Dario Grattapaglia

Publications

• https://orcid.org/0000-0002-0050-970X
• Use of genetic markers to build a new generation of Eucalyptus pilularis breeding population
• Examining the cause of high inbreeding depression: Analysis of whole-genome sequence data in 28 selfed progeny of Eucalyptus grandis
• Parentage reconstruction in Eucalyptus nitens using SNPs and microsatellite markers: A comparative analysis of marker data power and robustness
• Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model
• Breeding forest trees by genomic selection: Current progress and theway forward
• Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1hybrids
• QTL mapping for resistance to Ceratocystis wilt in Eucalyptus
• Impacts of population structure and analytical models in genome-wide association studies of complex traits in forest trees: A case study in Eucalyptus globulus
• A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species
• A novel genome-wide microsatellite resource for species of Eucalyptus with linkage-to-physical correspondence on the reference genome sequence
• The genome of Eucalyptus grandis
• 5th Congress of the Brazilian Biotechnology Society: Frontiers in Biology
• Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae
• Performance of microsatellites for parentage assignment following mass controlled pollination in a clonal seed orchard of loblolly pine (Pinus taeda L.)
• Realized pollen flow and wildling establishment from a genetically modified eucalypt field trial in Southeastern Brazil
• Genomic comparison among lethal invasive strains of Streptococcus pyogenes Serotype M1
• Design and evaluation of a sequence capture system for genome-wide SNP genotyping in highly heterozygous plant genomes: a case study with a keystone Neotropical hardwood tree genome
• Environmental uniformity, site quality and tree competition interact to determine stand productivity of clonal Eucalyptus
• Genomic relationships reveal significant dominance effects for growth in hybrid Eucalyptus
• Status and Perspectives of Genomic Selection in Forest Tree Breeding
• Feeding the future
• Genomic prediction unifies animal and plant breeding programs to form platforms for biological discovery
• Development and characterization of microsatellite loci for Cedrela fissilis Vell (Meliaceae), an endangered tropical tree species
• Genetic mapping and validation of QTLs associated with resistance to Calonectria leaf blight caused by Calonectria pteridis in Eucalyptus
• Regional heritability mapping and genome-wide association identify loci for complex growth, wood and disease resistance traits in Eucalyptus
• Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus
• Genome-wide patterns of recombination, linkage disequilibrium and nucleotide diversity from pooled resequencing and single nucleotide polymorphism genotyping unlock the evolutionary history of Eucalyptus grandis
• Pollen-mediated gene flow across fragmented clonal stands of hybrid eucalypts in an exotic environment
• Age trends in genetic parameters for growth performance across country-wide provenances of the iconic conifer tree Araucaria angustifolia show strong prospects for systematic breeding and early selection
• Genomic relationship-based genetic parameters and prospects of genomic selection for growth and wood quality traits in Eucalyptus benthamii
• Pests, diseases, and aridity have shaped the genome of Corymbia citriodora
• Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree
• Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus
• Chloroplast genome assembly of Handroanthus impetiginosus: comparative analysis and molecular evolution in Bignoniaceae
• Fast and inexpensive protocols for consistent extraction of high quality DNA and RNA from challenging plant and fungal samples for high-throughput SNP genotyping and sequencing applications
• Quantitative Genetics and Genomics Converge to Accelerate Forest Tree Breeding
• Selecting for stable and productive families of Eucalyptus urophylla S.T. Blake across a country wide range of climates in Brazil
• Quantitative genetic parameters for growth and wood properties in Eucalyptus "urograndis" hybrid using near-infrared phenotyping and genome-wide SNP-based relationships.
• Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations.
• A genome-wide scan shows evidence for local adaptation in a widespread keystone Neotropical forest tree.
