Predicted piRNA cluster no. 124     previous   next

Show proTRAC run info

Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
29825000
29831012
Gene Set
RepeatMasker
Mapped
Reads
12.79
plus strand
minus strand
12.79
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-441_Dsub: 29824458-29825380 (+), Divergence to consensus: 1.8%
2. TE-564_Dsub: 29825382-29830564 (+), Divergence to consensus: 1.1%
3. TE-564_Dsub: 29830563-29831204 (+), Divergence to consensus: 16.4%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAG (-): 29826592)
FOXP1 (Sequence: GTAAACA (+): 29826959)
FOXO3_mmu (Sequence: TGTTTAGA (-): 29828430)
Nobox (Sequence: TAATTGCT (+): 29826765)
RHOXF1 (Sequence: AGATCA (-): 29825609)
RHOXF1 (Sequence: AGATTA (-): 29825718)
RHOXF1 (Sequence: GGATCA (-): 29825777)
RHOXF1 (Sequence: GGATCA (-): 29826915)
RHOXF1 (Sequence: AGATCA (-): 29826935)
RHOXF1 (Sequence: AGATTA (-): 29828563)
RHOXF1 (Sequence: AGCTTA (-): 29829242)
RHOXF1 (Sequence: GGCTCA (-): 29829269)
RHOXF1 (Sequence: GGATCA (-): 29829374)
RHOXF1 (Sequence: GGCTTA (-): 29829394)
RHOXF1 (Sequence: AGATTA (-): 29829423)
RHOXF1 (Sequence: GGATCA (-): 29830049)
RHOXF1 (Sequence: AGATTA (-): 29830451)
RHOXF1 (Sequence: AGCTTA (-): 29830562)
Sox5 (Sequence: ATTGTT (+): 29828192)
FOXO1 (Sequence: GTAAACAGG (-): 29826959)
FOXO1 (Sequence: GAAAACAGC (-): 29828591)
RHOXF1 (Sequence: TAATCT (+): 29825049)
RHOXF1 (Sequence: TGAGCC (+): 29825312)
RHOXF1 (Sequence: TGATCC (+): 29825501)
RHOXF1 (Sequence: TAATCT (+): 29826021)
RHOXF1 (Sequence: TGAGCC (+): 29826519)
RHOXF1 (Sequence: TAATCT (+): 29826582)
Rhox11 (Sequence: AATACACCA (-): 29830382)
Gata4 (Sequence: GTTATCT (+): 29829024)
Sox5 (Sequence: AACAAT (-): 29826592)