Predicted piRNA cluster no. 97     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
488001
498920
Gene Set
RepeatMasker
Mapped
Reads
38.54
plus strand
minus strand
38.54
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00000039) Tr:4: 488110-488505 (-)
2. unknown (unknowndsub_v4_00000039) Tr:4: 488110-488439 (-)
3. unknown (unknowndsub_v4_00000040) Tr:4: 497842-497871 (+)
4. unknown (unknowndsub_v4_00000040) Tr:4: 497983-498185 (+)

RepeatMasker Annotation
1. TE-581_Dsub: 487296-488091 (+), Divergence to consensus: 14.2%
2. TE-392_Dsub: 488050-488100 (-), Divergence to consensus: 13.7%
3. CR1-4_Dsub: 488879-489253 (+), Divergence to consensus: 26.9%
4. CR1-4_Dsub: 489267-490207 (+), Divergence to consensus: 14.6%
5. TE-124_Dsub: 490495-490593 (-), Divergence to consensus: 22.7%
6. TE-581_Dsub: 490513-491140 (+), Divergence to consensus: 23.6%
7. TE-620_Dsub: 491141-491232 (-), Divergence to consensus: 10.9%
8. TE-581_Dsub: 491233-491287 (+), Divergence to consensus: 23.6%
9. R1-1_Dsub: 491307-491411 (+), Divergence to consensus: 19.3%
10. TE-633_Dsub: 491398-491527 (+), Divergence to consensus: 9.8%
11. TE-529_Dsub: 491531-492410 (-), Divergence to consensus: 17.2%
12. R1-1_Dsub: 492406-492823 (+), Divergence to consensus: 19.4%
13. R1-1_Dsub: 492799-493870 (+), Divergence to consensus: 8.5%
14. R1-1_Dsub: 493863-494482 (-), Divergence to consensus: 11.2%
15. TE-601_Dsub: 494479-494749 (+), Divergence to consensus: 11.8%
16. TE-570_Dsub: 494884-494967 (+), Divergence to consensus: 26.2%
17. TE-49_Dsub: 494890-495006 (-), Divergence to consensus: 34.3%
18. TE-583_Dsub: 496092-496358 (+), Divergence to consensus: 22.5%
19. TE-640_Dsub: 496135-496607 (+), Divergence to consensus: 17.4%
20. TE-456_Dsub: 496576-496757 (+), Divergence to consensus: 11.6%
21. TE-565_Dsub: 496758-496812 (-), Divergence to consensus: 12.7%
22. TE-456_Dsub: 496813-496835 (+), Divergence to consensus: 11.6%
23. TE-600_Dsub: 497390-497700 (+), Divergence to consensus: 17.4%
24. TE-622_Dsub: 497696-497930 (+), Divergence to consensus: 21.4%
25. TE-600_Dsub: 498676-498985 (+), Divergence to consensus: 17.8%

Transcription Factor Binding Sites
Lhx8 (Sequence: CTAATTAA (-): 490812)
Lhx8 (Sequence: TTAATTAA (-): 495042)
Rhox11 (Sequence: TGGTGTTAA (+): 489377)
Rhox11 (Sequence: TGGTGTAAT (+): 489670)
POU5F1 (Sequence: ATGCAAA (+): 491001)
FOXO3_mmu (Sequence: TGTTTTCA (-): 494967)
POU2F1 (Sequence: TATTTTAAT (+): 498490)
Nobox (Sequence: TAATTGCT (+): 491845)
RHOXF1 (Sequence: AGCTTA (-): 488837)
RHOXF1 (Sequence: GGCTCA (-): 489497)
RHOXF1 (Sequence: GGATTA (-): 489841)
RHOXF1 (Sequence: AGCTTA (-): 489910)
RHOXF1 (Sequence: AGCTTA (-): 489930)
RHOXF1 (Sequence: AGCTTA (-): 490237)
RHOXF1 (Sequence: GGCTTA (-): 490423)
RHOXF1 (Sequence: GGCTCA (-): 490951)
RHOXF1 (Sequence: AGATTA (-): 491412)
RHOXF1 (Sequence: AGCTTA (-): 491734)
RHOXF1 (Sequence: AGCTCA (-): 492494)
RHOXF1 (Sequence: AGCTTA (-): 492859)
RHOXF1 (Sequence: GGCTTA (-): 493787)
RHOXF1 (Sequence: AGCTCA (-): 494559)
RHOXF1 (Sequence: GGCTTA (-): 494775)
RHOXF1 (Sequence: GGCTCA (-): 496367)
RHOXF1 (Sequence: GGCTTA (-): 497413)
RHOXF1 (Sequence: GGATTA (-): 498167)
RHOXF1 (Sequence: GGCTTA (-): 498298)
RHOXF1 (Sequence: GGCTTA (-): 498699)
FOXO3_mmu (Sequence: GCAAAACA (+): 491237)
FOXO3_mmu (Sequence: TCAAAACA (+): 498395)
Sox5 (Sequence: ATTGTT (+): 491780)
Sox5 (Sequence: ATTGTT (+): 495618)
FOXO1 (Sequence: AAAAACAAC (-): 496159)
Nobox (Sequence: GCTAATTA (-): 490811)
Mybl1_1 (Sequence: AACCGTTA (+): 488032)
Mybl1_1 (Sequence: AACCGTTA (+): 496571)
SOX9 (Sequence: CTATTGTT (+): 491778)
POU5F1 (Sequence: TTTGCAT (-): 491806)
POU5F1 (Sequence: TTTGCAT (-): 497652)
Mybl1_1 (Sequence: TAACGGTT (-): 491475)
RHOXF1 (Sequence: TGAGCT (+): 488835)
RHOXF1 (Sequence: TGATCT (+): 489371)
RHOXF1 (Sequence: TGAGCC (+): 489726)
RHOXF1 (Sequence: TAAGCT (+): 490780)
RHOXF1 (Sequence: TGATCT (+): 490867)
RHOXF1 (Sequence: TAATCC (+): 492146)
RHOXF1 (Sequence: TGATCT (+): 492633)
RHOXF1 (Sequence: TGATCC (+): 492853)
RHOXF1 (Sequence: TAAGCC (+): 494170)
RHOXF1 (Sequence: TAAGCC (+): 494379)
RHOXF1 (Sequence: TAATCC (+): 496015)
RHOXF1 (Sequence: TGATCT (+): 496256)
RHOXF1 (Sequence: TAAGCT (+): 496307)
RHOXF1 (Sequence: TAATCT (+): 498143)
RFX4_2 (Sequence: GTAACCAGG (-): 494417)
Sox5 (Sequence: AACAAT (-): 491673)
Sox5 (Sequence: AACAAT (-): 491913)
Sox5 (Sequence: AACAAT (-): 497343)