Predicted piRNA cluster no. 63     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrJ_v4 
424084
430018
Gene Set
RepeatMasker
Mapped
Reads
2.64
plus strand
minus strand
2.64
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-640_Dsub: 424054-425814 (+), Divergence to consensus: 2.8%
2. HELITRON-2_Dsub: 425812-426098 (+), Divergence to consensus: 2.4%
3. TE-588_Dsub: 426344-426717 (+), Divergence to consensus: 12%
4. TE-395_Dsub: 426694-426727 (+), Divergence to consensus: 8.8%
5. TE-615_Dsub: 426707-427051 (+), Divergence to consensus: 11%
6. TE-580_Dsub: 427049-427168 (+), Divergence to consensus: 15.9%
7. TE-462_Dsub: 427203-427651 (-), Divergence to consensus: 27.7%
8. TE-462_Dsub: 427656-427826 (-), Divergence to consensus: 17.2%
9. TE-537_Dsub: 427784-427981 (+), Divergence to consensus: 8.1%
10. TE-580_Dsub: 427983-428287 (+), Divergence to consensus: 11.3%
11. TE-588_Dsub: 428273-428867 (-), Divergence to consensus: 16.9%
12. TE-395_Dsub: 428824-428876 (+), Divergence to consensus: 3.8%
13. TE-395_Dsub: 428898-429162 (+), Divergence to consensus: 6%
14. TE-640_Dsub: 428946-429433 (-), Divergence to consensus: 2.7%
15. TE-580_Dsub: 429418-429910 (+), Divergence to consensus: 29%
16. TE-581_Dsub: 429888-429966 (+), Divergence to consensus: 26.9%
17. TE-633_Dsub: 429967-430391 (-), Divergence to consensus: 7.2%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 424159)
Rhox11 (Sequence: TGGTGTTAA (+): 429856)
FOXP1 (Sequence: GTAAACA (+): 426913)
FOXP1 (Sequence: GTAAACA (+): 428256)
FOXO1 (Sequence: GTTGTTTTT (+): 426595)
POU2F1 (Sequence: TATTTTAAT (+): 429630)
POU2F1 (Sequence: TATTCAAAT (+): 429829)
POU2F1 (Sequence: TATTTTAAT (+): 429882)
Nobox (Sequence: TAATTAGT (+): 425020)
Nobox (Sequence: TAATTGCT (+): 426206)
RHOXF1 (Sequence: GGATCA (-): 424793)
RHOXF1 (Sequence: GGATTA (-): 425876)
RHOXF1 (Sequence: GGATCA (-): 425890)
RHOXF1 (Sequence: GGCTTA (-): 426379)
RHOXF1 (Sequence: GGCTTA (-): 427045)
RHOXF1 (Sequence: AGCTCA (-): 427337)
RHOXF1 (Sequence: GGATCA (-): 427402)
RHOXF1 (Sequence: GGATCA (-): 428959)
RHOXF1 (Sequence: GGATCA (-): 429050)
FOXO3_mmu (Sequence: GGTAAACA (+): 426912)
FOXO3_mmu (Sequence: GGTAAACA (+): 428255)
Sox5 (Sequence: ATTGTT (+): 426417)
Sox5 (Sequence: ATTGTT (+): 426885)
Sox5 (Sequence: ATTGTT (+): 428062)
Sox5 (Sequence: ATTGTT (+): 428500)
Sox5 (Sequence: ATTGTT (+): 429324)
Sox5 (Sequence: ATTGTT (+): 429597)
FOXO1 (Sequence: AAAAACAAC (-): 428400)
POU2F1 (Sequence: ATTAAAATA (-): 429836)
SOX9 (Sequence: TCATTGTT (+): 426883)
SOX9 (Sequence: TCATTGTT (+): 428060)
SOX9 (Sequence: TCATTGTT (+): 429322)
POU5F1 (Sequence: TTTGCAT (-): 426876)
POU5F1 (Sequence: TTTGCAT (-): 427829)
POU5F1 (Sequence: TTTGCAT (-): 428565)
RHOXF1 (Sequence: TGATCC (+): 424433)
RHOXF1 (Sequence: TGATCC (+): 424524)
RHOXF1 (Sequence: TGAGCT (+): 426066)
RHOXF1 (Sequence: TGAGCT (+): 426504)
RHOXF1 (Sequence: TAATCT (+): 426855)
RHOXF1 (Sequence: TAATCT (+): 428273)
RHOXF1 (Sequence: TAATCT (+): 428600)
RHOXF1 (Sequence: TAATCC (+): 428856)
RHOXF1 (Sequence: TAATCC (+): 428873)
RHOXF1 (Sequence: TAAGCT (+): 429964)
FOXO3_hsa (Sequence: GTAAACAA (+): 426913)
FOXO3_hsa (Sequence: GTAAACAA (+): 428256)
Gata4 (Sequence: GTTATCT (+): 426105)
Sox5 (Sequence: AACAAT (-): 424159)
Sox5 (Sequence: AACAAT (-): 425347)
Sox5 (Sequence: AACAAT (-): 425699)
Sox5 (Sequence: AACAAT (-): 426490)
Sox5 (Sequence: AACAAT (-): 428576)