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Aleksey Penin

Publications

  • Crossing-over in a hypervariable species preferentially occurs in regions of high local similarity
  • Spatial organization of house-keeping genes in interphase nuclei
  • [Structure and evolution of junctions between inverted repeat and small single copy regions of chloroplast genome in non-core Caryophyllales].
  • Some characteristics of genetic control of Fagopyrum esculentum flower development
  • Bract reduction in Cruciferae: Possible genetic mechanisms and evolution
  • Interaction of the BRACTEA gene with the TERMINAL FLOWER1, LEAFY, and APETALA1 genes during inflorescence and flower development in Arabidopsis thaliana
  • Spatial organization of housekeeping genes in interphase nuclei
  • Comparative analysis of gene expression level by quantitative real-time PCR has limited application in objects with different morphology
  • Comparative genome analysis of Pseudogymnoascus spp. reveals primarily clonal evolution with small genome fragments exchanged between lineages
  • Mitochondrial genomes of kinorhyncha: TrnM duplication and new gene orders within animals
  • Transcriptome-based identification of PDGFA as a candidate secreted biomarker for hepatocellular carcinoma
  • An update to database TraVA: Organ-specific cold stress response in Arabidopsis thaliana
  • Interaction of the BRACTEA gene with the TERMINAL FLOWER1, LEAFY, and APETALA1 genes during inflorescence and flower development in Arabidopsis thaliana
  • Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge
  • Exploring the limits for reduction of plastid genomes: A case study of the mycoheterotrophic orchids Epipogium aphyllum and Epipogium roseum
  • Genome characterization of a pathogenic porcine rotavirus B strain identified in Buryat republic, Russia in 2015
  • The plastid genome of mycoheterotrophic monocot petrosavia stellaris exhibits both gene losses and multiple rearrangements
  • FACS isolation of viable cells in different cell cycle stages from asynchronous culture for RNA sequencing
  • The Genome of Intoshia linei Affirms Orthonectids as Highly Simplified Spiralians
  • Evolution of the genome 3D organization: Comparison of fused and segregated globin gene clusters
  • RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants
  • Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
  • Comparative analysis of developmental transcriptome maps of arabidopsis thaliana and solanum lycopersicum
  • Whole transcriptome profiling of adult and infective stages of the trematode Opisthorchis felineus
  • Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki
  • Complete plastid genome of the recent holoparasite lathraea squamaria reveals earliest stages of plastome reduction in orobanchaceae
  • Paratrypanosoma is a novel early-branching trypanosomatid
  • Genetic and morphological analysis of floral homeotic mutants tepal-like bract and fagopyrum apetala of Fagopyrum esculentum
  • NGS-based identification of druggable alterations and signaling pathways - Hepatocellular carcinoma case report
  • Sequencing and analysis of plastid genome in mycoheterotrophic orchid Neottia nidus-avis
  • Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale - A wild ancestor of cultivated buckwheat
  • Correlation between number and position of floral organs in Arabidopsis
  • High-quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution
  • Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila
  • Interplay between RNA interference and heat shock response systems in Drosophila melanogaster
  • The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences
  • Comparative analysis of plastid genomes of non-photosynthetic Ericaceae and their photosynthetic relatives
  • De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum)
  • Transcriptome profile of yeast reveals the essential role of PMA2 and uncharacterized gene YBR056W-A (MNC1) in adaptation to toxic manganese concentration
  • The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes
  • Translatome and transcriptome analysis of TMA20 (MCT-1) and TMA64 (eIF2D) knockout yeast strains
  • A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling
  • Structure and evolution of junctions between inverted repeat and small single copy regions of chloroplast genome in non-core Caryophyllales
  • RNA-seq analysis of an apical meristem time series reveals a critical point in Arabidopsis thaliana flower initiation
  • Fast Evolution from Precast Bricks: Genomics of Young Freshwater Populations of Threespine Stickleback Gasterosteus aculeatus
  • Extraordinary genetic diversity in a wood decay mushroom
  • Effect of method of deduplication on estimation of differential gene expression using RNA-seq
  • Transcriptome-based phylogeny of endemic Lake Baikal amphipod species flock: fast speciation accompanied by frequent episodes of positive selection
  • A sustained deficiency of mitochondrial respiratory complex III induces an apoptotic cell death through the p53-mediated inhibition of pro-survival activities of the activating transcription factor 4
  • Selection and validation of reference genes for quantitative real-time PCR in buckwheat (Fagopyrum esculentum) based on transcriptome sequence data
  • The LEPIDIUM-LIKE gene determines stem cell activity during formation of petals and stamens in Arabidopsis thaliana flowers
  • A New BRACTEa (BRA) Gene Controlling the Formation of an Indeterminate Bractless Inflorescence in Arabidopsis thaliana
  • Basic principles of terminal flower formation
  • Determination of type and spatial pattern formation of flower organs: dynamic model of development
  • Unusual alternations of floral organs in Paeonia: structure and possible mechanism of formation
  • The role of gene TEPAL-LIKE BRACT (TLB) in the separation between the bracts and perianth in Fagopyrum esculentum Moench.
  • Spatial pattern formation of Arabidopsis thaliana flower. Mathematical modeling
  • Effect of the ABRUPTUS/PINOID gene on expression of the LEAFY gene in Arabidopsis thaliana
  • Structure of flower in Arabidopsis thaliana: spatial pattern formation,Struktura tsvetka Arabidopsis thaliana (L.) Heynh.: razmetka polozheniia organov.
  • The principles of data formalization for building the genetic-morphological model of shoot development in flowering plants,Printsipy formalizatsii dannykh dlia postroeniia genetiko-morfologicheskoi modeli razvitiia pobega tsvetkovykh rastenii.
  • A new bractea (BRA) gene controlling the formation of an indeterminate bractless inflorescence in arabidopsis thaliana
  • Phylogeny of flowering plants by the chloroplast genome sequences: In search of a "lucky gene"
  • Plant genomes and models of development
  • Effect of the ABRUPTUS/PINOID gene on expression of the LEAFY gene in Arabidopsis thaliana
  • Unusual alternations of floral organs in Paeonia: Structure and possible mechanism of formation
  • Spatial pattern formation in the flower of Arabidopsis thaliana: Mathematical modeling
  • The role of gene tepal-like bract (TLB) in the separation between the bracts and perianth in Fagopyrum esculentum Moench.
  • Basic principles of terminal flower formation
  • A mathematical model of genetic control of determination of floral organ identity in Arabidopsis thaliana
  • Type specification and spatial pattern formation of floral organs: A dynamic development model

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Co-workers & collaborators

Maria Logacheva

Maria Logacheva

Olga Vakhrusheva

Olga Vakhrusheva

Aleksey Penin's public data