Clarissa Boschiero

Publications

• Identification and Functional Investigation of Genome‐Encoded, Small, Secreted Peptides in Plants
• Unraveling genomic associations with feed efficiency and body weight traits in chickens through an integrative approach
• Insights from Initial Variant Detection by Sequencing Single Sperm in Cattle
• A genome-wide association study reveals novel genomic regions and positional candidate genes for fat deposition in broiler chickens.
• Characterization of Accessible Chromatin Regions in Cattle Rumen Epithelial Tissue during Weaning
• Butyrate Induces Modifications of the CTCF-Binding Landscape in Cattle Cells
• The peptide GOLVEN10 controls nodule and lateral root organogenesis and positioning along the longitudinal root axis
• Genome-wide Identification of Medicago Peptides involved in Macronutrient Responses and Nodulation.
• Genome-wide association study for performance traits in chickens using genotype by sequencing approach.
• High-throughput and Cost-effective Chicken Genotyping Using Next-Generation Sequencing.
• Quantitative trait loci with sex-specific effects for internal organs weights and hematocrit value in a broiler-layer cross.
• Detection and characterization of small insertion and deletion genetic variants in modern layer chicken genomes.
• Third Report on Chicken Genes and Chromosomes 2015.
• Functional classification of 15 million SNPs detected from diverse chicken populations.
• SNP and INDEL detection in a QTL region on chicken chromosome 2 associated with muscle deposition.
• Variant discovery in a QTL region on chromosome 3 associated with fatness in chickens.
• Identification and association of polymorphisms in CAPN1 and CAPN3 candidate genes related to performance and meat quality traits in chickens.
• Development of a high density 600K SNP genotyping array for chicken.
• The Pattern Recognition Receptor FLS2 Can Shape the Arabidopsis Rhizosphere Microbiome β-Diversity but Not EFR1 and CERK1
• The Dynamics of Chromatin Accessibility Prompted by Butyrate-Induced Chromatin Modification in Bovine Cells
• Associations Between Microsatellite Markers and Traits Related to Performance, Carcass and Organs in Chickens
• Quantitative trait loci for performance traits in a broiler x layer cross.
• 0318 PRUNE2 gene has a potential effect on residual feed intake in Nellore cattle
• Polymorphisms in FGFBP1 and FGFBP2 genes associated with carcass and meat quality traits in chickens.
• Association of IGF1 and KDM5A polymorphisms with performance, fatness and carcass traits in chickens.
• Quantitative trait loci associated with chemical composition of the chicken carcass.
• QTL for percentage of carcass and carcass parts in a broiler x layer cross.
• Precision of distances and ordering of microsatellite markers in consensus linkage maps of chromosomes 1, 3 and 4 from two reciprocal chicken populations using bootstrap sampling.
• Quantitative trait loci associated with fatness in a broiler-layer cross.
• Potential Association Between Microsatellite Markers on Chicken Chromosomes 6, 7 and 8 and Body Weight
• LegumeIP V3: from models to crops-an integrative gene discovery platform for translational genomics in legumes.
• The CLE53–SUNN genetic pathway negatively regulates arbuscular mycorrhiza root colonization in Medicago truncatula
• Identification of selection signatures involved in performance traits in a paternal broiler line.
• Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens
• Association of predicted deleterious single nucleotide polymorphisms with carcass traits in meat-type chickens
• Differentially CTCF-Binding Sites in Cattle Rumen Tissue during Weaning
• The peptide GOLVEN10 alters root development and noduletaxis in Medicago truncatula
• Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history
• Annotated genome sequence of a fast-growing diploid clone of red alder (Alnus rubra Bong.)
• PSVIII-B-5 Dynamic of Accessible Chromatin Regions in Cattle Rumen Epithelial Tissue During Weaning
• A Missense Mutation in the MYBPH Gene Is Associated With Abdominal Fat Traits in Meat-Type Chickens
• Unraveling the Genetic Basis of Feed Efficiency in Cattle through Integrated DNA Methylation and CattleGTEx Analysis
• Genome-wide characterization of genetic variants and putative regions under selection in meat and egg-type chicken lines
• Contrasting the microbiomes from forest rhizosphere and deeper bulk soil from an Amazon rainforest reserve.
• Integration of genome wide association studies and whole genome sequencing provides novel insights into fat deposition in chicken
• MtSSPdb: The Medicago truncatula Small Secreted Peptide Database
• Iron–Sulfur Cluster Protein NITROGEN FIXATION S-LIKE1 and Its Interactor FRATAXIN Function in Plant Immunity
• The Arabidopsis Iron-Sulfur (Fe-S) Cluster Gene MFDX1 Plays a Role in Host and Nonhost Disease Resistance by Accumulation of Defense-Related Metabolites
• Serendipita Fungi Modulate the Switchgrass Root Transcriptome to Circumvent Host Defenses and Establish a Symbiotic Relationship
• A Pilot Detection and Associate Study of Gene Presence-Absence Variation in Holstein Cattle
• Genetic linkage maps of chicken chromosomes 6, 7, 8, 11 and 13 from a Brazilian resource population
• Enriched GO pathways (FDR < 0.05) of expressed genes present in four clusters for each cattle abomasal tissue (fundic and pyloric) with significant changes in expression over time.
• Mapping summary statistics of 45 samples from cattle abomasal fundic and pyloric tissues.xlsx
• List of expressed genes present in four clusters for each cattle abomasal tissue (fundic and pyloric) with significant changes in expression over time.xlsx
• Enriched GO pathways (FDR < 0.05) for time-specific genes (τ ≥ 0.9) in cattle abomasal fundic and pyloric tissues.xlsx
• Profiling Genome-Wide Methylation Patterns in Cattle Infected with Ostertagia ostertagi
• Time-dependent RNA transcriptional profiling of abomasal mucosa in cattle infected with Ostertagia ostertagi
• Transcriptional Profiling of Abomasal Mucosa from Young Calves Experimentally Infected with Ostertagia ostertagi
• Exploring Tissue- and Sex-Specific DNA Methylation in Cattle Using a Pan-Mammalian Infinium Array