Genomica Microbiana

Publications

• Vibrio sonorensis sp. nov. isolated from a cultured oyster Crassostrea gigas
• Field and Experimental Evidence of Vibrio parahaemolyticus as the Causative Agent of Acute Hepatopancreatic Necrosis Disease of Cultured Shrimp (Litopenaeus vannamei) in Northwestern Mexico
• Pathogenic Vibrio parahaemolyticus isolated from biofouling on commercial vessels and harbor structures
• Vibrio mexicanus sp nov., isolated from a cultured oyster Crassostrea corteziensis
• Use of bacteriophage vB_Pd_PDCC‐1 as biological control agent of Photobacterium damselae subsp. damselae during hatching of longfin yellowtail ( Seriola rivoliana ) eggs
• The famlily vibrionaceae
• Streptococcus penaeicida sp. Nov., isolated from a diseased farmed pacific white shrimp (Penaeus vannamei)
• International committee on systematics of prokaryotes subcommittee on the taxonomy of aeromonadaceae, vibrionaceae and related organisms minutes of the meeting, 13 November 2017, Chicago, USA
• Molecular variability and genetic structure of white spot syndrome virus strains from northwest Mexico based on the analysis of genomes
• Virulence of the fish pathogen Aeromonas dhakensis: genes involved, characterization and histopathology of experimentally infected hybrid tilapia
• Spatiotemporal distribution of Vibrio parahaemolyticus in relation to environmental parameters in a coastal lagoon on the Pacific coast of northwestern Mexico,Distribución espaciotemporal de Vibrio parahaemolyticus con relación a los parámetros ambientales en una laguna costera en la costa del Pacífico del noroeste de México
• Biosorption of cadmium and lead using suspended and immobilized Enterobacter cloacae at different pH
• Effect of temperature and dietary lipid proportion on gut microbiota in yellowtail kingfish Seriola lalandi juveniles
• Vibrio barjaei sp. nov., a new species of the Mediterranei clade isolated in a shellfish hatchery
• Toxigenic V. cholerae, V. parahaemolyticus, and V. vulnificus in oysters from the Gulf of Mexico and sold in Mexico City
• Unique and conserved genome regions in Vibrio harveyi and related species in comparison with the shrimp pathogen Vibrio harveyi CAIM 1792
• Advanced microbial taxonomy combined with genome-based-approaches reveals that vibrio astriarenae sp. Nov., an agarolytic marine bacterium, forms a new clade in Vibrionaceae
• Draft genome sequence of a mexican community-associated methicillin- resistant Staphylococcus epidermidis strain
• Draft genome sequence of Pseudoalteromonas piscicida strain 36Y_RITHPW, a hypersaline seawater isolate from the south coast of Sonora, Mexico
• Genetic characterization of Vibrio vulnificus strains isolated from oyster samples in Mexico
• Corrigendum to “Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan” [Syst. Appl. Microbiol. 40 (5) (2017) 290–296](S0723202017300607)(10.1016/j.syapm.2017.04.003))
• Corrigendum to “Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan” [Syst. Appl. Microbiol. 39 (5) (2016) 330–335](S0723202016300030)(10.1016/j.syapm.2016.04.002)
• Draft genome sequence of Escherichia coli strain M15-4, a typical enteropathogenic E. coli strain isolated in Mexico
• Genetic analysis of Vibrio parahaemolyticus O3:K6 strains that have been isolated in Mexico since 1998
• Quantification of Vibrio species in oysters from the Gulf of Mexico with two procedures based on MPN and PCR
• Molecular and genomic characterization of vibrio mimicus isolated from a frozen shrimp processing facility in Mexico
• Whole-genome sequencing of Staphylococcus aureus L401, a mecA-negative community-associated methicillin-resistant strain isolated from a healthy carrier
• Thaumasiovibrio occultus gen. nov. sp. nov. and Thaumasiovibrio subtropicus sp. nov. within the family Vibrionaceae, isolated from coral reef seawater off Ishigaki Island, Japan
• Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan
• Overfeeding a High-Fat Diet Promotes Sex-Specific Alterations on the Gut Microbiota of the Zebrafish (Danio rerio)
• Bacterial communities of the oysters crassostrea corteziensis and c. Sikamea of cospita bay, Sinaloa, Mexico
