Predicted piRNA cluster no. 140     previous   next

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1 hit
2-5 hits
6-10 hits
11-20 hits
21-50 hits
51-100 hits
> 100 hits
ChrU_v4 
1824510
1832337
Gene Set
RepeatMasker
Mapped
Reads
15.44
plus strand
minus strand
15.44
RepeatMasker Color Code
+
100-98% Identity
<98-95% Identity
<95-90% Identity
<90-85% Identity
<85-80% Identity
<80-75% Identity
<75-70% Identity
<70% Identity
-
Gene Set Color Code
+
Gene
Pseudogene
Other
-
Topology/Coverage Color Code
Coverage Plus Strand
Coverage Minus Strand
Mainstrand: Plus
Mainstrand: Minus
Complementary Strand
Flanking Region
(if option -flank >0)
Gene Set Annotation

RepeatMasker Annotation
1. TE-600_Dsub: 1824518-1825241 (-), Divergence to consensus: 24.7%
2. TE-625_Dsub: 1825851-1825977 (+), Divergence to consensus: 18.1%
3. TE-494_Dsub: 1825865-1826335 (-), Divergence to consensus: 5.5%
4. TE-622_Dsub: 1826326-1826766 (-), Divergence to consensus: 22.8%
5. TE-607_Dsub: 1826691-1826939 (+), Divergence to consensus: 34.7%
6. TE-633_Dsub: 1826770-1827244 (-), Divergence to consensus: 11%
7. TE-572_Dsub: 1827197-1827254 (+), Divergence to consensus: 12.1%
8. CR1-2_Dsub: 1827238-1828316 (+), Divergence to consensus: 6%
9. CR1-3_Dsub: 1828127-1828742 (-), Divergence to consensus: 15%
10. TE-560_Dsub: 1828737-1829489 (+), Divergence to consensus: 21.1%
11. TE-320_Dsub: 1829393-1829501 (-), Divergence to consensus: 22.9%
12. CR1-3_Dsub: 1829486-1829881 (-), Divergence to consensus: 2.2%
13. HELITRON-3_Dsub: 1830111-1830157 (-), Divergence to consensus: 14.9%
14. TE-560_Dsub: 1831047-1831882 (-), Divergence to consensus: 17.9%
15. TE-584_Dsub: 1831838-1831932 (+), Divergence to consensus: 35.4%
16. TE-281_Dsub: 1831865-1831986 (-), Divergence to consensus: 28.2%
17. TE-560_Dsub: 1831931-1832393 (+), Divergence to consensus: 31.5%

Transcription Factor Binding Sites
Lhx8 (Sequence: TTAATTAG (-): 1829183)
Lhx8 (Sequence: TTAATTAG (-): 1830190)
Rhox11 (Sequence: TGGTGTAAA (+): 1826238)
POU5F1 (Sequence: ATGCAAA (+): 1825033)
FOXO3_mmu (Sequence: TGTTTTCC (-): 1825191)
FOXO3_mmu (Sequence: TGTTTTGA (-): 1828559)
FOXO3_mmu (Sequence: TGTTTTGC (-): 1829225)
FOXO3_mmu (Sequence: TGTTTTGC (-): 1829318)
Nobox (Sequence: TAATTAGC (+): 1829184)
RHOXF1 (Sequence: AGCTTA (-): 1826199)
RHOXF1 (Sequence: GGCTCA (-): 1826968)
RHOXF1 (Sequence: AGCTTA (-): 1827906)
RHOXF1 (Sequence: GGATCA (-): 1827913)
RHOXF1 (Sequence: AGATCA (-): 1828212)
RHOXF1 (Sequence: GGATTA (-): 1828592)
RHOXF1 (Sequence: AGATCA (-): 1829114)
RHOXF1 (Sequence: GGATCA (-): 1829138)
RHOXF1 (Sequence: GGCTTA (-): 1830954)
RHOXF1 (Sequence: GGATCA (-): 1831441)
RHOXF1 (Sequence: GGCTCA (-): 1831604)
RHOXF1 (Sequence: AGCTCA (-): 1831738)
Sox5 (Sequence: ATTGTT (+): 1824924)
Sox5 (Sequence: ATTGTT (+): 1827821)
Nobox (Sequence: GCTAATTA (-): 1825887)
Nobox (Sequence: ACTAATTA (-): 1825915)
Nobox (Sequence: AGTAATTA (-): 1826038)
Nobox (Sequence: AGTAATTA (-): 1826083)
Nobox (Sequence: GGTAATTA (-): 1830519)
Mybl1_1 (Sequence: AACCGTTA (+): 1827184)
Mybl1_1 (Sequence: AACCGTTA (+): 1831823)
Mybl1_1 (Sequence: TAACGGTT (-): 1827421)
RHOXF1 (Sequence: TAAGCT (+): 1824797)
RHOXF1 (Sequence: TGATCC (+): 1824860)
RHOXF1 (Sequence: TGATCT (+): 1824884)
RHOXF1 (Sequence: TAAGCT (+): 1825762)
RHOXF1 (Sequence: TAAGCT (+): 1825779)
RHOXF1 (Sequence: TAAGCT (+): 1826197)
RHOXF1 (Sequence: TAAGCT (+): 1826734)
RHOXF1 (Sequence: TAAGCT (+): 1826825)
RHOXF1 (Sequence: TGATCC (+): 1826888)
RHOXF1 (Sequence: TGATCT (+): 1826912)
RHOXF1 (Sequence: TGATCT (+): 1828499)
RHOXF1 (Sequence: TGAGCC (+): 1828881)
RHOXF1 (Sequence: TGAGCC (+): 1829006)
RHOXF1 (Sequence: TAAGCT (+): 1831368)
RHOXF1 (Sequence: TGATCC (+): 1831431)
RHOXF1 (Sequence: TAATCC (+): 1831448)
RHOXF1 (Sequence: TAATCC (+): 1831453)
RHOXF1 (Sequence: TAATCC (+): 1831465)
RHOXF1 (Sequence: TGATCC (+): 1831478)
RHOXF1 (Sequence: TGATCT (+): 1831492)
RHOXF1 (Sequence: TGATCC (+): 1831682)
RHOXF1 (Sequence: TGATCT (+): 1832157)
Rhox11 (Sequence: TATACACCG (-): 1825339)
Gata4 (Sequence: AGATAAG (-): 1829059)
Gata4 (Sequence: GTTATCT (+): 1828709)
Sox5 (Sequence: AACAAT (-): 1827306)
Sox5 (Sequence: AACAAT (-): 1830617)
Sox5 (Sequence: AACAAT (-): 1830826)