Predicted piRNA cluster no. 168     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
21384071
21389277
Gene Set
RepeatMasker
Mapped
Reads
9.85
plus strand
minus strand
9.85
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-437_Dsub: 21384078-21384437 (+), Divergence to consensus: 0.3%
2. GYPSY-11_Dsub: 21384438-21388543 (+), Divergence to consensus: 1.1%
3. TE-437_Dsub: 21388545-21388908 (+), Divergence to consensus: 0.3%
4. TE-447_Dsub: 21389182-21389289 (-), Divergence to consensus: 11.1%

Transcription Factor Binding Sites
FOXP1 (Sequence: GTAAACA (+): 21386292)
FOXP1 (Sequence: GTAAACA (+): 21386883)
POU5F1 (Sequence: ATGCAAA (+): 21384773)
POU5F1 (Sequence: ATGCAAA (+): 21386262)
FOXO3_mmu (Sequence: TGTTTTCA (-): 21384364)
FOXO3_mmu (Sequence: TGTTTAGA (-): 21387416)
FOXO3_mmu (Sequence: TGTTTTCA (-): 21388831)
RHOXF1 (Sequence: AGATTA (-): 21385986)
RHOXF1 (Sequence: AGATTA (-): 21386138)
RHOXF1 (Sequence: AGATTA (-): 21386550)
RHOXF1 (Sequence: GGATTA (-): 21387262)
RHOXF1 (Sequence: AGATCA (-): 21387332)
RHOXF1 (Sequence: AGCTTA (-): 21387876)
RHOXF1 (Sequence: GGATCA (-): 21388141)
RHOXF1 (Sequence: AGCTCA (-): 21388524)
RHOXF1 (Sequence: AGATTA (-): 21389110)
RHOXF1 (Sequence: GGATCA (-): 21389179)
FOXO3_mmu (Sequence: TGTAAACA (+): 21386291)
FOXO3_mmu (Sequence: TCAAAACA (+): 21387183)
FOXO1 (Sequence: AAAAACAGG (-): 21388264)
Nobox (Sequence: GGCAATTA (-): 21384692)
POU5F1 (Sequence: TTTGCAT (-): 21388993)
RHOXF1 (Sequence: TAATCC (+): 21385214)
RHOXF1 (Sequence: TAATCC (+): 21387629)
RHOXF1 (Sequence: TAAGCC (+): 21387779)
RHOXF1 (Sequence: TAAGCC (+): 21389114)
Rhox11 (Sequence: AAAACACCG (-): 21385152)
Rhox11 (Sequence: TAAACACCA (-): 21386884)
FOXO3_hsa (Sequence: GTAAACAA (+): 21386292)
Sox5 (Sequence: AACAAT (-): 21384665)
Sox5 (Sequence: AACAAT (-): 21384670)