Predicted piRNA cluster no. 51     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrE_v4 
2663515
2673630
Gene Set
RepeatMasker
Mapped
Reads
391.12
plus strand
minus strand
391.12
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation
1. unknown (unknowndsub_v4_00010760) Tr:4: 2665097-2665216 (-)
2. unknown (unknowndsub_v4_00010760) Tr:4: 2663804-2664091 (-)
3. unknown (unknowndsub_v4_00010761) Tr:4: 2673516-2673817 (+)
4. unknown (unknowndsub_v4_00010761) Tr:4 UTR: 2673516-2673767 (+)

RepeatMasker Annotation
1. TE-167_Dsub: 2664639-2664699 (+), Divergence to consensus: 22.9%
2. TE-592_Dsub: 2665311-2665803 (-), Divergence to consensus: 34.1%
3. TE-555_Dsub: 2665335-2665929 (+), Divergence to consensus: 37.2%
4. TE-495_Dsub: 2665855-2665958 (+), Divergence to consensus: 20.2%
5. TE-594_Dsub: 2666110-2667278 (+), Divergence to consensus: 31.2%
6. GYPSY-5_Dsub: 2667294-2667628 (+), Divergence to consensus: 12.8%
7. GYPSY-5_Dsub: 2667634-2667682 (+), Divergence to consensus: 12.2%
8. GYPSY-5_Dsub: 2667821-2668380 (+), Divergence to consensus: 14.3%
9. GYPSY-5_Dsub: 2668382-2668717 (+), Divergence to consensus: 25.2%
10. TE-594_Dsub: 2668718-2668820 (+), Divergence to consensus: 28.8%
11. TE-594_Dsub: 2668851-2669055 (+), Divergence to consensus: 13.4%
12. TE-495_Dsub: 2669058-2669174 (+), Divergence to consensus: 29.6%
13. TE-494_Dsub: 2669164-2669249 (+), Divergence to consensus: 14.7%
14. TE-267_Dsub: 2669189-2669337 (-), Divergence to consensus: 33.6%
15. CR1-3_Dsub: 2669348-2669580 (+), Divergence to consensus: 13.5%
16. TE-516_Dsub: 2670478-2670577 (+), Divergence to consensus: 28%
17. TE-642_Dsub: 2670485-2670666 (-), Divergence to consensus: 37.1%
18. TE-337_Dsub: 2670558-2670683 (+), Divergence to consensus: 33%
19. HELITRON-4_Dsub: 2670578-2670669 (-), Divergence to consensus: 35.2%
20. TE-330_Dsub: 2671283-2671347 (-), Divergence to consensus: 18.8%
21. TE-577_Dsub: 2671618-2671637 (-), Divergence to consensus: 25.1%
22. TE-586_Dsub: 2671638-2671684 (+), Divergence to consensus: 4.2%
23. TE-577_Dsub: 2671685-2671705 (-), Divergence to consensus: 25.1%
24. TE-192_Dsub: 2671882-2671956 (-), Divergence to consensus: 20.7%
25. TE-642_Dsub: 2671899-2671989 (+), Divergence to consensus: 24.2%
26. HELITRON-3_Dsub: 2671900-2672009 (-), Divergence to consensus: 29.5%
27. TE-337_Dsub: 2672231-2672302 (-), Divergence to consensus: 27.9%
28. HELITRON-3_Dsub: 2672303-2672362 (+), Divergence to consensus: 21.6%
29. TE-337_Dsub: 2672363-2672387 (-), Divergence to consensus: 27.9%
30. TE-192_Dsub: 2672642-2672737 (-), Divergence to consensus: 24.1%
31. TE-642_Dsub: 2672668-2672728 (-), Divergence to consensus: 16.4%
32. TE-48_Dsub: 2672729-2673041 (+), Divergence to consensus: 6.3%
33. TE-516_Dsub: 2672946-2673047 (+), Divergence to consensus: 36.3%
34. TE-597_Dsub: 2672950-2673179 (-), Divergence to consensus: 36.5%

Transcription Factor Binding Sites
SOX9 (Sequence: AACAATAG (-): 2671486)
FOXP1 (Sequence: TGTTTAC (-): 2671945)
Lhx8 (Sequence: CTAATTAA (-): 2668073)
