Predicted piRNA cluster no. 71     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
868910
882569
Gene Set
RepeatMasker
Mapped
Reads
13.63
plus strand
minus strand
13.63
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00005717) Tr:4: 876452-876664 (+)
2. unknown (unknowndsub_v4_00005717) Tr:4: 876731-877186 (+)
3. unknown (unknowndsub_v4_00005717) Tr:4: 876452-877186 (+)
4. unknown (unknowndsub_v4_00005718) Tr:4: 882437-882581 (+)

RepeatMasker Annotation
1. P-1_Dsub: 868902-869249 (+), Divergence to consensus: 21.3%
2. TE-209_Dsub: 869456-869554 (-), Divergence to consensus: 31%
3. TE-560_Dsub: 869780-870564 (+), Divergence to consensus: 18%
4. TE-223_Dsub: 870463-870601 (-), Divergence to consensus: 18.7%
5. TE-462_Dsub: 872013-872740 (-), Divergence to consensus: 14.4%
6. TE-284_Dsub: 872811-872875 (+), Divergence to consensus: 16.1%
7. TE-462_Dsub: 872866-873134 (-), Divergence to consensus: 24%
8. TE-537_Dsub: 873143-873466 (+), Divergence to consensus: 12%
9. TE-543_Dsub: 873467-873683 (-), Divergence to consensus: 2.3%
10. GYPSY-13_Dsub: 873685-873973 (+), Divergence to consensus: 21.3%
11. GYPSY-13_Dsub: 873974-875245 (+), Divergence to consensus: 14.1%
12. TE-537_Dsub: 875318-875590 (+), Divergence to consensus: 8.4%
13. TE-605_Dsub: 875592-875628 (+), Divergence to consensus: 10.8%
14. TE-645_Dsub: 875648-875755 (+), Divergence to consensus: 23.1%
15. TE-456_Dsub: 875773-875976 (-), Divergence to consensus: 6%
16. TE-645_Dsub: 875937-876131 (+), Divergence to consensus: 14.2%
17. TE-456_Dsub: 876143-876305 (+), Divergence to consensus: 1.2%
18. TE-456_Dsub: 876322-876407 (+), Divergence to consensus: 25.4%
19. TE-557_Dsub: 877560-877627 (+), Divergence to consensus: 15.4%
20. TE-454_Dsub: 877740-878119 (-), Divergence to consensus: 22.5%
21. TE-524_Dsub: 878143-878364 (+), Divergence to consensus: 13.5%
22. TE-566_Dsub: 878323-878557 (+), Divergence to consensus: 30.8%
23. TE-560_Dsub: 878358-878678 (-), Divergence to consensus: 15.6%
24. BILBO-1_Dsub: 878676-880041 (-), Divergence to consensus: 23.2%
25. TE-581_Dsub: 880040-880621 (-), Divergence to consensus: 17.1%
26. TE-586_Dsub: 881142-881583 (+), Divergence to consensus: 24.6%
27. TE-565_Dsub: 881584-881827 (-), Divergence to consensus: 15.1%
28. TE-586_Dsub: 881828-881858 (+), Divergence to consensus: 24.6%
29. TE-592_Dsub: 881963-882312 (+), Divergence to consensus: 30.2%

Transcription Factor Binding Sites
FIGLA (Sequence: ACCAGCTGGA (-): 872133)
Lhx8 (Sequence: TTAATTAA (-): 873243)
FOXP1 (Sequence: GTAAACA (+): 873100)
FOXP1 (Sequence: GTAAACA (+): 873678)
POU5F1 (Sequence: ATGCAAA (+): 881615)
FOXO3_mmu (Sequence: TGTTTTGC (-): 871209)
FOXO3_mmu (Sequence: TGTTTTGC (-): 876877)
FOXO3_mmu (Sequence: TGTTTTGA (-): 877126)
RHOXF1 (Sequence: AGATTA (-): 869540)
RHOXF1 (Sequence: GGATCA (-): 870207)
