Haibao Tang

Scientist and Software Engineer (Computational Biology)

Mountain View, CA

Publications

  • An improved genome release (version Mt4.0) for the model legume Medicago truncatula DOI: 10.1186/1471-2164-15-312
  • Early History of the Angiosperms DOI: 10.1016/B978-0-12-417163-3.00008-1
  • Insights into the Common Ancestor of Eudicots DOI: 10.1016/B978-0-12-417163-3.00006-8
  • Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) DOI: 10.1186/gb-2013-14-5-r41
  • PGDD: A database of gene and genome duplication in plants DOI: 10.1093/nar/gks1104
  • Seed shattering in a wild sorghum is conferred by a locus unrelated to domestication DOI: 10.1073/pnas.1305213110
  • The Amborella genome and the evolution of flowering plants DOI: 10.1126/science.1241089
  • Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy DOI: 10.1534/genetics.111.137349
  • MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity DOI: 10.1093/nar/gkr1293
  • Profiling of gene duplication patterns of sequenced teleost genomes: Evidence for rapid lineage-specific genome expansion mediated by recent tandem duplications DOI: 10.1186/1471-2164-13-246
  • Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres DOI: 10.1038/nature11798
  • The Evolution of Genome Structure DOI: 10.4172/2324-8548.1000e105
  • The tomato genome sequence provides insights into fleshy fruit evolution DOI: 10.1038/nature11119
  • Unleashing the Genome of Brassica Rapa DOI: 10.3389/fpls.2012.00172
  • Unleashing the genome of Brassica rapa DOI: 10.3389/fpls.2012.00172
  • Comparative analysis of peanut NBS-LRR gene clusters suggests evolutionary innovation among duplicated domains and erosion of gene microsynteny DOI: 10.1111/j.1469-8137.2011.03800.x
  • Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage DOI: 10.1016/j.ygeno.2011.02.007
  • A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure DOI: 10.1186/gb-2011-12-5-r48
  • Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage DOI: 10.1016/j.ygeno.2011.02.007
  • Comparative analysis of peanut NBS-LRR gene clusters suggests evolutionary innovation among duplicated domains and erosion of gene microsynteny DOI: 10.1111/j.1469-8137.2011.03800.x
  • Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids DOI: 10.1105/tpc.111.093567
  • Gobe: An interactive, web-based tool for comparative genomic visualization DOI: 10.1093/bioinformatics/btr056
  • Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms DOI: 10.1371/journal.pone.0028150
  • Screening synteny blocks in pairwise genome comparisons through integer programming DOI: 10.1186/1471-2105-12-102
  • Screening synteny blocks in pairwise genome comparisons through integer programming DOI: 10.1186/1471-2105-12-102
  • Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major poaceae lineages DOI: 10.1105/tpc.110.080622
  • The genome of the mesopolyploid crop species Brassica rapa DOI: 10.1038/ng.919
  • The Medicago genome provides insight into the evolution of rhizobial symbioses DOI: 10.1038/nature10625
  • Domestication and plant genomes DOI: 10.1016/j.pbi.2009.10.008
  • Insights from the Comparison of Plant Genome Sequences DOI: 10.1146/annurev-arplant-042809-112235
  • A draft physical map of a D-genome cotton species (Gossypium raimondii) DOI: 10.1186/1471-2164-11-395
  • Angiosperm genome comparisons reveal early polyploidy in the monocot lineage DOI: 10.1073/pnas.0908007107
  • Domestication and plant genomes DOI: 10.1016/j.pbi.2009.10.008
  • Insights from the comparison of plant genome sequences DOI: 10.1146/annurev-arplant-042809-112235
  • Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes DOI: 10.1186/1471-2164-11-261
  • Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes DOI: 10.1186/1471-2164-11-261
  • Duplication and Divergence of Grass Genomes: Integrating the Chloridoids DOI: 10.1007/s12042-009-9028-3
  • Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses DOI: 10.1186/gb-2009-10-6-r68
  • Comparative genomic analysis of C4 photosynthetic pathway evolution in grasses DOI: 10.1186/gb-2009-10-6-r68
  • Comparative genomics of grasses promises a bountiful harvest DOI: 10.1104/pp.108.129262
  • Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization DOI: 10.1101/gr.087288.108
  • Duplication and divergence of grass genomes: Integrating the chloridoids DOI: 10.1007/s12042-009-9028-3
  • Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype DOI: 10.1038/hdy.2008.119
  • Haplotype inference using a genetic algorithm DOI: 10.1109/CIBCB.2009.4925704
  • QUBIC: A qualitative biclustering algorithm for analyses of gene expression data DOI: 10.1093/nar/gkp491
  • Sixty million years in evolution of soft grain trait in grasses: Emergence of the softness locus in the common ancestor of pooideae and ehrhartoideae, after their divergence from panicoideae DOI: 10.1093/molbev/msp076
  • The Sorghum bicolor genome and the diversification of grasses DOI: 10.1038/nature07723
  • Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids DOI: 10.1104/pp.108.124867
  • Synteny and collinearity in plant genomes DOI: 10.1126/science.1153917
  • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) DOI: 10.1038/nature06856
  • Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps DOI: 10.1101/gr.080978.108
  • Extensive concerted evolution of rice paralogs and the road to regaining independence DOI: 10.1534/genetics.107.073197
  • Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences DOI: 10.1111/j.1469-8137.2006.01665.x
  • Phylogenetic relationships in Elymus (Poaceae: Triticeae) based on the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences DOI: 10.1111/j.1469-8137.2006.01665.x
  • Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses DOI: 10.1073/pnas.0502365102
  • Haplotype inference using a genetic algorithm DOI: 10.1109/CIBCB.2009.4925704

Haibao Tang's public data