Markus Schmid

Publications

• E-MTAB-5130 - Transcriptomes and differential gene expression at the Arabidopsis shoot meristem during flowering
• E-MTAB-4680 - Chromatin states in the Arabidopsis seedlings
• E-MTAB-4684 - Chromatin states in the Arabidopsis shoot apical meristem
• Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo
• Impaired KIN10 function restores developmental defects in the Arabidopsis trehalose 6‐phosphate synthase1 (tps1) mutant
• A circRNA from SEPALLATA3 regulates splicing of its cognate mRNA through R-loop formation
• PICLN modulates alternative splicing and light/temperature responses in plants
• Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes.
• Role of BASIC PENTACYSTEINE transcription factors in a subset of cytokinin signaling responses
• Epigenetic regulation of temperature responses: past successes and future challenges
• Insights into the role of alternative splicing in plant temperature response
• Temporal dynamics of gene expression and histone marks at the Arabidopsis shoot meristem during flowering
• Temperature-dependent regulation ofArabidopsis thalianagrowth and development byLSM7
• PICLN modulates alternative splicing and ensures adaptation to light and temperature changes in plants
• PORCUPINE regulates development in response to temperature through alternative splicing
• Gibberellic acid signaling is required for ambient temperature-mediated induction of flowering in Arabidopsis thaliana
• A quantitative and dynamic model of the Arabidopsis flowering time gene regulatory network
• Role of alternative pre-mRNA splicing in temperature signaling
• Modulation of Ambient Temperature-Dependent Flowering in Arabidopsis thaliana by Natural Variation of FLOWERING LOCUS M
• Profiling of embryonic nuclear vs. cellular RNA in Arabidopsis thaliana
• Control of flowering by ambient temperature
• Regulation of Flowering by Endogenous Signals
• Reciprocal responses in the interaction between Arabidopsis and the cell-content-feeding chelicerate herbivore spider mite
• A SAM oligomerization domain shapes the genomic binding landscape of the LEAFY transcription factor
• Integration of light and metabolic signals for stem cell activation at the shoot apical meristem
• A gibberellin methyltransferase modulates the timing of floral transition at the Arabidopsis shoot meristem
• Conifers exhibit a characteristic inactivation of auxin to maintain tissue homeostasis
• Methylosome and SMN complexes are dispensable for snRNP assembly in Arabidopsis
• Perturbations in plant energy homeostasis prime lateral root initiation via SnRK1-bZIP63-ARF19 signaling
• FLOWERING LOCUS T paralogs control the annual growth cycle in Populus trees
• Contribution of major FLM isoforms to temperature-dependent flowering in Arabidopsis thaliana
• WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity
• Dynamics of H3K4me3 Chromatin Marks Take the Lead over H3K27me3 for Gene Regulation during Flower Morphogenesis in Arabidopsis thaliana
• Effects of FLOWERING LOCUS T on FD during the transition to flowering at the shoot apical meristem of Arabidopsis thaliana
• Phloem Companion Cell-Specific Transcriptomic and Epigenomic Analyses Identify MRF1, a Regulator of Flowering
• FT Modulates Genome-Wide DNA-Binding of the bZIP Transcription Factor FD
• A bacterial assay for rapid screening of IAA catabolic enzymes
• CRISPR-based tools for targeted transcriptional and epigenetic regulation in plants
• Conifers exhibit a characteristic inactivation of auxin to maintain tissue homeostasis
• A bacterial assay for rapid screening of IAA catabolic enzymes
• TERMINAL FLOWER1 Functions as a Mobile Transcriptional Cofactor in the Shoot Apical Meristem
• The trehalose 6‐phosphate pathway impacts vegetative phase change in Arabidopsis thaliana
• miRNA Mediated Regulation and Interaction between Plants and Pathogens
• Dynamics of H3K4me3 Chromatin Marks Prevails over H3K27me3 for Gene Regulation during Flower Morphogenesis in Arabidopsis thaliana
• Mutations inHUA2restore flowering in the Arabidopsistrehalose 6-phosphate synthase1(tps1) mutant
• Time and temperature-resolved transcriptomic analysis ofArabidopsissplicing-related mutants
• Editorial overview: Growth and development: Change is in the air: how plants modulate development in response to the environment
