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Torsten Seemann

Lead Bioinformatician (Bioinformatics and computational biology not elsewhere classified)

Melbourne, AUSTRALIA

Publications

  • Attachment and Invasion of Neisseria meningitidis to Host Cells Is Related to Surface Hydrophobicity, Bacterial Cell Size and Capsule DOI: 10.1371/journal.pone.0055798
  • Bioinformatic prediction of the exportome of Babesia bovis and identification of novel proteins in parasite-infected red blood cells DOI: 10.1016/j.ijpara.2013.01.002
  • Complete genome sequence of the frog pathogen Mycobacterium ulcerans ecovar Liflandii DOI: 10.1128/JB.02132-12
  • Evaluation of 238 antigens of Leptospira borgpetersenii serovar Hardjo for protection against kidney colonisation DOI: 10.1016/j.vaccine.2012.11.028
  • Genome Analysis and Phylogenetic Relatedness of Gallibacterium anatis Strains from Poultry DOI: 10.1371/journal.pone.0054844
  • Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis DOI: 10.1038/ng.2517
  • Outbreak investigation using high-throughput genome sequencing within a diagnostic microbiology laboratory DOI: 10.1128/JCM.03332-12
  • VAGUE: A graphical user interface for the Velvet assembler DOI: 10.1093/bioinformatics/bts664
  • A genomic island in Salmonella enterica ssp. salamae provides new insights on the genealogy of the locus of enterocyte effacement DOI: 10.1371/journal.pone.0041615
  • Colistin-resistant, lipopolysaccharide-deficient Acinetobacter baumannii responds to lipopolysaccharide loss through increased expression of genes involved in the synthesis and transport of lipoproteins, phospholipids, and poly-β-1,6-N-acetylglucosamine DOI: 10.1128/AAC.05191-11
  • Comparative analysis of the first complete Enterococcus faecium genome DOI: 10.1128/JB.00259-12
  • Genome sequences and phylogenetic analysis of K88- and F18- positive porcine enterotoxigenic escherichia coli DOI: 10.1128/JB.06225-11
  • On the origin of Mycobacterium ulcerans, the causative agent of Buruli ulcer DOI: 10.1186/1471-2164-13-258
  • On the origin of Mycobacterium ulcerans, the causative agent of Buruli ulcer DOI: 10.1186/1471-2164-13-258
  • Pathogenomics of Pasteurella multocida DOI: 10.1007/82-2012-203
  • Population genomics and phylogeography of an Australian dairy factory derived lytic bacteriophage DOI: 10.1093/gbe/evs017
  • The lipoprotein LpqW is essential for the mannosylation of periplasmic glycolipids in corynebacteria DOI: 10.1074/jbc.M112.373415
  • Transcriptional Profiling of a Yeast Colony Provides New Insight into the Heterogeneity of Multicellular Fungal Communities DOI: 10.1371/journal.pone.0046243
  • Pathogenesis of leptospirosis: The influence of genomics DOI: 10.1016/j.vetmic.2011.02.055
  • Treatment of Acute Delayed Visceral Hemorrhage After Pancreatic Surgery From Hepatic Arteries with Covered Stents DOI: 10.1007/s11605-010-1260-5
  • Complete genome sequence of Gallibacterium anatis strain UMN179, isolated from a laying hen with peritonitis DOI: 10.1128/JB.05177-11
  • Evolution of multidrug resistance during staphylococcus aureus infection involves mutation of the essential two component regulator WalKR DOI: 10.1371/journal.ppat.1002359
  • Exploring the zoonotic potential of mycobacterium avium subspecies paratuberculosis through comparative genomics DOI: 10.1371/journal.pone.0022171
  • Necrotic enteritis-derived clostridium perfringens strain with three closely related independently conjugative toxin and antibiotic resistance plasmids DOI: 10.1128/mBio.00190-11
  • Pathogenesis of leptospirosis: The influence of genomics DOI: 10.1016/j.vetmic.2011.02.055
