Predicted piRNA cluster no. 21     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrA_v4 
12711659
12721985
Gene Set
RepeatMasker
Mapped
Reads
23.28
plus strand
minus strand
23.28
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00009485) Tr:4: 12714645-12714676 (-)
2. unknown (unknowndsub_v4_00009485) Tr:4: 12712761-12714360 (-)
3. unknown (unknowndsub_v4_00009485) Tr:4: 12710065-12712694 (-)

RepeatMasker Annotation
1. TE-469_Dsub: 12712226-12712273 (+), Divergence to consensus: 4.2%
2. TE-442_Dsub: 12712389-12712510 (-), Divergence to consensus: 26.5%
3. TE-497_Dsub: 12712418-12712538 (+), Divergence to consensus: 35.5%
4. JOCKEY-3_Dsub: 12712784-12712903 (+), Divergence to consensus: 30.8%
5. TE-486_Dsub: 12713006-12713037 (+), Divergence to consensus: 38.3%
6. TE-442_Dsub: 12713038-12713465 (-), Divergence to consensus: 20.5%
7. JOCKEY-3_Dsub: 12713065-12713280 (+), Divergence to consensus: 36.7%
8. JOCKEY-4_Dsub: 12713281-12713497 (-), Divergence to consensus: 36.6%
9. TE-486_Dsub: 12713466-12713507 (+), Divergence to consensus: 38.3%
10. JOCKEY-3_Dsub: 12713498-12713684 (+), Divergence to consensus: 36.7%
11. TE-527_Dsub: 12713641-12713690 (-), Divergence to consensus: 8%
12. TE-486_Dsub: 12714056-12714233 (+), Divergence to consensus: 30.3%
13. TE-497_Dsub: 12714063-12714159 (+), Divergence to consensus: 39.6%
14. TE-442_Dsub: 12714160-12714352 (-), Divergence to consensus: 25.6%
15. TE-437_Dsub: 12714618-12714977 (+), Divergence to consensus: 0.8%
16. GYPSY-11_Dsub: 12714978-12716558 (+), Divergence to consensus: 3.2%
17. GYPSY-11_Dsub: 12716640-12717775 (+), Divergence to consensus: 0.3%
18. TE-437_Dsub: 12717777-12718140 (+), Divergence to consensus: 0.8%

Transcription Factor Binding Sites
FOXO1 (Sequence: GCTGTTTTC (+): 12721900)
POU5F1 (Sequence: ATGCAAA (+): 12715314)
POU5F1 (Sequence: ATGCAAA (+): 12719773)
FOXO3_mmu (Sequence: TGTTTTCA (-): 12714904)
FOXO3_mmu (Sequence: TGTTTAGA (-): 12716648)
FOXO3_mmu (Sequence: TGTTTTCA (-): 12718063)
POU2F1 (Sequence: TATTTAAAT (+): 12718397)
Nobox (Sequence: TAATTGGC (+): 12718807)
RHOXF1 (Sequence: AGATTA (-): 12714404)
RHOXF1 (Sequence: AGCTTA (-): 12714429)
RHOXF1 (Sequence: AGCTTA (-): 12717108)
RHOXF1 (Sequence: GGATCA (-): 12717373)
RHOXF1 (Sequence: AGCTCA (-): 12717756)
RHOXF1 (Sequence: GGATTA (-): 12718497)
RHOXF1 (Sequence: GGATTA (-): 12718756)
RHOXF1 (Sequence: AGCTTA (-): 12719860)
RHOXF1 (Sequence: GGATCA (-): 12721894)
FOXO3_mmu (Sequence: GGAAAACA (+): 12714394)
FOXO3_mmu (Sequence: TGAAAACA (+): 12720151)
Sox5 (Sequence: ATTGTT (+): 12718417)
FOXO1 (Sequence: GAAAACAAC (-): 12714395)
FOXO1 (Sequence: AAAAACAGG (-): 12717496)
FOXO1 (Sequence: AAAAACAAC (-): 12721051)
Nobox (Sequence: GGCAATTA (-): 12715233)
Mybl1_1 (Sequence: TAACGGTT (-): 12714579)
RHOXF1 (Sequence: TGATCT (+): 12711878)
RHOXF1 (Sequence: TGATCC (+): 12712060)
RHOXF1 (Sequence: TGATCT (+): 12712115)
RHOXF1 (Sequence: TGAGCT (+): 12712495)
RHOXF1 (Sequence: TGATCT (+): 12712583)
RHOXF1 (Sequence: TAATCC (+): 12715756)
RHOXF1 (Sequence: TAATCC (+): 12716861)
RHOXF1 (Sequence: TAAGCC (+): 12717011)
RHOXF1 (Sequence: TAAGCT (+): 12720079)
Rhox11 (Sequence: AAAACACCG (-): 12715694)
Sox5 (Sequence: AACAAT (-): 12715206)
Sox5 (Sequence: AACAAT (-): 12715211)