Predicted piRNA cluster no. 129     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
498687
503957
Gene Set
RepeatMasker
Mapped
Reads
240.64
plus strand
minus strand
240.64
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-488_Dsub: 499157-499231 (+), Divergence to consensus: 19.6%
2. TE-488_Dsub: 499187-499242 (-), Divergence to consensus: 24.5%
3. TE-100_Dsub: 499648-499663 (+), Divergence to consensus: 29.9%
4. HELITRON-4_Dsub: 499664-499691 (-), Divergence to consensus: 26.7%
5. TE-22_Dsub: 499692-499734 (-), Divergence to consensus: 11.6%
6. TE-100_Dsub: 499735-499764 (+), Divergence to consensus: 29.9%
7. TE-267_Dsub: 499736-499909 (-), Divergence to consensus: 37.1%
8. TE-494_Dsub: 499854-500901 (+), Divergence to consensus: 1.7%
9. TE-267_Dsub: 500676-500988 (-), Divergence to consensus: 39.9%
10. TE-267_Dsub: 501141-501320 (-), Divergence to consensus: 31%
11. CR1-3_Dsub: 501254-503641 (+), Divergence to consensus: 25%
12. CR1-2_Dsub: 502225-503782 (-), Divergence to consensus: 6.1%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 498874)
FIGLA (Sequence: AACAGCTGTT (-): 499837)
Lhx8 (Sequence: TTAATTAA (-): 503769)
FOXO1 (Sequence: GTTGTTTAT (+): 501212)
FOXO3_mmu (Sequence: TGTTTAGA (-): 499419)
FOXO3_mmu (Sequence: TGTTTTCA (-): 499421)
Nobox (Sequence: TAATTACT (+): 503602)
Nobox (Sequence: TAATTAGT (+): 503724)
RHOXF1 (Sequence: GGCTTA (-): 500979)
RHOXF1 (Sequence: AGATCA (-): 502037)
RHOXF1 (Sequence: AGCTCA (-): 503445)
RHOXF1 (Sequence: AGCTTA (-): 503849)
Sox5 (Sequence: ATTGTT (+): 499429)
Sox5 (Sequence: ATTGTT (+): 503241)
Sox5 (Sequence: ATTGTT (+): 503765)
Sox5 (Sequence: ATTGTT (+): 503805)
Mybl1_1 (Sequence: AACCGTTA (+): 503125)
POU2F1 (Sequence: ATTAAAATA (-): 503934)
RHOXF1 (Sequence: TAATCC (+): 499522)
RHOXF1 (Sequence: TAAGCT (+): 500641)
RHOXF1 (Sequence: TAATCC (+): 501944)
RHOXF1 (Sequence: TGATCT (+): 502324)
RHOXF1 (Sequence: TGATCC (+): 502635)
RHOXF1 (Sequence: TAAGCT (+): 502642)
RHOXF1 (Sequence: TAAGCT (+): 503443)
Rhox11 (Sequence: TTTACACCA (-): 503401)
Gata4 (Sequence: AGATAAC (-): 501826)
Gata4 (Sequence: CTTATCT (+): 500647)
Sox5 (Sequence: AACAAT (-): 498874)
Sox5 (Sequence: AACAAT (-): 502727)
Sox5 (Sequence: AACAAT (-): 503304)