Jeroen Steenbeek

Software engineer at Ecopath International Initiative Research Association (Earth and Environmental Sciences)

Barcelona, Spain

Jeroen Steenbeek is a classically trained software engineer with over 25 years of experience in industrial and academic software developments. He is a core programmer of the Ecopath with Ecosim (EwE) food web modelling approach since 2005 and still loves his job. His main research interest is solving ecosystem-modeling challenges by simplifying the interactions between science and technology using state-of-the-art computing paradigms, programming languages, GIS, and serious gaming. He participates in ecosystem modeling research projects around the globe, and has authored over 60 research papers in scientific journals. Jeroen holds an MSc in GIS, and recently started a PhD in marine ecology to address the global need to better fit and validate spatial-temporal marine ecosystem models for policy uptake.

Publications

  • A Stepwise Fitting Procedure for automated fitting of Ecopath with Ecosim models
  • Standardized ecological indicators to assess aquatic food webs: The ECOIND software plug-in for Ecopath with Ecosim models
  • Mapping diversity of species in global aquaculture
  • Refinement of an Ecopath with Ecosim (EwE) model of the Clyde Sea for use within the Clyde Marine Region digital Maritime Spatial Planning (MSP) Challenge Game
  • Current status, advancements and development needs of geospatial decision support tools for marine spatial planning in European seas
  • EwE​ ​model​ ​guidelines​ ​for​ ​MSP​ ​game play
  • Management Strategy Evaluation toolkit for Ecopath with Ecosim (model output and technical report)
  • Discard ban: A simulation-based approach combining hierarchical Bayesian and food web spatial models
  • Insights on integrating habitat preferences in process-oriented ecological models – a case study of the southern North Sea
  • Current and potential contributions of the Gulf of Lion Fisheries Restricted Area to fisheries sustainability in the NW Mediterranean Sea
  • Using ecosystem modeling to evaluate trade-offs in coastal management: Effects of large-scale river diversions on fish and fisheries
  • A risk-based approach to cumulative effect assessments for marine management
  • Historical changes of the Mediterranean Sea ecosystem: Modelling the role and impact of primary productivity and fisheries changes over time
  • Modelling marine trophic transfer of radiocarbon (14C) from a nuclear facility
  • Hindcasting the dynamics of an EasternMediterranean marine ecosystem under the impacts of multiple stressors
  • Using ecosystem modeling to determine hypoxia effects on fish and fisheries
  • EcotracerManual_5.pdf
  • Diet calculator guide.pdf
  • EwE​ ​model​ ​guidelines​ ​for​ ​MSP​ ​game play
  • ISIMIP2a Simulation Data from Fisheries & Marine Ecosystems (Fish-MIP; global) Sector
  • Ecosampler: A new approach to assessing parameter uncertainty in Ecopath with Ecosim
  • SOS small pelagics: A safe operating space for small pelagic fish in the western Mediterranean Sea
  • ISIMIP2a Simulation Data from Fisheries & Marine Ecosystems (Fish-MIP; regional) Sector
  • Future scenarios of marine resources and ecosystem conditions in the Eastern Mediterranean under the impacts of fishing, alien species and sea warming
  • Reducing eutrophication increases spatial extent of communities supporting commercial fisheries: A model case study
  • A protocol for the intercomparison of marine fishery and ecosystem models: Fish-MIP v1.0
  • Following the Fish: The Role of Subsistence in a Fish-based Value Chain
  • Erratum: Reducing eutrophication increases spatial extent of communities supporting commercial fisheries: A model case study (ICES Journal of Marine Science (2018) DOI: 10.1093/icesjms/fsy003)
  • Integrating Ecopath with Ecosim into the MSP software - conceptual design
  • Integrating Ecopath with Ecosim into the MSP software - conceptual design
  • State-of-the-art global models underestimate impacts from climate extremes
  • MSP Challenge 2050 food web review
  • MSP Challenge 2050 food web review
  • EwE tools for MSP user guide.pdf
  • Biomass emitter guide.pdf
  • Best practice in Ecopath with Ecosim food-web models for ecosystem-based management
  • New, flexible and open-source fisheries self-reporting app: The Shiny4SelfReport
