Predicted piRNA cluster no. 69     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
677168
685697
Gene Set
RepeatMasker
Mapped
Reads
82.66
plus strand
minus strand
82.66
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00005707) Tr:4: 677005-677201 (+)
2. unknown (unknowndsub_v4_00005707) Tr:4: 677322-677451 (+)
3. unknown (unknowndsub_v4_00005707) Tr:4: 677005-677451 (+)
4. unknown (unknowndsub_v4_00005707) Tr:4: 677005-677451 (+)

RepeatMasker Annotation
1. TE-622_Dsub: 677579-678344 (+), Divergence to consensus: 14.4%
2. TE-259_Dsub: 678815-678926 (+), Divergence to consensus: 37.1%
3. TE-597_Dsub: 678828-678995 (-), Divergence to consensus: 12%
4. TE-572_Dsub: 678911-679011 (+), Divergence to consensus: 32.2%
5. TE-7_Dsub: 679638-679786 (-), Divergence to consensus: 33.5%
6. TE-607_Dsub: 679657-680152 (+), Divergence to consensus: 43.3%
7. TE-138_Dsub: 680043-680353 (-), Divergence to consensus: 33.5%
8. HELITRON-3_Dsub: 680225-680319 (-), Divergence to consensus: 29.5%
9. TE-562_Dsub: 680320-680368 (+), Divergence to consensus: 28.9%
10. TE-337_Dsub: 680698-680762 (-), Divergence to consensus: 28%
11. TE-231_Dsub: 680705-680720 (+), Divergence to consensus: 25.6%
12. TE-642_Dsub: 680721-680795 (-), Divergence to consensus: 32.2%
13. R1-1_Dsub: 680787-681498 (+), Divergence to consensus: 40.6%
14. TE-231_Dsub: 680796-680819 (+), Divergence to consensus: 25.6%
15. TE-585_Dsub: 682155-682387 (+), Divergence to consensus: 1.3%
16. GYPSY-17_Dsub: 682388-685134 (+), Divergence to consensus: 0.6%
17. TE-585_Dsub: 685135-685367 (+), Divergence to consensus: 1.3%
18. TE-202_Dsub: 685390-685424 (+), Divergence to consensus: 8.8%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 678613)
SOX9 (Sequence: AACAATAA (-): 680179)
SOX9 (Sequence: AACAATGA (-): 683921)
FIGLA (Sequence: ACCAGCTGGA (-): 684420)
FIGLA (Sequence: TCCAGCTGGA (-): 684489)
Rhox11 (Sequence: CGCTGTTTA (+): 678093)
Rhox11 (Sequence: CGGTGTATT (+): 685014)
POU5F1 (Sequence: ATGCAAA (+): 680363)
POU5F1 (Sequence: ATGCAAA (+): 683093)
POU5F1 (Sequence: ATGCAAA (+): 683916)
POU2F1 (Sequence: TATGTAAAT (+): 680278)
Nobox (Sequence: TAATTACT (+): 678628)
Nobox (Sequence: TAATTGGC (+): 679405)
RHOXF1 (Sequence: AGATCA (-): 677206)
RHOXF1 (Sequence: AGATCA (-): 677986)
RHOXF1 (Sequence: GGATCA (-): 678010)
RHOXF1 (Sequence: GGCTCA (-): 678853)
RHOXF1 (Sequence: GGCTTA (-): 678994)
RHOXF1 (Sequence: GGATCA (-): 679352)
RHOXF1 (Sequence: GGCTCA (-): 680476)
RHOXF1 (Sequence: GGCTTA (-): 681211)
RHOXF1 (Sequence: AGATCA (-): 681937)
RHOXF1 (Sequence: GGATTA (-): 682399)
RHOXF1 (Sequence: AGATCA (-): 683151)
RHOXF1 (Sequence: GGCTCA (-): 683379)
RHOXF1 (Sequence: AGCTTA (-): 683586)
RHOXF1 (Sequence: AGATCA (-): 683618)
RHOXF1 (Sequence: GGCTCA (-): 683818)
FOXO3_mmu (Sequence: TGAAAACA (+): 678609)
FOXO3_mmu (Sequence: GCAAAACA (+): 681899)
RFX4_1 (Sequence: GTTGCCAAG (-): 684068)
Sox5 (Sequence: ATTGTT (+): 678321)
Sox5 (Sequence: ATTGTT (+): 678393)
Sox5 (Sequence: ATTGTT (+): 683550)
Nobox (Sequence: GGCAATTA (-): 679410)
POU2F1 (Sequence: ATTTACATA (-): 683996)
POU5F1 (Sequence: TTTGCAT (-): 677823)
Mybl1_1 (Sequence: TAACGGTT (-): 677644)
Mybl1_1 (Sequence: TAACGGTT (-): 682046)
RHOXF1 (Sequence: TAAGCT (+): 677226)
RHOXF1 (Sequence: TGAGCT (+): 677289)
RHOXF1 (Sequence: TGAGCC (+): 677874)
RHOXF1 (Sequence: TAATCT (+): 678560)
RHOXF1 (Sequence: TAATCT (+): 680648)
RHOXF1 (Sequence: TAAGCC (+): 681838)
RHOXF1 (Sequence: TGAGCT (+): 682177)
RHOXF1 (Sequence: TGAGCC (+): 682642)
RHOXF1 (Sequence: TGAGCC (+): 684286)
RHOXF1 (Sequence: TGATCT (+): 684853)
RHOXF1 (Sequence: TGAGCC (+): 684874)
RHOXF1 (Sequence: TGAGCT (+): 685157)
RHOXF1 (Sequence: TAATCT (+): 685545)
RHOXF1 (Sequence: TAATCT (+): 685649)
Rhox11 (Sequence: AAAACAGCA (-): 683137)
Gata4 (Sequence: AGATAAC (-): 684525)
Sox5 (Sequence: AACAAT (-): 678613)
Sox5 (Sequence: AACAAT (-): 678622)
Sox5 (Sequence: AACAAT (-): 678759)
Sox5 (Sequence: AACAAT (-): 679640)
Sox5 (Sequence: AACAAT (-): 680179)
Sox5 (Sequence: AACAAT (-): 681903)
Sox5 (Sequence: AACAAT (-): 683921)