LB
Publications
- Petascale turbulence simulation using a highly parallel fast multipole method on GPUs DOI: 10.1016/j.cpc.2012.09.011
- Hierarchical N-body Simulations with Autotuning for Heterogeneous Systems DOI: 10.1109/MCSE.2012.1
- A tuned and scalable fast multipole method as a preeminent algorithm for exascale systems DOI: 10.1177/1094342011429952
- FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method DOI: 10.1016/j.compfluid.2012.08.002
- Hierarchical N-body simulations with autotuning for heterogeneous systems DOI: 10.1109/MCSE.2012.1
- Scalable fast multipole methods for vortex element methods DOI: 10.1109/SC.Companion.2012.221
- Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns DOI: 10.1016/j.cpc.2011.02.013
- Comparing the treecode with FMM on GPUs for vortex particle simulations of a leapfrogging vortex ring DOI: 10.1016/j.compfluid.2010.11.029
- How to obtain efficient GPU kernels: An illustration using FMM & FGT algorithms DOI: 10.1016/j.cpc.2011.05.002
- PetFMM-A dynamically load-balancing parallel fast multipole library DOI: 10.1002/nme.2972
- Treecode and Fast Multipole Method for N-Body Simulation with CUDA DOI: 10.1016/B978-0-12-384988-5.00009-7
- Fast multipole method for particle interactions: An open source parallel library component DOI: 10.1007/978-3-642-14438-7_30
- Global field interpolation for particle methods DOI: 10.1016/j.jcp.2009.10.031
- PetRBF - A parallel O(N) algorithm for radial basis function interpolation with Gaussians DOI: 10.1016/j.cma.2010.02.008
- Characterization of the accuracy of the fast multipole method in particle simulations DOI: 10.1002/nme.2611
- Fast radial basis function interpolation with Gaussians by localization and iteration DOI: 10.1016/j.jcp.2009.03.007
- Panel-free boundary conditions for viscous vortex methods
- Lagrangian Flow Geometry of Tripolar Vortex DOI: 10.1007/978-1-4020-6744-0_21
- Lagrangian flow geometry of tripolar vortex
- Emergence and evolution of tripole vortices from net-circulation initial conditions DOI: 10.1063/1.2409734
- Discussion: "Three-dimensional vortex method for gas-particle two-phase compound round jet" (Uchiyama, T., and Fukase, A., 2005, ASME J. fluids Eng., 127, pp. 32-40) DOI: 10.1115/1.2175173
- Nonshielded multipolar vortices at high Reynolds number DOI: 10.1103/PhysRevE.73.065303
- Advances in viscous vortex methods - Meshless spatial adaption based on radial basis function interpolation DOI: 10.1002/fld.811
- Vortex method with meshless spatial adaption for accurate simulation of viscous, unsteady vortical flows DOI: 10.1002/fld.842
- Probing protein orientation near charged nanosurfaces for simulation-assisted biosensor design
- Guest editorial: Flipped classrooms in stem
- Lift and wakes of flying snakes
- The Python/Jupyter ecosystem: today's problem-solving environment for computational science
- PyGBe-LSPR: Python and GPU Boundary-integral solver for electrostatics
- PetIBM: toolbox and applications of the immersed-boundary method on distributed-memory architectures
- Treecode and Fast Multipole Method for N-Body Simulation with CUDA
- Hierarchical N-body Simulations with Autotuning for Heterogeneous Systems
- Guidelines and Workflow for Articles Submitted to CiSE Departments
- Inexact GMRES iterations and relaxation strategies with fast-multipole boundary element method
- A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers
- Petascale turbulence simulation using a highly parallel fast multipole method on GPUs
- The principles of tomorrow's university [version 1; referees: awaiting peer review]
- Scientific Computing With Python on High-Performance Heterogeneous Systems
- The Path to Frictionless Reproducibility Is Still Under Construction
- Overview: US Policy on Open Access and Open Data
- Poisson–Boltzmann model for protein–surface electrostatic interactions and grid-convergence study using the PyGBe code
- A tuned and scalable fast multipole method as a preeminent algorithm for exascale systems
- FMM-based vortex method for simulation of isotropic turbulence on GPUs, compared with a spectral method
- Scalable fast multipole methods for vortex element methods
- Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns
- Comparing the treecode with FMM on GPUs for vortex particle simulations of a leapfrogging vortex ring
- How to obtain efficient GPU kernels: An illustration using FMM & FGT algorithms
- PetFMM-A dynamically load-balancing parallel fast multipole library
