Eduardo Castro nallar

Publications

• Biotransformation of 2,4,6-Trinitrotoluene by Pseudomonas sp. TNT3 isolated from Deception Island, Antarctica
• Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association.
• Genetic Characterization of Salmonella Infantis with Multiple Drug Resistance Profiles Isolated from a Poultry-Farm in Chile.
• Nasopharyngeal metatranscriptome profiles of infants with bronchiolitis and risk of childhood asthma: a multicentre prospective study.
• Influence of Physical-Chemical Soil Parameters on Microbiota Composition and Diversity in a Deep Hyperarid Core of the Atacama Desert.
• Altered Middle Ear Microbiome in Children With Chronic Otitis Media With Effusion and Respiratory Illnesses
• Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance
• Arsenic Response of Three Altiplanic Exiguobacterium Strains With Different Tolerance Levels Against the Metalloid Species: A Proteomics Study
• A first insight into the structure and function of rhizosphere microbiota in Antarctic plants using shotgun metagenomic
• Genomic Variation and Arsenic Tolerance Emerged as Niche Specific Adaptations by Different Exiguobacterium Strains Isolated From the Extreme Salar de Huasco Environment in Chilean – Altiplano
• Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
• A First Insight into the Microbial and Viral Communities of Comau Fjord—A Unique Human-Impacted Ecosystem in Patagonia (42∘ S)
• The Transcription Factor ArcA Modulates Salmonella’s Metabolism in Response to Neutrophil Hypochlorous Acid-Mediated Stress
• Nasal Bacteriomes of Patients with Asthma and Allergic Rhinitis Show Unique Composition, Structure, Function and Interactions
• Variability in Genomic and Virulent Properties of Porphyromonas gingivalis Strains Isolated From Healthy and Severe Chronic Periodontitis Individuals.
• Composition and structure of the skin microbiota of rorquals off the Eastern South Pacific
• Rhodococcus comparative genomics reveals a phylogenomic-dependent non-ribosomal peptide synthetase distribution: insights into biosynthetic gene cluster connection to an orphan metabolite
• In-Depth Genomic and Phenotypic Characterization of the Antarctic Psychrotolerant Strain Pseudomonas sp. MPC6 Reveals Unique Metabolic Features, Plasticity, and Biotechnological Potential
• In infants with severe bronchiolitis: dual-transcriptomic profiling of nasopharyngeal microbiome and host response
• Analysis of co-regulated abundance of genes associated with arsenic and phosphate metabolism in Andean Microbial Ecosystems
• Copper-induced concomitant increases in photosynthesis, respiration, and C, N and S assimilation revealed by transcriptomic analyses in Ulva compressa (Chlorophyta)
• Monitoring the occurrence of microplastic ingestion in Otariids along the Peruvian and Chilean coasts
• Seasonal and Spatially Distributed Viral Metagenomes from Comau Fjord (42°S), Patagonia
• Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data
• Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii).
• Radiation induced toxicity in rectal epithelial stem cell contributes to acute radiation injury in rectum
• Fecal Metagenomes and Metagenome-Assembled Genomes from the South American Sea Lion (Otaria flavescens) from the Comau Fjord (42°S), Patagonia
• A global metagenomic map of urban microbiomes and antimicrobial resistance
• Source and acquisition of rhizosphere microbes in Antarctic vascular plants.
• Long-Term Interactions of Salmonella Enteritidis With a Lytic Phage for 21 Days in High Nutrients Media.
• Comparative Analysis of Metagenomics and Metataxonomics for the Characterization of Vermicompost Microbiomes.
