HT
Haibao Tang
Scientist and Software Engineer (Bioinformatics and computational biology not elsewhere classified)
Mountain View, CA
Publications
- An improved genome release (version Mt4.0) for the model legume Medicago truncatula DOI: 10.1186/1471-2164-15-312
- Early History of the Angiosperms DOI: 10.1016/B978-0-12-417163-3.00008-1
- Insights into the Common Ancestor of Eudicots DOI: 10.1016/B978-0-12-417163-3.00006-8
- Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) DOI: 10.1186/gb-2013-14-5-r41
- PGDD: A database of gene and genome duplication in plants DOI: 10.1093/nar/gks1104
- Seed shattering in a wild sorghum is conferred by a locus unrelated to domestication DOI: 10.1073/pnas.1305213110
- The Amborella genome and the evolution of flowering plants DOI: 10.1126/science.1241089
- Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy DOI: 10.1534/genetics.111.137349
- MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity DOI: 10.1093/nar/gkr1293
- Profiling of gene duplication patterns of sequenced teleost genomes: Evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications DOI: 10.1186/1471-2164-13-246
- Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres DOI: 10.1038/nature11798
- The Evolution of Genome Structure DOI: 10.4172/2324-8548.1000e105
- The tomato genome sequence provides insights into fleshy fruit evolution DOI: 10.1038/nature11119
- Unleashing the Genome of Brassica Rapa DOI: 10.3389/fpls.2012.00172
- Unleashing the genome of Brassica rapa DOI: 10.3389/fpls.2012.00172
- Comparative analysis of peanut NBS-LRR gene clusters suggests evolutionary innovation among duplicated domains and erosion of gene microsynteny DOI: 10.1111/j.1469-8137.2011.03800.x
- Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage DOI: 10.1016/j.ygeno.2011.02.007
- A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure DOI: 10.1186/gb-2011-12-5-r48
- Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage DOI: 10.1016/j.ygeno.2011.02.007
- Comparative analysis of peanut NBS-LRR gene clusters suggests evolutionary innovation among duplicated domains and erosion of gene microsynteny DOI: 10.1111/j.1469-8137.2011.03800.x
- Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids DOI: 10.1105/tpc.111.093567
- Gobe: An interactive, web-based tool for comparative genomic visualization DOI: 10.1093/bioinformatics/btr056
- Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms DOI: 10.1371/journal.pone.0028150
- Screening synteny blocks in pairwise genome comparisons through integer programming DOI: 10.1186/1471-2105-12-102
- Screening synteny blocks in pairwise genome comparisons through integer programming DOI: 10.1186/1471-2105-12-102
- Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major poaceae lineages DOI: 10.1105/tpc.110.080622
- The genome of the mesopolyploid crop species Brassica rapa DOI: 10.1038/ng.919
- The Medicago genome provides insight into the evolution of rhizobial symbioses DOI: 10.1038/nature10625
- Domestication and plant genomes DOI: 10.1016/j.pbi.2009.10.008
- Insights from the Comparison of Plant Genome Sequences DOI: 10.1146/annurev-arplant-042809-112235
- A draft physical map of a D-genome cotton species (Gossypium raimondii) DOI: 10.1186/1471-2164-11-395
- Angiosperm genome comparisons reveal early polyploidy in the monocot lineage DOI: 10.1073/pnas.0908007107
- Domestication and plant genomes DOI: 10.1016/j.pbi.2009.10.008
- Insights from the comparison of plant genome sequences DOI: 10.1146/annurev-arplant-042809-112235
- Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes DOI: 10.1186/1471-2164-11-261
- Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes DOI: 10.1186/1471-2164-11-261
- Duplication and Divergence of Grass Genomes: Integrating the Chloridoids DOI: 10.1007/s12042-009-9028-3
- Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses DOI: 10.1186/gb-2009-10-6-r68
- Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses DOI: 10.1186/gb-2009-10-6-r68
- Comparative genomics of grasses promises a bountiful harvest DOI: 10.1104/pp.108.129262
- Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization DOI: 10.1101/gr.087288.108
- Duplication and divergence of grass genomes: Integrating the chloridoids DOI: 10.1007/s12042-009-9028-3
- Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype DOI: 10.1038/hdy.2008.119
- Haplotype inference using a genetic algorithm DOI: 10.1109/CIBCB.2009.4925704
- QUBIC: A qualitative biclustering algorithm for analyses of gene expression data DOI: 10.1093/nar/gkp491
- Sixty million years in evolution of soft grain trait in grasses: Emergence of the softness locus in the common ancestor of pooideae and ehrhartoideae, after their divergence from panicoideae DOI: 10.1093/molbev/msp076
- The Sorghum bicolor genome and the diversification of grasses DOI: 10.1038/nature07723
- Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids DOI: 10.1104/pp.108.124867
- Synteny and collinearity in plant genomes DOI: 10.1126/science.1153917
- The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) DOI: 10.1038/nature06856
- Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps DOI: 10.1101/gr.080978.108
- Extensive concerted evolution of rice paralogs and the road to regaining independence DOI: 10.1534/genetics.107.073197
- Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences DOI: 10.1111/j.1469-8137.2006.01665.x
- Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences DOI: 10.1111/j.1469-8137.2006.01665.x
- Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses DOI: 10.1073/pnas.0502365102
- Haplotype inference using a genetic algorithm DOI: 10.1109/CIBCB.2009.4925704
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Co-workers & collaborators
- JS
James Schnable
- XZ
Xingtan Zhang
- WY
Won Yim
- CM
Chenyong Miao
NE, US
- JC
John C. Cushman
- DK
Dylan K. Kosma