Predicted piRNA cluster no. 64     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
431636
446903
Gene Set
RepeatMasker
Mapped
Reads
12
plus strand
minus strand
12
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00005701) Tr:4: 431823-432383 (-)
2. unknown (unknowndsub_v4_00005702) Tr:4: 437172-437589 (-)
3. unknown (unknowndsub_v4_00005702) Tr:4: 437643-438252 (-)
4. unknown (unknowndsub_v4_00005702) Tr:4 UTR: 438167-438252 (-)
5. unknown (unknowndsub_v4_00005703) Tr:4: 439301-439432 (+)
6. unknown (unknowndsub_v4_00005703) Tr:4: 439508-439599 (+)
7. unknown (unknowndsub_v4_00005703) Tr:4: 441554-441666 (+)
8. unknown (unknowndsub_v4_00005703) Tr:4: 441792-442012 (+)

RepeatMasker Annotation
1. TE-607_Dsub: 432712-433187 (-), Divergence to consensus: 33.2%
2. TE-607_Dsub: 432993-433295 (+), Divergence to consensus: 22.6%
3. TE-640_Dsub: 433314-435309 (+), Divergence to consensus: 5%
4. TE-640_Dsub: 435304-435816 (-), Divergence to consensus: 1.8%
5. TE-613_Dsub: 435481-436014 (-), Divergence to consensus: 9.7%
6. JOCKEY-2_Dsub: 436051-436208 (-), Divergence to consensus: 36.5%
7. TE-640_Dsub: 436069-436404 (-), Divergence to consensus: 8.9%
8. TE-640_Dsub: 436447-436730 (-), Divergence to consensus: 8.8%
9. TE-320_Dsub: 436743-436862 (-), Divergence to consensus: 28%
10. TE-416_Dsub: 436763-436875 (+), Divergence to consensus: 20.7%
11. TE-162_Dsub: 438890-438931 (+), Divergence to consensus: 11.9%
12. TE-22_Dsub: 439049-439059 (+), Divergence to consensus: 22.7%
13. TE-19_Dsub: 439062-439139 (-), Divergence to consensus: 26.5%
14. TE-509_Dsub: 439085-439185 (-), Divergence to consensus: 18.2%
15. TE-642_Dsub: 439140-439150 (-), Divergence to consensus: 30.2%
16. TE-22_Dsub: 439186-439201 (+), Divergence to consensus: 22.7%
17. TE-590_Dsub: 439974-440263 (-), Divergence to consensus: 18%
18. TE-209_Dsub: 440269-440316 (+), Divergence to consensus: 19.1%
19. TE-291_Dsub: 440281-440333 (+), Divergence to consensus: 9.4%
20. TE-622_Dsub: 440284-441033 (+), Divergence to consensus: 11.3%
21. TE-601_Dsub: 440836-441132 (-), Divergence to consensus: 28.2%
22. TE-600_Dsub: 441312-441322 (+), Divergence to consensus: 24.6%
23. TE-96_Dsub: 441330-441375 (+), Divergence to consensus: 11.1%
24. TE-20_Dsub: 441376-441387 (-), Divergence to consensus: 18.9%
25. TE-600_Dsub: 441388-441401 (+), Divergence to consensus: 24.6%
26. TE-557_Dsub: 442043-442061 (-), Divergence to consensus: 37.8%
27. HELITRON-4_Dsub: 442062-442168 (-), Divergence to consensus: 25.6%
28. TE-557_Dsub: 442169-442180 (-), Divergence to consensus: 37.8%
29. CR1-4_Dsub: 442339-444640 (-), Divergence to consensus: 3.4%
30. TE-581_Dsub: 445803-445817 (+), Divergence to consensus: 35%
31. TE-561_Dsub: 445818-445952 (-), Divergence to consensus: 16.5%
32. TE-291_Dsub: 445903-445985 (-), Divergence to consensus: 21.9%
33. TE-581_Dsub: 445953-445975 (+), Divergence to consensus: 35%
34. TE-613_Dsub: 446833-447001 (+), Divergence to consensus: 15.5%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 433425)
SOX9 (Sequence: AACAATAA (-): 436024)
FOXP1 (Sequence: TGTTTAC (-): 444324)
Lhx8 (Sequence: TTAATTAA (-): 441772)
Lhx8 (Sequence: TTAATTAA (-): 442175)
Rhox11 (Sequence: TGGTGTTTT (+): 440281)
Rhox11 (Sequence: TGGTGTTAT (+): 446723)
FOXO1 (Sequence: GTTGTTTTT (+): 435881)
