Stian Soiland-Reyes

Technical Architect
Manchester, UK
Stian works in School of Computer Science, at the University of Manchester on the myGrid project as a technical software architect and researcher. Stian is or has been working on Taverna (scientific workflow system), Wf4Ever (digital preservation), myExperiment (sharing scientific workflows), provenance (where did things come from) and annotations (who said what).

Publications

  • CaGrid Workflow Toolkit: A taverna based workflow tool for cancer grid DOI: 10.1186/1471-2105-11-542
  • Taverna, Reloaded DOI: 10.1007/978-3-642-13818-8_33
  • Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data DOI: 10.1186/1471-2105-9-334
  • Automated manipulation of systems biology models using libSBML within Taverna workflows DOI: 10.1093/bioinformatics/btm578
  • Fostering Scientific Workflow Preservation through Discovery of Substitute Services DOI: 10.1109/eScience.2011.22
  • Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data DOI: 10.1186/1471-2105-9-334
  • Scientific Workflows as Services in caGrid: A Taverna and gRAVI Approach DOI: 10.1109/ICWS.2009.19
  • Workflow forever DOI: 10.1145/2166896.2166909
  • Taverna Mobile: Taverna workflows on Android ARXIV: http://arxiv.org/abs/1309.2787
  • The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. DOI: 10.1093/nar/gkt328
  • A workflow PROV-corpus based on taverna and wings DOI: 10.1145/2457317.2457376
  • PAV ontology: provenance, authoring and versioning DOI: 10.1186/2041-1480-4-37
  • Web Annotation as a First-Class Object
  • ORE User Guide - Resource Map Implementation in JSON-LD 0.9 DOI: 10.5281/zenodo.11293
  • Taverna Workbench Core 2.5.0 DOI: 10.5281/ZENODO.10190
  • Taverna Player Version 0.10.0 DOI: 10.5281/ZENODO.12505
  • Structuring research methods and data with the research object model: genomics workflows as a case study DOI: 10.1186/2041-1480-5-41
  • scufl2-wfdesc 0.3.7 DOI: 10.5281/ZENODO.10650
  • ro-combine-archive DOI: 10.5281/ZENODO.10439
  • RO Bundle API 0.5.0 DOI: 10.5281/ZENODO.12703
  • RO Bundle 0.4.1 DOI: 10.5281/ZENODO.10440
  • Research Object Bundle 1.0 DOI: 10.5281/ZENODO.12586
  • owlapi-jsonld 0.1.0 DOI: 10.5281/ZENODO.10561
  • owl2jsonld 0.2.0 DOI: 10.5281/ZENODO.10563
  • Community-driven development for computational biology at Sprints, Hackathons and Codefests DOI: 10.1186/1471-2105-15-s14-s7
  • COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project DOI: 10.1186/s12859-014-0369-z
  • clj-owlapi 0.3.0 DOI: 10.5281/ZENODO.10564
  • A workflow PROV-corpus based on taverna and wings (Datasets) DOI: 10.5281/ZENODO.11607
  • Taverna Mobile: Taverna workflows on Android DOI: 10.14806/ej.19.b.727
  • Web Annotation as a First-Class Object DOI: 10.1109/mic.2013.123

Stian's public data