Jacob Landis

Publications

• Towards a global perspective for Salvia L: Phylogeny, diversification, and floral evolution
• Phylogeography and population genetics reveal ring species patterns in a highly polymorphic California lily
• Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)
• The phenotypic and genetic underpinnings of flower size in polemoniaceae
• Optical sectioning and 3D reconstructions as an alternative to scanning electron microscopy for analysis of cell shape
• The Report of My Death was an Exaggeration: A Review for Researchers Using Microsatellites in the 21st Century
• A New Resource for the Development of SSR Markers: Millions of Loci from a Thousand Plant Transcriptomes
• Evolution of petaloid sepals independent of shifts in B-class MADS box gene expression
• High school students’ learning and perceptions of phylogenetics of flowering plants
• Characterization of 32 novel microsatellite loci for population and mating system studies using Campostoma anomalum (central stoneroller)
• Evolutionary analysis of the MIXTA gene family highlights potential targets for the study of cellular differentiation
• Development and application of transcriptome-derived microsatellites in actinidia eriantha (actinidiaceae)
• nQuack: An R package for predicting ploidal level from sequence data using site-based heterozygosity
• Pleistocene glaciation advances the younger temporal dimension of species diversification in a major biodiversity hotspot
• Early consequences of allopolyploidy alter floral evolution in Nicotiana (Solanaceae)
• Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae)
• Phylogenomic and comparative analyses of Rheum (Polygonaceae, Polygonoideae)
• Genomic insights into adaptation to heterogeneous environments for the ancient relictual Circaeaster agrestis (Circaeasteraceae, Ranunculales)
• Natural selection drives emergent genetic homogeneity in a century-scale experiment with barley
• Balancing read length and sequencing depth: Optimizing Nanopore long‐read sequencing for monocots with an emphasis on the Liliales
• Genomic underpinnings of convergent adaptation to high altitudes for alpine plants
• Hybridization and introgression are prevalent in Southern European Erysimum (Brassicaceae) species
• Elevational patterns of phylogenetic structure of angiosperms in a biodiversity hotspot in eastern Himalaya
• Western Tethys origin, tropical Asia and tropical America disjunction in Berchemia and reinstatement of Phyllogeiton (Rhamneae, Rhamnaceae)
• Chromosomal evolution, environmental heterogeneity, and migration drive spatial patterns of species richness in Calochortus (Liliaceae)
• Evolution of floral traits and impact of reproductive mode on diversification in the phlox family (Polemoniaceae)
• Plastome phylogenomics of the early-diverging eudicot family Berberidaceae
• Impact of whole-genome duplication events on diversification rates in angiosperms
• Geophytism in monocots leads to higher rates of diversification
• Population Genomic Analyses Suggest a Hybrid Origin, Cryptic Sexuality, and Decay of Genes Regulating Seed Development for the Putatively Strictly Asexual Kingdonia uniflora (Circaeasteraceae, Ranunculales)
• Revisiting floral fusion: the evolution and molecular basis of a developmental innovation
• Plastome Phylogenomic and Biogeographical Study on Thuja (Cupressaceae)
• Differential Gene Expression with an Emphasis on Floral Organ Size Differences in Natural and Synthetic Polyploids of Nicotiana tabacum (Solanaceae)
• Insights into the drivers of radiating diversification in biodiversity hotspots usingSaussurea(Asteraceae) as a case
• Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation and biogeography of the Sino-Japanese disjunctive Diabelia (Caprifoliaceae)
• Transcriptomes of Saussurea (Asteraceae) Provide Insights into High-Altitude Adaptation
• Homeologue differential expression in the flavonoid biosynthetic pathway underlies flower colour variation in natural and synthetic polyploids of Nicotiana tabacum (Solanaceae)
• Genome assembly of the snow lotus species Saussurea involucrata provides insights into acacetin and rutin biosynthesis and tolerance to an alpine environment
• New insights into infrageneric relationships of Lonicera (Caprifoliaceae) as revealed by nuclear ribosomal DNA cistron data and plastid phylogenomics
