Andreas Sjödin

Publications

• Alphacoronavirus in a Daubenton’s Myotis Bat (Myotis daubentonii) in Sweden
• Targeting the gut-lung axis by synbiotic feeding to infants in a randomized controlled trial
• Phylogeographical pattern of Francisella tularensis in a nationwide outbreak of tularaemia in Norway, 2011
• Genomic analyses of Francisella tularensis strains confirm disease transmission from drinking water sources, Turkey, 2008, 2009 and 2012
• The Distribution of Francisella-like Bacteria Associated with Coastal Waters in Norway
• Co-Occurrence of Francisella, Spotted Fever Group Rickettsia, and Midichloria in Avian-Associated Hyalomma rufipes
• Community-led, integrated, reproducible multi-omics with anvi’o
• Complete Genome Sequences of Allofrancisella inopinata SYSU YG23 and Allofrancisella frigidaquae SYSU 10HL1970, Isolated from Water from Cooling Systems in China
• Trans-Golgi network localized ECHIDNA/Ypt interacting protein complex is required for the secretion of cell wall polysaccharides in Arabidopsis.
• Draft genome sequence of Francisella tularensis subsp. holarctica BD11-00177.
• The phylogeographic pattern of Francisella tularensis in Sweden indicates a Scandinavian origin of Eurosiberian tularaemia.
• Indigenous Infection with Francisella tularensis holarctica in The Netherlands.
• Bipolar Biogeographical Distribution of Parafrancisella Bacteria Carried by the Ciliate Euplotes
• Predators and nutrient availability favor protozoa-resisting bacteria in aquatic systems
• Global expression profiling in leaves of free-growing aspen
• The SEQanswers wiki: A wiki database of tools for high-throughput sequencing analysis
• Increased knowledge of Francisella genus diversity highlights the benefits of optimised DNA-based assays
• A cross-species transcriptomics approach to identify genes involved in leaf development
• Orthogonal projections to latent structures as a strategy for microarray data normalization
• Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish
• Whole-genome sequencing reveals distinct mutational patterns in closely related laboratory and naturally propagated Francisella tularensis strains
• The control of autumn senescence in European aspen1[w][OA]
• Local and systemic transcriptome responses to herbivory and jasmonic acid in Populus
• A unique program for cell death in xylem fibers of Populus stem
• Growth-phase-dependent gene expression profiling of poplar (Populus alba × Populus tremula var. glandulosa) suspension cells
• Environmental and hormonal regulation of the activity-dormancy cycle in the cambial meristem involves stage-specific modulation of transcriptional and metabolic networks
• Molecular targets of elevated [CO2] in leaves and stems of Populus deltoides: Implications for future tree growth and carbon sequestration
• MASQOT-GUI: Spot quality assessment for the two-channel microarray platform
• Abundantly and rarely expressed Lhc protein genes exhibit distinct regulation patterns in plants
• Analysis of global changes in gene expression during activity-dormancy cycle in hybrid aspen apex
• The Populus Genome Integrative Explorer (PopGenIE): A new resource for exploring the Populus genome
• Scaffolding of a bacterial genome using MinION nanopore sequencing
• The Plant Genome Integrative Explorer Resource: PlantGenIE.org
• Components acting downstream of short day perception regulate differential cessation of cambial activity and associated responses in early and late clones of hybrid poplar
• The need for high-quality whole-genome sequence databases in microbial forensics.
• Eight New Genomes and Synthetic Controls Increase the Accessibility of Rapid Melt-MAMA SNP Typing of Coxiella burnetii.
• Genome sequence of Francisella tularensis subspecies holarctica strain FSC200, isolated from a child with tularemia.
• Real-time PCR assays targeting unique DNA sequences of fish-pathogenic Francisella noatunensis subspecies noatunensis and orientalis.
• Francisella tularensis subsp. tularensis Group A.I, United States.
• CanSNPer: a hierarchical genotype classifier of clonal pathogens.
• An improved multiple-locus variable-number of tandem repeat analysis (MLVA) for the fish pathogen Francisella noatunensis using capillary electrophoresis.
• Reassessing the Role of Type II Toxin-Antitoxin Systems in Formation of Escherichia coli Type II Persister Cells
• Hematopoietic Age at Onset of Triple-Negative Breast Cancer Dictates Disease Aggressiveness and Progression
• doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows
• Reclassification of Francisella noatunensis subsp. orientalis Ottem et al. 2009 as Francisella orientalis sp. nov., Francisella noatunensis subsp. chilensis subsp. nov. and emended description of Francisella noatunensis
• Complete Genome Sequence of Francisella halioticida Type Strain DSM 23729 (FSC1005)
• A whole-genome sequenced control population in northern Sweden reveals subregional genetic differences
• Complete Genome Sequence of Francisella tularensis subsp. holarctica Strain A271_1 (FDC408), Isolated from a Eurasian Beaver (Castor fiber)
• Reorganized Genomic Taxonomy of Francisellaceae Enables Design of Robust Environmental PCR Assays for Detection of Francisella tularensis
• Complete Genome Sequence of Francisella sp. Strain LA11-2445 (FDC406), a Novel Francisella Species Isolated from a Human Skin Lesion
• A transcriptional timetable of autumn senescence.
• UPSC-BASE - Populus transcriptomics online
• The genetics and genomics of the drought response in Populus
• Protease gene families in Populus and Arabidopsis
• The transcriptome of Populus in elevated CO2
• MASQOT: A method for cDNA microarray spot quality control
• A transcriptional timetable of autumn senescence.
• Nanometa Live: A User-friendly application for Real-time Metagenomic Data Analysis and Pathogen Identification
• Completed genome and emergence scenario of the multidrug-resistant nosocomial pathogen Staphylococcus epidermidis ST215