RHOXF1 (Sequence: GGATCA (-): 870217)
RHOXF1 (Sequence: GGATCA (-): 870571)
RHOXF1 (Sequence: AGCTCA (-): 871767)
RHOXF1 (Sequence: AGCTCA (-): 872547)
RHOXF1 (Sequence: AGATCA (-): 872616)
RHOXF1 (Sequence: GGATTA (-): 873444)
RHOXF1 (Sequence: GGATCA (-): 873705)
RHOXF1 (Sequence: GGCTCA (-): 873725)
RHOXF1 (Sequence: AGCTCA (-): 874637)
RHOXF1 (Sequence: AGATTA (-): 876383)
RHOXF1 (Sequence: AGATCA (-): 876516)
RHOXF1 (Sequence: AGATCA (-): 876688)
RHOXF1 (Sequence: GGATCA (-): 876901)
RHOXF1 (Sequence: AGCTCA (-): 877794)
RHOXF1 (Sequence: GGATTA (-): 879689)
RHOXF1 (Sequence: AGATCA (-): 880209)
RHOXF1 (Sequence: GGATCA (-): 880233)
RHOXF1 (Sequence: AGCTTA (-): 880296)
RHOXF1 (Sequence: GGCTTA (-): 880899)
RHOXF1 (Sequence: GGATTA (-): 882121)
RHOXF1 (Sequence: AGATTA (-): 882205)
FOXO3_mmu (Sequence: GGAAAACA (+): 872116)
FOXO3_mmu (Sequence: TGTAAACA (+): 873099)
FOXO3_mmu (Sequence: TCAAAACA (+): 876116)
Sox5 (Sequence: ATTGTT (+): 869049)
Sox5 (Sequence: ATTGTT (+): 870774)
Sox5 (Sequence: ATTGTT (+): 872332)
Sox5 (Sequence: ATTGTT (+): 875608)
Sox5 (Sequence: ATTGTT (+): 876476)
Sox5 (Sequence: ATTGTT (+): 877124)
FOXO1 (Sequence: GAAAACAGG (-): 872117)
Nobox (Sequence: GGCAATTA (-): 881085)
POU2F1 (Sequence: ATTTACATA (-): 878271)
SOX9 (Sequence: TCATTGTT (+): 875606)
POU5F1 (Sequence: TTTGCAT (-): 869622)
POU5F1 (Sequence: TTTGCAT (-): 879013)
POU5F1 (Sequence: TTTGCAT (-): 879084)
POU5F1 (Sequence: TTTGCAT (-): 880063)
RHOXF1 (Sequence: TAAGCC (+): 869481)
RHOXF1 (Sequence: TGATCC (+): 869709)
RHOXF1 (Sequence: TGATCC (+): 869793)
RHOXF1 (Sequence: TGAGCC (+): 870074)
RHOXF1 (Sequence: TAATCT (+): 871354)
RHOXF1 (Sequence: TAATCC (+): 871907)
RHOXF1 (Sequence: TGATCT (+): 871919)
RHOXF1 (Sequence: TGATCC (+): 871932)
RHOXF1 (Sequence: TGAGCC (+): 872273)
RHOXF1 (Sequence: TAAGCC (+): 873655)
RHOXF1 (Sequence: TGATCC (+): 874410)
RHOXF1 (Sequence: TAAGCT (+): 874556)
RHOXF1 (Sequence: TAAGCT (+): 874717)
RHOXF1 (Sequence: TGATCC (+): 875137)
RHOXF1 (Sequence: TGATCT (+): 875891)
RHOXF1 (Sequence: TAAGCC (+): 876970)
RHOXF1 (Sequence: TGAGCT (+): 877792)
RHOXF1 (Sequence: TAAGCT (+): 878653)
RHOXF1 (Sequence: TGAGCC (+): 878886)
RHOXF1 (Sequence: TGAGCT (+): 879203)
RHOXF1 (Sequence: TGAGCT (+): 880034)
RHOXF1 (Sequence: TGAGCC (+): 880114)
RHOXF1 (Sequence: TAAGCT (+): 880800)
RHOXF1 (Sequence: TGAGCC (+): 881153)
RHOXF1 (Sequence: TAAGCT (+): 881443)
RHOXF1 (Sequence: TGATCT (+): 881530)
RHOXF1 (Sequence: TAATCT (+): 882447)
FOXO3_hsa (Sequence: GTAAACAT (+): 873100)
FOXO3_hsa (Sequence: GTAAACAA (+): 873678)
Gata4 (Sequence: AGATAAG (-): 870941)
Gata4 (Sequence: CTTATCT (+): 870802)
Gata4 (Sequence: GTTATCT (+): 880865)
Sox5 (Sequence: AACAAT (-): 873588)
Sox5 (Sequence: AACAAT (-): 873681)
Sox5 (Sequence: AACAAT (-): 880610)