FOXO1 (Sequence: CTTGTTTTC (+): 441287)
POU5F1 (Sequence: ATGCAAA (+): 435451)
POU5F1 (Sequence: ATGCAAA (+): 438566)
FOXO3_mmu (Sequence: TGTTTTCC (-): 436432)
FOXO3_mmu (Sequence: TGTTTTGA (-): 439148)
FOXO3_mmu (Sequence: TGTTTACA (-): 444324)
POU2F1 (Sequence: TATTTAAAT (+): 438864)
POU2F1 (Sequence: TATTTAAAT (+): 445083)
Nobox (Sequence: TAATTAGT (+): 434284)
RHOXF1 (Sequence: AGCTTA (-): 431777)
RHOXF1 (Sequence: GGATCA (-): 434057)
RHOXF1 (Sequence: GGATTA (-): 435149)
RHOXF1 (Sequence: AGATTA (-): 435745)
RHOXF1 (Sequence: GGCTTA (-): 436694)
RHOXF1 (Sequence: AGCTCA (-): 436699)
RHOXF1 (Sequence: GGCTCA (-): 436827)
RHOXF1 (Sequence: GGATTA (-): 437073)
RHOXF1 (Sequence: AGCTCA (-): 437578)
RHOXF1 (Sequence: GGCTTA (-): 437631)
RHOXF1 (Sequence: AGCTCA (-): 437898)
RHOXF1 (Sequence: AGCTCA (-): 438310)
RHOXF1 (Sequence: AGATCA (-): 440265)
RHOXF1 (Sequence: AGATCA (-): 440677)
RHOXF1 (Sequence: GGATCA (-): 440701)
RHOXF1 (Sequence: GGATCA (-): 441620)
RHOXF1 (Sequence: GGATCA (-): 441978)
RHOXF1 (Sequence: GGCTCA (-): 442806)
RHOXF1 (Sequence: AGATCA (-): 443216)
RHOXF1 (Sequence: AGATCA (-): 443375)
RHOXF1 (Sequence: AGCTTA (-): 443426)
RHOXF1 (Sequence: AGATTA (-): 443774)
RHOXF1 (Sequence: AGCTTA (-): 444098)
RHOXF1 (Sequence: AGCTTA (-): 445326)
FOXO3_mmu (Sequence: GGAAAACA (+): 445334)
RFX4_1 (Sequence: GTTGCTATG (-): 446174)
RFX4_1 (Sequence: GTTGCTATG (-): 446580)
Sox5 (Sequence: ATTGTT (+): 431710)
Sox5 (Sequence: ATTGTT (+): 432591)
Sox5 (Sequence: ATTGTT (+): 435769)
Sox5 (Sequence: ATTGTT (+): 438488)
Sox5 (Sequence: ATTGTT (+): 444262)
FOXO1 (Sequence: ATAAACAAC (-): 442009)
FOXO1 (Sequence: GAAAACAAC (-): 445335)
Nobox (Sequence: AGTAATTA (-): 444438)
Nobox (Sequence: ACCAATTA (-): 444979)
POU2F1 (Sequence: ATTTAAATA (-): 438865)
POU2F1 (Sequence: ATTAGAATA (-): 439622)
POU2F1 (Sequence: ATTAAAATA (-): 444654)
SOX9 (Sequence: TCATTGTT (+): 444260)
POU5F1 (Sequence: TTTGCAT (-): 432937)
POU5F1 (Sequence: TTTGCAT (-): 436282)
POU5F1 (Sequence: TTTGCAT (-): 437411)
POU5F1 (Sequence: TTTGCAT (-): 440509)
POU5F1 (Sequence: TTTGCAT (-): 441078)
Mybl1_1 (Sequence: TAACGGTT (-): 440338)
A-MYB (Sequence: CCAACTGTCT (-): 439235)
RHOXF1 (Sequence: TAATCC (+): 432735)
RHOXF1 (Sequence: TGATCT (+): 432861)
RHOXF1 (Sequence: TGATCC (+): 433694)
RHOXF1 (Sequence: TGATCC (+): 433788)
RHOXF1 (Sequence: TAAGCT (+): 435577)
RHOXF1 (Sequence: TAAGCT (+): 436158)
RHOXF1 (Sequence: TAATCT (+): 436535)
RHOXF1 (Sequence: TGATCC (+): 437874)
RHOXF1 (Sequence: TGAGCT (+): 437959)
RHOXF1 (Sequence: TAAGCT (+): 438934)
RHOXF1 (Sequence: TAATCT (+): 438988)
RHOXF1 (Sequence: TGAGCT (+): 439256)
RHOXF1 (Sequence: TGAGCC (+): 440560)
RHOXF1 (Sequence: TAAGCC (+): 441038)
RHOXF1 (Sequence: TGAGCC (+): 443044)
RHOXF1 (Sequence: TGAGCT (+): 443813)
Rhox11 (Sequence: TTAACACCA (-): 443207)
Rhox11 (Sequence: TTAACAGCA (-): 445239)
Gata4 (Sequence: AGATAAG (-): 443560)
Gata4 (Sequence: AGATAAG (-): 446771)
Gata4 (Sequence: CTTATCT (+): 432202)
Gata4 (Sequence: CTTATCT (+): 438992)
Gata4 (Sequence: CTTATCT (+): 441640)
Sox5 (Sequence: AACAAT (-): 433425)
Sox5 (Sequence: AACAAT (-): 434611)
Sox5 (Sequence: AACAAT (-): 434963)
Sox5 (Sequence: AACAAT (-): 436024)
Sox5 (Sequence: AACAAT (-): 437088)
Sox5 (Sequence: AACAAT (-): 446650)