Matthew P. Adams

Publications

• Informing management decisions for ecological networks, using dynamic models calibrated to noisy time‐series data
• TALKS: A systematic framework for resolving model-data discrepancies
• Component-wise iterative ensemble Kalman inversion for static Bayesian models with unknown measurement error covariance
• Losing a winner: thermal stress and local pressures outweigh the positive effects of ocean acidification for tropical seagrasses
• Are laboratory growth rate experiments relevant to explaining bloom-forming cyanobacteria distributions at global scale?
• Optimum temperatures for net primary productivity of three tropical seagrass species
• Model fit versus biological relevance: Evaluating photosynthesis-temperature models for three tropical seagrass species
• Thresholds for morphological response to light reduction for four tropical seagrass species
• Editorial: Canopies in Aquatic Ecosystems: Integrating Form, Function, and Biophysical Processes
• Night and day: Shrinking and swelling of stems of diverse mangrove species growing along environmental gradients
• Seagrass Resistance to Light Deprivation: Implications for Resilience
• Seagrasses in the South-East Australian Region—Distribution, Metabolism, and Morphology in Response to Hydrodynamic, Substrate, and Water Quality Stressors
• Seasonal dynamics of trace elements in sediment and seagrass tissues in the largest Zostera japonica habitat, the Yellow River Estuary, northern China
• Water residence time controls the feedback between seagrass, sediment and light: Implications for restoration
• Fragment dispersal and plant-induced dieback explain irregular ring-shaped pattern formation in a clonal submerged macrophyte
• Invasive macrophytes control the spatial and temporal patterns of temperature and dissolved oxygen in a shallow lake: A proposed feedback mechanism of macrophyte loss
• Seagrass ecosystem trajectory depends on the relative timescales of resistance, recovery and disturbance
• Variation within and between cyanobacterial species and strains affects competition: Implications for phytoplankton modelling
• Constitutive toxin production under various nitrogen and phosphorus regimes of three ecotypes of Cylindrospermopsis raciborskii ((Wołoszyńska) Seenayya et Subba Raju)
• A biophysical representation of seagrass growth for application in a complex shallow-water biogeochemical model
• Feedback between sediment and light for seagrass: Where is it important?
• MATHEMATICAL MODELS OF CALCIUM AND TIGHT JUNCTIONS IN NORMAL AND RECONSTRUCTED EPIDERMIS
• Enhancing raman signal sufficiently for practical sensing applications
• Prioritizing localized management actions for seagrass conservation and restoration using a species distribution model
• Integral, mean and covariance of the simplex-truncated multivariate normal distribution
• Modeling total predation to avoid perverse outcomes from cat control in a data‐poor island ecosystem
• Integrative carbonate budget model of the Great Barrier Reef
• Strategic model reduction by analysing model sloppiness: A case study in coral calcification
• “The marriage of data and models”: a light-hearted animation with a serious purpose
• Seagrass roots strongly reduce cliff erosion rates in sandy sediments
• Towards Ecologically Relevant Targets: Impact of flow and sediment discharge on seagrass communities in the Great Barrier Reef
• Operationalizing marketable blue carbon
• Species‐specific acclimatization capacity of key traits explains global vertical distribution of seagrass species
• Analysis of sloppiness in model simulations: Unveiling parameter uncertainty when mathematical models are fitted to data
• An integrated study of the Gladstone marine system
• Assessment of light history indicators for predicting seagrass biomass
• An evidence-based approach for setting desired state in a complex Great Barrier Reef seagrass ecosystem
• CSIRO Environmental Modelling Suite (EMS): Scientific description of the optical and biogeochemical models (vB3p0)
• Connecting Sediment Load Targets to Ecological Outcomes for Seagrass
• Final report on thresholds and indicators of declining water quality as tools for tropical seagrass management
• A prioritization metric and modelling framework for fragmented saltmarsh patches restoration
• Resilience-based management tools for the Great Barrier Reef
• Plant morphology and seed germination responses of seagrass (Zostera japonica) to water depth and light availability in Ailian Bay, northern China
• CSIRO Environmental Modelling Suite
• Predicting seagrass decline due to cumulative stressors
• Connecting targets for catchment sediment loads to ecological outcomes for seagrass using multiple lines of evidence
• Light history-dependent respiration explains the hysteresis in the daily ecosystem metabolism of seagrass
• Towards a Quantitative Theory of Epidermal Calcium Profile Formation in Unwounded Skin
• An acoustically enhanced gold film Raman sensor on a lithium niobate substrate
• Considering unknown uncertainty in imperfect models: nitrogen mineralization as a case study
• Active regulation of the epidermal calcium profile
• A continuum model of the growth of engineered epidermal skin substitutes
• Solution methods for advection-diffusion-reaction equations on growing domains and subdomains, with application to modelling skin substitutes
• Quantifying the role of photoacclimation and self-facilitation for seagrass resilience to light deprivation
• Assimilating modelled dissolved inorganic nitrogen loads to monitored data using component-wise iterative ensemble Kalman inversion
• Interpreting gas sorption isotherms in glassy polymers using a Bayesian framework: A view on parameter uncertainty propagation into mixture sorption predictions
• Unlocking ensemble ecosystem modelling for large and complex networks
• Beyond expected values: Making environmental decisions using value of information analysis when measurement outcome matters
• Trade‐Off Between Light Deprivation and Desiccation in Intertidal Seagrasses Due To Periodic Tidal Inundation and Exposure: Insights From a Data‐Calibrated Model
• Cost-benefit analysis of ecosystem modeling to support fisheries management
• A scalable big data approach for remotely tracking rangeland conditions
• EEMtoolbox: A user-friendly R package for flexible ensemble ecosystem modeling