Daniel Lundin

Publications

• Unique ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit
• Accumulation of DNA in an anoxic sediment – rDNA and rRNA presence of members of the microbial community from Landsort Deep, the Baltic Sea
• Novel ATP-cone-driven allosteric regulation of ribonucleotide reductase via the radical-generating subunit
• Fusion of a functional glutaredoxin to the radical-generating subunit of ribonucleotide reductase
• Microbial metabolic routes in metagenome assembled genomes are mirrored by the mass balance of polycyclic aromatic hydrocarbons in a high altitude lake
• Rapid bacterioplankton transcription cascades regulate organic matter utilization during phytoplankton bloom progression in a coastal upwelling system
• Oxygen‐deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments
• A Rare Combination of Ribonucleotide Reductases in the Social Amoeba Dictyostelium discoideum
• H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa
• The Crystal Structure of Thermotoga maritima Class III Ribonucleotide Reductase Lacks a Radical Cysteine Pre-Positioned in the Active Site
• Prokaryotic Responses to Ammonium and Organic Carbon Reveal Alternative CO2 Fixation Pathways and Importance of Alkaline Phosphatase in the Mesopelagic North Atlantic
• Assembly of Dimanganese and Heterometallic Manganese Proteins
• Transplant experiments uncover Baltic Sea basin-specific responses in bacterioplankton community composition and metabolic activities
• Which sequencing depth is sufficient to describe patterns in bacterial α- and β-diversity?
• Microbial responses to anthropogenic dissolved organic carbon in the Arctic and Antarctic coastal seawaters
• Structural Mechanism of Allosteric Activity Regulation in a Ribonucleotide Reductase with Double ATP Cones
• Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea
• Reconstructing ecosystem functions of the active microbial community of the Baltic Sea oxygen depleted sediments
• Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition
• Metagenomic De Novo Assembly of an Aquatic Representative of the Verrucomicrobial Class Spartobacteria
• Disentangling seasonal bacterioplankton population dynamics by high-frequency sampling
• Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment
• The POU/Oct Transcription Factor Pdm1/nub Is Necessary for a Beneficial Gut Microbiota and Normal Lifespan of Drosophila
• A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes
• Use of Structural Phylogenetic Networks for Classification of the Ferritin-like Superfamily
• Biodegradation as an important sink of aromatic hydrocarbons in the oceans
• Diversity in Overall Activity Regulation of Ribonucleotide Reductase
• Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia
• A Metagenomics Transect into the Deepest Point of the Baltic Sea Reveals Clear Stratification of Microbial Functional Capacities
• Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens
• Gut microbiome and innate immune response patterns in IgE-associated eczema
• The Origin and Evolution of Ribonucleotide Reduction
• A unique cysteine-rich zinc finger domain present in a majority of class II ribonucleotide reductases mediates catalytic turnover
• Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations
• The evolution of early cellular systems viewed through the lens of biological interactions
• Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells
• Comparative Analysis of the Nodule Transcriptomes of Ceanothus thyrsiflorus (Rhamnaceae, Rosales) and Datisca glomerata (Datiscaceae, Cucurbitales)
• Microbial consumption of organophosphate esters in seawater under phosphorus limited conditions
• Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL 341
• Cobalamin and microbial plankton dynamics along a coastal to offshore transect in the Eastern North Atlantic Ocean
• Accumulation of DNA in an anoxic sediment – rDNA and rRNA presence of members of the microbial community from Landsort Deep, the Baltic Sea
• Dynamics of Baltic Sea phages driven by environmental changes
• HUG Domain Is Responsible for Active Dimer Stabilization in an NrdJd Ribonucleotide Reductase
• Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms
• The Fennoscandian Shield deep terrestrial virosphere suggests slow motion ‘boom and burst’ cycles
• Response of marine bacterioplankton pH homeostasis gene expression to elevated CO2
• Metapopulation theory identifies biogeographical patterns among core and satellite marine bacteria scaling from tens to thousands of kilometers
• Comparative proteomics reveals signature metabolisms of exponentially growing and stationary phase marine bacteria
• Identification and characterization of a novel botulinum neurotoxin
• Diversity and Host Interactions among Virulent and Temperate Baltic Sea Flavobacterium Phages
• A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins
• Basic Leucine Zipper Protein Cnc-C Is a Substrate and Transcriptional Regulator of the Drosophila 26S Proteasome
• High-resolution crystal structures of the flavoprotein NrdI in oxidized and reduced states – an unusual flavodoxin
• Ribonucleotide reduction - horizontal transfer of a required function spans all three domains
• Characterization of a REG/PA28 Proteasome Activator Homolog in Dictyostelium discoideum Indicates that the Ubiquitin- and ATP-Independent REGγ Proteasome Is an Ancient Nuclear Protease
• RNRdb, a curated database of the universal enzyme family ribonucleotide reductase, reveals a high level of misannotation in sequences deposited to Genbank
• Comparative Genomic Evidence for a Complete Nuclear Pore Complex in the Last Eukaryotic Common Ancestor
• Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts
• Gallionella and Sulfuricella populations are dominant during the transition of boreal potential to actual acid sulfate soils
• ASV portal: an interface to DNA-based biodiversity data in the Living Atlas
• Bacteroidetes to Firmicutes: captivity changes the gut microbiota composition and diversity in a social subterranean rodent
• Ecophysiological analysis reveals distinct environmental preferences in closely related Baltic Sea picocyanobacteria
• Activity modulation in anaerobic ribonucleotide reductases: nucleotide binding to the ATP-cone mediates long-range order-disorder transitions in the active site
• Environmental effects rather than relatedness determine gut microbiome similarity in a social mammal
• Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL341
• Structure of a ribonucleotide reductase R2 protein radical
• Tertiary-interaction characters enable fast, model-based structural phylogenetics beyond the twilight zone
• Activity modulation in anaerobic ribonucleotide reductases: nucleotide binding to the ATP-cone allosterically mediates substrate binding to the active site
• Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding
• Nucleotide binding to the ATP-cone in anaerobic ribonucleotide reductases allosterically regulates activity by modulating substrate binding
• Bacterial transcriptional repressor NrdR - a flexible multifactorial nucleotide sensor
• Bacterial transcriptional repressor NrdR – a flexible multifactorial nucleotide sensor
• The auxin phenylacetic acid induces NIN expression in the actinorhizal plant Datisca glomerata, whereas cytokinin acts antagonistically
• The path to dependence: stepwise genome evolution from a facultative symbiont to an endosymbiont in the N2-fixing diatom-Richelia symbioses
• Seasonal dynamics and nutrient controls of biogenic silica in Baltic Sea surface microplankton and picoplankton communities