• Photobacterium sanguinicancri sp. nov. isolated from marine animals
• Isolation of Vibrionaceae from wild blue mussel (Mytilus edulis) adults and their impact on blue mussel larviculture
• Probiotic modulation of the gut bacterial community of juvenile Litopenaeus vannamei challenged with Vibrio parahaemolyticus CAIM 170,Modulación por probióticos de la comunidad bacteriana intestinal de juveniles de Litopenaeus vannamei infectados con Vibrio parahaemolyticus CAIM 170
• A preliminary study of the effect of total fishmeal replacement with different dietary sources on the gut microbiota of spotted rose snapper juvenile ( Lutjanus guttatus Steindachner, 1869)
• Genomic characterization of closely related species in the Rumoiensis clade infers ecogenomic signatures to non-marine environments
• OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters
• Artisanal Fresco cheese from Sonora: Physicochemical composition, microbial quality, and bacterial characterization by high‐throughput sequencing
• Genomic and molecular evolutionary dynamics of transcriptional response regulator genes in bacterial species of the Harveyi clade of Vibrio
• Core and Accessory Genome Analysis of Vibrio mimicus
• Inhibition of Batrachochytrium dendrobatidis Infection by Skin Bacterial Communities in Wild Amphibian Populations
• Soy protein concentrate effects on gut microbiota structure and digestive physiology of Totoaba macdonaldi
• Draft Genome Sequence of Vibrio parahaemolyticus Strain M0605, Which Causes Severe Mortalities of Shrimps in Mexico
• Draft Genome Sequences of Two Vibrionaceae Species, Vibrio ponticus C121 and Photobacterium aphoticum C119, Isolated as Coral Reef Microbiota
• Exploring the Genome of Cheese Starter Lactic Acid Bacterium Lactococcus lactis subsp. lactis CECT 4433
• Corrigendum: Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov
• Draft Genome Sequence of Salmonella enterica subsp. enterica Serotype Oranienburg Strain S-76, Isolated from an Aquatic Environment
• Draft Genome Sequence of Salmonella enterica subsp. enterica Serotype Saintpaul Strain S-70, Isolated from an Aquatic Environment
• Vibrio crosai sp. nov., isolated from a cultured oyster Crassostrea gigas
• Reciprocal effect of temperature and dietary lipids on metabolic performance and gut microbiota of Yellowtail kingfish ( Seriola lalandi ) juveniles
• Effects of enrofloxacin and florfenicol on survival and bacterial population in an experimental infection with luminescent Vibrio campbellii in shrimp larvae of Litopenaeus vannamei
• Outbreak of gastroenteritis caused by the pandemic Vibrio parahaemolyticus O3 : K6 in Mexico
• Litopenaeus vannamei, from Northwestern Mexico
• Shrimp Diseases and Molecular Diagnostic Methods
• Prophylactic treatments for surface disinfection of spotted rose snapper Lutjanus guttatus eggs
• Probiotics in the Larval Culture of Aquatic Organisms
• Phenotypic diversity amongst Vibrio isolates from marine aquaculture systems
• Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii
• Bacterial Fish Diseases and Molecular Tools for Bacterial Fish Pathogens Detection
• Cadmium and zinc removal from aqueous solutions by Bacillus jeotgali: pH, salinity and temperature effects
• Draft genome sequence of Vibrio mimicus strain CAIM 602T
• Probiotics in the intestinal tract of juvenile whiteleg shrimp Litopenaeus vannamei: modulation of the bacterial community
• Virulence of Vibrio harveyi responsible for the “Bright-red” Syndrome in the Pacific white shrimp Litopenaeus vannamei
• Photobacterium swingsii sp. nov., isolated from marine organisms.
• Vibrio plantisponsor sp. nov., a diazotrophic bacterium isolated from a mangrove associated wild rice (Porteresia coarctata Tateoka).
• Molecular identification of Vibrio harveyi-related isolates associated with diseased aquatic organisms
• Vibrio sinaloensis sp nov., isolated from the spotted rose snapper, Lutjanus guttatus Steindachner, 1869
• Multilocus sequence analysis reveals that Vibrio harveyi and V-campbellii are distinct species
• Vibrios of the spotted rose snapper Lutjanus guttatus Steindachner, 1869 from northwestern Mexico
• Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp nov.
