Predicted piRNA cluster no. 142     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
1992003
1999989
Gene Set
RepeatMasker
Mapped
Reads
8.48
plus strand
minus strand
8.48
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-236_Dsub: 1991896-1992003 (-), Divergence to consensus: 13.2%
2. TE-622_Dsub: 1991922-1992575 (+), Divergence to consensus: 9.3%
3. TE-572_Dsub: 1992576-1992702 (-), Divergence to consensus: 2.4%
4. TE-622_Dsub: 1992703-1992721 (+), Divergence to consensus: 9.3%
5. GYPSY-18_Dsub: 1993074-1993216 (-), Divergence to consensus: 2.1%
6. GYPSY-18_Dsub: 1993217-1995703 (-), Divergence to consensus: 5.7%
7. GYPSY-18_Dsub: 1995682-1997466 (-), Divergence to consensus: 2.3%
8. GYPSY-18_Dsub: 1997468-1999611 (-), Divergence to consensus: 3.1%
9. TE-607_Dsub: 1999633-1999775 (-), Divergence to consensus: 14.1%
10. TE-612_Dsub: 1999694-2000040 (+), Divergence to consensus: 13.9%
11. TE-320_Dsub: 1999900-2000083 (-), Divergence to consensus: 24.6%

Transcription Factor Binding Sites
FOXP1 (Sequence: TGTTTAC (-): 1996092)
Lhx8 (Sequence: CTAATTAA (-): 1995329)
POU5F1 (Sequence: ATGCAAA (+): 1996664)
FOXO3_mmu (Sequence: TGTTTACC (-): 1996092)
POU2F1 (Sequence: TATGCTAAT (+): 1995325)
RHOXF1 (Sequence: GGCTCA (-): 1992428)
RHOXF1 (Sequence: GGCTCA (-): 1992567)
RHOXF1 (Sequence: GGATCA (-): 1993305)
RHOXF1 (Sequence: AGCTTA (-): 1993849)
RHOXF1 (Sequence: AGCTCA (-): 1993952)
RHOXF1 (Sequence: GGCTTA (-): 1994299)
RHOXF1 (Sequence: AGCTTA (-): 1994337)
RHOXF1 (Sequence: GGATCA (-): 1994513)
RHOXF1 (Sequence: AGCTCA (-): 1994909)
RHOXF1 (Sequence: AGCTTA (-): 1995395)
RHOXF1 (Sequence: AGATTA (-): 1996659)
RHOXF1 (Sequence: GGATCA (-): 1997699)
RHOXF1 (Sequence: AGCTTA (-): 1998243)
RHOXF1 (Sequence: AGCTCA (-): 1998346)
RHOXF1 (Sequence: GGCTTA (-): 1998693)
RHOXF1 (Sequence: AGCTTA (-): 1998731)
RHOXF1 (Sequence: GGATCA (-): 1998907)
RHOXF1 (Sequence: AGCTCA (-): 1999303)
RHOXF1 (Sequence: AGCTTA (-): 1999724)
FOXO3_mmu (Sequence: TCAAAACA (+): 1993538)
FOXO3_mmu (Sequence: GCAAAACA (+): 1996750)
FOXO3_mmu (Sequence: TCAAAACA (+): 1997932)
Sox5 (Sequence: ATTGTT (+): 1997344)
FOXO1 (Sequence: ATAAACAGC (-): 1992205)
Nobox (Sequence: GCTAATTA (-): 1995328)
Nobox (Sequence: GCCAATTA (-): 1997460)
POU2F1 (Sequence: ATTTGAATA (-): 1996882)
SOX9 (Sequence: CTATTGTT (+): 1997342)
POU5F1 (Sequence: TTTGCAT (-): 1996338)
RHOXF1 (Sequence: TGATCT (+): 1992316)
RHOXF1 (Sequence: TAATCT (+): 1992771)
RHOXF1 (Sequence: TAAGCT (+): 1993158)
RHOXF1 (Sequence: TGATCT (+): 1993340)
RHOXF1 (Sequence: TAATCT (+): 1993609)
RHOXF1 (Sequence: TGAGCC (+): 1993726)
RHOXF1 (Sequence: TGAGCT (+): 1993950)
RHOXF1 (Sequence: TAAGCT (+): 1994767)
RHOXF1 (Sequence: TGATCT (+): 1994956)
RHOXF1 (Sequence: TAAGCT (+): 1995091)
RHOXF1 (Sequence: TGAGCT (+): 1995655)
RHOXF1 (Sequence: TGATCT (+): 1996634)
RHOXF1 (Sequence: TAAGCT (+): 1996925)
RHOXF1 (Sequence: TGATCT (+): 1997144)
RHOXF1 (Sequence: TAATCC (+): 1997275)
RHOXF1 (Sequence: TAAGCT (+): 1997552)
RHOXF1 (Sequence: TGATCT (+): 1997734)
RHOXF1 (Sequence: TAATCT (+): 1998003)
RHOXF1 (Sequence: TGAGCC (+): 1998120)
RHOXF1 (Sequence: TGAGCT (+): 1998344)
RHOXF1 (Sequence: TAAGCT (+): 1999161)
RHOXF1 (Sequence: TGATCT (+): 1999350)
RHOXF1 (Sequence: TAAGCT (+): 1999485)
Rhox11 (Sequence: TAAACAGCG (-): 1992206)
RFX4_2 (Sequence: GTAACTACG (-): 1995380)
Gata4 (Sequence: AGATAAG (-): 1995038)
Gata4 (Sequence: AGATAAC (-): 1997062)
Gata4 (Sequence: AGATAAG (-): 1999432)
Gata4 (Sequence: GTTATCT (+): 1992366)
Gata4 (Sequence: GTTATCT (+): 1996045)
Sox5 (Sequence: AACAAT (-): 1994002)
Sox5 (Sequence: AACAAT (-): 1996819)
Sox5 (Sequence: AACAAT (-): 1998396)