• TheArabidopsissplicing factor PORCUPINE/SmE1 orchestrates temperature-dependent root development via auxin homeostasis maintenance
• TheArabidopsis thalianacore splicing factor PORCUPINE/SmE1 requires intron-mediated expression
• The Arabidopsis splicing factor PORCUPINE/SmE1 orchestrates temperature‐dependent root development via auxin homeostasis maintenance
• The end of innocence: flowering networks explode in complexity
• Gibberellin regulates the Arabidopsis floral transition through miR156-targeted SQUAMOSA promoter binding-like transcription factors
• MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor
• A gene expression map of Arabidopsis thaliana development
• Regulation of temperature-responsive flowering by MADS-box transcription factor repressors
• Temperature-dependent regulation of flowering by antagonistic FLM variants
• Regulation of flowering by trehalose-6-phosphate signaling in Arabidopsis thaliana
• Characterisation of SOC1's central role in flowering by the identification of its up- and downstream regulators
• Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses
• Spatial control of flowering by DELLA proteins in Arabidopsis thaliana
• Synteny-based mapping-by-sequencing enabled by targeted enrichment
• Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2
• The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element
• Prediction of regulatory interactions from genome sequences using a biophysical model for the Arabidopsis LEAFY transcription factor
• Regulation of flowering time: all roads lead to Rome
• The control of developmental phase transitions in plants
• Trehalose-6-phosphate: connecting plant metabolism and development
• Control of lateral organ development and flowering time by the Arabidopsis thaliana MADS-box Gene AGAMOUS-LIKE6
• The Arabidopsis COP9 signalosome is essential for G2 phase progression and genomic stability
• Distinct expression patterns of natural antisense transcripts in Arabidopsis
• Export of FT protein from phloem companion cells is sufficient for floral induction in Arabidopsis
• The FANTASTIC FOUR proteins influence shoot meristem size in Arabidopsis thaliana
• Just say no: floral repressors help Arabidopsis bide the time
• Repression of flowering by the miR172 target SMZ
• Auxin responses in mutants of the Arabidopsis CONSTITUTIVE PHOTOMORPHOGENIC9 signalosome
• KDEL-tailed cysteine endopeptidases involved in programmed cell death, intercalation of new cells, and dismantling of extensin scaffolds
• Diversity of flowering responses in wild Arabidopsis thaliana strains
• Integration of spatial and temporal information during floral induction in Arabidopsis
• Specific effects of microRNAs on the plant transcriptome
• AthPEX10, a nuclear gene essential for peroxisome and storage organelle formation during Arabidopsis embryogenesis
• Dissection of floral induction pathways using global expression analysis
• Genome-wide insertional mutagenesis of Arabidopsis thaliana
• Ricinosomes: an organelle for developmentally regulated programmed cell death in senescing plant tissues
• The ricinosomes of senescing plant tissue bud from the endoplasmic reticulum
• Programmed cell death in castor bean endosperm is associated with the accumulation and release of a cysteine endopeptidase from ricinosomes
• The plant PTS1 receptor: similarities and differences to its human and yeast counterparts
• A cysteine endopeptidase with a C-terminal KDEL motif isolated from castor bean endosperm is a marker enzyme for the ricinosome, a putative lytic compartment
• Programmed cell death in castor bean endosperm is associated with the accumulation and release of a cysteine endopeptidase from ricinosomes
• Ricinosomes: an organelle for developmentally regulated programmed cell death in senescing plant tissues
• A cysteine endopeptidase with a C-terminal KDEL motif isolated from castor bean endosperm is a marker enzyme for the ricinosome, a putative lytic compartment
• The plant PTS1 receptor: similarities and differences to its human and yeast counterparts
• Isolation of Nuclei Tagged in Specific Cell Types (INTACT) in Arabidopsis
• Arabidopsis thalianaLSM7 is essential for auxin-mediated regulation ofSAURgenes and thermomorphogenesis
• Transcriptional Dynamics and Chromatin Accessibility in the Regulation of Shade-Responsive Genes in Arabidopsis
• The Arabidopsis thaliana core splicing factor PORCUPINE/SmE1 requires intron-mediated expression