• Target sequence capture data shed light on the deeper evolutionary relationships of subgenus Chamaecerasus in Lonicera (Caprifoliaceae)
• Genomic convergence underlying high‐altitude adaptation in alpine plants
• Natural selection drives emergent genetic homogeneity in a century-scale experiment with barley
• nQuack: An R package for predicting ploidal level from sequence data using site‐based heterozygosity
• Pleistocene glaciation advances the cryptic speciation of Stellera chamaejasme L. in a major biodiversity hotspot
• Migration through a major Andean ecogeographic disruption as a driver of genotypic and phenotypic diversity in a wild tomato species
• Measuring hidden phenotype: Quantifying the shape of barley seeds using the Euler Characteristic Transform
• Phylogenomic analyses of the East Asian endemicAbelia(Caprifoliaceae) shed insights into the temporal and spatial diversification history with widespread hybridizations
• Target enrichment phylogenomics and biogeographic analyses unravel rapid radiation and reticulate evolution between Hainan-South China mainland -Vietnam in SectionNintooa(Lonicera, Caprifoliaceae)
• Ectopic cambia in Japanese wisteria (Wisteria floribunda) vines are associated with the expression of conservedKNOXgenes
• The topography of gene tree topology space in a plant genus with a legacy of recent polyploidy and introgression
• Characterization of 35 novel microsatellite loci for ecological and evolutionary studies of the bluntnose minnow (Pimephales notatus)
• Genetic structure of creek chub, a headwater minnow, in an impounded river system
• Permanent genetic resources added to molecular ecology resources database 1 May 2009-31 July 2009
• Twenty-three microsatellite DNA loci for population genetic studies and parentage assignment in orangethroat darter, Etheostoma spectabile
• Population genomics of the Isoetes appalachiana (Isoetaceae) complex supports a ‘diploids-first’ approach to conservation
• The genomic and epigenetic footprint of local adaptation to variable climates in kiwifruit
• Genomic Relationships of Glycine remota, a Recently Discovered Perennial Relative of Soybean, within Glycine
• Homeologue differential expression in the flavonoid biosynthetic pathway underlies flower colour variation in natural and synthetic polyploids of Nicotiana tabacum (Solanaceae)
• Genome assembly of the snow lotus species Saussurea involucrata provides insights into acacetin and rutin biosynthesis and tolerance to an alpine environment
• New insights into infrageneric relationships of Lonicera (Caprifoliaceae) as revealed by nuclear ribosomal DNA cistron data and plastid phylogenomics
• Shifts in reproductive strategies in the evolutionary trajectory of plant lineages
• Data‐driven guidelines for phylogenomic analyses using SNP data
• Biogeographic analysis based on phylogenomic data supports multiple ancient dispersals that facilitated the eastern Asia–North America–Mexico disjunction in the subfamily Linnaeoideae (Caprifoliaceae)
• The evolutionary history and distribution of cactus germplasm resources, as well as potential domestication under a changing climate
• An updated classification for the hyper‐diverse genusCorydalis(Papaveraceae: Fumarioideae) based on phylogenomic and morphological evidence
• Phylogeny and evolution of Asparagaceae subfamily Nolinoideae: new insights from plastid phylogenomics
• Hybridization and introgression are prevalent in Southern European Erysimum (Brassicaceae) species
• Genome Skimming Contributes to Clarifying Species Limits in Paris Section Axiparis (Melanthiaceae)
• Insights into the differentiation and adaptation within Circaeasteraceae from Circaeaster agrestis genome sequencing and resequencing
• Towards a global perspective for Salvia L.: Phylogeny, diversification and floral evolution
• Molecular phylogeography and species distribution modelling evidence of ‘oceanic’ adaptation for Actinidia eriantha with a refugium along the oceanic–continental gradient in a biodiversity hotspot
• Staying in situ or shifting range under ongoing climate change: A case of an endemic herb in theHimalaya‐HengduanMountains across elevational gradients
• Plastome phylogenomics and biogeography of the subfam. Polygonoideae (Polygonaceae)
• Plastome structure, phylogenomic analyses and molecular dating of Arecaceae
• The genetic mechanisms underlying the convergent evolution of pollination syndromes in the Neotropical radiation of Costus L.
