Predicted piRNA cluster no. 1     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
cDot_v4 
1
15024
Gene Set
RepeatMasker
Mapped
Reads
801.55
plus strand
minus strand
801.55
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-549_Dsub: 1-1546 (+), Divergence to consensus: 0.5%
2. TE-549_Dsub: 5092-5724 (+), Divergence to consensus: 1.7%
3. TE-549_Dsub: 13150-13782 (+), Divergence to consensus: 1.7%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAA (-): 1090)
FIGLA (Sequence: TCCAGCTGGA (-): 6967)
Rhox11 (Sequence: CGCTGTTTT (+): 2668)
Rhox11 (Sequence: TGCTGTTTT (+): 5482)
Rhox11 (Sequence: TGCTGTTTT (+): 13540)
FOXP1 (Sequence: GTAAACA (+): 7533)
FOXP1 (Sequence: GTAAACA (+): 8348)
FOXO1 (Sequence: GCTGTTTTT (+): 2669)
FOXO1 (Sequence: GCTGTTTTC (+): 5483)
FOXO1 (Sequence: GCTGTTTTC (+): 13541)
POU5F1 (Sequence: ATGCAAA (+): 2984)
POU5F1 (Sequence: ATGCAAA (+): 3558)
POU5F1 (Sequence: ATGCAAA (+): 4096)
POU5F1 (Sequence: ATGCAAA (+): 6151)
POU5F1 (Sequence: ATGCAAA (+): 10496)
POU5F1 (Sequence: ATGCAAA (+): 10868)
POU5F1 (Sequence: ATGCAAA (+): 11042)
POU5F1 (Sequence: ATGCAAA (+): 11616)
POU5F1 (Sequence: ATGCAAA (+): 12154)
POU5F1 (Sequence: ATGCAAA (+): 14209)
FOXO3_mmu (Sequence: TGTTTTCA (-): 5485)
FOXO3_mmu (Sequence: TGTTTTCA (-): 13543)
RHOXF1 (Sequence: AGCTCA (-): 1839)
RHOXF1 (Sequence: GGATCA (-): 2437)
RHOXF1 (Sequence: AGCTTA (-): 2747)
RHOXF1 (Sequence: GGATCA (-): 3052)
RHOXF1 (Sequence: GGATTA (-): 3062)
RHOXF1 (Sequence: GGCTCA (-): 4031)
RHOXF1 (Sequence: AGATCA (-): 4091)
RHOXF1 (Sequence: AGCTCA (-): 4587)
RHOXF1 (Sequence: AGATTA (-): 4754)
RHOXF1 (Sequence: AGATTA (-): 4767)
RHOXF1 (Sequence: GGCTCA (-): 5276)
RHOXF1 (Sequence: AGATCA (-): 5603)
RHOXF1 (Sequence: AGATTA (-): 5764)
RHOXF1 (Sequence: GGATCA (-): 6117)
RHOXF1 (Sequence: AGCTCA (-): 6420)
RHOXF1 (Sequence: GGATTA (-): 6423)
RHOXF1 (Sequence: GGCTCA (-): 9532)
RHOXF1 (Sequence: GGATCA (-): 11110)
RHOXF1 (Sequence: GGATTA (-): 11120)
RHOXF1 (Sequence: GGCTCA (-): 12089)
RHOXF1 (Sequence: AGATCA (-): 12149)
RHOXF1 (Sequence: AGCTCA (-): 12645)
RHOXF1 (Sequence: AGATTA (-): 12812)
RHOXF1 (Sequence: AGATTA (-): 12825)
RHOXF1 (Sequence: GGCTCA (-): 13334)
RHOXF1 (Sequence: AGATCA (-): 13661)
RHOXF1 (Sequence: AGATTA (-): 13822)
RHOXF1 (Sequence: GGATCA (-): 14175)
RHOXF1 (Sequence: AGCTCA (-): 14478)
RHOXF1 (Sequence: GGATTA (-): 14481)
