Predicted piRNA cluster no. 128     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
462070
469025
Gene Set
RepeatMasker
Mapped
Reads
9.46
plus strand
minus strand
9.46
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00003201) Tr:4: 463240-463277 (-)
2. unknown (unknowndsub_v4_00003201) Tr:4: 463083-463174 (-)
3. unknown (unknowndsub_v4_00003201) Tr:4: 462694-463025 (-)
4. unknown (unknowndsub_v4_00003201) Tr:4: 461998-462486 (-)
5. unknown (unknowndsub_v4_00003201) Tr:4: 463240-463277 (-)
6. unknown (unknowndsub_v4_00003201) Tr:4: 463083-463174 (-)

RepeatMasker Annotation
1. TE-643_Dsub: 463521-468893 (+), Divergence to consensus: 1%
2. TE-558_Dsub: 468847-469124 (-), Divergence to consensus: 25.9%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGA (-): 468363)
Lhx8 (Sequence: TTAATTAA (-): 468495)
Rhox11 (Sequence: TGCTGTTAA (+): 465414)
POU5F1 (Sequence: ATGCAAA (+): 463202)
POU5F1 (Sequence: ATGCAAA (+): 463930)
FOXO3_mmu (Sequence: TGTTTAGA (-): 462323)
FOXO3_mmu (Sequence: TGTTTTGC (-): 467220)
RHOXF1 (Sequence: AGCTTA (-): 465236)
RHOXF1 (Sequence: AGCTTA (-): 465434)
RHOXF1 (Sequence: GGATTA (-): 466885)
RHOXF1 (Sequence: AGATCA (-): 467151)
RHOXF1 (Sequence: AGATTA (-): 467965)
FOXO3_mmu (Sequence: TGAAAACA (+): 464054)
FOXO3_mmu (Sequence: TCAAAACA (+): 465131)
Sox5 (Sequence: ATTGTT (+): 462168)
Sox5 (Sequence: ATTGTT (+): 465710)
Sox5 (Sequence: ATTGTT (+): 468952)
FOXO1 (Sequence: AAAAACAAC (-): 465256)
RHOXF1 (Sequence: TAAGCC (+): 462426)
RHOXF1 (Sequence: TGAGCC (+): 462735)
RHOXF1 (Sequence: TAAGCT (+): 463036)
RHOXF1 (Sequence: TGAGCT (+): 463612)
RHOXF1 (Sequence: TGATCT (+): 464075)
RHOXF1 (Sequence: TGATCC (+): 466269)
RHOXF1 (Sequence: TGATCC (+): 466392)
RHOXF1 (Sequence: TGATCT (+): 466410)
RHOXF1 (Sequence: TAATCT (+): 466509)
RHOXF1 (Sequence: TAATCT (+): 466668)
RHOXF1 (Sequence: TAATCT (+): 466858)
RHOXF1 (Sequence: TGAGCT (+): 467377)
RHOXF1 (Sequence: TAAGCT (+): 467878)
Rhox11 (Sequence: TATACACCA (-): 467028)
RFX4_2 (Sequence: GTATCCATG (-): 462893)
Sox5 (Sequence: AACAAT (-): 465192)
Sox5 (Sequence: AACAAT (-): 468363)