Pascale Daran-Lapujade

Publications

• A versatile, efficient strategy for assembly of multi-fragment expression vectors in Saccharomyces cerevisiae using 60 bp synthetic recombination sequences
• Identity of the Growth-Limiting Nutrient Strongly Affects Storage Carbohydrate Accumulation in Anaerobic Chemostat Cultures of Saccharomyces cerevisiae
• Quantitative Physiology of Saccharomyces cerevisiae at Near-Zero Specific Growth Rates.
• Proteome adaptation of saccharomyces cerevisiae to severe calorie restriction in retentostat cultures
• The genome sequence of the popular hexose-transport-deficient Saccharomyces cerevisiae strain EBY.VW4000 reveals LoxP/Cre-induced translocations and gene loss.
• A Minimal Set of Glycolytic Genes Reveals Strong Redundancies in Saccharomyces cerevisiae Central Metabolism
• Oxygen availability strongly affects chronological lifespan and thermotolerance in batch cultures of Saccharomyces cerevisiae
• Growth-rate dependency of de novo resveratrol production in chemostat cultures of an engineered Saccharomyces cerevisiae strain
• Physiological and Transcriptional Responses of Different Industrial Microbes at Near-Zero Specific Growth Rates
• Pichia pastoris exhibits high viability and low maintenance-energy requirement at near-zero specific growth rates.
• Saccharomyces cerevisiae x Saccharomyces eubayanus interspecific hybrid, the 2 best of both worlds and beyond
• CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae
• Transcriptome-Based Characterization of Interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp bulgaricus in Lactose-Grown Chemostat Cocultures
• Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data
• One-step assembly and targeted integration of multigene constructs assisted by the I-SceI meganuclease in Saccharomyces cerevisiae
• To divide or not to divide: A key role of Rim15 in calorie-restricted yeast cultures
• An atypical PMR2 locus is responsible for hypersensitivity to sodium and lithium cations in the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D
• De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology
• Physiological responses of Saccharomyces cerevisiae to industrially relevant conditions: Slow growth, low pH, and high CO 2 levels
• FnCpf1: a novel and efficient genome editing tool for Saccharomyces cerevisiae
• A protocol for introduction of multiple genetic modifications in Saccharomyces cerevisiae using CRISPR/Cas9.
• Oxygen availability strongly affects chronological lifespan and thermotolerance in batch cultures of Saccharomyces cerevisiae.
• Efficient simultaneous excision of multiple selectable marker cassettes using I-SceI-induced double-strand DNA breaks in Saccharomyces cerevisiae
• Predicting metabolic fluxes using gene expression differences as constraints
• Contribution of Complex I NADH Dehydrogenase to Respiratory Energy Coupling in Glucose-Grown Cultures of Ogataea parapolymorpha
• A toolkit for rapid CRISPR-SpCas9 assisted construction of hexose-transport-deficient Saccharomyces cerevisiae strains
• The Crabtree Effect Shapes the Saccharomyces cerevisiae Lag Phase during the Switch between Different Carbon Sources
• A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae
• Multiplex genome editing of microorganisms using CRISPR-Cas
• The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae
• Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures
• amdSYM , a new dominant recyclable marker cassette for Saccharomyces cerevisiae
• Similar temperature dependencies of glycolytic enzymes: an evolutionary adaptation to temperature dynamics?
• A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions
• Measuring enzyme activities under standardized in vivo-like conditions for systems biology
• Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains
• Energetic limits to metabolic flexibility: responses of Saccharomyces cerevisiae to glucose-galactose transitions
• Quantitative Physiology of Saccharomyces cerevisiae at Near-Zero Specific Growth Rates
• Physiological and transcriptional responses of anaerobic chemostat cultures of Saccharomyces cerevisiae subjected to diurnal temperature cycles
• Extreme calorie restriction and energy source starvation in Saccharomyces cerevisiae represent distinct physiological states
• A proteome-integrated, carbon source dependent genetic regulatory network in Saccharomyces cerevisiae
• Extreme calorie restriction in yeast retentostats induces uniform non-quiescent growth arrest.
• Maintenance-energy requirements and robustness of Saccharomyces cerevisiae at aerobic near-zero specific growth rates.
• Pathway swapping: Toward modular engineering of essential cellular processes.
