Yalbi Balderas

Publications

• Improving biocuration of microRNAs in diseases: a case study in idiopathic pulmonary fibrosis
• An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database
• R-spondin 2 is Upregulated in Idiopathic Pulmonary Fibrosis and Affects Fibroblasts Behavior
• Transforming growth factor beta 1 induces methylation changes in lung fibroblasts.
• PulmonDB: a curated lung disease gene expression database.
• Regulation by transcription factors in bacteria: Beyond description
• Inflammatory pathways are upregulated in the nasal epithelium in patients with idiopathic pulmonary fibrosis.
• Accelerated aging induced by deficiency of Zmpste24 protects old mice to develop bleomycin-induced pulmonary fibrosis.
• RegulonDB v8.0: Omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more
• Mathematical modeling of the apo and holo transcriptional regulation in Escherichia coli
• Assisted curation of regulatory interactions and growth conditions of OxyR in E. coli K-12.
• Transcription Factors in Escherichia coli Prefer the Holo Conformation
• The functional landscape bound to the transcription factors of Escherichia coli K-12
• Overview of the interactive task in BioCreative V
• Clinical and Immunological Factors That Distinguish COVID-19 From Pandemic Influenza A(H1N1)
• Transcriptomic profile of the mice aging lung is associated with inflammation and apoptosis as important pathways
• Circulating microRNA Signature Associated to Interstitial Lung Abnormalities in Respiratory Asymptomatic Subjects
• Assisted curation of regulatory interactions and growth conditions of OxyR in E. Colik-12
• Cyclic Attractors Are Critical for Macrophage Differentiation, Heterogeneity, and Plasticity.
• An Epistatic Network Describes oppA and glgB as Relevant Genes for Mycobacterium tuberculosis.
• Lack of ZNF365 Drives Senescence and Exacerbates Experimental Lung Fibrosis
• Functional Repercussions of Hypoxia-Inducible Factor-2α in Idiopathic Pulmonary Fibrosis
• Effect of Hypoxia in the Transcriptomic Profile of Lung Fibroblasts from Idiopathic Pulmonary Fibrosis
• CD4+ T Cell Regulatory Network Underlies the Decrease in Th1 and the Increase in Anergic and Th17 Subsets in Severe COVID-19
• Administration of Tamoxifen Can Regulate Changes in Gene Expression during the Acute Phase of Traumatic Spinal Cord Injury