Predicted piRNA cluster no. 119     previous   next

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Show proTRAC cluster info

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
16848858
16855999
Gene Set
RepeatMasker
Mapped
Reads
42.4
plus strand
minus strand
42.4
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-571_Dsub: 16849355-16849391 (+), Divergence to consensus: 24.1%
2. TE-640_Dsub: 16849392-16849658 (-), Divergence to consensus: 17.2%
3. TE-633_Dsub: 16849660-16849706 (+), Divergence to consensus: 10.6%
4. TE-633_Dsub: 16849773-16850995 (+), Divergence to consensus: 22.8%
5. TE-633_Dsub: 16851016-16852639 (+), Divergence to consensus: 5.6%
6. TE-236_Dsub: 16852679-16852715 (+), Divergence to consensus: 28%
7. TE-613_Dsub: 16852725-16852800 (-), Divergence to consensus: 14.5%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATGG (-): 16855241)
FOXP1 (Sequence: TGTTTAC (-): 16852804)
Lhx8 (Sequence: TTAATTAA (-): 16852638)
Lhx8 (Sequence: CTAATTAG (-): 16854611)
Lhx8 (Sequence: TTAATTAA (-): 16854668)
Lhx8 (Sequence: TTAATTAA (-): 16855175)
FOXO1 (Sequence: GTTGTTTTT (+): 16850418)
FOXO1 (Sequence: GCTGTTTAC (+): 16852802)
FOXO1 (Sequence: GTTGTTTTT (+): 16853573)
POU5F1 (Sequence: ATGCAAA (+): 16850204)
POU5F1 (Sequence: ATGCAAA (+): 16851118)
POU5F1 (Sequence: ATGCAAA (+): 16851625)
POU5F1 (Sequence: ATGCAAA (+): 16855456)
FOXO3_mmu (Sequence: TGTTTACC (-): 16852804)
POU2F1 (Sequence: TATGCTAAT (+): 16848923)
Nobox (Sequence: TAATTAGC (+): 16854612)
RHOXF1 (Sequence: AGATCA (-): 16850566)
RHOXF1 (Sequence: GGATTA (-): 16850592)
RHOXF1 (Sequence: AGATCA (-): 16850719)
RHOXF1 (Sequence: AGCTCA (-): 16850845)
RHOXF1 (Sequence: AGCTCA (-): 16851046)
RHOXF1 (Sequence: AGATCA (-): 16851485)
RHOXF1 (Sequence: AGATCA (-): 16851723)
RHOXF1 (Sequence: AGATCA (-): 16851808)
RHOXF1 (Sequence: AGATTA (-): 16852716)
RHOXF1 (Sequence: AGCTTA (-): 16854393)
RHOXF1 (Sequence: AGCTCA (-): 16854617)
RHOXF1 (Sequence: AGCTTA (-): 16854801)
RHOXF1 (Sequence: AGATTA (-): 16854840)
RHOXF1 (Sequence: GGATTA (-): 16855325)
RHOXF1 (Sequence: GGCTCA (-): 16855958)
Sox5 (Sequence: ATTGTT (+): 16849972)
Sox5 (Sequence: ATTGTT (+): 16854125)
Sox5 (Sequence: ATTGTT (+): 16854686)
Sox5 (Sequence: ATTGTT (+): 16855821)
Nobox (Sequence: ACTAATTA (-): 16854610)
POU2F1 (Sequence: ATTAAAATA (-): 16848939)
POU2F1 (Sequence: ATTAAAATA (-): 16853779)
SOX9 (Sequence: TTATTGTT (+): 16855819)
POU5F1 (Sequence: TTTGCAT (-): 16852687)
POU5F1 (Sequence: TTTGCAT (-): 16853539)
POU5F1 (Sequence: TTTGCAT (-): 16854813)
POU5F1 (Sequence: TTTGCAT (-): 16855162)
SPZ1 (Sequence: CTCAAACCCC (-): 16854860)
RHOXF1 (Sequence: TGAGCC (+): 16848867)
RHOXF1 (Sequence: TGAGCC (+): 16849216)
RHOXF1 (Sequence: TAATCC (+): 16850338)
RHOXF1 (Sequence: TGATCT (+): 16851149)
RHOXF1 (Sequence: TGATCT (+): 16852854)
RHOXF1 (Sequence: TGAGCT (+): 16853883)
RHOXF1 (Sequence: TAAGCC (+): 16855018)
Rhox11 (Sequence: TTTACACCG (-): 16852700)
Gata4 (Sequence: CTTATCT (+): 16853964)
Sox5 (Sequence: AACAAT (-): 16852569)
Sox5 (Sequence: AACAAT (-): 16853788)
Sox5 (Sequence: AACAAT (-): 16855241)