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Ring attractor dynamics in the Drosophila central brain

Posted on 2017-11-30 - 16:34 authored by Sung Soo Kim
Ring attractors are a class of recurrent networks hypothesized to underlie the representation of heading direction. Such network structures, schematized as a ring of neurons whose connectivity depends on their heading preferences, can sustain a bump-like activity pattern whose location can be updated by continuous shifts along either turn direction. We recently reported that a population of fly neurons represents the animal’s heading via bump-like activity dynamics. We combined two-photon calcium imaging in head-fixed flying flies with optogenetics to overwrite the existing population representation with an artificial one, which was then maintained by the circuit with naturalistic dynamics. A network with local excitation and global inhibition enforces this unique and persistent heading representation. Ring attractor networks have long been invoked in theoretical work; our study provides physiological evidence of their existence and functional architecture.
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All source code and data to reproduce the results can be found in this collection.


1. Download the codes

ringattractor.zip (0.8MB)

After extraction, please read

README.MD
License, Data Agreement.md


2. Download preprocessed data

01._visual_environments.zip (2GB)
04._powerbox_bump_shifting.zip (5.6GB)
10._powerbox-flow2.zip (6.4GB)
12._powerbox-behavior03.zip (1.8GB)

Extract under "ringattractor/processed_data" directory
The underbars, '_', if any, should be replaced with blank spaces, ' ', for the directory names.


3. Download raw data if wanted

01._visual_environments.zip (96.6GB)
04._powerbox_bump_shifting.zip (120GB)
10._powerbox-flow2.zip (129GB)
12._powerbox-behavior03.zip (40.7GB)

Extract under "ringattractor/raw_data" directory.
The underbars, '_', if any, should be replaced with blank spaces, ' ', for the directory names.

** The data size (~450GB) is extremely large.


4. Ring attractor simulation codes and Bayesian sampling codes

Available as a Supplementary Material at the Science website, and at github ( https://github.com/hrouault/RingAttractor ).

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