- Fast multipole method for particle interactions: An open source parallel library component
- Global field interpolation for particle methods
- PetRBF - A parallel O(N) algorithm for radial basis function interpolation with Gaussians
- Characterization of the accuracy of the fast multipole method in particle simulations
- Policy recommendations to ensure that research software is openly accessible and reusable
- PyExaFMM: An Exercise in Designing High-Performance Software With Python and Numba
- Reproducible validation and replication studies in nanoscale physics
- [Re] Three-dimensional wake topology and propulsive performance of low-aspect-ratio pitching-rolling plates
- Sustainable computational science: the ReScience initiative
- Finding the Force—Consistent Particle Seeding for Satellite Aerodynamics
- Scalable fast multipole accelerated vortex methods
- The hard road to reproducibility
- PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics
- cuIBM: a GPU-based immersed boundary method code
- AmgXWrapper: An interface between PETSc and the NVIDIA AmgX library
- CFD Python: the 12 steps to Navier-Stokes equations
- Giving software its due through community-driven review and publication
- Aero Python: classical aerodynamics of potential flow using Python
- Computational nanoplasmonics in the quasistatic limit for biosensing applications
- Review for: Exemplifying Computational Thinking Scenarios in the Age of COVID-19: Examining the Pandemic’s Effects in a Project-Based MOOC
- Editorial: Computational Science and Engineering in 2020
- Trustworthy computational evidence through transparency and reproducibility
- Trustworthy Computational Evidence Through Transparency and Reproducibility
- ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces
- geoclaw-landspill: an oil land-spill and overland flow simulator for pipeline rupture events
- The Python/Jupyter Ecosystem: Today’s Problem-Solving Environment for Computational Science
- Spectral-like accuracy in space of a meshless vortex method
- Fast multipole method upward and downward sweeps
- Flying snake wake visualizations with cuIBM
- Weak scaling of parallel FMM vs. FFT up to 4096 processes
- Lagrangian Flow Geometry of Tripolar Vortex
- Body cross-section of the flying snake Chrysopelea paradisi
- Nonshielded multipolar vortices at high Reynolds number
- Hierarchical subdivision of space in FMM (fast multipole method)
- Digital inking and lecture screencasts
- Lift and drag coefficient versus angle of attack for a flying snake cross-section
- PyGBe: Python on the surface, GPUs at the heart. BEM solver for Electrostatics of Biomolecules
- Illustration of the flow of an FMM calculation (fast multipole method)
- Open, Blended, Flipped, Social—courses in Mechanical Engineering
- Reproducibility PI Manifesto
- Time-averaged surface pressure on a flying-snake cross-section
- (Brochure) ExaFMM: An open source library for Fast Multipole Methods
- Application for the NAE Frontiers of Engineering Education Symposium 2012
- ExaFMM: An open source library for Fast Multipole Methods aimed towards Exascale systems
- GPU@BU—GPU computing at Boston University
- Validation of the PyGBe code for Poisson-Boltzmann equation with boundary element methods
- Communicating in Science and not being Afraid of Tenacious Self-promotion
- Digital pedagogy in three parts: screencasting, course blog, remote guests
- Everybody's Flippin'—An update on the Flipped Classroom
- Validation of the cuIBM code for Navier-Stokes equations with immersed boundary methods
- Fast radial basis function interpolation with Gaussians by localization and iteration
- Emergence and evolution of tripole vortices from net-circulation initial conditions
- Discussion: "Three-dimensional vortex method for gas-particle two-phase compound round jet" (Uchiyama, T., and Fukase, A., 2005, ASME J. fluids Eng., 127, pp. 32-40)
- Advances in viscous vortex methods - Meshless spatial adaption based on radial basis function interpolation
- Vortex method with meshless spatial adaption for accurate simulation of viscous, unsteady vortical flows
- Computing high-Reynolds number vortical flows: A highly accurate method with a fully meshless formulation
- Numerical investigations on the accuracy of the vortex method with and without remeshing
- Vortex method with fully mesh-less implementation for high-reynolds number flow computations