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Bryan Daniels

Publications

  • Criticality Distinguishes the Ensemble of Biological Regulatory Networks
  • Dual Coding Theory Explains Biphasic Collective Computation in Neural Decision-Making
  • Mesoscopic statistical properties of multistep enzyme-mediated reactions
  • Network Analysis for the Digital Humanities: Principles, Problems, Extensions
  • Tyramine and its receptor TYR1 linked behavior QTL to reproductive physiology in honey bee workers (Apis mellifera)
  • Perspective: Sloppiness and emergent theories in physics, biology, and beyond
  • Automated adaptive inference of phenomenological dynamical models
  • Nucleation at the DNA supercoiling transition
  • Discontinuities at the DNA supercoiling transition
  • Abrupt Buckling Transition Observed during the Plectoneme Formation of Individual DNA Molecules
  • Sloppiness, robustness, and evolvability in systems biology
  • Efficient Inference of Parsimonious Phenomenological Models of Cellular Dynamics Using S-Systems and Alternating Regression
  • Quantifying collectivity
  • Absence of Kondo lattice coherence effects in Ce[sub 0.6]La[sub 0.4]Pb[sub 3]: A magnetic-field study
  • Synchronization of coupled rotators: Josephson junction ladders and the locally coupled Kuramoto model
  • Sparse code of conflict in a primate society
  • Locating Decision-Making Circuits in a Heterogeneous Neural Network
  • Control of finite critical behaviour in a small-scale social system
  • Collective memory in primate conflict implied by temporal scaling collapse
  • Automated, predictive, and interpretable inference of C. elegans escape dynamics
  • Convenient Interface to Inverse Ising (ConIII): A Python 3 Package for Solving Ising-Type Maximum Entropy Models
  • Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics
  • Individual and collective encoding of risk in animal groups
  • Scaling theory of armed-conflict avalanches
  • Quantifying the impact of network structure on speed and accuracy in collective decision-making
  • The basis of easy controllability in Boolean networks
  • Discovering sparse control strategies in neural activity
  • Subcritical escape waves in schooling fish
  • Phase Transitions and Criticality in the Collective Behavior of Animals — Self-Organization and Biological Function
  • Identifying a developmental transition in honey bees using gene expression data
  • The coexistence of localized and distributed behavioral information in neural activity
  • Inferring the Logic of Collective Information Processors
  • Parameter Estimation, Sloppiness, and Model Identifiability

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Ilya Nemenman

Ilya Nemenman

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