Rhox11 (Sequence: CGGTGTAAA (+): 2664529)
FOXP1 (Sequence: GTAAACA (+): 2670721)
FOXO1 (Sequence: GTTGTTTTT (+): 2665048)
FOXO1 (Sequence: CTTGTTTTT (+): 2671599)
POU5F1 (Sequence: ATGCAAA (+): 2673090)
FOXO3_mmu (Sequence: TGTTTTCC (-): 2665694)
FOXO3_mmu (Sequence: TGTTTTCC (-): 2669802)
FOXO3_mmu (Sequence: TGTTTACA (-): 2671945)
FOXO3_mmu (Sequence: TGTTTTGC (-): 2672517)
FOXO3_mmu (Sequence: TGTTTAGA (-): 2672527)
FOXO3_mmu (Sequence: TGTTTTGC (-): 2673524)
POU2F1 (Sequence: TATGCTAAT (+): 2664175)
POU2F1 (Sequence: TATGTAAAT (+): 2665597)
POU2F1 (Sequence: TATGTAAAT (+): 2671327)
POU2F1 (Sequence: TATGTAAAT (+): 2671937)
POU2F1 (Sequence: TATGCAAAT (+): 2673089)
Nobox (Sequence: TAATTGGT (+): 2670697)
RHOXF1 (Sequence: GGATCA (-): 2663679)
RHOXF1 (Sequence: AGATCA (-): 2664245)
RHOXF1 (Sequence: AGCTTA (-): 2664447)
RHOXF1 (Sequence: AGATTA (-): 2665003)
RHOXF1 (Sequence: GGCTTA (-): 2665503)
RHOXF1 (Sequence: GGATTA (-): 2665826)
RHOXF1 (Sequence: GGATTA (-): 2667363)
RHOXF1 (Sequence: GGATCA (-): 2668778)
RHOXF1 (Sequence: GGCTTA (-): 2669327)
RHOXF1 (Sequence: AGATCA (-): 2669790)
RHOXF1 (Sequence: AGATCA (-): 2671000)
RHOXF1 (Sequence: AGATTA (-): 2671075)
RHOXF1 (Sequence: GGATCA (-): 2671565)
RHOXF1 (Sequence: AGCTTA (-): 2672364)
RHOXF1 (Sequence: GGATTA (-): 2672550)
FOXO3_mmu (Sequence: GCTAAACA (+): 2663563)
FOXO3_mmu (Sequence: TCAAAACA (+): 2667134)
FOXO3_mmu (Sequence: GCAAAACA (+): 2670095)
Sox5 (Sequence: ATTGTT (+): 2665231)
Sox5 (Sequence: ATTGTT (+): 2665692)
Sox5 (Sequence: ATTGTT (+): 2671682)
Sox5 (Sequence: ATTGTT (+): 2671794)
Sox5 (Sequence: ATTGTT (+): 2673395)
FOXO1 (Sequence: GTAAACAAC (-): 2670721)
Nobox (Sequence: GCTAATTA (-): 2668072)
Nobox (Sequence: AGTAATTA (-): 2670955)
POU2F1 (Sequence: ATTTACATA (-): 2671922)
SOX9 (Sequence: CTATTGTT (+): 2665690)
SOX9 (Sequence: TTATTGTT (+): 2671680)
POU5F1 (Sequence: TTTGCAT (-): 2671400)
RHOXF1 (Sequence: TAATCC (+): 2663660)
RHOXF1 (Sequence: TGATCT (+): 2665216)
RHOXF1 (Sequence: TAAGCT (+): 2665751)
RHOXF1 (Sequence: TGATCC (+): 2666217)
RHOXF1 (Sequence: TAATCC (+): 2667195)
RHOXF1 (Sequence: TAAGCT (+): 2667393)
RHOXF1 (Sequence: TAATCC (+): 2668940)
RHOXF1 (Sequence: TGATCC (+): 2669194)
RHOXF1 (Sequence: TGATCC (+): 2669555)
RHOXF1 (Sequence: TAAGCT (+): 2670262)
RHOXF1 (Sequence: TAAGCT (+): 2670326)
RHOXF1 (Sequence: TGATCC (+): 2670438)
RHOXF1 (Sequence: TAAGCT (+): 2670734)
RHOXF1 (Sequence: TGATCT (+): 2670978)
RHOXF1 (Sequence: TGAGCC (+): 2671771)
RHOXF1 (Sequence: TAATCT (+): 2671779)
RHOXF1 (Sequence: TGATCT (+): 2672472)
Rhox11 (Sequence: ATTACACCA (-): 2664547)
Rhox11 (Sequence: ATAACAGCG (-): 2664557)
FOXO3_hsa (Sequence: GTAAACAA (+): 2670721)
RFX4_2 (Sequence: GTATCTATG (-): 2664670)
RFX4_2 (Sequence: GTATCTATG (-): 2670549)
Gata4 (Sequence: AGATAAC (-): 2668303)
Gata4 (Sequence: AGATAAC (-): 2669435)
FOXO3_hsa (Sequence: ATGTTTAC (-): 2671944)
Sox5 (Sequence: AACAAT (-): 2670314)
Sox5 (Sequence: AACAAT (-): 2671486)
Sox5 (Sequence: AACAAT (-): 2673372)