James Clark

Publications

• Uncertain-tree: discriminating among competing approaches to the phylogenetic analysis of phenotype data
• Constraining the timing of whole genome duplication in plant evolutionary history
• Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al.
• Genome evolution of ferns: evidence for relative stasis of genome size across the fern phylogeny
• Are the genomes of royal ferns really frozen in time? Evidence for coinciding genome stability and limited evolvability in the royal ferns
• Size is not everything: rates of genome size evolution, notC-value, correlate with speciation in angiosperms
• The timescale of early land plant evolution
• Integrated genomic and fossil evidence illuminates life’s early evolution and eukaryote origin
• Whole-Genome Duplication and Plant Macroevolution.
• Evolution of metazoan morphological disparity.
• Origin of horsetails and the role of whole-genome duplication in plant macroevolution
• Senecio as a model system for integrating studies of genotype, phenotype and fitness
• Adaptive divergence generates distinct plastic responses in two closely related Senecio species
• Hidden genetic variation in plasticity provides the potential for rapid adaptation to novel environments
• An estimate of the deepest branches of the tree of life from ancient vertically-evolving genes
• Adaptive divergence generates distinct plastic responses in two closely related  Senecio  species
• Hagfish genome illuminates vertebrate whole genome duplications and their evolutionary consequences
• Genome evolution in plants and the origins of innovation
• Evolution of phenotypic disparity in the plant kingdom
• Divergent evolutionary trajectories of bryophytes and tracheophytes from a complex common ancestor of land plants
• Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences
• An estimate of the deepest branches of the tree of life from ancient vertically evolving genes
• Constraining Whole-Genome Duplication Events in Geological Time
• A crown-group cnidarian from the Ediacaran of Charnwood Forest, UK
• The origin and evolution of stomata
• Accurate timetrees do indeed require accurate calibrations
• Plant evolution: Streptophyte multicellularity, ecology, and the acclimatisation of plants to life on land
• Molecular Dating of the Teleost Whole Genome Duplication (3R) Is Compatible With the Expectations of Delayed Rediploidization
• The nature of the last universal common ancestor and its impact on the early Earth system
• Environmental effects on genetic variance are likely to constrain adaptation in novel environments
• Molecular dating of the teleost whole genome duplication (3R) is compatible with the expectations of delayed rediploidization
• Genomic changes and stabilization following homoploid hybrid speciation of the Oxford ragwort Senecio squalidus
• Assembling the picture of stomatal evolution
• Decoding the evolution of dumbbell stomata: Insights from the developmental genes of sedges and grasses
• A geological timescale for bacterial evolution and oxygen adaptation
• Sustainable Microwave-Assisted Synthesis of Medium- and Long-Chain Alkyl Levulinates from Biomass-Derived Levulinic Acid