JH
Publications
- Phenotype risk scores identify patients with unrecognized Mendelian disease patterns
- Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease
- Automated quality control and cell identification of droplet-based single-cell data using dropkick.
- The Role of Electronic Health Records in Advancing Genomic Medicine.
- Improving the phenotype risk score as a scalable approach to identifying patients with Mendelian disease.
- Combinatorial processing of bacterial and host-derived innate immune stimuli at the single-cell level.
- Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records.
- Simphony: simulating large-scale, rhythmic data.
- MetaCyto: A Tool for Automated Meta-analysis of Mass and Flow Cytometry Data.
- Population level rhythms in human skin: implications for circadian medicine
- Guidelines for Genome-Scale Analysis of Biological Rhythms.
- Evidence for widespread dysregulation of circadian clock progression in human cancer.
- Meta-analysis of Cytometry Data Reveals Racial Differences in Immune Cells
- Differential Phasing between Circadian Clocks in the Brain and Peripheral Organs in Humans.
- Single-cell variation leads to population invariance in NF-κB signaling dynamics.
- LimoRhyde: a flexible approach for differential analysis of rhythmic transcriptome data
- Single-cell NF-κB dynamics reveal digital activation and analogue information processing
- Analysis of electronic health records reveals medication-related interference on point-of-care urine drug screening assays
- A computational approach to identify interfering medications on urine drug screening assays without data from confirmatory testing
- Eating breakfast and avoiding the evening snack sustains lipid oxidation
- Machine learning identifies a compact gene set for monitoring the circadian clock in human blood
- Simphony: simulating large-scale, rhythmic data
- Factors Associated with Medicine Timing Effects: A Meta-analysis
- Pulling the covers in electronic health records for an association study with self-reported sleep behaviors
- Tau-independent Phase Analysis: A Novel Method for Accurately Determining Phase Shifts
- Population-level rhythms in human skin with implications for circadian medicine
- The risks of using the chi-square periodogram to estimate the period of biological rhythms
- pmparser and PMDB: resources for large-scale, open studies of the biomedical literature
- Automated quality control and cell identification of droplet-based single-cell data using dropkick
- Live-cell measurements of kinase activity in single cells using translocation reporters
- Eating breakfast and avoiding late-evening snacking sustains lipid oxidation
- Optogenetic stimulation of VIPergic SCN neurons induces photoperiodic changes in the mammalian circadian clock
- Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record
- NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop
- A noisy paracrine signal determines the cellular NF-kappaB response to lipopolysaccharide.
- Optogenetic stimulation of VIPergic SCN neurons induces photoperiodic‐like changes in the mammalian circadian clock
- Releasing a preprint is associated with more attention and citations for the peer-reviewed article
- Robust meta-analysis of gene expression using the elastic net
- ZeitZeiger: supervised learning for high-dimensional data from an oscillatory system
- Monitoring the circadian clock in human blood using personalized machine learning
- Is the crowd better as an assistant or a replacement in ontology engineering? An exploration through the lens of the Gene Ontology
- High-Sensitivity Measurements of Multiple Kinase Activities in Live Single Cells
- Computational modeling of mammalian signaling networks
- Single-Cell and Population NF-κB Dynamic Responses Depend on Lipopolysaccharide Preparation
- Microfluidic platform for real-time signaling analysis of multiple single T cells in parallel
- Intra-microfluidic pinocytic loading of human T cells
- The microfluidic multitrap nanophysiometer for hematologic cancer cell characterization reveals temporal sensitivity of the calcein-AM efflux assay
- Widespread dysregulation of the circadian clock in human cancer
- Distinct components of photoperiodic light are differentially encoded by the mammalian circadian clock
- The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants
- Sex inclusion in transcriptome studies of daily rhythms
- The seeker R package: simplified fetching and processing of transcriptome data
- Sex Inclusion in Transcriptome Studies of Daily Rhythms
- LimoRhyde2: genomic analysis of biological rhythms based on effect sizes
- LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes