
RHOXF1 (Sequence: TGATCT (+): 16335615)
RHOXF1 (Sequence: TGATCC (+): 16336098)
RHOXF1 (Sequence: TGAGCT (+): 16336157)
RHOXF1 (Sequence: TAAGCT (+): 16336713)
RHOXF1 (Sequence: TAATCT (+): 16337281)
Rhox11 (Sequence: AAAACAGCG (-): 16336283)
FOXO3_hsa (Sequence: GTAAACAA (+): 16337972)
RFX4_2 (Sequence: GTAACTATG (-): 16328143)
Sox5 (Sequence: AACAAT (-): 16328265)
Sox5 (Sequence: AACAAT (-): 16328787)