Predicted piRNA cluster no. 106     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
2262071
2272021
Gene Set
RepeatMasker
Mapped
Reads
31.03
plus strand
minus strand
31.03
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. BEL-3_Dsub: 2261884-2262119 (+), Divergence to consensus: 43.4%
2. BEL-3_Dsub: 2262166-2262290 (+), Divergence to consensus: 37.3%
3. BEL-3_Dsub: 2262615-2262740 (+), Divergence to consensus: 29.8%
4. BILBO-1_Dsub: 2265227-2265341 (+), Divergence to consensus: 34.9%
5. LOA-1_Dsub: 2265841-2265976 (+), Divergence to consensus: 12.5%
6. LOA-1_Dsub: 2265992-2266071 (+), Divergence to consensus: 13.8%
7. LOA-1_Dsub: 2266068-2266144 (+), Divergence to consensus: 18.1%
8. TE-613_Dsub: 2266285-2266823 (+), Divergence to consensus: 25.1%
9. TE-640_Dsub: 2266543-2268321 (-), Divergence to consensus: 6.8%
10. TE-601_Dsub: 2268340-2268717 (+), Divergence to consensus: 33.1%
11. TE-392_Dsub: 2268670-2268730 (-), Divergence to consensus: 14%
12. TE-613_Dsub: 2268938-2269022 (-), Divergence to consensus: 30.6%
13. TE-588_Dsub: 2269103-2269290 (+), Divergence to consensus: 43.1%
14. TE-456_Dsub: 2269290-2269451 (-), Divergence to consensus: 13.2%
15. HELITRON-5_Dsub: 2269629-2269771 (-), Divergence to consensus: 16.2%
16. HELITRON-5_Dsub: 2269787-2269908 (-), Divergence to consensus: 14.8%
17. TE-171_Dsub: 2269891-2269913 (+), Divergence to consensus: 22.5%
18. TE-553_Dsub: 2269914-2270002 (-), Divergence to consensus: 30.6%
19. TE-642_Dsub: 2269916-2270016 (-), Divergence to consensus: 31.8%
20. HELITRON-3_Dsub: 2269928-2270027 (-), Divergence to consensus: 30.2%
21. HELITRON-5_Dsub: 2270080-2270187 (-), Divergence to consensus: 42.6%
22. TE-613_Dsub: 2270356-2270894 (+), Divergence to consensus: 25.3%
23. TE-640_Dsub: 2270614-2272353 (-), Divergence to consensus: 9.4%

Transcription Factor Binding Sites
RFX4_2 (Sequence: CCTAGATAC (+): 2264590)
Lhx8 (Sequence: TTAATTAA (-): 2269841)
FOXO3_mmu (Sequence: TGTTTTGC (-): 2269755)
Nobox (Sequence: TAATTACT (+): 2269307)
RHOXF1 (Sequence: AGATCA (-): 2262173)
RHOXF1 (Sequence: AGCTTA (-): 2262386)
RHOXF1 (Sequence: AGCTCA (-): 2262584)
RHOXF1 (Sequence: GGATCA (-): 2262906)
RHOXF1 (Sequence: GGCTCA (-): 2263510)
RHOXF1 (Sequence: AGCTCA (-): 2263881)
RHOXF1 (Sequence: GGATTA (-): 2264751)
RHOXF1 (Sequence: AGCTTA (-): 2265732)
RHOXF1 (Sequence: GGCTTA (-): 2266069)
RHOXF1 (Sequence: AGCTTA (-): 2266736)
RHOXF1 (Sequence: AGCTTA (-): 2267186)
RHOXF1 (Sequence: GGATCA (-): 2267872)
RHOXF1 (Sequence: GGATCA (-): 2267938)
RHOXF1 (Sequence: AGATCA (-): 2269657)
RHOXF1 (Sequence: AGCTTA (-): 2270807)
RHOXF1 (Sequence: AGCTTA (-): 2271257)
RHOXF1 (Sequence: GGATTA (-): 2271950)
RHOXF1 (Sequence: GGATCA (-): 2272010)
Sox5 (Sequence: ATTGTT (+): 2267047)
Sox5 (Sequence: ATTGTT (+): 2268212)
Sox5 (Sequence: ATTGTT (+): 2268957)
Sox5 (Sequence: ATTGTT (+): 2269735)
Sox5 (Sequence: ATTGTT (+): 2269753)
Sox5 (Sequence: ATTGTT (+): 2270310)
Sox5 (Sequence: ATTGTT (+): 2271118)
FOXO1 (Sequence: AAAAACAAC (-): 2266408)
FOXO1 (Sequence: AAAAACAAC (-): 2270479)
Nobox (Sequence: GCCAATTA (-): 2262810)
Nobox (Sequence: ACTAATTA (-): 2267374)
Nobox (Sequence: ACTAATTA (-): 2271445)
POU2F1 (Sequence: ATTAAAATA (-): 2269156)
POU2F1 (Sequence: ATTTAAATA (-): 2269564)
SOX9 (Sequence: TCATTGTT (+): 2268210)
POU5F1 (Sequence: TTTGCAT (-): 2266861)
POU5F1 (Sequence: TTTGCAT (-): 2270932)
RFX4_1 (Sequence: CCTAGCAAC (+): 2264824)
RFX4_1 (Sequence: CTTAGCAAC (+): 2265821)
RHOXF1 (Sequence: TGAGCC (+): 2262475)
RHOXF1 (Sequence: TGATCC (+): 2262550)
RHOXF1 (Sequence: TGATCC (+): 2263012)
RHOXF1 (Sequence: TAAGCT (+): 2265730)
RHOXF1 (Sequence: TAAGCT (+): 2265746)
RHOXF1 (Sequence: TAAGCT (+): 2265890)
RHOXF1 (Sequence: TAATCT (+): 2266604)
RHOXF1 (Sequence: TGATCC (+): 2268359)
RHOXF1 (Sequence: TAATCC (+): 2268369)
RHOXF1 (Sequence: TGATCT (+): 2268383)
RHOXF1 (Sequence: TAATCT (+): 2268813)
RHOXF1 (Sequence: TGAGCC (+): 2268883)
RHOXF1 (Sequence: TAATCT (+): 2268949)
RHOXF1 (Sequence: TGATCC (+): 2270044)
RHOXF1 (Sequence: TAATCT (+): 2270675)
RHOXF1 (Sequence: TGATCC (+): 2271674)
RFX4_2 (Sequence: GTATCCAAG (-): 2264600)
Gata4 (Sequence: GTTATCT (+): 2270244)
Sox5 (Sequence: AACAAT (-): 2266580)
Sox5 (Sequence: AACAAT (-): 2268669)
Sox5 (Sequence: AACAAT (-): 2269129)
Sox5 (Sequence: AACAAT (-): 2270341)
Sox5 (Sequence: AACAAT (-): 2270651)