• Near-infrared-based models for lignin syringyl/guaiacyl ratio of Eucalyptus benthamii and E. pellita using a streamlined thioacidolysis procedure as the reference method
• Twelve Years into Genomic Selection in Forest Trees: Climbing the Slope of Enlightenment of Marker Assisted Tree Breeding
• 05 - A genotyping array of 3,400 Single Nucleotide Polymorphisms (SNPs) advances the genetic analysis of the iconic tree Araucaria angustifolia, showing that the natural populations are more differentiated than previously reported
• Hardwood Tree Genomics: Unlocking Woody Plant Biology
• Improving genomic prediction of growth and wood traits in Eucalyptus using phenotypes from non-genotyped trees by single-step GBLUP
• A cost-effective approach to DNA methylation detection by Methyl Sensitive DArT sequencing
• Application of Mixed Models and SVM in Genomic Selection of Eucalyptus Trees
• A 3K Axiom SNP array from a transcriptome-wide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze
• Enviromicsin breeding: applications and perspectives on envirotypic-assisted selection
• Patterns of DNA methylation changes in elite Eucalyptus clones across contrasting environments
• CpDNA variability in Manilkara huberi, a species under sustainable management in the Brazilian Amazon | Variabilidade no cpDNA em Manilkara huberi, espécie sob manejo sustentável na Amazônia brasileira
• Population genetic analysis and phylogeny reconstruction in Eucalyptus (Myrtaceae) using high-throughput, genome-wide genotyping
• Population analysis of vitamin D receptor polymorphisms and the role of genetic ancestry in an admixed population
• Genomic Characterization of DArT Markers Based on High-Density Linkage Analysis and Physical Mapping to the Eucalyptus Genome
• Genetic diversity and assessment of 23 microsatellite markers for parentage testing of Santa Inês hair sheep in Brazil
• Genomic selection for growth and wood quality in Eucalyptus: Capturing the missing heritability and accelerating breeding for complex traits in forest trees
• An international parentage and identification panel for the domestic cat (Felis catus)
• Allele and haplotype frequency distribution in PTPN22 gene across variable ethnic groups: Implications for genetic association studies for autoimmune diseases
• Genetic mapping provides evidence for the role of additive and non-additive QTLs in the response of inter-specific hybrids of Eucalyptus to Puccinia psidii rust infection
• Eucalyptus applied genomics: From gene sequences to breeding tools
• A reference linkage map for Eucalyptus
• Molecular markers reveal limited genetic diversity in a large germplasm collection of the biofuel crop Jatropha curcas L. in Brazil
• High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
• Genetic composition of Brazilian population samples based on a set of twenty eight ancestry informative SNPs
• High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: Assay success, polymorphism and transferability across species
• Genotyping systems for Eucalyptus based on tetra-, penta-, and hexanucleotide repeat EST microsatellites and their use for individual fingerprinting and assignment tests
• Perspectives on genome mapping and marker-assisted breeding of eucalypts
• Accelerating the domestication of trees using genomic selection: Accuracy of prediction models across ages and environments
• A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus
• Progress in Myrtaceae genetics and genomics: Eucalyptus as the pivotal genus
• Genomic selection in forest tree breeding
• Positioning of the major locus for Puccinia psidii rust resistance (Ppr1) on the Eucalyptus reference map and its validation across unrelated pedigrees
• A selected set of EST-derived microsatellites, polymorphic and transferable across 6 species of eucalyptus
• High synteny and colinearity among Eucalyptus genomes revealed by high-density comparative genetic mapping
• IUFRO tree biotechnology 2011: "from genomes to integration and delivery"
• QTL associated with resistance to defoliation (Cylindrocladium pteridis) in Eucalyptus spp
• Genome wide selection for Eucalyptusimprovement at international paper in Brazil
• Stability of Genomic Selection prediction models across ages and environments
• The Eucalyptus grandisGenome Project: Genome and transcriptome resources for comparative analysis of woody plant biology
• Biotech MERCOSUR project: an integrated genotyping and phenotyping platform of Eucalyptusgermplasm for mapping purposes
• A new set of 182 microsatellites for Eucalyptus: characterization and mapping in a four-species consensus linkage map
• Eucalyptusresearch in the post-genome era
• Genomics of Eucalyptus, a Global Tree for Energy, Paper, and Wood
• Assessment of SNPs for linkage mapping in Eucalyptus: construction of a consensus SNP/microsatellite map from two unrelated pedigrees
• Interspecific discovery and expression profiling of Eucalyptusmicro RNAs by deep sequencing
• Identification of a novel QTL contributing to rust resistance in Eucalyptus
• How many genes might underlie QTLs for growth and wood quality traits in Eucalyptus?
