Vanika Garg

Publications

• Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits.
• The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication.
• InDel markers: An extended marker resource for molecular breeding in chickpea.
• Chromosome-length genome assemblies of six legume species provide insights into genome organization, evolution, and agronomic traits for crop improvement
• Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea
• Analysis of Small RNA Sequencing Data in Plants
• A chickpea genetic variation map based on the sequencing of 3,366 genomes
• Comprehensive analysis and identification of drought-responsive candidate NAC genes in three semi-arid tropics (SAT) legume crops
• Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement
• Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation
• Correction to: Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.) (Molecular Breeding, (2018), 38, 1, (7), 10.1007/s11032-017-0764-z)
• Genome-wide discovery and deployment of insertions and deletions markers provided greater insights on species, genomes, and sections relationships in the genus arachis
• Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea
• Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms
• Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea
• Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs
• Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement
• Genetic diversity patterns and heterosis prediction based on SSRs and SNPs in hybrid parents of pearl millet
• Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes (Nature, (2021), 599, 7886, (622-627), 10.1038/s41586-021-04066-1)
• The genome of Haberlea rhodopensis provides insights into the mechanisms for tolerance to multiple extreme environments
• scRNA-seq reveals the mechanism of Fatty Acid Desaturase 2 mutation to repress leaf growth in peanut (Arachis hypogaea L.)
• Comprehensive transcriptome profiling uncovers molecular mechanisms and potential candidate genes associated with heat stress response in Chickpea
• RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.)
• The RNA-Seq-based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio-temporal changes associated with growth and development
• Corrigendum: Genetic variation in CaTIFY4b contributes to drought adaptation in chickpea
• Back to wild relatives for future breeding through super-pangenome
• Genomics-driven application of plant genetic resources for sustainable agriculture
• A single‐nucleus resolution atlas of transcriptome and chromatin accessibility for peanut (Arachis Hypogaea L.) leaves
• Single-cell RNA-seq in phytohormone signaling: A promising future
• Unique regulatory network of dragon fruit simultaneously mitigates the effect of vanadium pollutant and environmental factors
• Near‐gapless genome assemblies of Williams 82 and Lee cultivars for accelerating global soybean research
• Transcriptome analysis of chickpea during heat stress unveils the signatures of long intergenic non-coding RNAs (lincRNAs) and mRNAs in the heat-QTL region
• Unlocking plant genetics with telomere-to-telomere genome assemblies
• Haplotype-based pangenomes reveal genetic variations and climate adaptations in moso bamboo populations
• Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.)
• ScRNA-seq reveals dark- and light-induced differentially expressed gene atlases of seedling leaves in Arachis hypogaea L
• Celebrating Professor Rajeev K. Varshney's transformative research odyssey from genomics to the field on his induction as Fellow of the Royal Society
• QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.)
• Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea
• Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea
• A Ralstonia effector RipAU impairs peanut AhSBT 1.7 immunity for pathogenicity via AhPME ‐mediated cell wall degradation
• Erratum: Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments
• Genome-Wide identification, characterization, and expression analysis of small RNA biogenesis purveyors reveal their role in regulation of biotic stress responses in three legume crops
• Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens
• Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments
• Transcriptome profiling reveals the expression and regulation of genes associated with Fusarium wilt resistance in chickpea (Cicer arietinum L.)
• Construction of genotyping-by-sequencing based high-density genetic maps and QTL mapping for fusarium wilt resistance in pigeonpea
• A genomic variation map provides insights into peanut diversity in China and associations with 28 agronomic traits
• Natural variation in the chickpea metabolome under drought stress
• Pan-genome bridges wheat structural variations with habitat and breeding
• Gene Expression and yeast Two-Hybrid studies of 1R-MYB transcription factor mediating drought stress response in chickpea (Cicer arietinum L.)
• First‐generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations
• Next‐generation sequencing for identification of candidate genes for Fusarium wilt and sterility mosaic disease in pigeonpea ( C ajanus cajan )
• Genome-wide survey and expression analysis of F-box genes in chickpea
• Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don
• QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea
• Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)
• Genome-wide dissection of AP2/ERF and HSP90 gene families in five legumes and expression profiles in chickpea and pigeonpea
• Whole genome re-sequencing reveals genome-wide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.)
• A new set of ESTs from chickpea (Cicer arietinum L.) embryo reveals two novel F-box genes, CarF-box_PP2 and CarF-box_LysM, with potential roles in seed development
• Spatial omics for accelerating plant research and crop improvement