• Nuclear and plastid phylogenomic analyses provide insights into the reticulate evolution, species delimitation, and biogeography of the Sino‐Japanese disjunctive Diabelia (Caprifoliaceae)
• Measuring hidden phenotype: quantifying the shape of barley seeds using the Euler characteristic transform
• Comparative analysis of chloroplast genome structure and molecular dating in Myrtales
• Plastome phylogenomics ofCephalotaxus(Cephalotaxaceae) and allied genera
• Accelerated diversification correlated with functional traits shapes extant diversity of the early divergent angiosperm family Annonaceae
• Genome Sequencing of the Endangered Kingdonia uniflora (Circaeasteraceae, Ranunculales) Reveals Potential Mechanisms of Evolutionary Specialization
• Plastome Evolution in Dolomiaea (Asteraceae, Cardueae) Using Phylogenomic and Comparative Analyses
• Phylogenomics of the genus Glycine sheds light on polyploid evolution and life-strategy transition
• Macroevolutionary pattern ofSaussurea(Asteraceae) provides insights into the drivers of radiating diversification
• Phylogenomic analyses of the East Asian endemic Abelia (Caprifoliaceae) shed insights into the temporal and spatial diversification history with widespread hybridization
• Extinction risk in vascular plants and vertebrates is negatively correlated with family size
• Migration through a Major Andean Ecogeographic Disruption as a Driver of Genetic and Phenotypic Diversity in a Wild Tomato Species
• Effects of drainage reorganization on phytogeographic pattern in Sino-Himalaya
• Deciphering the Taxonomic Delimitation of Ottelia acuminata (Hydrocharitaceae) Using Complete Plastomes as Super-Barcodes
• Plastome structure and phylogenetic relationships of Styracaceae (Ericales)
• Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
• Demographic history and local adaptation of Myripnois dioica (Asteraceae) provide insight on plant evolution in northern China flora
• Genomic Resources for Erysimum spp. (Brassicaceae): Transcriptome and Chloroplast Genomes
• Plastome phylogenomic analysis of Torreya (Taxaceae)
• Complete plastome sequence of Xylosma longifolia Clos. (Salicaceae)
• Genetic and morphological differentiation inWashingtonia(Arecaceae): solving a century-old palm mystery
• Phylogenetic patterns suggest frequent multiple origins of secondary metabolites across the seed-plant ‘tree of life’
• Unraveling the Spiraling Radiation: A Phylogenomic Analysis of Neotropical Costus L
• Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid genes
• The Complete Plastomes of Five Hemiparasitic Plants (Osyris wightiana, Pyrularia edulis, Santalum album, Viscum liquidambaricolum, and V. ovalifolium): Comparative and Evolutionary Analyses Within Santalales
• Circumscription of the Sibbaldia procumbens complex (Potentilleae: Rosaceae) in China based on evidence from simple sequence repeat markers and morphology
• Progress in molecular systematics of Caprifoliaceae
• Reference genome of Calochortus tolmiei Hook. & Arn. (Liliaceae), a cat’s ear mariposa lily
• Reference genome of Calochortus tolmiei Hook. & Arn. (Liliaceae), a cat's ear mariposa lily
• Differential gene expression and unbalanced homeolog expression bias in 4 million-year-old allopolyploids of Nicotiana section Repandae
• Differential Gene Expression and Unbalanced Homeolog Expression Bias in 4 Million-Year-Old Allopolyploids of Nicotiana Section Repandae