• A supernumerary designer chromosome for modular in vivo pathway assembly in Saccharomyces cerevisiae
• gEL DNA, a cloning- and PCR-free method for CRISPR-based multiplexed genome editing
• Pichia pastoris Exhibits High Viability and a Low Maintenance Energy Requirement at Near-Zero Specific Growth Rates
• Shot-gun proteomics: why thousands of unidentified signals matter
• Top-down, knowledge-based genetic reduction of yeast central carbon metabolism
• Modular, synthetic chromosomes as new tools for large scale engineering of metabolism
• Glutamate as an inhibitor of phosphoenolpyruvate carboxylase activity in Corynebacterium glutamicum
• Proteome analysis of yeast response to various nutrient limitations
• Control of the Glycolytic Flux in Saccharomyces cerevisiae Grown at Low Temperature: A MULTI-LEVEL ANALYSIS IN ANAEROBIC CHEMOSTAT CULTURES
• The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels
• Dynamics of Glycolytic Regulation during Adaptation of Saccharomyces cerevisiae to Fermentative Metabolism
• Physiological and transcriptional responses of Saccharomyces cerevisiae to zinc limitation in chemostat cultures.
• Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity.
• Comparative genotyping of the Saccharomyces cerevisiae laboratory strains S288C and CEN.PK113-7D using oligonucleotide microarrays.
• Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae.
• Reproducibility of oligonucleotide microarray transcriptome analyses. An interlaboratory comparison using chemostat cultures of Saccharomyces cerevisiae.
• Relating transcription factors, modules of genes and cultivation conditions in Saccharomyces cerevisiae
• Nanoarrays:  A Method for Performing Enzymatic Assays
• Glutamate Biosynthesis in Lactococcus lactis subsp. lactis NCDO 2118
• Exploiting combinatorial cultivation conditions to infer transcriptional regulation.
• Chemostat-Based Micro-Array Analysis in Baker's Yeast
• Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes
• Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis
• Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study
• When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation
• Flexibility of the metabolism of Corynebacterium glutamicum 2262, a glutamic acid-producing bacterium, in response to temperature upshocks
• Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design
• Quantitative physiology of Saccharomyces cerevisiae at near-zero specific growth rates (Applied and Environmental Microbiology (2009) 75, 17 (5607-5614))
• Glutamate biosynthesis in Lactococcus lactis subsp. lactis NCDO 2118
• Chemostat cultivation and genome expression analysis of yeast
• Acclimation of Saccharomyces cerevisiae to Low Temperature: A Chemostat-based Transcriptome Analysis
• Role of Transcriptional Regulation in Controlling Fluxes in Central Carbon Metabolism of Saccharomyces cerevisiae: A CHEMOSTAT CULTURE STUDY
• Flexibility of the metabolism of Corynebacterium glutamicum 2262, a glutamic acid-producing bacterium, in response to temperature upshocks
• New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess
• An improved temperature-triggered process for glutamate production with Corynebacterium glutamicum
• Prolonged Maltose-Limited Cultivation of Saccharomyces cerevisiae Selects for Cells with Improved Maltose Affinity and Hypersensitivity
• Glutamate Excretion as a Major Kinetic Bottleneck for the Thermally Triggered Production of Glutamic Acid by Corynebacterium glutamicum
• Top-Down, Knowledge-Based Genetic Reduction of Yeast Central Carbon Metabolism
• Proteome dynamics during transition from exponential to stationary phase under aerobic and anaerobic conditions in yeast
• Long-read direct RNA sequencing of the mitochondrial transcriptome ofSaccharomyces cerevisiaereveals condition-dependent intron turnover
• Proteome Dynamics During Transition From Exponential to Stationary Phase Under Aerobic and Anaerobic Conditions in Yeast
• Long‐read direct RNA sequencing of the mitochondrial transcriptome of Saccharomyces cerevisiae reveals condition‐dependent intron abundance
• Physiological responses of Saccharomyces cerevisiae to industrially relevant conditions: Slow growth, low pH, and high CO2 levels
• Draft genome sequence of the Saccharomyces cerevisiae Spy Cas9 expressing strain IMX2600, a laboratory and platform strain from the CEN.PK lineage for cell-factory research
• A supernumerary designer chromosome for modularin vivopathway assembly inSaccharomyces cerevisiae