  • An Ecopath with Ecosim model for the Pacific coast of eastern Japan: Describing the marine environment and its fisheries prior to the Great East Japan earthquake
  • A Digital Game-Based Simulation Platform for Integrated Marine Spatial Planning: Design Challenges and Technical Innovations
  • Combining ecosystem modeling with serious gaming in support of transboundary maritime spatial planning
  • MSP Challenge 2050 food web review
  • The effects of marine protected areas on ecosystem recovery and fisheries using a comparative modelling approach
  • Human Activities Help Alien Species to Invade the Mediterranean Sea
  • Using Gaming Technology to Explore and Visualize Management Impacts on Marine Ecosystems
  • Effects of Nutrient Management Scenarios on Marine Food Webs: A Pan-European Assessment in Support of the Marine Strategy Framework Directive
  • Disentangling diverse responses to climate change among global marine ecosystem models
  • A novel approach to explicitly model the spatiotemporal impacts of structural complexity created by alien ecosystem engineers in a marine benthic environment
  • Next-generation ensemble projections reveal higher climate risks for marine ecosystems
  • Making spatial-temporal marine ecosystem modelling better – A perspective
  • Modelling dynamic ecosystems: venturing beyond boundaries with the Ecopath approach
  • Modelling the cumulative spatial-temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem
  • Exploring effects of hypoxia on fish and fisheries in the northern Gulf of Mexico using a dynamic spatially explicit ecosystem model
  • Flash: The Future: Pocket PC / DVD / ITV / Video / Game Consoles / Wireless
  • Ensemble projections of global ocean animal biomass with climate change
  • The biodiversity of the Mediterranean Sea: estimates, patterns, and threats.
  • Employing ecosystem models and geographic information systems (GIS) to investigate the response of changing marsh edge on historical biomass of estuarine nekton in Barataria Bay, Louisiana, USA
  • The global ocean is an ecosystem: simulating marine life and fisheries
  • Invading the Mediterranean Sea: biodiversity patterns shaped by human activities
  • A century of fish biomass decline in the ocean
  • Modelling the Mediterranean marine ecosystem as a whole: addressing the challenge of complexity
  • Advancing marine conservation planning in the Mediterranean Sea
  • The Mediterranean Sea under siege: spatial overlap between marine biodiversity, cumulative threats and marine reserves
  • Database-driven models of the world's Large Marine Ecosystems
  • ‘Low-hanging fruit’ for conservation of marine vertebrate species at risk in the Mediterranean Sea
  • Ecopath with Ecosim as a model-building toolbox: Source code capabilities, extensions, and variations
  • Evaluation of the effects on rockfish and kelp artisanal fisheries of the proposed Mejillones Peninsula marine protected area (northern Chile, SE Pacific coast)
  • Bridging the gap between ecosystem modeling tools and geographic information systems: Driving a food web model with external spatial–temporal data
  • A combined ecosystem and value chain modeling approach for evaluating societal cost and benefit of fishing
  • Spatial optimization of protected area placement incorporating ecological, social and economical criteria
  • Valuing seafood: The Peruvian fisheries sector
  • Representing Variable Habitat Quality in a Spatial Food Web Model
  • Biodiversity data requirements for systematic conservation planning in the Mediterranean Sea
  • Making spatial-temporal marine ecosystem modelling better – a perspective
  • Small pelagic fish fitness relates to local environmental conditions and trophic variables
  • Modelling marine trophic transfer of radiocarbon (14C) from a nuclear facility
  • ISIMIP2a Simulation Data from Fisheries & Marine Ecosystems (Fish-MIP; regional) Sector
  • ISIMIP2a Simulation Data from Fisheries & Marine Ecosystems (Fish-MIP; global) Sector
  • Utility and challenges of marine ecosystem models for a better understanding and management of the ocean
  • Looking with remote eyes: novel technologies for a better management of the ocean

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Co-workers & collaborators

Jacob Bentley

Jacob Bentley

Jeroen Steenbeek's public data