• Cu and Pb biosorption on Bacillus thioparans strain U3 in aqueous solution: Kinetic and equilibrium studies
• Draft genome sequence of the shrimp pathogen Vibrio harveyi CAIM 1792
• Identification and virulence of Aeromonas dhakensis, Pseudomonas mosselii and Microbacterium paraoxydans isolated from Nile tilapia, Oreochromis niloticus, cultivated in Mexico
• Probiotics in the intestinal tract of juvenile whiteleg shrimp Litopenaeus vannamei: modulation of the bacterial community
• Relationship of aquatic environmental factors with the abundance of Vibrio cholerae, Vibrio parahaemolyticus, Vibrio mimicus and Vibrio vulnificus in the coastal area of Guaymas, Sonora, Mexico
• Vibrio alfacsensis sp nov., isolated from marine organisms
• Virulence of Vibrio harveyi responsible for the "Bright-red" Syndrome in the Pacific white shrimp Litopenaeus vannamei
• Beneficial effects of four Bacillus strains on the larval cultivation of Litopenaeus vannamei
• 'Bright-red' syndrome in Pacific white shrimp Litopenaeus vannamei is caused by Vibrio harveyi
• Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii
• Density of Vibrios in Hemolymph and Hepatopancreas of Diseased Pacific White Shrimp, Litopenaeus vannamei, from Northwestern Mexico
• Diversity of vibrios in the haemolymph of the spider crab Maja brachydactyla
• Bactericidal effect of lactoferrin and lactoferrin chimera against halophilic Vibrio parahaemolyticus
• Detection and characterization of hepatitis A virus and Norovirus in estuarine water samples using ultrafiltration - RT-PCR integrated methods (vol 106, pg 1579, 2009)
• Detection and Identification of tdh- and trh-Positive Vibrio parahaemolyticus Strains from Four Species of Cultured Bivalve Molluscs on the Spanish Mediterranean Coast
• Genomic diversity of vibrios associated with the Brazilian coral Mussismilia hispida and its sympatric zoanthids (Palythoa caribaeorum, Palythoa variabilis and Zoanthus solanderi)
• Inhibition of Salmonella spp. isolated from mango using bacteriocin-like produced by lactobacilli Inhibicion de Salmonella spp. aislada de mango usando sustancias tipo bacteriocinas producidas por lactobacilos
• Cadmium and zinc removal from aqueous solutions by Bacillus jeotgali: pH, salinity and temperature effects
• The Vibrio core group induces yellow band disease in Caribbean and Indo-Pacific reef-building corals
• Effects of enrofloxacin and florfenicol on survival and bacterial population in an experimental infection with luminescent Vibrio campbellii in shrimp larvae of Litopenaeus vannamei
• Outbreak of gastroenteritis caused by the pandemic Vibrio parahaemolyticus O3 : K6 in Mexico
• Recent advances in the production and use of Tisbe monozota Bowman, 1962 (Copepoda: Harpacticoidea: Tisbidae) in high-density cultures, and maintained under control conditions
• Evaluation of the susceptibility of the cultured shrimp Litopenaeus vannamei to vibriosis when orally exposed to the insecticide methyl parathion
• Vibrio hispanicus sp nov., isolated from Artemia sp and sea water in Spain
• Assessment of fluorescent-labeled bacteria for evaluation of in vivo uptake of bacteria (Vibrio spp.) by crustacean larvae
• Effect of methyl parathion on the susceptibility of shrimp Litopenaeus vannamei to experimental vibriosis
• Phenotypic diversity amongst Vibrio isolates from marine aquaculture systems
• Therapeutic effects of enrofloxacin in an experimental infection with a luminescent Vibrio harveyi in Artemia franciscana Kellog 1906
• Vibrio kanaloae sp nov., Vibrio pomeroyi sp nov and Vibrio chagasii sp nov., from sea water and marine animals
• Vibrio neptunius sp nov., Vibrio brasiliensis sp nov and Vibrio xuii sp nov., isolated from the marine aquaculture environment (bivalves, fish, rotifers and shrimps)
• The use and selection of probiotic bacteria for use in the culture of larval aquatic organisms
• Vibriostrains isolated from cultured penaeid shrimp
• A comparison between total viable count by spread plating and AquaPlak® for enumeration of bacteria in water from a shrimp farm
• Species of Vibrio isolated from hepatopancreas, haemolymph and digestive tract of a population of healthy juvenile Penaeus vannamei
• Standardization of the bioencapsulation of enrofloxacin and oxytetracycline in Artemia franciscana Kellogg, 1906
• Vibrio pacinii sp nov., from cultured aquatic organisms
• Vibrio rotiferianus sp nov., isolated from cultures of the rotifer Brachionus plicatilis
• Virulence of luminous vibrios to Artemia franciscana nauplii
• Culture of Vibrio alginolyticus C7b, a potential probiotic bacterium, with the microalga Chaetoceros muelleri