  • Pseudomonas aeruginosa AES-1 exhibits increased virulence gene expression during chronic infection of cystic fibrosis lung DOI: 10.1371/journal.pone.0024526
  • TcsL is an essential virulence factor in Clostridium sordellii ATCC 9714 DOI: 10.1128/IAI.00968-10
  • The dominant Australian community-acquired methicillin-resistant Staphylococcus aureus clone ST93-IV [2B] is highly virulent and genetically distinct DOI: 10.1371/journal.pone.0025887
  • vanB E. faeciumSequence Type 203 DOI: 10.1086/656319
  • Regulation of the 18 kDa heat shock protein in Mycobacterium ulcerans: an alpha-crystallin orthologue that promotes biofilm formation DOI: 10.1111/j.1365-2958.2010.07401.x
  • A major role for mammals in the ecology of Mycobacterium ulcerans DOI: 10.1371/journal.pntd.0000791
  • A sustained hospital outbreak of vancomycin-resistant Enterococcus faecium bacteremia due to emergence of vanB E. faecium sequence type 203 DOI: 10.1086/656319
  • Colistin resistance in Acinetobacter baumannii is mediated by complete loss of lipopolysaccharide production DOI: 10.1128/AAC.00834-10
  • Complete genome sequence of Staphylococcus aureus strain JKD6008, an ST239 clone of methicillin-resistant Staphylococcus aureus with intermediate-level vancomycin resistance DOI: 10.1128/JB.00951-10
  • Complete genome sequence of Staphylococcus aureus strain JKD6159, a unique Australian clone of ST93-IV community methicillin-resistant Staphylococcus aureus DOI: 10.1128/JB.00878-10
  • Fis is essential for capsule production in Pasteurella multocida and regulates expression of other important virulence factors DOI: 10.1371/journal.ppat.1000750
  • Regulation of the 18-kDa heat shock protein in Mycobacterium ulcerans: An alpha-crystallin orthologue that promotes biofilm formation DOI: 10.1111/j.1365-2958.2010.07401.x
  • Resequencing the Mycobacterium avium subsp. paratuberculosis K10 genome: Improved annotation and revised genome sequence DOI: 10.1128/JB.00972-10
  • Serological evaluation of mycobacterium ulcerans Antigens identified by comparative genomics DOI: 10.1371/journal.pntd.0000872
  • Single nucleotide polymorphism typing of mycobacterium ulcerans reveals focal transmission of buruli ulcer in a highly endemic Region of Ghana DOI: 10.1371/journal.pntd.0000751
  • Two novel point mutations in clinical Staphylococcus aureus reduce linezolid susceptibility and switch on the stringent response to promote persistent infection DOI: 10.1371/journal.ppat.1000944
  • Escherichia coliStrains Negative for Locus of Enterocyte Effacement DOI: 10.3201/eid1503.080631
  • Mycolactone gene expression is controlled by strong SigA-like promoters with utility in studies of Mycobacterium ulcerans and buruli ulcer DOI: 10.1371/journal.pntd.0000553
  • Shiga toxin-producing Escherichia coli strains negative for locus of enterocyte effacement DOI: 10.3201/eid1502.080631
  • Deciphering the genetic basis for polyketide variation among mycobacteria producing mycolactones DOI: 10.1186/1471-2164-9-462
  • Deciphering the genetic basis for polyketide variation among mycobacteria producing mycolactones DOI: 10.1186/1471-2164-9-462
  • Genome sequence of the saprophyte Leptospira biflexa provides insights into the evolution of Leptospira and the pathogenesis of leptospirosis DOI: 10.1371/journal.pone.0001607
  • Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis DOI: 10.1101/gr.075069.107
  • Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis (Genome Research (2008) 18 (729-741))
  • Genome sequence and identification of candidate vaccine antigens from the animal pathogen Dichelobacter nodosus DOI: 10.1038/nbt1302
  • Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer DOI: 10.1101/gr.5942807
  • Victorian Bioinformatics Consortium: Providing Essential Support for Victorian Science DOI: 10.1142/S0219030306002084
  • Genome reduction in Leptospira borgpetersenii reflects limited transmission potential DOI: 10.1073/pnas.0603979103
  • The Organization of Leptospira at a Genomic Level DOI: 10.1007/978-1-59745-152-9_7
  • Generalised locally adaptive DPCM
  • History-Based Blending of Image Sub-Predictors
  • MML Based Noise Cleaning of Images
  • MML based noise cleaning of images
  • A Genomic Island in Salmonella enterica ssp. salamae Provides New Insights on the Genealogy of the Locus of Enterocyte Effacement DOI: http://dx.doi.org/10.1371/journal.pone.0041615
  • A Major Role for Mammals in the Ecology of Mycobacterium ulcerans DOI: http://dx.doi.org/10.1371/journal.pntd.0000791
  • Attachment and Invasion of Neisseria meningitidis to Host Cells Is Related to Surface Hydrophobicity, Bacterial Cell Size and Capsule DOI: http://dx.doi.org/10.1371/journal.pone.0055798
  • Bioinformatic prediction of the exportome of Babesia bovis and identification of novel proteins in parasite-infected red blood cells DOI: http://dx.doi.org/10.1016/j.ijpara.2013.01.002
  • Evaluation of 238 antigens of Leptospira borgpetersenii serovar Hardjo for protection against kidney colonisation DOI: http://dx.doi.org/10.1016/j.vaccine.2012.11.028
  • Exploring the Zoonotic Potential of Mycobacterium avium Subspecies paratuberculosis through Comparative Genomics DOI: http://dx.doi.org/10.1371/journal.pone.0022171
  • Fis Is Essential for Capsule Production in Pasteurella multocida and Regulates Expression of Other Important Virulence Factors DOI: http://dx.doi.org/10.1371/journal.ppat.1000750
  • On the origin of Mycobacterium ulcerans, the causative agent of Buruli ulcer DOI: http://dx.doi.org/10.1186/1471-2164-13-258
  • Pathogenesis of leptospirosis: The influence of genomics DOI: http://dx.doi.org/10.1016/j.vetmic.2011.02.055
  • Pseudomonas aeruginosa AES-1 Exhibits Increased Virulence Gene Expression during Chronic Infection of Cystic Fibrosis Lung DOI: http://dx.doi.org/10.1371/journal.pone.0024526
  • Serological Evaluation of Mycobacterium ulcerans Antigens Identified by Comparative Genomics DOI: http://dx.doi.org/10.1371/journal.pntd.0000872
  • Shiga Toxin–producingEscherichia coliStrains Negative for Locus of Enterocyte Effacement DOI: http://dx.doi.org/10.3201/eid1503.080631
  • Single Nucleotide Polymorphism Typing of Mycobacterium ulcerans Reveals Focal Transmission of Buruli Ulcer in a Highly Endemic Region of Ghana DOI: http://dx.doi.org/10.1371/journal.pntd.0000751
  • The 18 kDa heat shock protein of M. ulcerans DOI: http://dx.doi.org/10.1111/j.1365-2958.2010.07401.x
  • The Dominant Australian Community-Acquired Methicillin-Resistant Staphylococcus aureus Clone ST93-IV [2B] Is Highly Virulent and Genetically Distinct DOI: http://dx.doi.org/10.1371/journal.pone.0025887
  • Transcriptional Profiling of a Yeast Colony Provides New Insight into the Heterogeneity of Multicellular Fungal Communities DOI: http://dx.doi.org/10.1371/journal.pone.0046243
  • Two Novel Point Mutations in Clinical Staphylococcus aureus Reduce Linezolid Susceptibility and Switch on the Stringent Response to Promote Persistent Infection DOI: http://dx.doi.org/10.1371/journal.ppat.1000944
  • Victorian Bioinformatics Consortium: Providing Essential Support for Victorian Science DOI: http://dx.doi.org/10.1142/s0219030306002084

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