FOXO3_mmu (Sequence: GCAAAACA (+): 1328)
FOXO3_mmu (Sequence: TCAAAACA (+): 4468)
FOXO3_mmu (Sequence: GGAAAACA (+): 7431)
FOXO3_mmu (Sequence: TGTAAACA (+): 7532)
FOXO3_mmu (Sequence: GGAAAACA (+): 8246)
FOXO3_mmu (Sequence: TGTAAACA (+): 8347)
FOXO3_mmu (Sequence: TCTAAACA (+): 10164)
FOXO3_mmu (Sequence: TCAAAACA (+): 12526)
Sox5 (Sequence: ATTGTT (+): 1120)
Sox5 (Sequence: ATTGTT (+): 1713)
Sox5 (Sequence: ATTGTT (+): 1737)
Sox5 (Sequence: ATTGTT (+): 1853)
Sox5 (Sequence: ATTGTT (+): 8853)
FOXO1 (Sequence: AAAAACAAC (-): 2899)
FOXO1 (Sequence: AAAAACAAC (-): 5463)
FOXO1 (Sequence: AAAAACAGC (-): 7468)
FOXO1 (Sequence: AAAAACAGC (-): 8283)
FOXO1 (Sequence: AAAAACAAC (-): 10957)
FOXO1 (Sequence: AAAAACAAC (-): 13521)
Nobox (Sequence: GCCAATTA (-): 1787)
Nobox (Sequence: AGCAATTA (-): 5155)
Nobox (Sequence: ACCAATTA (-): 5287)
Nobox (Sequence: AGCAATTA (-): 13213)
Nobox (Sequence: ACCAATTA (-): 13345)
POU2F1 (Sequence: ATTTAAATA (-): 2688)
POU5F1 (Sequence: TTTGCAT (-): 1616)
POU5F1 (Sequence: TTTGCAT (-): 1698)
RHOXF1 (Sequence: TAATCC (+): 870)
RHOXF1 (Sequence: TAAGCT (+): 1837)
RHOXF1 (Sequence: TAATCC (+): 1925)
RHOXF1 (Sequence: TAAGCC (+): 2529)
RHOXF1 (Sequence: TAAGCC (+): 3338)
RHOXF1 (Sequence: TGATCT (+): 3571)
RHOXF1 (Sequence: TAATCT (+): 4408)
RHOXF1 (Sequence: TAATCC (+): 6558)
RHOXF1 (Sequence: TGAGCT (+): 6823)
RHOXF1 (Sequence: TAATCT (+): 7462)
RHOXF1 (Sequence: TAATCT (+): 8277)
RHOXF1 (Sequence: TAATCC (+): 9212)
RHOXF1 (Sequence: TAATCC (+): 9338)
RHOXF1 (Sequence: TGAGCT (+): 10395)
RHOXF1 (Sequence: TAAGCC (+): 11396)
RHOXF1 (Sequence: TGATCT (+): 11629)
RHOXF1 (Sequence: TAATCT (+): 12466)
RHOXF1 (Sequence: TAATCC (+): 14616)
RHOXF1 (Sequence: TGAGCT (+): 14881)
Rhox11 (Sequence: AAAACAGCA (-): 1330)
Rhox11 (Sequence: AAAACAGCA (-): 7469)
Rhox11 (Sequence: AAAACAGCA (-): 8284)
FOXO3_hsa (Sequence: GTAAACAA (+): 7533)
FOXO3_hsa (Sequence: GTAAACAA (+): 8348)
Gata4 (Sequence: CTTATCT (+): 1176)
Gata4 (Sequence: GTTATCT (+): 5589)
Gata4 (Sequence: GTTATCT (+): 13647)
Sox5 (Sequence: AACAAT (-): 1090)
Sox5 (Sequence: AACAAT (-): 1748)
Sox5 (Sequence: AACAAT (-): 1769)
Sox5 (Sequence: AACAAT (-): 2377)
Sox5 (Sequence: AACAAT (-): 4264)
Sox5 (Sequence: AACAAT (-): 4361)
Sox5 (Sequence: AACAAT (-): 7540)
Sox5 (Sequence: AACAAT (-): 8355)
Sox5 (Sequence: AACAAT (-): 12322)
Sox5 (Sequence: AACAAT (-): 12419)