• Comparative assessment of SNPs and microsatellites for fingerprinting, parentage and assignment testing in species of Eucalyptus
• Genomic Selection for growth traits in Eucalyptus: accuracy within and across breeding populations
• Genome-wide SNP discovery from a pooled sample of accessions of the biofuel plant Jatropha curcasbased on whole-transcriptome Illumina resequencing
• Genome-wide genotyping and SNP discovery by ultra-deep Restriction-Associated DNA (RAD) tag sequencing of pooled samples of E. grandis and E. globulus
• Development of DArT (Diversity Arrays Technology) for high-throughput genotyping of Pinus taedaand closely related species
• Genomic characterization, high-density mapping and anchoring of DArT markers to the reference genome of Eucalyptus
• Diversity Arrays Technology (DArT) and next-generation sequencing combined: genome-wide, high throughput, highly informative genotyping for molecular breeding of Eucalyptus
• Interaction with physical activity of vitamin D receptor genotypes and bone mineral density in postmenopausal women | Interacción con la actividad física de los genotipos del receptor de la vitamina D y de la densidad mineral ósea en mujeres postmenopáusicas
• Vitamin-D-receptor genotypes and bone-mineral density in postmenopausal women: Interaction with physical activity
• Advancing Eucalyptus genomics: Identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries
• A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus
• Genomics of growth traits in forest trees
• cpDNA variability in Manilkara huberi, a species under sustainable management in the Brazilian Amazon
• Strict maternal inheritance of RAPD fingerprints confirms apomixis in cassava (Manihot esculenta Crantz) | Confirmation de l'existence de l'apomixie chez le manioc par la transmission maternelle stricte des empreintes RAPD
• A molecular and embryonic study of apomixis in cassava (Manihot esculenta Crantz)
• Microsatellite markers for heart of palm - Euterpe edulis and E. oleracea Mart. (Arecaceae)
• South Africa: Eucalyptus genome sequencing for bioenergy
• RAPD linkage mapping of the shell thickness locus in oil palm (Elaeis guineensis jacq.)
• Cost-effective method to synthesize a fluorescent internal DNA standard for automated fragment sizing
• Molecular and embryonic evidence of apomixis in cassava interspecific hybrids (Manihot spp.)
• Multiplexed systems of microsatellite markers for genetic analysis of mahogany, Swietenia macrophylla king (meliaceae), a threatened neotropical timber species
• Integrating genomics into Eucalyptus breeding.
• Potential of hybrids among elite clones of eucalypt by microsatellite markers | Potencial de híbridos entre clones-elite de eucalipto por meio de marcadores microssatélites
• Analysis of genetic relationships of Central American and Mexican pines using RAPD markers that distinguish species
• Lack of association between vitamin D receptor genotypes and haplotypes with fat-free mass in postmenopausal Brazilian women
• Population genetic structure of the endangered tropical tree species Caryocar brasiliense, based on variability at microsatellite loci
• Resistance to rust (Puccinia psidii Winter) in Eucalyptus: Mode of inheritance and mapping of a major gene with RAPD markers
• Population genetic structure of mahogany (Swietenia macrophylla King, Meliaceae) across the Brazilian Amazon, based on variation at microsatellite loci: Implications for conservation
• Towards a genus-wide reference linkage map for Eucalyptus based exclusively on highly informative microsatellite markers
• A microsatellite-based, gene-rich linkage map for the AA genome of Arachis (Fabaceae)
• High resolution microsatellite based analysis of the mating system allows the detection of significant biparental inbreeding in Caryocar brasiliense, an endangered tropical tree species
• Retrospective selection of elite parent trees using paternity testing with microsatellite markers: An alternative short term breeding tactic for Eucalyptus
• The complete genome sequence of Chromobacterium violaceum reveals remarkable and exploitable bacterial adaptability
• Y-chromosome STR haplotype diversity in Brazilian populations
• Haplotype diversity of 17 Y-chromosome STRs in Brazilians
• Genetic linkage maps of Citrus sunki Hort. ex. Tan. and Poncirus trifoliata (L.) Raf. and mapping of citrus tristeza virus resistance gene
• A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus
• Estimation of outcrossing rate in a breeding population of Eucalyptus urophylla with dominant RAPD and AFLP markers
• Genetic Structure, Mating System, and Long-Distance Gene Flow in Heart of Palm (Euterpe edulis Mart.)
