Predicted piRNA cluster no. 163     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
12826000
12832022
Gene Set
RepeatMasker
Mapped
Reads
18.65
plus strand
minus strand
18.65
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. GYPSY-18_Dsub: 12825636-12827806 (+), Divergence to consensus: 1.2%
2. GYPSY-3_Dsub: 12827807-12832685 (+), Divergence to consensus: 1.9%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAG (-): 12827925)
FOXO3_mmu (Sequence: TGTTTTGA (-): 12827333)
FOXO3_mmu (Sequence: TGTTTTGC (-): 12828518)
POU2F1 (Sequence: TATTCAAAT (+): 12828384)
Nobox (Sequence: TAATTGGC (+): 12827807)
RHOXF1 (Sequence: AGCTTA (-): 12826083)
RHOXF1 (Sequence: AGCTCA (-): 12826922)
RHOXF1 (Sequence: GGCTCA (-): 12827146)
RHOXF1 (Sequence: AGATTA (-): 12827264)
RHOXF1 (Sequence: AGATCA (-): 12827533)
RHOXF1 (Sequence: AGCTTA (-): 12827717)
RHOXF1 (Sequence: GGATTA (-): 12827994)
RHOXF1 (Sequence: AGATCA (-): 12828125)
RHOXF1 (Sequence: AGCTTA (-): 12828344)
RHOXF1 (Sequence: AGATCA (-): 12828636)
RHOXF1 (Sequence: AGATCA (-): 12829555)
RHOXF1 (Sequence: GGATTA (-): 12830099)
RHOXF1 (Sequence: AGCTTA (-): 12830636)
RHOXF1 (Sequence: AGATCA (-): 12830771)
RHOXF1 (Sequence: AGCTTA (-): 12830962)
RHOXF1 (Sequence: AGCTCA (-): 12831801)
Sox5 (Sequence: ATTGTT (+): 12826870)
Sox5 (Sequence: ATTGTT (+): 12827421)
Sox5 (Sequence: ATTGTT (+): 12828450)
Sox5 (Sequence: ATTGTT (+): 12831749)
Nobox (Sequence: ACCAATTA (-): 12830386)
POU5F1 (Sequence: TTTGCAT (-): 12828605)
RHOXF1 (Sequence: TGATCC (+): 12826337)
RHOXF1 (Sequence: TAAGCT (+): 12826533)
RHOXF1 (Sequence: TAAGCC (+): 12826571)
RHOXF1 (Sequence: TGAGCT (+): 12826920)
RHOXF1 (Sequence: TGATCC (+): 12827570)
RHOXF1 (Sequence: TAATCT (+): 12828611)
RHOXF1 (Sequence: TGAGCT (+): 12830818)
RHOXF1 (Sequence: TGATCC (+): 12831216)
RHOXF1 (Sequence: TAAGCT (+): 12831412)
RHOXF1 (Sequence: TAAGCC (+): 12831450)
RHOXF1 (Sequence: TGAGCT (+): 12831799)
Gata4 (Sequence: AGATAAG (-): 12830402)
Gata4 (Sequence: GTTATCT (+): 12828206)
Gata4 (Sequence: CTTATCT (+): 12830688)
Sox5 (Sequence: AACAAT (-): 12827925)