• Predicting climate change-related genetic offset for the endangered southern South American conifer Araucaria araucana
• Radiation-induced toxicity in rectal epithelial stem cell contributes to acute radiation injury in rectum
• COVID-19 drug practices risk antimicrobial resistance evolution
• Phosphate-Arsenic Interactions in Halophilic Microorganisms of the Microbial Mat from Laguna Tebenquiche: from the Microenvironment to the Genomes
• Spatially and Temporally Explicit Metagenomes and Metagenome-Assembled Genomes from the Comau Fjord (42°S), Patagonia
• Patterns in the Juan Fernandez fur seal faecal microbiome
• Rapid sequence modification in the highly polymorphic region (HPR) of the hemagglutinin gene of the infectious salmon anaemia virus (ISAV) suggests intra‐segmental template switching recombination
• Soil microbiome as driver for plant invasion success
• Living to the High Extreme: Unraveling the Composition, Structure, and Functional Insights of Bacterial Communities Thriving in the Arsenic-Rich Salar de Huasco Altiplanic Ecosystem
• Genomic and Physiological Traits of the Marine Bacterium Alcaligenes aquatilis QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors
• Origin, genomic diversity and microevolution of the Clostridium difficile B1/NAP1/RT027/ST01 strain in Costa Rica, Chile, Honduras and Mexico
• Sequences of Endophytic Fungal and Bacterial Communities from Araucaria araucana [(Molina) K. Koch, 1869] in the Coastal and Andes Mountain Ranges, Chile
• Evaluation of computational methods for human microbiome analysis using simulated data
• Living to the high extreme: unraveling the composition, structure, and functional insights of bacterial communities thriving in the arsenic-rich Salar de Huasco – Altiplanic ecosystem
• Detection of SARS-CoV-2 in Wastewater Associated with Scientific Stations in Antarctica and Possible Risk for Wildlife
• Detection of SARS-CoV-2 in Wastewater Associated with Scientific Stations in Antarctica and Possible Risk for Wildlife
• Pediatric urinary tract infections caused by poultry-associated Escherichia coli
• Microbiome alterations are associated with ApoE mutation in Octodon degus and humans with Alzheimer's disease
• The Genome of the Marine Alga Ulva compressa (Chlorophyta) Reveals Protein-Coding Genes with Similarity to Plants and Green Microalgae, but Also to Animal, Bacterial, and Fungal Genes
• Metagenomic exploration of soils microbial communities associated to Antarctic vascular plants
• Multilocus Sequence Typing of Pathogens: Methods, Analyses, and Applications
• Comparative Genomics Analysis of a New Exiguobacterium Strain from Salar de Huasco Reveals a Repertoire of Stress-Related Genes and Arsenic Resistance
• DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants
• Genome Sequence of Streptomyces sp. H-KF8, a Marine Actinobacterium Isolated from a Northern Chilean Patagonian Fjord
• Molecular phylodynamics and protein modeling of infectious salmon anemia virus (ISAV)
• Draft Genome Sequences of Five Enterococcus Species Isolated from the Gut of Patients with Suspected Clostridium difficile Infection
• Cyclic AMP Regulates Bacterial Persistence through Repression of the Oxidative Stress Response and SOS-Dependent DNA Repair in Uropathogenic Escherichia coli
• Comparative genomic analysis of a new tellurite-resistant Psychrobacter strain isolated from the Antarctic Peninsula
• Genome sequence of two members of the chloroaromatic-degrading {MT} community: Pseudomonas reinekei {MT1} and Achromobacter xylosoxidans {MT3}
• Multilocus Sequence Typing of Pathogens: Methods, Analyses, and Applications. Methods, Analyses, and Applications.
