Predicted piRNA cluster no. 164     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
15933391
15938630
Gene Set
RepeatMasker
Mapped
Reads
13.35
plus strand
minus strand
13.35
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-437_Dsub: 15933398-15933757 (+), Divergence to consensus: 0.6%
2. GYPSY-11_Dsub: 15933758-15935443 (+), Divergence to consensus: 4%
3. GYPSY-11_Dsub: 15935485-15935692 (+), Divergence to consensus: 1%
4. GYPSY-11_Dsub: 15935684-15938268 (+), Divergence to consensus: 1.7%
5. TE-437_Dsub: 15938270-15938633 (+), Divergence to consensus: 0.6%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAA (-): 15936598)
FOXP1 (Sequence: GTAAACA (+): 15935912)
FOXP1 (Sequence: GTAAACA (+): 15936503)
POU5F1 (Sequence: ATGCAAA (+): 15934093)
POU5F1 (Sequence: ATGCAAA (+): 15935882)
FOXO3_mmu (Sequence: TGTTTTCA (-): 15933684)
FOXO3_mmu (Sequence: TGTTTAGA (-): 15937141)
FOXO3_mmu (Sequence: TGTTTTCA (-): 15938556)
RHOXF1 (Sequence: AGATTA (-): 15935675)
RHOXF1 (Sequence: AGCTTA (-): 15935750)
RHOXF1 (Sequence: AGATTA (-): 15936170)
RHOXF1 (Sequence: GGATTA (-): 15936987)
RHOXF1 (Sequence: AGATCA (-): 15937057)
RHOXF1 (Sequence: AGCTTA (-): 15937601)
RHOXF1 (Sequence: GGATCA (-): 15937866)
RHOXF1 (Sequence: AGCTCA (-): 15938249)
FOXO3_mmu (Sequence: TGTAAACA (+): 15935911)
FOXO3_mmu (Sequence: TCAAAACA (+): 15936908)
FOXO1 (Sequence: AAAAACAGG (-): 15937989)
Nobox (Sequence: GGCAATTA (-): 15934012)
POU2F1 (Sequence: ATTAGAATA (-): 15935454)
RHOXF1 (Sequence: TAATCC (+): 15934541)
RHOXF1 (Sequence: TAATCC (+): 15935733)
RHOXF1 (Sequence: TAATCC (+): 15937354)
RHOXF1 (Sequence: TAAGCC (+): 15937504)
Rhox11 (Sequence: AAAACACCG (-): 15934479)
Rhox11 (Sequence: TAAACACCA (-): 15936504)
FOXO3_hsa (Sequence: GTAAACAA (+): 15935912)
Sox5 (Sequence: AACAAT (-): 15933985)
Sox5 (Sequence: AACAAT (-): 15935795)
Sox5 (Sequence: AACAAT (-): 15936590)
Sox5 (Sequence: AACAAT (-): 15936598)
Sox5 (Sequence: AACAAT (-): 15936672)