• Power of microsatellite markers for fingerprinting and parentage analysis in Eucalyptus grandis breeding populations
• Genetic structure and mating system of Manilkara huberi (Ducke) A. Chev., a heavily logged Amazonian timber species
• Evidences for multiple maternal lineages of Caryocar brasiliense populations in the Brazilian Cerrado based on the analysis of chloroplast DNA sequences and microsatellite haplotype variation
• Brazilian population database for the 13 STR loci of the AmpFlSTR® Profiler Plus™ and Cofiler™ multiplex kits
• Microsatellite markers for Caesalpinia echinata Lam. (Brazilwood), a tree that named a country
• Flexible mating system in a logged population of Swietenia macrophylla King (Meliaceae): Implications for the management of a threatened neotropical tree species
• Development, characterization and mapping of microsatellite markers in Eucalyptus grandis and E. urophylla
• Microsatellite markers for Ceiba pentandra (Bombacaceae), an endangered tree species of the Amazon forest
• Genetic mapping of Eef1, a major effect QTL for early flowering in Eucalyptus grandis
• Historical genetics: Spatiotemporal analysis of the formation of the Brazilian population
• Genetic mapping of QTLs controlling vegetative propagation in Eucalyptus grandis and E. urophylla using a pseudo-testcross strategy and RAPD markers
• RAPD variation in a germplasm collection of Myracrodruon urundeuva (Anacardiaceae), an endangered tropical tree: Recommendations for conservation
• Genetic diversity of Brazilian oil palm (Elaeis oleifera H.B.K.) germplasm collected in the Amazon Forest
• Plant microsatellite genotyping with 4-color fluorescent detection using multiple-tailed primers.
• Genetic mapping of quantitative trait loci controlling growth and wood quality traits in Eucalyptus grandis using a maternal half-sib family and RAPD markers
• Microsatellite based genetic diversity and relationships among ten Creole and commercial cattle breeds raised in Brazil
• Development and characterization of microsatellite markers for genetic analysis of a Brazilian endangered tree species Caryocar brasiliense
• Conservation and synteny of SSR loci and QTLs for vegetative propagation in four Eucalyptus species
• APPLICATION OF BIOTECHNOLOGY TO FOREST TREES - DNA MARKERS TO STUDY NATURAL AND ARTIFICIAL SELECTION
• GENETIC-LINKAGE MAPS OF EUCALYPTUS-GRANDIS AND EUCALYPTUS-UROPHYLLA USING A PSEUDO-TESTCROSS - MAPPING STRATEGY AND RAPD MARKERS
• Molecular markers, forest genetics, and tree breeding
• Strict maternal inheritance of RAPD fingerprints confirms apomixis in cassava (Manihot esculenta Crantz)
• Microsatellite markers for heart of palm - Euterpe edulis and E-oleracea Mart. (Arecaceae)
• Potential of hybrids among elite clones of eucalypt by microsatellite markers
• Genetic gains via clonal selection in passion fruit. Passiflora edulis Sims
• Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: Mapping strategy and RAPD markers
• Nuclear DNA content of commercially important Eucalyptus species and hybrids
• MOLECULAR APPROACHES TO FOREST TREE IMPROVEMENT
• MOLECULAR GENETIC MAPPING OF ECONOMICALLY IMPORTANT TRAITS IN EUCALYPTUS-GRANDIS
• MAPPING IN WOODY-PLANTS WITH RAPD MARKERS - APPLICATION TO BREEDING IN FORESTRY AND HORTICULTURE
• USE OF PCR-BASED RAPD MARKERS FOR GENETIC-MAPPING IN CONIFERS
• VARIABILITY OF CASSAVA CLONES IN RELATION TO FERTILITY AND MORPHOLOGICAL ASPECTS
