figshare
Browse

Jonathan Karr

0000-0002-2605-5080

Fellow (Systems biology)

Icahn School of Medicine at Mount Sinai

Systems biologist focused on developing the comprehensive computational models that will enable personalized and predictive medicine and rational bioengineering.Focused on highly innovative research and engineering. Experienced in molecular cell biology, computational modeling, software engineering, and scientific visualization. Also interested in teaching and mentorship. Systems biologist focused on developing comprehensive computational models to enable personalized and predictive medicine and rational bioengineering. Focused on innovative research and engineering. Experienced in molecular cell biology, computational modeling, software engineering, and scientific visualization. Committed to teaching and mentorship.

Publications

  • Causal inference in biology networks with integrated belief propagation
  • WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions. DOI: 10.1093/database/bau095
  • WholeCellViz: Data visualization for whole-cell models DOI: 10.1186/1471-2105-14-253
  • WholeCellKB: model organism databases for comprehensive whole-cell models ISSN: 0305-1048
  • Towards a whole-cell modeling approach for synthetic biology DOI: 10.1063/1.4811182
  • Accelerated discovery via a whole-cell model DOI: 10.1038/nmeth.2724
  • A whole-cell computational model predicts phenotype from genotype DOI: 10.1016/j.cell.2012.05.044
  • Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli DOI: 10.1093/bioinformatics/btn352

Usage metrics

Co-workers & collaborators

Jonathan Karr's public data