• Computational Methods for Human Microbiome Analysis
• The temporal dynamics of the tracheal microbiome in tracheostomised patients with and without lower respiratory infections
• Metagenomic exploration of soils microbial communities associated to Antarctic vascular plants
• Continuous bioreactors enable high-level bioremediation of diesel-contaminated seawater at low and mesophilic temperatures using Antarctic bacterial consortia: Pollutant analysis and microbial community composition
• Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data
• Exploring the Influence of Small-Scale Geographical and Seasonal Variations Over the Microbial Diversity in a Poly-extreme Athalosaline Wetland
• Pathoscope: Species identification and strain attribution with unassembled sequencing data
• Concordance and discordance of sequence survey methods for molecular epidemiology
• MP20-07 ALL ASYMPTOMATIC BACTERIURIA, ALL THE TIME
• tat Exon 1 Exhibits Functional Diversity during HIV-1 Subtype C Primary Infection
• The evolution of HIV: Inferences using phylogenetics
• Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma
• Genetic diversity and molecular epidemiology of HIV transmission
• MP20-08 PYURIA AND ASYMPTOMATIC BACTERIURIA IS ASSOCIATED WITH NOVEL AND SPECIFIC URINE MICROBIOMES
• Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls
• Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes
• PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples
• Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data
• Phage cluster relationships identified through single gene analysis
• Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology
• Redefining Healthy Urine: A Cross-Sectional Exploratory Metagenomic Study of People With and Without Bladder Dysfunction
• Pathogen typing in the genomics era: MLST and the future of molecular epidemiology
• Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities
• Draft Genome Sequence of a Multi-Metal Resistant Bacterium Pseudomonas putida ATH-43 Isolated from Greenwich Island, Antarctica
• Genome Sequence of Clostridium paraputrificum 373-A1 Isolated in Chile from a Patient Infected with Clostridium difficile
• Androgen Receptor Gene CAG and GGN Repeat Polymorphisms in Chilean Men With Primary Severe Spermatogenic Failure
• Population Genomics and Phylogeography of an Australian Dairy Factory Derived Lytic Bacteriophage
• Single-Molecule Long-Read 16S Sequencing To Characterize the Lung Microbiome from Mechanically Ventilated Patients with Suspected Pneumonia
• Mutation and recombination in pathogen evolution: Relevance, methods and controversies
• Genomic Analysis of 48 Paenibacillus larvae Bacteriophages
• Microbial sequence typing in the genomic era
• Copper-induced increased expression of genes involved in photosynthesis, carotenoid synthesis and C assimilation in the marine alga Ulva compressa
• The transcription factor SlyA from Salmonella Typhimurium regulates genes in response to hydrogen peroxide and sodium hypochlorite
• Tracheal Microbiota in Patients With a Tracheostomy Before, During and After an Acute Respiratory Infection
• Complete genome sequence of the marine Rhodococcus sp. H-CA8f isolated from Comau fjord in Northern Patagonia, Chile
• High-Level Bioremediation of Diesel Contaminated Seawater in Continuous and Batch Bioreactors Using Antarctic Bacterial Consortia: Pollutant Analysis and Microbial Community Dynamics at Cold and Mesophilic Temperatures
• Role of Microbes in the degradation of organic semivolatile compounds in polar ecosystems: A review
• Characterization of the upper respiratory tract microbiota in Chilean asthmatic children reveals compositional, functional, and structural differences
• Levels of persistent organic pollutants (POPs) in the Antarctic atmosphere over time (1980 to 2021) and estimation of their atmospheric half-lives
• The oral bacteriomes of patients with allergic rhinitis and asthma differ from that of healthy controls
• Transcriptomic analyses reveal increased expression of dioxygenases, monooxygenases, and other metabolizing enzymes involved in anthracene degradation in the marine alga Ulva lactuca
• Fungal endophyte symbionts enhance plant adaptation in Antarctic habitats
• Peer Review #1 of "Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance (v0.1)"
• Microbial Sequence Typing Strategies for Genetic and Genomic Data
• Microbial Sequence Typing Strategies for Genetic and Genomic Data
• Life on the edge: Microbial diversity, resistome, and virulome in soils from the union glacier cold desert
• Distribution and Bioconcentration of Semi-Volatile Organic Compounds (Svocs) in Soils and Vascular Plant Colobanthus Quitensis from Sub-Antarctic and Antarctic Regions
• Microbiome alterations are associated with apolipoprotein E mutation in Octodon degus and humans with Alzheimer's disease
• Characterization of the oral mycobiome of Portuguese with allergic rhinitis and asthma
• Source and acquisition of rhizosphere microbes in Antarctic vascular plants
• Nasopharyngeal metatranscriptome profiles of infants with bronchiolitis and risk of childhood asthma: a multicentre prospective study
• A First Insight into the Microbial and Viral Communities of Comau Fjord—A Unique Human-Impacted Ecosystem in Patagonia (42° S)
• Life on the edge: microbial diversity, resistome, and virulome in soils from the Union Glacier cold desert
• Occurrence and diffusive air-seawater exchanges of organochlorine pesticides (OCPs) and polychlorinated biphenyls (PCBs) in Fildes Bay, King George Island, Antarctica
• Pediatric urinary tract infections caused by poultry-associated Escherichia coli
• From sewage to genomes: expanding our understanding of the urban and semi-urban wastewater RNA virome.
• From sewage to genomes: Expanding our understanding of the urban and semi-urban wastewater RNA virome