Predicted piRNA cluster no. 100     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrO_v4 
681100
691332
Gene Set
RepeatMasker
Mapped
Reads
28.78
plus strand
minus strand
28.78
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TRANSIB-1_Dsub: 680899-681192 (+), Divergence to consensus: 9.3%
2. CR1-4_Dsub: 681188-681763 (-), Divergence to consensus: 29.9%
3. CR1-4_Dsub: 681768-682115 (-), Divergence to consensus: 5.4%
4. CR1-1_Dsub: 682116-683090 (-), Divergence to consensus: 11.6%
5. TE-581_Dsub: 683055-683877 (+), Divergence to consensus: 12.1%
6. TE-454_Dsub: 683851-684269 (-), Divergence to consensus: 3.9%
7. R1-1_Dsub: 684948-685482 (-), Divergence to consensus: 41.9%
8. R1-1_Dsub: 685467-685664 (-), Divergence to consensus: 41.9%
9. HELITRON-3_Dsub: 686305-686341 (-), Divergence to consensus: 13.5%
10. TE-560_Dsub: 686318-686385 (+), Divergence to consensus: 29.2%
11. TE-567_Dsub: 686335-687985 (-), Divergence to consensus: 1.4%
12. TE-124_Dsub: 687923-688013 (+), Divergence to consensus: 35.9%
13. TE-454_Dsub: 687980-688209 (-), Divergence to consensus: 1.3%
14. TE-588_Dsub: 688197-688341 (+), Divergence to consensus: 4.2%
15. TE-640_Dsub: 688229-690006 (-), Divergence to consensus: 9%
16. CR1-1_Dsub: 690022-690518 (-), Divergence to consensus: 22.9%
17. TE-432_Dsub: 691034-691058 (+), Divergence to consensus: 34.1%
18. TE-586_Dsub: 691059-691226 (-), Divergence to consensus: 21.6%
19. TE-432_Dsub: 691227-691242 (+), Divergence to consensus: 34.1%
20. TE-556_Dsub: 691241-691332 (+), Divergence to consensus: 8.4%
21. TE-563_Dsub: 691257-691360 (-), Divergence to consensus: 22.8%

Transcription Factor Binding Sites
FIGLA (Sequence: TCCACGTGTT (-): 687476)
POU5F1 (Sequence: ATGCAAA (+): 690993)
FOXO3_mmu (Sequence: TGTTTTCC (-): 682317)
FOXO3_mmu (Sequence: TGTTTTGC (-): 684540)
POU2F1 (Sequence: TATTTTAAT (+): 690346)
POU2F1 (Sequence: TATGCAAAT (+): 690992)
Nobox (Sequence: TAATTGCT (+): 687914)
RHOXF1 (Sequence: GGCTCA (-): 681579)
RHOXF1 (Sequence: AGATTA (-): 681993)
RHOXF1 (Sequence: AGATCA (-): 682466)
RHOXF1 (Sequence: GGCTCA (-): 683574)
RHOXF1 (Sequence: GGCTTA (-): 684603)
RHOXF1 (Sequence: AGCTTA (-): 688446)
RHOXF1 (Sequence: AGCTTA (-): 688860)
RHOXF1 (Sequence: GGATCA (-): 689546)
RHOXF1 (Sequence: GGATCA (-): 689637)
RHOXF1 (Sequence: AGATTA (-): 690380)
RHOXF1 (Sequence: AGCTCA (-): 691045)
FOXO3_mmu (Sequence: TCAAAACA (+): 682844)
FOXO3_mmu (Sequence: GCTAAACA (+): 682957)
FOXO3_mmu (Sequence: TCAAAACA (+): 690042)
FOXO3_mmu (Sequence: GGAAAACA (+): 690120)
FOXO3_mmu (Sequence: GCAAAACA (+): 690485)
FOXO3_mmu (Sequence: GCAAAACA (+): 690491)
FOXO3_mmu (Sequence: GCAAAACA (+): 691057)
Sox5 (Sequence: ATTGTT (+): 684019)
Sox5 (Sequence: ATTGTT (+): 684538)
Sox5 (Sequence: ATTGTT (+): 688723)
Sox5 (Sequence: ATTGTT (+): 688830)
Sox5 (Sequence: ATTGTT (+): 690999)
Nobox (Sequence: ACTAATTA (-): 689048)
Mybl1_1 (Sequence: AACCGTTA (+): 683806)
POU5F1 (Sequence: TTTGCAT (-): 687606)
POU5F1 (Sequence: TTTGCAT (-): 688571)
POU5F1 (Sequence: TTTGCAT (-): 691012)
RHOXF1 (Sequence: TAATCC (+): 681464)
RHOXF1 (Sequence: TGAGCT (+): 682032)
RHOXF1 (Sequence: TGATCT (+): 682767)
RHOXF1 (Sequence: TAAGCT (+): 683376)
RHOXF1 (Sequence: TGATCT (+): 683463)
RHOXF1 (Sequence: TGATCT (+): 684183)
RHOXF1 (Sequence: TGATCT (+): 684504)
RHOXF1 (Sequence: TGATCC (+): 686788)
RHOXF1 (Sequence: TGATCC (+): 687027)
RHOXF1 (Sequence: TAAGCT (+): 687379)
RHOXF1 (Sequence: TAAGCT (+): 687391)
RHOXF1 (Sequence: TAATCT (+): 688290)
RHOXF1 (Sequence: TAATCT (+): 688473)
RHOXF1 (Sequence: TGATCC (+): 689277)
RHOXF1 (Sequence: TAATCT (+): 690777)
RHOXF1 (Sequence: TAAGCT (+): 690859)
RHOXF1 (Sequence: TGAGCC (+): 691188)
Rhox11 (Sequence: ATTACACCA (-): 681632)
Rhox11 (Sequence: AAAACACCG (-): 690441)
Rhox11 (Sequence: ATAACAGCA (-): 690697)
Gata4 (Sequence: AGATAAG (-): 681779)
Sox5 (Sequence: AACAAT (-): 687666)
Sox5 (Sequence: AACAAT (-): 688266)