Predicted piRNA cluster no. 61     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
325052
330714
Gene Set
RepeatMasker
Mapped
Reads
10.21
plus strand
minus strand
10.21
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-432_Dsub: 325011-325118 (-), Divergence to consensus: 20.8%
2. TE-633_Dsub: 325029-325210 (+), Divergence to consensus: 4.4%
3. TE-566_Dsub: 325128-325221 (-), Divergence to consensus: 21.6%
4. TE-610_Dsub: 325209-325260 (-), Divergence to consensus: 3.9%
5. TE-546_Dsub: 325261-325281 (+), Divergence to consensus: 16.7%
6. TE-581_Dsub: 325281-325564 (-), Divergence to consensus: 14.1%
7. TE-236_Dsub: 325565-325659 (+), Divergence to consensus: 12.3%
8. TE-590_Dsub: 325632-326390 (+), Divergence to consensus: 20%
9. CR1-4_Dsub: 326392-327405 (-), Divergence to consensus: 1.2%
10. TE-618_Dsub: 327409-327594 (-), Divergence to consensus: 3.2%
11. TE-640_Dsub: 327570-327729 (+), Divergence to consensus: 9%
12. TE-638_Dsub: 327849-327926 (+), Divergence to consensus: 14.1%
13. HELITRON-2_Dsub: 327929-328773 (+), Divergence to consensus: 3.5%
14. TE-613_Dsub: 329405-329564 (-), Divergence to consensus: 13.5%
15. TE-560_Dsub: 329742-329821 (+), Divergence to consensus: 8.8%
16. TE-304_Dsub: 329790-329834 (-), Divergence to consensus: 13.4%
17. TE-622_Dsub: 329946-329957 (-), Divergence to consensus: 7.9%
18. TE-572_Dsub: 329958-330109 (+), Divergence to consensus: 2.3%
19. TE-622_Dsub: 330110-330640 (-), Divergence to consensus: 7.9%
20. TE-349_Dsub: 330641-330729 (+), Divergence to consensus: 22%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 327686)
Lhx8 (Sequence: TTAATTAG (-): 325851)
Rhox11 (Sequence: CGCTGTTTA (+): 325398)
Rhox11 (Sequence: TGGTGTAAT (+): 327407)
Rhox11 (Sequence: CGCTGTTTA (+): 330460)
FOXO1 (Sequence: GTTGTTTTT (+): 325361)
FOXO1 (Sequence: GCTGTTTAT (+): 325399)
FOXO1 (Sequence: GTTGTTTTT (+): 326170)
FOXO1 (Sequence: GCTGTTTAT (+): 330461)
FOXO3_mmu (Sequence: TGTTTTCA (-): 325794)
FOXO3_mmu (Sequence: TGTTTTCA (-): 327461)
FOXO3_mmu (Sequence: TGTTTTGA (-): 329553)
Nobox (Sequence: TAATTGCT (+): 328878)
RHOXF1 (Sequence: AGCTTA (-): 325848)
RHOXF1 (Sequence: AGATCA (-): 326045)
RHOXF1 (Sequence: GGCTCA (-): 326872)
RHOXF1 (Sequence: AGATCA (-): 327282)
RHOXF1 (Sequence: GGATTA (-): 328556)
RHOXF1 (Sequence: GGATCA (-): 328570)
RHOXF1 (Sequence: AGATCA (-): 330357)
RHOXF1 (Sequence: GGATCA (-): 330381)
FOXO3_mmu (Sequence: TCAAAACA (+): 326307)
FOXO3_mmu (Sequence: TCAAAACA (+): 327433)
FOXO3_mmu (Sequence: TGAAAACA (+): 327755)
FOXO3_mmu (Sequence: TGAAAACA (+): 330223)
Sox5 (Sequence: ATTGTT (+): 327459)
FOXO1 (Sequence: AAAAACAAC (-): 325711)
POU5F1 (Sequence: TTTGCAT (-): 325324)
POU5F1 (Sequence: TTTGCAT (-): 329736)
Mybl1_1 (Sequence: TAACGGTT (-): 325085)
RHOXF1 (Sequence: TAATCC (+): 326757)
RHOXF1 (Sequence: TGAGCC (+): 327110)
RHOXF1 (Sequence: TGAGCC (+): 328317)
RHOXF1 (Sequence: TAAGCC (+): 328461)
RHOXF1 (Sequence: TGAGCT (+): 328739)
RHOXF1 (Sequence: TGAGCC (+): 330100)
RHOXF1 (Sequence: TGAGCC (+): 330245)
Rhox11 (Sequence: ATTACACCA (-): 326925)
Rhox11 (Sequence: TTAACACCA (-): 327273)
Gata4 (Sequence: AGATAAC (-): 330306)
Sox5 (Sequence: AACAAT (-): 327686)
Sox5 (Sequence: AACAAT (-): 327960)
Sox5 (Sequence: AACAAT (-): 328338)
Sox5 (Sequence: AACAAT (-): 329580)