Atlas of Variant Age
Posted on 2018-09-18 - 15:56 authored by Patrick K. Albers
The Atlas of Variant Age for the human genome currently contains >16 million variants dated using the Genealogical Estimation of Variant Age (GEVA) method, using data from the 1000 Genomes Project (TGP) and from the Simons Genome Diversity Project (SGDP). Age was estimated for variants across all autosomes (Chromosomes 1-22), and separately for TGP and SGDP. In TGP, Chromosome 20 is complete (except singletons and sample allele frequency >99%), with lower numbers for the other chromosomes. In SGDP, all variants across autosomes were dated (except singletons and sample allele frequency >99%). Each variant was analysed with sampling limits of 500 concordant or discordant haplotype pairs (TGP), or 100 concordant or discordant pairs (SGDP). Results of these pairwise analyses are available on request.
This resource contains all data as presented in the preprint:
Dating genomic variants and shared ancestry in population-scale sequencing data
Patrick K. Albers and Gil McVean
doi: https://doi.org/10.1101/416610
(See further references therein.)
The resource is currently being extended (>40 million variants genome-wide) to become available for final publication.
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Albers, Patrick K.; McVean, Gil (2018). Atlas of Variant Age. figshare. Collection. https://doi.org/10.6084/m9.figshare.c.4235771.v1
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