CW
Publications
- Li, X., Hu, Z., Yu, X., Ma, B., Zhang, C., Wei, C.*, and Wu, J.*, “RNA-seq of embryonic cells and germ cells shows direct evidence for dosage compensation in mammals”, Scientific Reports, 2017 (accepted), 10.1038/s41498-017-03829-z (SREP-16-42-20).
- Hu, Z., Sun, C., Lu, K., Chu, X., Zhao, Y., Lu, J., Shi, J., Wei, C.*, “EUPAN enables pan-genome studies of a large number of eukaryotic genomes”, Bioinformatics, 2017, btx170.
- Huang, W., Tsai L., Li, Y., Hua, N., Sun, C., Wei, C.*, “Widespread of horizontal gene transfer in the human genome”, BMC Genomics, 2017, 18:274
- Zhu, H., Xu, W., Hu, Z., Zhang, H., Shen, Y., Lu, S., Wei, C.*, Wang, Z.*, “RNA virus receptor Rig-I monitors gut microbiota and inhibits colitis-associated colorectal cancer”, J. of Experimental & Clinical Cancer Research, 2017, 36:2.
- Sun, C., Hu, Z., Lu, K., Zhao, Y., Lu, J., Zheng, T., Wang, W., Shi, J., Zhang, D., Li, Z.*, Wei, C.*, “RPAN: Rice Pan-genome Browser for ~3,000 rice genomes”, Nucleic Acids Research, 2017, 45(2): 597-605
- Hu, Z., Scott, H., Qin, G., Zheng, G, Chu, X., Xie, L., Adelson, D., Oftedal, B., Venugopal, P., Babic, M., Hahn, C., Zhang, B., Wang, X., Li, N., Wei, C.*, "Revealing missing human protein isoforms based on ab initio prediction, RNA-seq and proteomics", Scientific Reports, 2015, 5:10940
- Zhang, Y., He, Y., Zheng, G., Wei, C.*, "MOST+: A de novo motif finder combining genomic sequence and heterogeneous genome-wide signatures", BMC Genomics, 2015, 16(Suppl 7):S13
- Hou, T., Zheng, G., Zhang P., Jia, J., Li, J., Xie, L., Wei, C.*, Li, Y., " LAceP: lysine acetylation sites prediction using logistic regression classifier", PLoS ONE, 2014, 9(2): e89575
- Jia, B., Cai, K., Xuan, L., Wei, C.*, “NeSSM: a Next-generation Sequencing Simulator for Metagenomics”, PLoS ONE, 2013, 8(10):e75448.
- Zheng, G., Liu, Q., Ding, G., Wei, C.*, Li, Y., “Towards biological characters of interactions between transcription factors and their DNA targets in Mammals”, 2012, BMC Genomics, 13:388
- He, Y., Zhang, Y., Zheng, G., Wei, C.*, “CTF: a CRF-based transcription factor binding sites finding system”, BMC Genomics, 2012, 13(Suppl 8):S18
- Zheng, G., Wang, H., Wei, C.*, Li, Y., “iGepros: An integrated gene and protein annotation server for biological nature exploration”, BMC Bioinformatics, 2011, 12(Suppl 14):S6
- Jia, P., Xuan, L., Liu, L., Wei, C.*, “MetaBinG: Using GPUs to accelerate metagenomic sequence classification”. PLoS ONE, 2011, 6(11): e25353.
- The MGC Project Team, “The Completion of the Mammalian Gene Collection (MGC)”, Genome Research, 2009, 19:2324-2333
- Yang, X., Xie, L., Li, Y., Wei, C*. “More than 9,000,000 Unique Genes in Human Gut Bacterial Community: Estimating Gene Numbers Inside a Human Body”, PLoS ONE, 2009, 4(6): e6074
- Zheng, G., Tu, K., Yang, Q., Xiong, Y., Wei, C., Xie, L., Zhu, Y. and Li, Y. “ITFP: an integrated platform of mammalian transcription factors”, Bioinformatics, 2008, 24(20):2416-2417
- Zheng, G., Qian, Z., Yang, Q., Wei, C., Xie, L., Zhu, Y. and Li, Y. “The Combination Approach of SVM and ECOC for Powerful Identification and Classification of Transcription Factor”, BMC Bioinformatics, 2008 Jun 16;9(1):282.
- Arumugam, M., Wei, C., Brown, R. H. and Brent, M. R. “PAIRAGON + N-SCAN_EST: A Model-Based Gene Annotation Pipeline”, Genome Biology, 2006, 7(Suppl I):S5.
- Wei, C. and Brent, M. R. “Using ESTs to Improve the Accuracy of de novo Gene Prediction”, BMC Bioinformatics, 2006, 7:327.
- Wei, C., Lamesch, P., Arumugam M., Rosenberg, J., Hu, P., Vidal, M., and Brent, M. R. “Closing in on the C.elegans ORFeome by Cloning TWINSCAN predictions”, Genome Research, 2005, 15:577-582.
- Stein, L. D. Z. Bao, ..., Wei, C., ..., Waterston, R. H. “The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics”, PLoS Biology, 2003, 1(2): E45