• Enterovibrio norvegicus gen. nov., sp nov., isolated from the gut of turbot (Scophthalmus maximus) larvae: a new member of the family Vibrionaceae
• Plasmid profiling and antibiotic resistance of Vibrio strains isolated from cultured penaeid shrimp
• In vitro susceptibility to 15 antibiotics of vibrios isolated from penaeid shrimps in Northwestern Mexico
• Oral challenge of postlarvae of Litopenaeus vannamei through bioencapsulation of Vibrio parahaemolyticus in Artemia franciscana
• The use and selection of probiotic bacteria for use in the culture of larval aquatic organisms
• Vibrios associated with Litopenaeus vannamei larvae, postlarvae, broodstock, and hatchery probionts
• Bioencapsulation of two different Vibrio species in nauplii of the brine shrimp (Artemia franciscana)
• Delivery of bioencapsulated oxytetracycline to the marine shrimp Penaeus monodon
• Development of a bath challenge for the marine shrimp Penaeus vannamei Boone, 1931
• Species of Vibrio isolated from hepatopancreas, haemolymph and digestive tract of a population of healthy juvenile Penaeus vannamei
• A comparison between total viable count by spread plating and AquaPlak© for enumeration of bacteria in water from a shrimp farm
• Chemical desinfection of Artemia nauplii
• Global m6A RNA Methylation in SARS-CoV-2 Positive Nasopharyngeal Samples in a Mexican Population: A First Approximation Study
• Genomic and biological characterization of the novel phages vB_VpaP_AL-1 and vB_VpaS_AL-2 infecting Vibrio parahaemolyticus associated with acute hepatopancreatic necrosis disease (AHPND)
• Regional epidemic dynamics and Delta variant diversity resulted in varying rates of spread of Omicron-BA.1 in Mexico
• Genomic Characterization of Twelve Lytic Bacteriophages Infecting Midgut Bacteria of Aedes aegypti
• Microbial gut dysbiosis induced by xenobiotics in model organisms and the relevance of experimental criteria: a minireview
• SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations
• Vibrio eleionomae sp. nov., isolated from shrimp (Penaeus vannamei) pond water
• Genomic Profiling of Antibiotic-Resistant Escherichia coli Isolates from Surface Water of Agricultural Drainage in North-Western Mexico: Detection of the International High-Risk Lineages ST410 and ST617
• Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico
• Prevalence and Genomic Diversity of Salmonella enterica Recovered from River Water in a Major Agricultural Region in Northwestern Mexico
• A metagenomic assessment of microbial communities in anaerobic bioreactors and sediments: Taxonomic and functional relationships
• Probiotics in the larval culture of aquatic organisms
• Prophylactic treatments for surface disinfection of spotted rose snapper Lutjanus guttatus eggs,Tratamientos profilácticos para desinfectar la superficie de huevos del pargo flamenco Lutjanus guttatus
• Draft genome sequence of Vibrio mimicus strain CAIM 602T
• Density of vibrios in hemolymph and hepatopancreas of diseased pacific white shrimp, Litopenaeus vannamei, from Northwestern Mexico
• Erratum: Vibrio hispanicus sp. nov., isolated from Artemia sp. and sea water in Spain (International Journal of Systematic and Evolutionary Microbiology vol. 54 (1) (261-265))
• A review on the use of microorganisms as probiotics
• Bioencapsulation of two different vibrio species in nauplii of the brine shrimp (Anemia franciscana)
• Evaluation of oxytetracycline concentration in shrimp postlarval tissues offered through Artemia nauplii and medicated bath,Evaluación de la concentración de oxitetraciclina en tejidos de camarón suministrada a través de nauplios de Artemia y de un baño medicado
• Delivery of Bioencapsulated Oxytetracycline to the Marine Shrimp Penaeus monodon
• Vibrio2005: The First International Conference on the Biology of Vibrios
• Pathogenicity and colonization of Litopenaeus vannamei larvae by luminescent vibrios
• Therapeutic, histopathological, and non-specific immune status effect of Rhizophora mangle and Laguncularia racemose hydroalcoholic extracts against Vibrio harveyi and Vibrio campbellii in white shrimp (Penaeus vannamei)
• Genomic Surveillance of SARS-CoV-2 in México: Three Years since Wuhan, China’s First Reported Case
• Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover
• SARS-CoV-2 Genomic Surveillance in Nayarit, Mexico (Summer-Winter 2021-2022)
• Harnessing Emergent Properties of Microbial Consortia: Assembly of the Xilonen SynCom
• Detection of SARS-CoV-2 in drainage systems from tourist buses and bus station in Mexico
• Genomic Characterization of Bacillus pumilus Sonora, a Strain with Inhibitory Activity against Vibrio parahaemolyticus-AHPND and Probiotic Candidate for Shrimp Aquaculture