• GENETIC GAINS VIA CLONAL SELECTION IN PASSION FRUIT PASSIFLORA-EDULIS SIMS
• NUCLEAR-DNA CONTENT OF COMMERCIALLY IMPORTANT EUCALYPTUS SPECIES AND HYBRIDS
• Interaction with physical activity of vitamin D receptor genotypes and bone mineral density in postmenopausal women,Interacción con la actividad física de los genotipos del receptor de la vitamina D y de la densidad mineral ósea en mujeres postmenopáusicas
• CpDNA variability in Manilkara huberi, a species under sustainable management in the Brazilian Amazon,Variabilidade no cpDNA em Manilkara huberi, espécie sob manejo sustentável na Amazônia brasileira
• Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F1 hybrids
• Brazilian population database for the 13 STR loci of the AmpFlSTR® Profiler Plus™ and Cofiler™ multiplex kits
• Potential of hybrids among elite clones of eucalypt by microsatellite markers,Potencial de híbridos entre clones-elite de eucalipto por meio de marcadores microssatélites
• Status and perspectives of genomic selection in forest tree breeding
• Transmission for tracked loaders and dumpers of 165 kW (225 metric hp) built by Fiat Allis S.p.A.-Structural and functional characteristics.
• Genetic associations with resistance to Meloidogyne enterolobii in guava (Psidium sp.) using cross-genera SNPs and comparative genomics to Eucalyptus highlight evolutionary conservation across the Myrtaceae
• JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
• Genomic prediction of growth and wood quality traits in Eucalyptus benthamii using different genomic models and variable SNP genotyping density
• Quantitative genetics and genomics converge to accelerate forest tree breeding
• Realized genomic selection across generations in a reciprocal recurrent selection breeding program of Eucalyptus hybrids
• Microssatellite markers for plant variety protection of clonally propagated forest trees: a case study in teak (Tectona grandis L.f.)
• Genome-wide analysis highlights genetic admixture in exotic germplasm resources of Eucalyptus and unexpected ancestral genomic composition of interspecific hybrids
• Genome-wide SNP genotyping as a simple and practical tool to accelerate the development of inbred lines in outbred tree species: An example in cacao (Theobroma cacao L.)
• Conservation, domestication and breeding of Eucalyptus benthamii, a threatened, cold-tolerant subtropical species with a restricted genetic base and lot of potential
• A 3K Axiom® SNP array from a transcriptome-wide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze
• Genome-wide SNP genotyping as a simple and practical tool to accelerate the development of inbred lines in outbred tree species: an example in cacao (Theobroma cacao L.)
• High density linkage to physical mapping in a unique Tall x Dwarf Coconut (Cocos nuciferaL.) outbred F2uncovers a major QTL for flowering time colocalized with theFLOWERING LOCUS T (FT)
• A 3K Axiom®SNP array from a transcriptome-wide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer treeAraucaria angustifolia(Bert.) Kuntze
• Marker-based pedigree reconstruction reveals limited diversity within commercial Eucalyptus benthamii breeding populations in Brazil
• Improving genomic prediction of growth and wood traits in Eucalyptus using phenotypes from non-genotyped trees by single-step GBLUP
• Prospecting variability in full-sib families of Psidium guajava L. through phenotypic information and SNP markers