Predicted piRNA cluster no. 77     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
4294340
4306508
Gene Set
RepeatMasker
Mapped
Reads
32
plus strand
minus strand
32
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. GYPSY-18_Dsub: 4294338-4296483 (+), Divergence to consensus: 3.1%
2. GYPSY-18_Dsub: 4296485-4304146 (+), Divergence to consensus: 5.9%
3. GYPSY-18_Dsub: 4304147-4304290 (+), Divergence to consensus: 0.7%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAG (-): 4296602)
FOXP1 (Sequence: TGTTTAC (-): 4299301)
Lhx8 (Sequence: TTAATTAG (-): 4304504)
FOXP1 (Sequence: GTAAACA (+): 4297853)
FOXO1 (Sequence: CCTGTTTTT (+): 4304534)
POU5F1 (Sequence: ATGCAAA (+): 4297607)
POU5F1 (Sequence: ATGCAAA (+): 4305458)
FOXO3_mmu (Sequence: TGTTTTGA (-): 4296012)
FOXO3_mmu (Sequence: TGTTTTGC (-): 4297194)
FOXO3_mmu (Sequence: TGTTTTGA (-): 4303818)
POU2F1 (Sequence: TATTCAAAT (+): 4297061)
Nobox (Sequence: TAATTGGC (+): 4296484)
Nobox (Sequence: TAATTGGT (+): 4300158)
Nobox (Sequence: TAATTAGT (+): 4304505)
Nobox (Sequence: TAATTGGT (+): 4305753)
RHOXF1 (Sequence: AGCTTA (-): 4294459)
RHOXF1 (Sequence: AGATCA (-): 4294594)
RHOXF1 (Sequence: AGCTTA (-): 4294787)
RHOXF1 (Sequence: AGCTCA (-): 4295625)
RHOXF1 (Sequence: AGATTA (-): 4295943)
RHOXF1 (Sequence: AGATCA (-): 4296212)
RHOXF1 (Sequence: AGCTTA (-): 4296394)
RHOXF1 (Sequence: GGATTA (-): 4296671)
RHOXF1 (Sequence: AGATCA (-): 4296802)
RHOXF1 (Sequence: AGCTTA (-): 4297021)
RHOXF1 (Sequence: AGATCA (-): 4297312)
RHOXF1 (Sequence: AGATTA (-): 4298968)
RHOXF1 (Sequence: GGATTA (-): 4299497)
RHOXF1 (Sequence: GGATTA (-): 4299926)
RHOXF1 (Sequence: GGCTTA (-): 4300674)
RHOXF1 (Sequence: GGATTA (-): 4301728)
RHOXF1 (Sequence: AGCTTA (-): 4302265)
RHOXF1 (Sequence: AGATCA (-): 4302400)
RHOXF1 (Sequence: AGCTTA (-): 4302593)
RHOXF1 (Sequence: AGCTCA (-): 4303431)
RHOXF1 (Sequence: AGATTA (-): 4303749)
RHOXF1 (Sequence: AGATCA (-): 4304018)
RHOXF1 (Sequence: AGCTTA (-): 4304200)
RHOXF1 (Sequence: GGCTTA (-): 4306461)
FOXO3_mmu (Sequence: GGTAAACA (+): 4297852)
Sox5 (Sequence: ATTGTT (+): 4295573)
Sox5 (Sequence: ATTGTT (+): 4296100)
Sox5 (Sequence: ATTGTT (+): 4297127)
Sox5 (Sequence: ATTGTT (+): 4299090)
Sox5 (Sequence: ATTGTT (+): 4303379)
Sox5 (Sequence: ATTGTT (+): 4303906)
Sox5 (Sequence: ATTGTT (+): 4304369)
FOXO1 (Sequence: AAAAACAGC (-): 4306394)
Nobox (Sequence: ACCAATTA (-): 4302015)
POU5F1 (Sequence: TTTGCAT (-): 4297281)
RHOXF1 (Sequence: TGAGCT (+): 4294641)
RHOXF1 (Sequence: TGATCC (+): 4295041)
RHOXF1 (Sequence: TAAGCT (+): 4295236)
RHOXF1 (Sequence: TAAGCC (+): 4295274)
RHOXF1 (Sequence: TGAGCT (+): 4295623)
RHOXF1 (Sequence: TAATCT (+): 4295879)
RHOXF1 (Sequence: TGATCC (+): 4296247)
RHOXF1 (Sequence: TAAGCC (+): 4298704)
RHOXF1 (Sequence: TAATCC (+): 4298725)
RHOXF1 (Sequence: TAAGCT (+): 4298928)
RHOXF1 (Sequence: TGAGCT (+): 4299032)
RHOXF1 (Sequence: TAATCT (+): 4299240)
RHOXF1 (Sequence: TGAGCT (+): 4302447)
RHOXF1 (Sequence: TGATCC (+): 4302847)
RHOXF1 (Sequence: TAAGCT (+): 4303042)
RHOXF1 (Sequence: TAAGCC (+): 4303080)
RHOXF1 (Sequence: TGAGCT (+): 4303429)
RHOXF1 (Sequence: TAATCT (+): 4303685)
RHOXF1 (Sequence: TGATCC (+): 4304053)
RHOXF1 (Sequence: TGAGCT (+): 4306005)
Rhox11 (Sequence: TAAACAGCG (-): 4299556)
Gata4 (Sequence: AGATAAC (-): 4297900)
Gata4 (Sequence: AGATAAG (-): 4298925)
Gata4 (Sequence: AGATAAG (-): 4302031)
FOXO3_hsa (Sequence: ATGTTTAC (-): 4299300)
Gata4 (Sequence: CTTATCT (+): 4294511)
Gata4 (Sequence: GTTATCT (+): 4296883)
Gata4 (Sequence: CTTATCT (+): 4302317)
Sox5 (Sequence: AACAAT (-): 4296602)
Sox5 (Sequence: AACAAT (-): 4298187)