Predicted piRNA cluster no. 87     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
21664011
21672479
Gene Set
RepeatMasker
Mapped
Reads
14.04
plus strand
minus strand
14.04
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-621_Dsub: 21663641-21672058 (-), Divergence to consensus: 0%
2. TE-576_Dsub: 21672022-21672058 (-), Divergence to consensus: 2.1%
3. GYPSY-20_Dsub: 21672059-21672494 (-), Divergence to consensus: 0.2%

Transcription Factor Binding Sites
FOXP1 (Sequence: TGTTTAC (-): 21667031)
FOXP1 (Sequence: TGTTTAC (-): 21668942)
FIGLA (Sequence: TACAGGTGTA (-): 21666415)
Lhx8 (Sequence: TTAATTAA (-): 21668599)
Rhox11 (Sequence: TGCTGTTAT (+): 21669424)
Rhox11 (Sequence: CGCTGTTAT (+): 21669974)
FOXP1 (Sequence: GTAAACA (+): 21666605)
FOXO1 (Sequence: GTTGTTTTC (+): 21664023)
FOXO3_mmu (Sequence: TGTTTTCA (-): 21664025)
FOXO3_mmu (Sequence: TGTTTTCC (-): 21667268)
FOXO3_mmu (Sequence: TGTTTTCC (-): 21669139)
POU2F1 (Sequence: TATTTAAAT (+): 21665041)
Nobox (Sequence: TAATTGCC (+): 21667299)
Nobox (Sequence: TAATTGGT (+): 21668604)
Nobox (Sequence: TAATTACC (+): 21669357)
RHOXF1 (Sequence: AGCTTA (-): 21664241)
RHOXF1 (Sequence: AGATTA (-): 21666330)
RHOXF1 (Sequence: AGATCA (-): 21668869)
RHOXF1 (Sequence: AGCTTA (-): 21670949)
RHOXF1 (Sequence: GGCTTA (-): 21671150)
RHOXF1 (Sequence: GGCTCA (-): 21671767)
RHOXF1 (Sequence: GGATTA (-): 21671950)
RHOXF1 (Sequence: GGATCA (-): 21672290)
FOXO3_mmu (Sequence: TGAAAACA (+): 21665240)
FOXO3_mmu (Sequence: TGTAAACA (+): 21666604)
Sox5 (Sequence: ATTGTT (+): 21665059)
Sox5 (Sequence: ATTGTT (+): 21665205)
Sox5 (Sequence: ATTGTT (+): 21665651)
Sox5 (Sequence: ATTGTT (+): 21666431)
Sox5 (Sequence: ATTGTT (+): 21667064)
Sox5 (Sequence: ATTGTT (+): 21668781)
Sox5 (Sequence: ATTGTT (+): 21668829)
Sox5 (Sequence: ATTGTT (+): 21669156)
Sox5 (Sequence: ATTGTT (+): 21669278)
Sox5 (Sequence: ATTGTT (+): 21669392)
Sox5 (Sequence: ATTGTT (+): 21669864)
FOXO1 (Sequence: GAAAACAAC (-): 21665241)
POU2F1 (Sequence: ATTTAAATA (-): 21664223)
POU2F1 (Sequence: ATTAGCATA (-): 21664590)
POU2F1 (Sequence: ATTTACATA (-): 21666162)
SOX9 (Sequence: TTATTGTT (+): 21666429)
SOX9 (Sequence: TTATTGTT (+): 21669276)
SOX9 (Sequence: TTATTGTT (+): 21669862)
POU5F1 (Sequence: TTTGCAT (-): 21665389)
POU5F1 (Sequence: TTTGCAT (-): 21671390)
RHOXF1 (Sequence: TAAGCT (+): 21665026)
RHOXF1 (Sequence: TAAGCT (+): 21665843)
RHOXF1 (Sequence: TAATCT (+): 21665879)
RHOXF1 (Sequence: TGATCT (+): 21666364)
RHOXF1 (Sequence: TGAGCT (+): 21667204)
RHOXF1 (Sequence: TGATCT (+): 21667366)
RHOXF1 (Sequence: TAATCT (+): 21667579)
RHOXF1 (Sequence: TGAGCC (+): 21668001)
RHOXF1 (Sequence: TGATCC (+): 21668113)
RHOXF1 (Sequence: TGAGCT (+): 21668507)
RHOXF1 (Sequence: TGAGCT (+): 21668512)
RHOXF1 (Sequence: TGATCT (+): 21668757)
RHOXF1 (Sequence: TAAGCT (+): 21669492)
RHOXF1 (Sequence: TGATCC (+): 21669896)
RHOXF1 (Sequence: TAATCT (+): 21669904)
RHOXF1 (Sequence: TGATCT (+): 21670134)
RFX4_2 (Sequence: GTAACCACG (-): 21669437)
FOXO3_hsa (Sequence: TTGTTTAC (-): 21668941)
Gata4 (Sequence: CTTATCT (+): 21665746)
Sox5 (Sequence: AACAAT (-): 21664062)
Sox5 (Sequence: AACAAT (-): 21664208)
Sox5 (Sequence: AACAAT (-): 21670990)