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Gaurav Kandoi

0000-0003-0559-9481

PhD Candidate (Bioinformatics and computational biology not elsewhere classified)

Ames, USA

- PhD in Bioinformatics and Computational Biology with a focus on developing machine learning methods for mRNA function prediction. - 6+ years of experience performing feature generation, feature selection, optimization, classification, regression and data visualization. - 5 years of experience in developing computational pipelines for Next-Generation Sequencing (NGS) data analysis. Technical Skills - 1. Programming: Python, R, Unix, SQL, MATLAB 2. Experience building computational pipelines in High Performance Computing (HPC) environments 3. Tools of the trade: Singularity and Docker containers, Tensorflow, R shiny, Jupyter Notebooks, RNA-Seq analysis, Visualization (Cytoscape, Gephi), Data Science platforms (Weka, Rapidminer)

Publications

  • https://doi.org/10.3389/fphys.2015.00366
  • https://doi.org/10.1007/978-1-4939-6406-2_4
  • https://doi.org/10.1093/database/bau112
  • https://doi.org/10.1016/j.bpj.2017.11.2334
  • https://doi.org/10.1109/BIBM.2017.8217993
  • https://doi.org/10.1016/S0972-6292(16)30480-6

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Co-workers & collaborators

Julie Dickerson

Professor - Ames, Iowa

Julie Dickerson

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